Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
CSPP1	0	genome.wustl.edu	37	8	67988761	67988761	+	Silent	SNP	C	C	T			TCGA-GM-A2DC-01A-11D-A18P-09	TCGA-GM-A2DC-10C-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c38c65b0-3e79-4351-badc-922a01dbb9ce	ca5e8f90-befe-401c-8897-34209b1b6e2e	8	67988761	67988761	C	T	SNP	CSPP1	ENST00000262210	human	ensembl	69_37n	+1	known	silent	c.252	p.I84	1.000	NULL	NULL	-	no_errors	CSPP1	HGNC	ENSG00000104218	44	0	0.00	91	20	18.02	-	-	-
DDX52	0	genome.wustl.edu	37	17	35981486	35981486	+	Missense_Mutation	SNP	C	C	A			TCGA-GM-A2DC-01A-11D-A18P-09	TCGA-GM-A2DC-10C-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c38c65b0-3e79-4351-badc-922a01dbb9ce	ca5e8f90-befe-401c-8897-34209b1b6e2e	17	35981486	35981486	C	A	SNP	DDX52	ENST00000349699	human	ensembl	69_37n	-1	known	missense	c.1307	p.G436V	1.000	pfam_Helicase_C,smart_Helicase_C,pfscan_Helicase_C	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX52	HGNC	ENSG00000141141	87	0	0.00	81	22	21.36	-	-	-
DGAT1	0	genome.wustl.edu	37	8	145542158	145542158	+	Silent	SNP	C	C	T			TCGA-GM-A2DC-01A-11D-A18P-09	TCGA-GM-A2DC-10C-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c38c65b0-3e79-4351-badc-922a01dbb9ce	ca5e8f90-befe-401c-8897-34209b1b6e2e	8	145542158	145542158	C	T	SNP	DGAT1	ENST00000332324	human	ensembl	69_37n	-1	known	silent	c.540	p.A180	0.001	pfam_MBOAT_fam,superfamily_PEP-util_enz_mobile_dom	pfam_MBOAT_fam,superfamily_PEP-util_enz_mobile_dom	-	no_errors	DGAT1	HGNC	ENSG00000185000	18	0	0.00	25	17	40.48	-	-	-
EIF2AK1	0	genome.wustl.edu	37	7	6084237	6084237	+	Missense_Mutation	SNP	T	T	A			TCGA-GM-A2DC-01A-11D-A18P-09	TCGA-GM-A2DC-10C-01D-A18P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c38c65b0-3e79-4351-badc-922a01dbb9ce	ca5e8f90-befe-401c-8897-34209b1b6e2e	7	6084237	6084237	T	A	SNP	EIF2AK1	ENST00000199389	human	ensembl	69_37n	-1	known	missense	c.686	p.Y229F	1.000	pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	EIF2AK1	HGNC	ENSG00000086232	26	0	0.00	21	36	63.16	-	-	-
ELMO1	0	genome.wustl.edu	37	7	36934508	36934508	+	Missense_Mutation	SNP	G	G	A			TCGA-GM-A2DC-01A-11D-A18P-09	TCGA-GM-A2DC-10C-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c38c65b0-3e79-4351-badc-922a01dbb9ce	ca5e8f90-befe-401c-8897-34209b1b6e2e	7	36934508	36934508	G	A	SNP	ELMO1	ENST00000310758	human	ensembl	69_37n	-1	known	missense	c.1552	p.R518C	1.000	NULL	pfam_DUF3361,pfam_Engulfment_cell_motility_ELMO,superfamily_ARM-type_fold	-	no_errors	ELMO1	HGNC	ENSG00000155849	135	0	0.00	93	86	48.04	-	-	-
