Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
ABCC3	0	genome.wustl.edu	37	17	48750363	48750363	+	Missense_Mutation	SNP	G	G	A			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	17	48750363	48750363	G	A	SNP	ABCC3	ENST00000285238	human	ensembl	69_37n	+1	known	missense	c.2273	p.R758Q	1.000	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like,tigrfam_Multidrug-R_assoc	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1,tigrfam_Multidrug-R_assoc	-	no_errors	ABCC3	HGNC	ENSG00000108846	95	0	0.00	42	35	45.45	-	-	-
ABHD15	0	genome.wustl.edu	37	17	27893598	27893598	+	Missense_Mutation	SNP	C	C	A			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	17	27893598	27893598	C	A	SNP	ABHD15	ENST00000307201	human	ensembl	69_37n	-1	known	missense	c.387	p.L129F	0.999	pirsf_AB-Hydro_YheT	pirsf_AB-Hydro_YheT	-	no_errors	ABHD15	HGNC	ENSG00000168792	37	0	0.00	6	8	57.14	-	-	-
ACVR2A	0	genome.wustl.edu	37	2	148657136	148657136	+	Missense_Mutation	SNP	C	C	T			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	2	148657136	148657136	C	T	SNP	ACVR2A	ENST00000241416	human	ensembl	69_37n	+1	known	missense	c.373	p.P125S	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Activin_rcpt,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Activin_II/TGFBeta-II_recpt	-	no_errors	ACVR2A	HGNC	ENSG00000121989	120	0	0.00	39	15	27.78	-	-	-
ADAM2	0	genome.wustl.edu	37	8	39627085	39627085	+	Silent	SNP	A	A	G			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	8	39627085	39627085	A	G	SNP	ADAM2	ENST00000265708	human	ensembl	69_37n	-1	known	silent	c.1038	p.S346	1.000	pfam_Peptidase_M12B,pfscan_Peptidase_M12B	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin	-	no_errors	ADAM2	HGNC	ENSG00000104755	51	0	0.00	20	8	28.57	-	-	-
ADAM3A	0	genome.wustl.edu	37	8	39358477	39358477	+	RNA	SNP	A	A	G			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	8	39358477	39358477	A	G	SNP	ADAM3A	ENST00000460383	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.011	-	-	-	no_errors	ADAM3A	HGNC	ENSG00000197475	40	0	0.00	18	4	18.18	-	-	-
ADCY3	0	genome.wustl.edu	37	2	25141736	25141736	+	Silent	SNP	G	G	T			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	2	25141736	25141736	G	T	SNP	ADCY3	ENST00000260600	human	ensembl	69_37n	-1	known	silent	c.121	p.R41	1.000	NULL	pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY3	HGNC	ENSG00000138031	38	0	0.00	29	4	11.76	-	-	-
ADM2	0	genome.wustl.edu	37	22	50921694	50921694	+	Silent	SNP	C	C	T			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	22	50921694	50921694	C	T	SNP	ADM2	ENST00000362068	human	ensembl	69_37n	+1	known	silent	c.559	p.L187	0.000	NULL	NULL	-	no_errors	ADM2	HGNC	ENSG00000128165	47	0	0.00	19	4	17.39	-	-	-
ANKRD33B	0	genome.wustl.edu	37	5	10624866	10624866	+	Missense_Mutation	SNP	T	T	G			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	5	10624866	10624866	T	G	SNP	ANKRD33B	ENST00000504806	human	ensembl	69_37n	+1	known	missense	c.526	p.S176A	0.000	NULL	superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD33B	HGNC	ENSG00000164236	65	0	0.00	40	5	11.11	-	-	-
ANKRD33B	0	genome.wustl.edu	37	5	10624887	10624887	+	Missense_Mutation	SNP	T	T	C			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	5	10624887	10624887	T	C	SNP	ANKRD33B	ENST00000504806	human	ensembl	69_37n	+1	known	missense	c.547	p.S183P	0.000	NULL	superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD33B	HGNC	ENSG00000164236	68	0	0.00	37	11	22.92	-	-	-
ARHGAP25	0	genome.wustl.edu	37	2	69002760	69002760	+	Missense_Mutation	SNP	C	C	T			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	2	69002760	69002760	C	T	SNP	ARHGAP25	ENST00000473986	human	ensembl	69_37n	+1	known	missense	c.200	p.T67M	0.000	NULL	NULL	-	no_errors	ARHGAP25	HGNC	ENSG00000163219	62	0	0.00	39	5	11.11	-	-	-
ARHGEF38	0	genome.wustl.edu	37	4	106580340	106580340	+	Missense_Mutation	SNP	A	A	G			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	4	106580340	106580340	A	G	SNP	ARHGEF38	ENST00000420470	human	ensembl	69_37n	+1	putative	missense	c.1363	p.T455A	0.001	pfam_BAR_dom,smart_BAR_dom,pfscan_BAR_dom	pfam_DH-domain,pfam_BAR_dom,pfam_SH3_2,pfam_SH3_domain,superfamily_DH-domain,superfamily_SH3_domain,smart_DH-domain,smart_BAR_dom,smart_SH3_domain,pfscan_BAR_dom,pfscan_SH3_domain,pfscan_DH-domain	-	no_errors	ARHGEF38	HGNC	ENSG00000236699	73	0	0.00	59	9	13.24	-	-	-
AUTS2	0	genome.wustl.edu	37	7	69364484	69364484	+	Silent	SNP	G	G	A			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	7	69364484	69364484	G	A	SNP	AUTS2	ENST00000342771	human	ensembl	69_37n	+1	known	silent	c.522	p.Q174	1.000	NULL	prints_AUTS2	-	no_errors	AUTS2	HGNC	ENSG00000158321	35	0	0.00	21	7	25.00	-	-	-
C10orf112	0	genome.wustl.edu	37	10	19678286	19678286	+	Missense_Mutation	SNP	C	C	T			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	10	19678286	19678286	C	T	SNP	C10orf112	ENST00000454679	human	ensembl	69_37n	+1	known	missense	c.2750	p.T917M	0.002	pfam_MAM_dom,superfamily_ConA-like_lec_gl	pfam_MAM_dom,pfam_LDrepeatLR_classA_rpt,superfamily_ConA-like_lec_gl,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_MAM_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_MAM_dom,prints_MAM_dom	-	no_errors	C10orf112	HGNC	ENSG00000204740	53	0	0.00	32	8	20.00	-	-	-
C19orf38	0	genome.wustl.edu	37	19	10973866	10973866	+	Silent	SNP	C	C	T			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	19	10973866	10973866	C	T	SNP	C19orf38	ENST00000397820	human	ensembl	69_37n	+1	known	silent	c.526	p.L176	0.874	NULL	NULL	-	no_errors	C19orf38	HGNC	ENSG00000214212	65	0	0.00	25	10	28.57	-	-	-
C1orf101	0	genome.wustl.edu	37	1	244773862	244773862	+	RNA	SNP	T	T	C			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	1	244773862	244773862	T	C	SNP	C1orf101	ENST00000473875	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.004	-	-	-	no_errors	C1orf101	HGNC	ENSG00000179397	93	0	0.00	68	8	10.53	-	-	-
C1orf109	0	genome.wustl.edu	37	1	38148123	38148123	+	RNA	SNP	T	T	G			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	1	38148123	38148123	T	G	SNP	C1orf109	ENST00000494120	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	C1orf109	HGNC	ENSG00000116922	46	0	0.00	27	4	12.90	-	-	-
C1orf109	0	genome.wustl.edu	37	1	38148124	38148124	+	RNA	SNP	G	G	A			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	1	38148124	38148124	G	A	SNP	C1orf109	ENST00000494120	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	C1orf109	HGNC	ENSG00000116922	45	0	0.00	27	4	12.90	-	-	-
C1orf174	0	genome.wustl.edu	37	1	3807204	3807204	+	Missense_Mutation	SNP	C	C	T			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	1	3807204	3807204	C	T	SNP	C1orf174	ENST00000361605	human	ensembl	69_37n	-1	known	missense	c.547	p.V183I	0.000	NULL	NULL	-	no_errors	C1orf174	HGNC	ENSG00000198912	58	0	0.00	36	13	26.53	-	-	-
C21orf88	0	genome.wustl.edu	37	21	40969621	40969621	+	RNA	SNP	C	C	T			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	21	40969621	40969621	C	T	SNP	C21orf88	ENST00000489821	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.021	-	-	-	no_errors	C21orf88	HGNC	ENSG00000184809	46	0	0.00	34	5	12.82	-	-	-
C6orf100	0	genome.wustl.edu	37	6	28911802	28911802	+	Missense_Mutation	SNP	G	G	A			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	6	28911802	28911802	G	A	SNP	C6orf100	ENST00000377186	human	ensembl	69_37n	+1	known	missense	c.122	p.G41E	0.000	NULL	NULL	-	no_errors	C6orf100	HGNC	ENSG00000204709	42	0	0.00	28	4	12.50	-	-	-
C9orf72	0	genome.wustl.edu	37	9	27547313	27547313	+	RNA	SNP	G	G	T			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	9	27547313	27547313	G	T	SNP	C9orf72	ENST00000488117	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	C9orf72	HGNC	ENSG00000147894	54	0	0.00	29	8	21.62	-	-	-
CCDC162P	0	genome.wustl.edu	37	6	109615603	109615603	+	RNA	SNP	G	G	T			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	6	109615603	109615603	G	T	SNP	CCDC162P	ENST00000422819	human	ensembl	69_37n	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	CCDC162P	HGNC	ENSG00000203799	134	1	0.74	69	11	13.75	-	-	-
CEP152	0	genome.wustl.edu	37	15	49036477	49036477	+	Silent	SNP	T	T	C			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	15	49036477	49036477	T	C	SNP	CEP152	ENST00000380950	human	ensembl	69_37n	-1	known	silent	c.3795	p.E1265	1.000	NULL	NULL	-	no_errors	CEP152	HGNC	ENSG00000103995	94	0	0.00	34	20	37.04	-	-	-
CES1P1	0	genome.wustl.edu	37	16	55806409	55806409	+	RNA	SNP	T	T	C			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	16	55806409	55806409	T	C	SNP	CES1P1	ENST00000571348	human	ensembl	69_37n	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	CES1P1	HGNC	ENSG00000228695	112	0	0.00	66	10	13.16	-	-	-
CHN2	0	genome.wustl.edu	37	7	29186256	29186256	+	Missense_Mutation	SNP	A	A	G			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	7	29186256	29186256	A	G	SNP	CHN2	ENST00000474070	human	ensembl	69_37n	+1	known	missense	c.44	p.Q15R	0.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	CHN2	HGNC	ENSG00000106069	113	1	0.88	53	10	15.62	-	-	-
CKAP2L	0	genome.wustl.edu	37	2	113513758	113513758	+	Missense_Mutation	SNP	C	C	G			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	2	113513758	113513758	C	G	SNP	CKAP2L	ENST00000302450	human	ensembl	69_37n	-1	known	missense	c.1190	p.R397T	0.001	NULL	NULL	-	no_errors	CKAP2L	HGNC	ENSG00000169607	137	0	0.00	69	28	28.87	-	-	-
CROCCP3	0	genome.wustl.edu	37	1	16816216	16816216	+	RNA	SNP	C	C	T			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	1	16816216	16816216	C	T	SNP	CROCCP3	ENST00000591348	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.979	-	-	-	no_errors	CROCCP3	HGNC	ENSG00000080947	37	0	0.00	20	7	25.93	-	-	-
CYB5R1	0	genome.wustl.edu	37	1	202936400	202936400	+	RNA	SNP	C	C	T			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	1	202936400	202936400	C	T	SNP	CYB5R1	ENST00000473599	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	CYB5R1	HGNC	ENSG00000159348	51	0	0.00	18	5	21.74	-	-	-
D2HGDH	0	genome.wustl.edu	37	2	242688292	242688292	+	Missense_Mutation	SNP	C	C	T			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	2	242688292	242688292	C	T	SNP	D2HGDH	ENST00000537090	human	ensembl	69_37n	+1	known	missense	c.866	p.P289L	0.001	NULL	pfam_Oxid_FAD_bind_N,superfamily_FAD-bd_2	-	no_errors	D2HGDH	HGNC	ENSG00000180902	101	1	0.98	51	8	13.33	-	-	-
DIAPH1	0	genome.wustl.edu	37	5	140958163	140958163	+	Silent	SNP	G	G	A			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	5	140958163	140958163	G	A	SNP	DIAPH1	ENST00000253811	human	ensembl	69_37n	-1	known	silent	c.963	p.L321	1.000	pfam_Drf_FH3,superfamily_ARM-type_fold	pfam_FH2_actin-bd,pfam_Drf_FH3,pfam_Drf_GTPase-bd,pfam_Formin_homology_1,pfam_Drf_DAD,superfamily_ARM-type_fold,superfamily_FH2_actin-bd,superfamily_tRNA-bd_arm,smart_Actin-bd_FH2/DRF_autoreg	-	no_errors	DIAPH1	HGNC	ENSG00000131504	41	0	0.00	16	11	40.74	-	-	-
EFCAB5	0	genome.wustl.edu	37	17	28268766	28268766	+	RNA	SNP	G	G	T			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	17	28268766	28268766	G	T	SNP	EFCAB5	ENST00000421238	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	EFCAB5	HGNC	ENSG00000176927	22	0	0.00	12	3	20.00	-	-	-
ENSG00000214397	0	genome.wustl.edu	37	15	100256618	100256618	+	Missense_Mutation	SNP	A	A	C			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	15	100256618	100256618	A	C	SNP	ENSG00000214397	ENST00000378904	human	ensembl	69_37n	-1	known	missense	c.385	p.F129V	1.000	NULL	NULL	-	no_errors	AC022692.1	Clone_based_ensembl_gene	ENSG00000214397	57	0	0.00	39	6	13.04	-	-	-