GNL3L	0	genome.wustl.edu	37	X	54585017	54585017	+	Missense_Mutation	SNP	C	C	T			TCGA-GM-A2DC-01A-11D-A18P-09	TCGA-GM-A2DC-10C-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c38c65b0-3e79-4351-badc-922a01dbb9ce	ca5e8f90-befe-401c-8897-34209b1b6e2e	X	54585017	54585017	C	T	SNP	GNL3L	ENST00000336470	human	ensembl	69_37n	+1	known	missense	c.1595	p.T532M	0.931	NULL	pfam_GTP_binding_domain,pfam_Fe2_transport_prot_B_N,prints_GTP_binding_domain	-	no_errors	GNL3L	HGNC	ENSG00000130119	42	0	0.00	38	21	35.59	-	-	-
GOLGA8J	0	genome.wustl.edu	37	15	32686875	32686875	+	Missense_Mutation	SNP	G	G	A			TCGA-GM-A2DC-01A-11D-A18P-09	TCGA-GM-A2DC-10C-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c38c65b0-3e79-4351-badc-922a01dbb9ce	ca5e8f90-befe-401c-8897-34209b1b6e2e	15	32686875	32686875	G	A	SNP	GOLGA8J	ENST00000512626	human	ensembl	69_37n	-1	novel	missense	c.1198	p.P400S	0.917	NULL	NULL	-	no_errors	RP13-395E19.1	Clone_based_vega_gene	ENSG00000249931	14	0	0.00	12	12	50.00	-	-	-
HLA-DRB1	0	genome.wustl.edu	37	6	32549452	32549452	+	Missense_Mutation	SNP	C	C	G			TCGA-GM-A2DC-01A-11D-A18P-09	TCGA-GM-A2DC-10C-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c38c65b0-3e79-4351-badc-922a01dbb9ce	ca5e8f90-befe-401c-8897-34209b1b6e2e	6	32549452	32549452	C	G	SNP	HLA-DRB1	ENST00000360004	human	ensembl	69_37n	-1	known	missense	c.534	p.Q178H	0.016	pfam_Ig_C1-set,smart_Ig_C1-set,pfscan_Ig-like	pfam_MHC_II_b_N,pfam_Ig_C1-set,superfamily_MHC_I/II-like_Ag-recog,smart_MHC_II_b_N,smart_Ig_C1-set,pfscan_Ig-like	-	no_errors	HLA-DRB1	HGNC	ENSG00000196126	8	0	0.00	11	6	35.29	-	-	-
ICAM3	0	genome.wustl.edu	37	19	10444840	10444840	+	Frame_Shift_Del	DEL	A	A	-			TCGA-GM-A2DC-01A-11D-A18P-09	TCGA-GM-A2DC-10C-01D-A18P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c38c65b0-3e79-4351-badc-922a01dbb9ce	ca5e8f90-befe-401c-8897-34209b1b6e2e	19	10444840	10444840	A	-	DEL	ICAM3	ENST00000160262	human	ensembl	69_37n	-1	known	frame_shift_del	c.1437	p.I479fs	0.031	NULL	pfam_ICAM_N,smart_Ig_sub,pfscan_Ig-like,prints_ICAM_VCAM_N,prints_ICAM	-	no_errors	ICAM3	HGNC	ENSG00000076662	42	0	0.00	19	15	40.54	-	-	-
KBTBD10	0	genome.wustl.edu	37	2	170366849	170366849	+	Silent	SNP	C	C	T			TCGA-GM-A2DC-01A-11D-A18P-09	TCGA-GM-A2DC-10C-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c38c65b0-3e79-4351-badc-922a01dbb9ce	ca5e8f90-befe-401c-8897-34209b1b6e2e	2	170366849	170366849	C	T	SNP	KBTBD10	ENST00000284669	human	ensembl	69_37n	+1	known	silent	c.561	p.S187	1.000	pfam_BACK,smart_BACK,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KBTBD10	HGNC	ENSG00000239474	35	0	0.00	55	27	32.53	-	-	-