FAM86DP	0	genome.wustl.edu	37	3	75471889	75471889	+	RNA	SNP	A	A	T			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	3	75471889	75471889	A	T	SNP	FAM86DP	ENST00000459803	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	FAM86DP	HGNC	ENSG00000244026	74	0	0.00	42	7	14.29	-	-	-
FGFBP2	0	genome.wustl.edu	37	4	15964208	15964208	+	Missense_Mutation	SNP	G	G	C			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	4	15964208	15964208	G	C	SNP	FGFBP2	ENST00000259989	human	ensembl	69_37n	-1	known	missense	c.545	p.T182R	0.021	pfam_FGF1-bd	pfam_FGF1-bd	-	no_errors	FGFBP2	HGNC	ENSG00000137441	295	0	0.00	116	37	24.18	-	-	-
FKBP9L	0	genome.wustl.edu	37	7	55750390	55750390	+	RNA	SNP	A	A	G			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	7	55750390	55750390	A	G	SNP	FKBP9L	ENST00000455909	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.679	-	-	-	no_errors	FKBP9L	HGNC	ENSG00000176826	207	1	0.48	121	15	11.03	-	-	-
FLJ45832	0	genome.wustl.edu	37	20	29516369	29516369	+	RNA	SNP	A	A	C			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	20	29516369	29516369	A	C	SNP	FLJ45832	ENST00000380888	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.004	-	-	-	no_errors	RP4-610C12.4	Clone_based_vega_gene	ENSG00000205611	63	0	0.00	42	5	10.64	-	-	-
FNDC5	0	genome.wustl.edu	37	1	33328165	33328165	+	RNA	SNP	G	G	A			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	1	33328165	33328165	G	A	SNP	FNDC5	ENST00000481487	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.141	-	-	-	no_errors	FNDC5	HGNC	ENSG00000160097	140	0	0.00	82	12	12.63	-	-	-
GLDC	0	genome.wustl.edu	37	9	6535975	6535975	+	RNA	SNP	G	G	T			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	9	6535975	6535975	G	T	SNP	GLDC	ENST00000477960	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	GLDC	HGNC	ENSG00000178445	49	0	0.00	36	5	11.90	-	-	-
GPR137B	0	genome.wustl.edu	37	1	236385165	236385165	+	RNA	SNP	G	G	C			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	1	236385165	236385165	G	C	SNP	GPR137B	ENST00000477559	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	GPR137B	HGNC	ENSG00000077585	32	0	0.00	40	5	11.11	-	-	-
GSN-AS1	0	genome.wustl.edu	37	9	124044995	124044995	+	RNA	SNP	C	C	T			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	9	124044995	124044995	C	T	SNP	GSN-AS1	ENST00000414544	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	GSN-AS1	HGNC	ENSG00000235865	75	0	0.00	47	8	14.55	-	-	-
GSN-AS1	0	genome.wustl.edu	37	9	124047237	124047237	+	RNA	SNP	T	T	C			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	9	124047237	124047237	T	C	SNP	GSN-AS1	ENST00000414544	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	GSN-AS1	HGNC	ENSG00000235865	166	0	0.00	86	10	10.42	-	-	-
GSTA3	0	genome.wustl.edu	37	6	52768488	52768488	+	Missense_Mutation	SNP	C	C	T			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	6	52768488	52768488	C	T	SNP	GSTA3	ENST00000211122	human	ensembl	69_37n	-1	known	missense	c.125	p.G42E	0.306	pfam_Glutathione_S-Trfase_N,superfamily_Thioredoxin-like_fold	pfam_Glutathione_S-Trfase_N,pfam_GST_C,superfamily_Glutathione-S-Trfase_C-like,superfamily_Thioredoxin-like_fold,prints_GST_alpha	-	no_errors	GSTA3	HGNC	ENSG00000174156	73	0	0.00	46	15	24.19	-	-	-
GSTM2	0	genome.wustl.edu	37	1	110212293	110212293	+	RNA	SNP	C	C	A			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	1	110212293	110212293	C	A	SNP	GSTM2	ENST00000464206	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.456	-	-	-	no_errors	GSTM2	HGNC	ENSG00000213366	14	0	0.00	12	5	29.41	-	-	-
HCG9	0	genome.wustl.edu	37	6	29943269	29943269	+	RNA	SNP	G	G	A			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	6	29943269	29943269	G	A	SNP	HCG9	ENST00000376800	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	HCG9	HGNC	ENSG00000204625	94	0	0.00	48	7	12.50	-	-	-
HLA-F-AS1	0	genome.wustl.edu	37	6	29694570	29694570	+	RNA	SNP	A	A	G			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	6	29694570	29694570	A	G	SNP	HLA-F-AS1	ENST00000399247	human	ensembl	69_37n	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	HLA-F-AS1	HGNC	ENSG00000214922	56	0	0.00	26	5	16.13	-	-	-
HMCN1	0	genome.wustl.edu	37	1	186023072	186023072	+	Silent	SNP	G	G	A			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	1	186023072	186023072	G	A	SNP	HMCN1	ENST00000271588	human	ensembl	69_37n	+1	known	silent	c.6816	p.S2272	0.276	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_G2_nidogen/fibulin_G2F,pfam_EGF-like_Ca-bd,pfam_Thrombospondin_1_rpt,superfamily_Green_fluorescent_prot-like,superfamily_Thrombospondin_1_rpt,superfamily_Growth_fac_rcpt,superfamily_Cadherin-like,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Thrombospondin_1_rpt,smart_G2_nidogen/fibulin_G2F,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like	-	no_errors	HMCN1	HGNC	ENSG00000143341	132	0	0.00	108	28	20.44	-	-	-
HMGN2P46	0	genome.wustl.edu	37	15	45848865	45848865	+	RNA	DEL	C	C	-			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	15	45848865	45848865	C	-	DEL	HMGN2P46	ENST00000409454	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.668	-	-	-	no_errors	HMGN2P46	HGNC	ENSG00000179362	37	0	0.00	8	2	20.00	-	-	-
HYDIN	0	genome.wustl.edu	37	16	70972595	70972595	+	Missense_Mutation	SNP	T	T	C			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	16	70972595	70972595	T	C	SNP	HYDIN	ENST00000316490	human	ensembl	69_37n	-1	known	missense	c.6914	p.E2305G	1.000	NULL	superfamily_PapD-like	-	no_errors	HYDIN	HGNC	ENSG00000157423	146	0	0.00	51	6	10.53	-	-	-
IDH1	0	genome.wustl.edu	37	2	209108313	209108313	+	Missense_Mutation	SNP	G	G	T			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	2	209108313	209108313	G	T	SNP	IDH1	ENST00000345146	human	ensembl	69_37n	-1	known	missense	c.536	p.A179D	1.000	pfam_IsoPropMal-DH-like_dom,pirsf_Isocitrate_DH_NADP_euk-typ,tigrfam_Isocitrate_DH_NADP_euk-typ	pfam_IsoPropMal-DH-like_dom,pirsf_Isocitrate_DH_NADP_euk-typ,tigrfam_Isocitrate_DH_NADP_euk-typ	-	no_errors	IDH1	HGNC	ENSG00000138413	40	0	0.00	24	5	17.24	-	-	-
IGLL5	0	genome.wustl.edu	37	22	23230300	23230300	+	Missense_Mutation	SNP	C	C	T			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	22	23230300	23230300	C	T	SNP	IGLL5	ENST00000532223	human	ensembl	69_37n	+1	known	missense	c.67	p.R23C	0.000	NULL	pfam_Ig_C1-set,pfam_CD80_C2-set,smart_Ig_C1-set,pfscan_Ig-like	-	no_errors	IGLL5	HGNC	ENSG00000254709	169	1	0.59	60	7	10.45	-	-	-
IGLV1-50	0	genome.wustl.edu	37	22	22681721	22681721	+	Missense_Mutation	SNP	T	T	C			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	22	22681721	22681721	T	C	SNP	IGLV1-50	ENST00000390291	human	ensembl	69_37n	+1	known	missense	c.13	p.S5P	0.012	NULL	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like	-	no_stop_codon	IGLV1-50	HGNC	ENSG00000211645	67	0	0.00	25	6	19.35	-	-	-
KIRREL3-AS3	0	genome.wustl.edu	37	11	126873592	126873592	+	RNA	SNP	C	C	T			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	11	126873592	126873592	C	T	SNP	KIRREL3-AS3	ENST00000525678	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.553	-	-	-	no_errors	KIRREL3-AS3	HGNC	ENSG00000218109	128	1	0.78	46	8	14.81	-	-	-
KRT42P	0	genome.wustl.edu	37	17	39795768	39795768	+	RNA	SNP	T	T	C			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	17	39795768	39795768	T	C	SNP	KRT42P	ENST00000398469	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	KRT42P	HGNC	ENSG00000214514	28	0	0.00	22	4	15.38	-	-	-
LINC00238	0	genome.wustl.edu	37	14	66965200	66965200	+	RNA	SNP	G	G	A			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	14	66965200	66965200	G	A	SNP	LINC00238	ENST00000359454	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.628	-	-	-	no_errors	LINC00238	HGNC	ENSG00000196553	38	0	0.00	13	4	23.53	-	-	-
LINC00488	0	genome.wustl.edu	37	3	108897116	108897116	+	RNA	SNP	G	G	A			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	3	108897116	108897116	G	A	SNP	LINC00488	ENST00000494582	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	LINC00488	HGNC	ENSG00000214381	69	0	0.00	37	6	13.95	-	-	-
LRP2	0	genome.wustl.edu	37	2	170115633	170115633	+	Nonsense_Mutation	SNP	G	G	T			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	2	170115633	170115633	G	T	SNP	LRP2	ENST00000263816	human	ensembl	69_37n	-1	known	nonsense	c.2415	p.Y805*	0.250	smart_LDLR_classB_rpt,pfscan_LDLR_classB_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt,superfamily_LDrepeatLR_classA_rpt,superfamily_TIL_dom,smart_LDrepeatLR_classA_rpt,smart_EGF-like,smart_EGF-like_Ca-bd,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP2	HGNC	ENSG00000081479	70	0	0.00	31	5	13.51	-	-	-
MAST2	0	genome.wustl.edu	37	1	46495024	46495024	+	RNA	SNP	G	G	A			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	1	46495024	46495024	G	A	SNP	MAST2	ENST00000477968	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MAST2	HGNC	ENSG00000086015	39	0	0.00	21	6	22.22	-	-	-
MGST3	0	genome.wustl.edu	37	1	165630698	165630698	+	Missense_Mutation	SNP	A	A	G			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	1	165630698	165630698	A	G	SNP	MGST3	ENST00000367888	human	ensembl	69_37n	+1	putative	missense	c.355	p.T119A	0.136	NULL	pfam_Membr-assoc_MAPEG	-	no_errors	MGST3	HGNC	ENSG00000143198	75	0	0.00	61	7	10.29	-	-	-
MUC19	0	genome.wustl.edu	37	12	40938751	40938751	+	RNA	SNP	A	A	G			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	12	40938751	40938751	A	G	SNP	MUC19	ENST00000492952	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	MUC19	HGNC	ENSG00000205592	94	0	0.00	50	6	10.71	-	-	-
MUC5AC	0	genome.wustl.edu	37	11	1213075	1213075	+	RNA	SNP	C	C	G			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	11	1213075	1213075	C	G	SNP	MUC5AC	ENST00000358378	human	ensembl	69_37n	+1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	MUC5AC	HGNC	ENSG00000215182	476	0	0.00	177	25	12.20	-	-	-
MXI1	0	genome.wustl.edu	37	10	112046150	112046150	+	RNA	SNP	T	T	C			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	10	112046150	112046150	T	C	SNP	MXI1	ENST00000485566	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MXI1	HGNC	ENSG00000119950	120	1	0.83	64	11	14.67	-	-	-
MYH14	0	genome.wustl.edu	37	19	50804948	50804948	+	Missense_Mutation	SNP	G	G	A			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	19	50804948	50804948	G	A	SNP	MYH14	ENST00000262269	human	ensembl	69_37n	+1	known	missense	c.5500	p.E1834K	1.000	pfam_Myosin_tail	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,superfamily_Prefoldin,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH14	HGNC	ENSG00000105357	59	0	0.00	27	16	37.21	-	-	-
N4BP1	0	genome.wustl.edu	37	16	48580088	48580088	+	Frame_Shift_Del	DEL	T	T	-			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	16	48580088	48580088	T	-	DEL	N4BP1	ENST00000262384	human	ensembl	69_37n	-1	known	frame_shift_del	c.2303	p.E768fs	1.000	pfam_RNase_Zc3h12	pfam_RNase_Zc3h12	-	no_errors	N4BP1	HGNC	ENSG00000102921	45	0	0.00	10	17	62.96	-	-	-
NFKBIZ	0	genome.wustl.edu	37	3	101571041	101571041	+	Silent	SNP	T	T	G			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	3	101571041	101571041	T	G	SNP	NFKBIZ	ENST00000326172	human	ensembl	69_37n	+1	known	silent	c.402	p.A134	0.977	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	NFKBIZ	HGNC	ENSG00000144802	85	0	0.00	26	21	44.68	-	-	-