KRTAP4-11	0	genome.wustl.edu	37	17	39274455	39274455	+	Missense_Mutation	SNP	G	G	T			TCGA-GM-A2DC-01A-11D-A18P-09	TCGA-GM-A2DC-10C-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c38c65b0-3e79-4351-badc-922a01dbb9ce	ca5e8f90-befe-401c-8897-34209b1b6e2e	17	39274455	39274455	G	T	SNP	KRTAP4-11	ENST00000391413	human	ensembl	69_37n	-1	known	missense	c.113	p.T38N	0.002	pfam_Keratin-assoc	pfam_Keratin-assoc	-	no_errors	KRTAP4-11	HGNC	ENSG00000212721	33	0	0.00	92	23	20.00	-	-	-
PCDHB12	0	genome.wustl.edu	37	5	140590325	140590325	+	Missense_Mutation	SNP	G	G	A			TCGA-GM-A2DC-01A-11D-A18P-09	TCGA-GM-A2DC-10C-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c38c65b0-3e79-4351-badc-922a01dbb9ce	ca5e8f90-befe-401c-8897-34209b1b6e2e	5	140590325	140590325	G	A	SNP	PCDHB12	ENST00000239450	human	ensembl	69_37n	+1	known	missense	c.1846	p.G616S	0.092	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB12	HGNC	ENSG00000120328	13	0	0.00	17	8	32.00	-	-	-
PMVK	0	genome.wustl.edu	37	1	154897637	154897637	+	Missense_Mutation	SNP	T	T	A			TCGA-GM-A2DC-01A-11D-A18P-09	TCGA-GM-A2DC-10C-01D-A18P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c38c65b0-3e79-4351-badc-922a01dbb9ce	ca5e8f90-befe-401c-8897-34209b1b6e2e	1	154897637	154897637	T	A	SNP	PMVK	ENST00000368467	human	ensembl	69_37n	-1	known	missense	c.547	p.N183Y	0.018	pirsf_Pmev_kin_anim,tigrfam_Pmev_kin_anim	pfam_Pmev_kin_anim,pirsf_Pmev_kin_anim,tigrfam_Pmev_kin_anim	-	no_errors	PMVK	HGNC	ENSG00000163344	48	0	0.00	72	30	29.41	-	-	-
PPP5C	0	genome.wustl.edu	37	19	46891947	46891947	+	Missense_Mutation	SNP	C	C	T			TCGA-GM-A2DC-01A-11D-A18P-09	TCGA-GM-A2DC-10C-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c38c65b0-3e79-4351-badc-922a01dbb9ce	ca5e8f90-befe-401c-8897-34209b1b6e2e	19	46891947	46891947	C	T	SNP	PPP5C	ENST00000478046	human	ensembl	69_37n	+1	known	missense	c.1310	p.T437M	0.969	smart_Ser/Thr-sp_prot-phosphatase,pirsf_Ser/Thr_PPase_5,prints_Ser/Thr-sp_prot-phosphatase	pfam_Metallo_PEstase_dom,pfam_PPP_dom,pfam_TPR-1,pfam_TPR_2,smart_TPR_repeat,smart_Ser/Thr-sp_prot-phosphatase,pirsf_Ser/Thr_PPase_5,prints_Ser/Thr-sp_prot-phosphatase,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	PPP5C	HGNC	ENSG00000011485	57	0	0.00	43	16	27.12	-	-	-
PXDN	0	genome.wustl.edu	37	2	1687851	1687851	+	Splice_Site	SNP	C	C	A			TCGA-GM-A2DC-01A-11D-A18P-09	TCGA-GM-A2DC-10C-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c38c65b0-3e79-4351-badc-922a01dbb9ce	ca5e8f90-befe-401c-8897-34209b1b6e2e	2	1687851	1687851	C	A	SNP	PXDN	ENST00000252804	human	ensembl	69_37n	-1	known	splice_site	c.488+1	e5+1	1.000	-	-	-	no_errors	PXDN	HGNC	ENSG00000130508	52	0	0.00	30	15	33.33	-	-	-