NFKBIZ	0	genome.wustl.edu	37	3	101571042	101571042	+	Missense_Mutation	SNP	T	T	G			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	3	101571042	101571042	T	G	SNP	NFKBIZ	ENST00000326172	human	ensembl	69_37n	+1	known	missense	c.403	p.S135A	0.978	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	NFKBIZ	HGNC	ENSG00000144802	84	0	0.00	27	20	42.55	-	-	-
NTRK1	0	genome.wustl.edu	37	1	156836739	156836739	+	Missense_Mutation	SNP	A	A	G			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	1	156836739	156836739	A	G	SNP	NTRK1	ENST00000524377	human	ensembl	69_37n	+1	known	missense	c.397	p.K133E	1.000	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Cys-rich_flank_reg_C,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_Tyr_kinase_neurotrophic_rcpt_1,prints_Tyr_kinase_NGF_rcpt	-	no_errors	NTRK1	HGNC	ENSG00000198400	97	0	0.00	104	17	14.05	-	-	-
OR4C11	0	genome.wustl.edu	37	11	55371242	55371242	+	Missense_Mutation	SNP	G	G	T			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	11	55371242	55371242	G	T	SNP	OR4C11	ENST00000302231	human	ensembl	69_37n	-1	known	missense	c.608	p.A203E	0.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR4C11	HGNC	ENSG00000172188	28	0	0.00	21	5	19.23	-	-	-
OR52K1	0	genome.wustl.edu	37	11	4510827	4510827	+	Missense_Mutation	SNP	C	C	A			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	11	4510827	4510827	C	A	SNP	OR52K1	ENST00000307632	human	ensembl	69_37n	+1	known	missense	c.697	p.Q233K	0.037	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR52K1	HGNC	ENSG00000196778	135	0	0.00	76	24	24.00	-	-	-
PAPLN	0	genome.wustl.edu	37	14	73720533	73720533	+	Missense_Mutation	SNP	G	G	A			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	14	73720533	73720533	G	A	SNP	PAPLN	ENST00000427855	human	ensembl	69_37n	+1	known	missense	c.1166	p.C389Y	1.000	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Ig_I-set,pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_Prot_inh_Kunz-m,pfam_PLAC,superfamily_Prot_inh_Kunz-m,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_Prot_inh_Kunz-m,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,prints_Peptidase_M12B_ADAM-TS,prints_Prot_inh_Kunz-m,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Prot_inh_Kunz-m,pfscan_Ig-like	-	no_errors	PAPLN	HGNC	ENSG00000100767	135	0	0.00	64	25	28.09	-	-	-
PAPPA	0	genome.wustl.edu	37	9	119093538	119093538	+	Missense_Mutation	SNP	G	G	T			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	9	119093538	119093538	G	T	SNP	PAPPA	ENST00000328252	human	ensembl	69_37n	+1	known	missense	c.3163	p.V1055L	1.000	NULL	pfam_Sushi_SCR_CCP,pfam_Notch_dom,pfam_Peptidase_M43,superfamily_ConA-like_lec_gl,superfamily_Complement_control_module,superfamily_Fibronectin_type3,superfamily_Notch_dom,smart_LamG-like,smart_Notch_dom,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP,tigrfam_Myxo_disulph_rpt	-	no_errors	PAPPA	HGNC	ENSG00000182752	49	0	0.00	21	3	12.50	-	-	-
PARPBP	0	genome.wustl.edu	37	12	102517753	102517753	+	Silent	SNP	T	T	C			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	12	102517753	102517753	T	C	SNP	PARPBP	ENST00000358383	human	ensembl	69_37n	+1	known	silent	c.87	p.T29	0.794	NULL	NULL	-	no_errors	PARPBP	HGNC	ENSG00000185480	80	0	0.00	33	4	10.26	-	-	-
PBX2P1	0	genome.wustl.edu	37	3	142896705	142896705	+	RNA	SNP	T	T	G			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	3	142896705	142896705	T	G	SNP	PBX2P1	ENST00000560287	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.227	-	-	-	no_errors	PBX2P1	HGNC	ENSG00000244171	27	0	0.00	9	3	25.00	-	-	-
PCBP1-AS1	0	genome.wustl.edu	37	2	70223947	70223947	+	RNA	SNP	C	C	T			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	2	70223947	70223947	C	T	SNP	PCBP1-AS1	ENST00000413436	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	PCBP1-AS1	HGNC	ENSG00000179818	102	0	0.00	42	18	29.51	-	-	-
PCDH19	0	genome.wustl.edu	37	X	99663147	99663147	+	Missense_Mutation	SNP	A	A	G			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	X	99663147	99663147	A	G	SNP	PCDH19	ENST00000373034	human	ensembl	69_37n	-1	known	missense	c.449	p.L150P	1.000	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH19	HGNC	ENSG00000165194	59	0	0.00	34	8	19.05	-	-	-
PCDHA1	0	genome.wustl.edu	37	5	140167486	140167486	+	Silent	SNP	G	G	A			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	5	140167486	140167486	G	A	SNP	PCDHA1	ENST00000504120	human	ensembl	69_37n	+1	known	silent	c.1611	p.A537	0.022	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA1	HGNC	ENSG00000204970	225	1	0.44	72	32	30.77	-	-	-
PCDHB18	0	genome.wustl.edu	37	5	140615269	140615269	+	RNA	SNP	A	A	G			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	5	140615269	140615269	A	G	SNP	PCDHB18	ENST00000526308	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	PCDHB18	HGNC	ENSG00000146001	86	0	0.00	60	7	10.45	-	-	-
PCNXL2	0	genome.wustl.edu	37	1	233394471	233394471	+	Silent	SNP	C	C	T			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	1	233394471	233394471	C	T	SNP	PCNXL2	ENST00000258229	human	ensembl	69_37n	-1	known	silent	c.1137	p.T379	0.780	NULL	pfam_Pecanex,superfamily_Pept_cys/ser_Trypsin-like	-	no_errors	PCNXL2	HGNC	ENSG00000135749	94	0	0.00	66	19	22.09	-	-	-
PDE4DIP	0	genome.wustl.edu	37	1	145039922	145039922	+	RNA	SNP	G	G	C			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	1	145039922	145039922	G	C	SNP	PDE4DIP	ENST00000497529	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.016	-	-	-	no_errors	PDE4DIP	HGNC	ENSG00000178104	10	0	0.00	13	4	23.53	-	-	-
PDHA1	0	genome.wustl.edu	37	X	19377881	19377881	+	RNA	SNP	C	C	T			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	X	19377881	19377881	C	T	SNP	PDHA1	ENST00000478795	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	PDHA1	HGNC	ENSG00000131828	32	0	0.00	20	4	16.67	-	-	-
PDLIM5	0	genome.wustl.edu	37	4	95505975	95505975	+	RNA	SNP	C	C	T			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	4	95505975	95505975	C	T	SNP	PDLIM5	ENST00000380176	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	PDLIM5	HGNC	ENSG00000163110	69	0	0.00	58	8	12.12	-	-	-
PHC2	0	genome.wustl.edu	37	1	33789520	33789520	+	RNA	SNP	C	C	A			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	1	33789520	33789520	C	A	SNP	PHC2	ENST00000485928	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	PHC2	HGNC	ENSG00000134686	18	0	0.00	2	4	66.67	-	-	-
PIK3CA	0	genome.wustl.edu	37	3	178936091	178936091	+	Missense_Mutation	SNP	G	G	A			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	3	178936091	178936091	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	+1	known	missense	c.1633	p.E545K	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	71	0	0.00	41	26	38.81	-	-	-
PITPNM1	0	genome.wustl.edu	37	11	67263648	67263648	+	Splice_Site	SNP	C	C	T			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	11	67263648	67263648	C	T	SNP	PITPNM1	ENST00000356404	human	ensembl	69_37n	-1	known	splice_site	c.2317+1	e14+1	1.000	-	-	-	no_errors	PITPNM1	HGNC	ENSG00000110697	56	0	0.00	17	11	39.29	-	-	-
PLEKHA2	0	genome.wustl.edu	37	8	38809739	38809739	+	Missense_Mutation	SNP	G	G	T			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	8	38809739	38809739	G	T	SNP	PLEKHA2	ENST00000420274	human	ensembl	69_37n	+1	known	missense	c.542	p.R181M	1.000	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	PLEKHA2	HGNC	ENSG00000169499	44	0	0.00	30	4	11.76	-	-	-
PLEKHH3	0	genome.wustl.edu	37	17	40824270	40824270	+	Missense_Mutation	SNP	G	G	T			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	17	40824270	40824270	G	T	SNP	PLEKHH3	ENST00000591022	human	ensembl	69_37n	-1	known	missense	c.910	p.L304I	1.000	pfam_MyTH4_dom,smart_MyTH4_dom,pfscan_MyTH4_dom	pfam_MyTH4_dom,pfam_FERM_central,pfam_Ras-assoc,superfamily_FERM_central,smart_Pleckstrin_homology,smart_MyTH4_dom,smart_Band_41_domain,pfscan_FERM_domain,pfscan_MyTH4_dom,pfscan_Pleckstrin_homology	-	no_errors	PLEKHH3	HGNC	ENSG00000068137	70	0	0.00	43	5	10.42	-	-	-
PLOD3	0	genome.wustl.edu	37	7	100861213	100861213	+	Missense_Mutation	SNP	T	T	C			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	7	100861213	100861213	T	C	SNP	PLOD3	ENST00000414785	human	ensembl	69_37n	-1	putative	missense	c.38	p.Q13R	0.000	NULL	NULL	-	no_stop_codon:bad_bp_length_for_coding_region	PLOD3	HGNC	ENSG00000106397	69	0	0.00	29	4	12.12	-	-	-
POM121L1P	0	genome.wustl.edu	37	22	22985443	22985443	+	Missense_Mutation	SNP	G	G	C			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	22	22985443	22985443	G	C	SNP	POM121L1P	ENST00000402027	human	ensembl	69_37n	-1	putative	missense	c.1114	p.P372A	0.996	NULL	NULL	-	no_errors	POM121L1P	HGNC	ENSG00000183169	121	0	0.00	50	7	12.28	-	-	-
POMGNT1	0	genome.wustl.edu	37	1	46657651	46657651	+	RNA	SNP	T	T	C			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	1	46657651	46657651	T	C	SNP	POMGNT1	ENST00000463030	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	POMGNT1	HGNC	ENSG00000085998	47	0	0.00	36	4	10.00	-	-	-
PRDM13	0	genome.wustl.edu	37	6	100062278	100062278	+	Missense_Mutation	SNP	G	G	T			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	6	100062278	100062278	G	T	SNP	PRDM13	ENST00000369214	human	ensembl	69_37n	+1	known	missense	c.1797	p.K599N	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	PRDM13	HGNC	ENSG00000112238	92	0	0.00	34	4	10.53	-	-	-
PRR21	0	genome.wustl.edu	37	2	240982116	240982116	+	Missense_Mutation	SNP	C	C	A			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	2	240982116	240982116	C	A	SNP	PRR21	ENST00000408934	human	ensembl	69_37n	-1	known	missense	c.284	p.R95L	0.000	NULL	NULL	-	no_errors	PRR21	HGNC	ENSG00000221961	29	0	0.00	17	6	26.09	-	-	-
PRRC2C	0	genome.wustl.edu	37	1	171557613	171557613	+	Missense_Mutation	SNP	C	C	T			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	1	171557613	171557613	C	T	SNP	PRRC2C	ENST00000392078	human	ensembl	69_37n	+1	known	missense	c.8168	p.T2723I	1.000	NULL	pfam_BAT2_N	-	no_errors	PRRC2C	HGNC	ENSG00000117523	90	0	0.00	85	27	24.11	-	-	-
PRSS51	0	genome.wustl.edu	37	8	10356183	10356183	+	RNA	SNP	C	C	T			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	8	10356183	10356183	C	T	SNP	PRSS51	ENST00000523024	human	ensembl	69_37n	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	PRSS51	HGNC	ENSG00000253649	64	0	0.00	35	5	12.50	-	-	-
RAD9A	0	genome.wustl.edu	37	11	67165622	67165622	+	RNA	SNP	C	C	T			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	11	67165622	67165622	C	T	SNP	RAD9A	ENST00000535644	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.180	-	-	-	no_errors	RAD9A	HGNC	ENSG00000172613	67	0	0.00	57	8	12.31	-	-	-
RBM14	0	genome.wustl.edu	37	11	66384361	66384361	+	Missense_Mutation	SNP	G	G	T			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	11	66384361	66384361	G	T	SNP	RBM14	ENST00000310137	human	ensembl	69_37n	+1	known	missense	c.170	p.G57V	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM14	HGNC	ENSG00000239306	73	0	0.00	31	4	11.43	-	-	-
RFPL2	0	genome.wustl.edu	37	22	32587023	32587023	+	Silent	SNP	C	C	G			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	22	32587023	32587023	C	G	SNP	RFPL2	ENST00000400237	human	ensembl	69_37n	-1	known	silent	c.873	p.T291	0.003	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY	pfam_RDM_domain_RFPL,pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,smart_PRY,smart_SPla/RYanodine_receptor_subgr,prints_Butyrophylin,pfscan_B30.2/SPRY	-	no_errors	RFPL2	HGNC	ENSG00000128253	212	1	0.47	83	13	13.54	-	-	-