SLC19A2	0	genome.wustl.edu	37	1	169446894	169446894	+	Silent	SNP	T	T	G			TCGA-GM-A2DC-01A-11D-A18P-09	TCGA-GM-A2DC-10C-01D-A18P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c38c65b0-3e79-4351-badc-922a01dbb9ce	ca5e8f90-befe-401c-8897-34209b1b6e2e	1	169446894	169446894	T	G	SNP	SLC19A2	ENST00000236137	human	ensembl	69_37n	-1	known	silent	c.306	p.L102	0.981	pfam_Folate_carrier,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pirsf_Folate_carrier	pfam_Folate_carrier,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pirsf_Folate_carrier	-	no_errors	SLC19A2	HGNC	ENSG00000117479	16	0	0.00	32	8	20.00	-	-	-
SRPX2	0	genome.wustl.edu	37	X	99920275	99920275	+	Missense_Mutation	SNP	C	C	T			TCGA-GM-A2DC-01A-11D-A18P-09	TCGA-GM-A2DC-10C-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c38c65b0-3e79-4351-badc-922a01dbb9ce	ca5e8f90-befe-401c-8897-34209b1b6e2e	X	99920275	99920275	C	T	SNP	SRPX2	ENST00000373004	human	ensembl	69_37n	+1	known	missense	c.568	p.R190C	1.000	pfam_Hyalin,pfscan_Hyalin	pfam_Hyalin,pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,superfamily_Thioredoxin-like_fold,smart_Sushi_SCR_CCP,pfscan_Hyalin,pfscan_Sushi_SCR_CCP	-	no_errors	SRPX2	HGNC	ENSG00000102359	72	0	0.00	45	25	35.71	-	-	-
TNC	0	genome.wustl.edu	37	9	117808755	117808755	+	Missense_Mutation	SNP	C	C	T			TCGA-GM-A2DC-01A-11D-A18P-09	TCGA-GM-A2DC-10C-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c38c65b0-3e79-4351-badc-922a01dbb9ce	ca5e8f90-befe-401c-8897-34209b1b6e2e	9	117808755	117808755	C	T	SNP	TNC	ENST00000350763	human	ensembl	69_37n	-1	known	missense	c.5059	p.E1687K	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C,superfamily_Fibronectin_type3,smart_EGF-like,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C,pfscan_EG-like_dom,pfscan_Fibronectin_type3	-	no_errors	TNC	HGNC	ENSG00000041982	87	0	0.00	51	23	31.08	-	-	-
ZFP36L1	0	genome.wustl.edu	37	14	69257168	69257169	+	Frame_Shift_Ins	INS	-	-	C			TCGA-GM-A2DC-01A-11D-A18P-09	TCGA-GM-A2DC-10C-01D-A18P-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c38c65b0-3e79-4351-badc-922a01dbb9ce	ca5e8f90-befe-401c-8897-34209b1b6e2e	14	69257168	69257169	-	C	INS	ZFP36L1	ENST00000336440	human	ensembl	69_37n	-1	known	frame_shift_ins	c.99_98	p.C34fs	0.993:0.997	pfam_Tis11B_N	pfam_Tis11B_N,pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	ZFP36L1	HGNC	ENSG00000185650	25	0	0.00	15	8	34.78	-	-	-
ZNF625	0	genome.wustl.edu	37	19	12251081	12251081	+	Missense_Mutation	SNP	A	A	C			TCGA-GM-A2DC-01A-11D-A18P-09	TCGA-GM-A2DC-10C-01D-A18P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c38c65b0-3e79-4351-badc-922a01dbb9ce	ca5e8f90-befe-401c-8897-34209b1b6e2e	19	12251081	12251081	A	C	SNP	ZNF625	ENST00000430024	human	ensembl	69_37n	-1	known	missense	c.326	p.L109R	0.000	NULL	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	-	no_errors	ZNF625	HGNC	ENSG00000213297	20	0	0.00	9	15	62.50	-	-	-