RFPL4A	0	genome.wustl.edu	37	19	56274213	56274213	+	Missense_Mutation	SNP	T	T	A			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	19	56274213	56274213	T	A	SNP	RFPL4A	ENST00000434937	human	ensembl	69_37n	+1	novel	missense	c.536	p.V179E	0.000	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY	pfam_RDM_domain_RFPL,pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	RFPL4A	HGNC	ENSG00000223638	51	0	0.00	19	3	13.64	-	-	-
RNA5SP392	0	genome.wustl.edu	37	15	40623824	40623824	+	RNA	SNP	A	A	G			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	15	40623824	40623824	A	G	SNP	RNA5SP392	ENST00000516905	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RNA5SP392	HGNC	ENSG00000252714	26	0	0.00	21	4	16.00	-	-	-
RPL13P5	0	genome.wustl.edu	37	12	6993653	6993653	+	RNA	SNP	G	G	A			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	12	6993653	6993653	G	A	SNP	RPL13P5	ENST00000412023	human	ensembl	69_37n	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RPL13P5	HGNC	ENSG00000240370	29	0	0.00	20	6	23.08	-	-	-
SECISBP2	0	genome.wustl.edu	37	9	91965711	91965711	+	Missense_Mutation	SNP	T	T	C			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	9	91965711	91965711	T	C	SNP	SECISBP2	ENST00000375807	human	ensembl	69_37n	+1	known	missense	c.2057	p.L686P	1.000	pfam_Ribosomal_L7Ae/L30e/S12e/Gad45	pfam_Ribosomal_L7Ae/L30e/S12e/Gad45	-	no_errors	SECISBP2	HGNC	ENSG00000187742	70	0	0.00	25	12	30.77	-	-	-
SERINC5	0	genome.wustl.edu	37	5	79439630	79439630	+	Silent	SNP	G	G	A			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	5	79439630	79439630	G	A	SNP	SERINC5	ENST00000512721	human	ensembl	69_37n	-1	novel	silent	c.1242	p.Y414	0.984	pfam_TMS_TDE	pfam_TMS_TDE	-	no_errors	SERINC5	HGNC	ENSG00000164300	29	0	0.00	18	4	18.18	-	-	-
SH3BP4	0	genome.wustl.edu	37	2	235951482	235951482	+	Missense_Mutation	SNP	G	G	T			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	2	235951482	235951482	G	T	SNP	SH3BP4	ENST00000344528	human	ensembl	69_37n	+1	known	missense	c.2069	p.R690L	1.000	pfam_SH3_2	pfam_SH3_2,pfam_SH3_domain,pfam_ZU5,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	SH3BP4	HGNC	ENSG00000130147	35	0	0.00	15	4	21.05	-	-	-
SIGLEC16	0	genome.wustl.edu	37	19	50472930	50472930	+	Missense_Mutation	SNP	C	C	T			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	19	50472930	50472930	C	T	SNP	SIGLEC16	ENST00000417280	human	ensembl	69_37n	+1	known	missense	c.8	p.P3L	0.000	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_stop_codon	SIGLEC16	HGNC	ENSG00000161643	31	0	0.00	9	3	25.00	-	-	-
SLC13A3	0	genome.wustl.edu	37	20	45242260	45242260	+	Silent	SNP	G	G	A			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	20	45242260	45242260	G	A	SNP	SLC13A3	ENST00000279027	human	ensembl	69_37n	-1	known	silent	c.216	p.F72	0.890	pfam_Na/sul_symport,pfam_Cit_transptr-like_dom	pfam_Na/sul_symport,pfam_Cit_transptr-like_dom	-	no_errors	SLC13A3	HGNC	ENSG00000158296	46	0	0.00	32	8	19.51	-	-	-
SLC35F5	0	genome.wustl.edu	37	2	114483094	114483094	+	Missense_Mutation	SNP	G	G	T			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	2	114483094	114483094	G	T	SNP	SLC35F5	ENST00000245680	human	ensembl	69_37n	-1	known	missense	c.1111	p.L371M	1.000	NULL	pfam_DMT	-	no_errors	SLC35F5	HGNC	ENSG00000115084	35	0	0.00	30	4	11.76	-	-	-
SLC39A14	0	genome.wustl.edu	37	8	22272415	22272415	+	Missense_Mutation	SNP	G	G	C			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	8	22272415	22272415	G	C	SNP	SLC39A14	ENST00000359741	human	ensembl	69_37n	+1	known	missense	c.750	p.E250D	1.000	pfam_ZIP	pfam_ZIP	-	no_errors	SLC39A14	HGNC	ENSG00000104635	99	0	0.00	31	17	35.42	-	-	-
SOS2	0	genome.wustl.edu	37	14	50623685	50623685	+	RNA	SNP	A	A	G			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	14	50623685	50623685	A	G	SNP	SOS2	ENST00000555794	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	SOS2	HGNC	ENSG00000100485	156	1	0.64	52	6	10.34	-	-	-
SPRED2	0	genome.wustl.edu	37	2	65561392	65561392	+	Silent	SNP	C	C	T			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	2	65561392	65561392	C	T	SNP	SPRED2	ENST00000426832	human	ensembl	69_37n	-1	known	silent	c.258	p.E86	0.254	NULL	pfam_EVH1,pfscan_EVH1	-	no_start_codon	SPRED2	HGNC	ENSG00000198369	25	0	0.00	29	6	17.14	-	-	-
STX16-NPEPL1	0	genome.wustl.edu	37	20	57266134	57266134	+	Silent	SNP	G	G	A			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	20	57266134	57266134	G	A	SNP	STX16-NPEPL1	ENST00000530122	human	ensembl	69_37n	+1	known	silent	c.918	p.L306	0.019	NULL	pfam_T_SNARE_dom,pfam_Syntaxin_N,superfamily_t-SNARE,smart_T_SNARE_dom,pfscan_T_SNARE_dom	-	no_errors	STX16-NPEPL1	HGNC	ENSG00000254995	65	0	0.00	48	6	11.11	-	-	-
TDH	0	genome.wustl.edu	37	8	11222474	11222474	+	RNA	SNP	G	G	A			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	8	11222474	11222474	G	A	SNP	TDH	ENST00000525246	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.974	-	-	-	no_errors	TDH	HGNC	ENSG00000154316	63	0	0.00	26	12	31.58	-	-	-
THNSL2	0	genome.wustl.edu	37	2	88482535	88482535	+	Silent	SNP	C	C	T			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	2	88482535	88482535	C	T	SNP	THNSL2	ENST00000324166	human	ensembl	69_37n	+1	known	silent	c.1020	p.L340	1.000	pfam_PyrdxlP-dep_enz_bsu,superfamily_PyrdxlP-dep_enz_bsu,tigrfam_Thr_synthase	pfam_PyrdxlP-dep_enz_bsu,superfamily_PyrdxlP-dep_enz_bsu,tigrfam_Thr_synthase	-	no_errors	THNSL2	HGNC	ENSG00000144115	95	0	0.00	31	13	29.55	-	-	-
THOC2	0	genome.wustl.edu	37	X	122766800	122766800	+	Missense_Mutation	SNP	C	C	A			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	X	122766800	122766800	C	A	SNP	THOC2	ENST00000245838	human	ensembl	69_37n	-1	known	missense	c.2228	p.C743F	1.000	NULL	pfam_THO_THOC2_C,pfam_THO_THOC2_N	-	no_errors	THOC2	HGNC	ENSG00000125676	89	0	0.00	44	29	39.73	-	-	-
TMEM247	0	genome.wustl.edu	37	2	46707884	46707884	+	Missense_Mutation	SNP	A	A	G			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	2	46707884	46707884	A	G	SNP	TMEM247	ENST00000434431	human	ensembl	69_37n	+1	known	missense	c.458	p.Q153R	0.238	NULL	NULL	-	no_stop_codon:bad_bp_length_for_coding_region	TMEM247	HGNC	ENSG00000187600	25	0	0.00	15	4	21.05	-	-	-
TNFRSF14	0	genome.wustl.edu	37	1	2494785	2494785	+	RNA	SNP	G	G	A			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	1	2494785	2494785	G	A	SNP	TNFRSF14	ENST00000480305	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	TNFRSF14	HGNC	ENSG00000157873	17	0	0.00	12	4	25.00	-	-	-
TTC3	0	genome.wustl.edu	37	21	38460338	38460338	+	RNA	SNP	T	T	A			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	21	38460338	38460338	T	A	SNP	TTC3	ENST00000484047	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	TTC3	HGNC	ENSG00000182670	31	0	0.00	18	4	17.39	-	-	-
UBL5	0	genome.wustl.edu	37	19	9939519	9939519	+	Missense_Mutation	SNP	G	G	A			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	19	9939519	9939519	G	A	SNP	UBL5	ENST00000593087	human	ensembl	69_37n	+1	putative	missense	c.59	p.R20Q	0.994	NULL	NULL	-	no_errors	UBL5	HGNC	ENSG00000198258	99	0	0.00	41	27	39.71	-	-	-
UPF3B	0	genome.wustl.edu	37	X	118975127	118975129	+	In_Frame_Del	DEL	TCT	TCT	-			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	TCT	TCT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	X	118975127	118975129	TCT	-	DEL	UPF3B	ENST00000276201	human	ensembl	69_37n	-1	known	in_frame_del	c.719_717	p.E240in_frame_del	1.000:0.998:0.916	NULL	pfam_Nonsense_mediated_decay_UPF3	-	no_errors	UPF3B	HGNC	ENSG00000125351	160	0	0.00	95	26	21.49	-	-	-
USP41	0	genome.wustl.edu	37	22	20723832	20723832	+	Missense_Mutation	SNP	T	T	C			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	22	20723832	20723832	T	C	SNP	USP41	ENST00000454608	human	ensembl	69_37n	-1	known	missense	c.514	p.M172V	0.500	pfam_Peptidase_C19,pfscan_Peptidase_C19	pfam_Peptidase_C19,pfscan_Peptidase_C19	-	no_stop_codon	USP41	HGNC	ENSG00000161133	90	0	0.00	36	4	10.00	-	-	-
VASN	0	genome.wustl.edu	37	16	4431228	4431228	+	Missense_Mutation	SNP	A	A	G			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	16	4431228	4431228	A	G	SNP	VASN	ENST00000304735	human	ensembl	69_37n	+1	known	missense	c.350	p.N117S	0.999	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_LRR-contain_N,superfamily_Fibronectin_type3,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_EGF-like,pfscan_EG-like_dom,pfscan_Fibronectin_type3	-	no_errors	VASN	HGNC	ENSG00000168140	132	0	0.00	79	20	20.00	-	-	-
VPS52	0	genome.wustl.edu	37	6	33232055	33232055	+	RNA	SNP	G	G	A			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	6	33232055	33232055	G	A	SNP	VPS52	ENST00000493674	human	ensembl	69_37n	-1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	VPS52	HGNC	ENSG00000223501	50	0	0.00	32	6	15.79	-	-	-
YLPM1	0	genome.wustl.edu	37	14	75265389	75265390	+	Frame_Shift_Ins	INS	-	-	T			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	14	75265389	75265390	-	T	INS	YLPM1	ENST00000325680	human	ensembl	69_37n	+1	known	frame_shift_ins	c.3389_3390	p.R1131fs	1.000:0.998	NULL	superfamily_FH2_actin-bd	-	no_errors	YLPM1	HGNC	ENSG00000119596	39	0	0.00	18	6	25.00	-	-	-
ZDHHC8P1	0	genome.wustl.edu	37	22	23734930	23734930	+	RNA	SNP	G	G	A			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	22	23734930	23734930	G	A	SNP	ZDHHC8P1	ENST00000420968	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	ZDHHC8P1	HGNC	ENSG00000133519	89	0	0.00	22	6	21.43	-	-	-
ZNF251	0	genome.wustl.edu	37	8	145947639	145947639	+	Missense_Mutation	SNP	G	G	T			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	8	145947639	145947639	G	T	SNP	ZNF251	ENST00000292562	human	ensembl	69_37n	-1	known	missense	c.1406	p.A469D	0.998	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF251	HGNC	ENSG00000198169	43	0	0.00	34	4	10.53	-	-	-
ZNF300P1	0	genome.wustl.edu	37	5	150311080	150311080	+	RNA	SNP	T	T	A			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	5	150311080	150311080	T	A	SNP	ZNF300P1	ENST00000520773	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.855	-	-	-	no_errors	ZNF300P1	HGNC	ENSG00000197083	68	0	0.00	39	5	11.36	-	-	-
ZNF705G	0	genome.wustl.edu	37	8	7217172	7217172	+	Missense_Mutation	SNP	G	G	A			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	8	7217172	7217172	G	A	SNP	ZNF705G	ENST00000400078	human	ensembl	69_37n	-1	known	missense	c.287	p.T96I	0.010	NULL	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF705G	HGNC	ENSG00000215372	292	1	0.34	185	23	11.06	-	-	-
ZNF705G	0	genome.wustl.edu	37	8	7218752	7218752	+	Missense_Mutation	SNP	G	G	C			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	8	7218752	7218752	G	C	SNP	ZNF705G	ENST00000400078	human	ensembl	69_37n	-1	known	missense	c.19	p.L7V	0.747	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF705G	HGNC	ENSG00000215372	296	1	0.34	187	29	13.30	-	-	-
ZNF711	0	genome.wustl.edu	37	X	84525714	84525715	+	Frame_Shift_Ins	INS	-	-	A			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	X	84525714	84525715	-	A	INS	ZNF711	ENST00000395402	human	ensembl	69_37n	+1	known	frame_shift_ins	c.1190_1191	p.F400fs	1.000:0.997	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Transcrp_activ_Zfx/Zfy-dom,pfam_Znf_C2H2,pfam_Znf_C2H2_jaz,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF711	HGNC	ENSG00000147180	53	0	0.00	38	14	26.92	-	-	-
ZNF90	0	genome.wustl.edu	37	19	20235929	20235929	+	RNA	SNP	G	G	A			TCGA-GM-A3NY-01A-11D-A21Q-09	TCGA-GM-A3NY-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	557eca26-6d1f-4df9-9b50-c1a73bd5e38b	41d20e34-7c68-4855-bc43-d8141c29b2d9	19	20235929	20235929	G	A	SNP	ZNF90	ENST00000474284	human	ensembl	69_37n	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	ZNF90	HGNC	ENSG00000213988	67	0	0.00	38	5	11.63	-	-	-
