Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values
NPHP4	261734	broad.mit.edu	37	1	5923345	5923345	+	Missense_Mutation	SNP	C	C	T			TCGA-HU-A4G3-01A-11D-A24D-08	TCGA-HU-A4G3-10A-01D-A24F-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d83776d-2358-427a-bc55-0ae429559d41	bbf11eb7-0258-4973-be54-d8dd4e11baf1	g.chr1:5923345C>T	uc001alq.1	-	30	4527	c.4261G>A	c.(4261-4263)GTG>ATG	p.V1421M	NPHP4_uc001alr.1_3'UTR	NM_015102	NP_055917	O75161	NPHP4_HUMAN	nephroretinin	1421					actin cytoskeleton organization|cell-cell adhesion|signal transduction|visual behavior	cell-cell junction|centrosome|cilium|microtubule basal body	protein binding|structural molecule activity			pancreas(1)	1	Ovarian(185;0.0634)	all_cancers(23;7.53e-41)|all_epithelial(116;3.96e-23)|all_lung(118;5.12e-09)|all_hematologic(16;5.45e-07)|Lung NSC(185;5.49e-07)|all_neural(13;3.21e-06)|Acute lymphoblastic leukemia(12;3.44e-05)|Breast(487;0.000601)|Renal(390;0.0007)|Colorectal(325;0.00113)|Hepatocellular(190;0.00213)|Glioma(11;0.00223)|Myeloproliferative disorder(586;0.0256)|Ovarian(437;0.04)|Lung SC(97;0.128)|Medulloblastoma(700;0.213)		Epithelial(90;1.69e-36)|GBM - Glioblastoma multiforme(13;5.07e-29)|OV - Ovarian serous cystadenocarcinoma(86;1.05e-19)|Colorectal(212;4.54e-07)|COAD - Colon adenocarcinoma(227;3.14e-05)|Kidney(185;0.00012)|BRCA - Breast invasive adenocarcinoma(365;0.00102)|KIRC - Kidney renal clear cell carcinoma(229;0.00179)|STAD - Stomach adenocarcinoma(132;0.00472)|READ - Rectum adenocarcinoma(331;0.0649)		ATGACCTTCACGCAAAATGCC	0.582000												
EPHA8	2046	broad.mit.edu	37	1	22925447	22925447	+	Silent	SNP	C	C	T			TCGA-HU-A4G3-01A-11D-A24D-08	TCGA-HU-A4G3-10A-01D-A24F-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d83776d-2358-427a-bc55-0ae429559d41	bbf11eb7-0258-4973-be54-d8dd4e11baf1	g.chr1:22925447C>T	uc001bfx.1	+	13	2420	c.2295C>T	c.(2293-2295)AAC>AAT	p.N765N		NM_020526	NP_065387	P29322	EPHA8_HUMAN	ephrin receptor EphA8 isoform 1 precursor	765	Cytoplasmic (Potential).|Protein kinase.					integral to plasma membrane	ATP binding|ephrin receptor activity			central_nervous_system(5)|breast(3)|lung(2)|large_intestine(1)|stomach(1)|skin(1)	13		Colorectal(325;3.46e-05)|Lung NSC(340;6.55e-05)|all_lung(284;9.87e-05)|Renal(390;0.000219)|Breast(348;0.00222)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0227)|OV - Ovarian serous cystadenocarcinoma(117;7.29e-27)|Colorectal(126;1.61e-07)|COAD - Colon adenocarcinoma(152;1.14e-05)|GBM - Glioblastoma multiforme(114;1.74e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000554)|KIRC - Kidney renal clear cell carcinoma(1967;0.00272)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.199)		CCGCCCGCAACGTCCTGGTTG	0.637000												
ARID1A	8289	broad.mit.edu	37	1	27106861	27106861	+	Nonsense_Mutation	SNP	C	C	T			TCGA-HU-A4G3-01A-11D-A24D-08	TCGA-HU-A4G3-10A-01D-A24F-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d83776d-2358-427a-bc55-0ae429559d41	bbf11eb7-0258-4973-be54-d8dd4e11baf1	g.chr1:27106861C>T	uc001bmv.1	+	20	6845	c.6472C>T	c.(6472-6474)CGA>TGA	p.R2158*	ARID1A_uc001bmu.1_Nonsense_Mutation_p.R1941*|ARID1A_uc001bmx.1_Nonsense_Mutation_p.R1004*|ARID1A_uc009vsm.1_Nonsense_Mutation_p.R486*|ARID1A_uc009vsn.1_Nonsense_Mutation_p.R400*	NM_006015	NP_006006	O14497	ARI1A_HUMAN	AT rich interactive domain 1A isoform a	2158					androgen receptor signaling pathway|chromatin-mediated maintenance of transcription|estrogen receptor signaling pathway|glucocorticoid receptor signaling pathway|nervous system development|nucleosome mobilization|transcription, DNA-dependent	nBAF complex|npBAF complex|SWI/SNF complex	DNA binding|protein binding	p.R2158*(1)		ovary(124)|pancreas(5)|central_nervous_system(3)|endometrium(3)|kidney(3)|skin(2)|upper_aerodigestive_tract(1)|lung(1)	142		all_cancers(24;6.36e-27)|all_epithelial(13;5.93e-24)|Colorectal(325;3.46e-05)|all_lung(284;4.76e-05)|Lung NSC(340;5.83e-05)|Breast(348;9.7e-05)|Renal(390;0.0007)|Ovarian(437;0.00473)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|all cancers(4;2.61e-56)|Epithelial(14;7.53e-55)|OV - Ovarian serous cystadenocarcinoma(117;4.5e-30)|Colorectal(126;2.07e-09)|COAD - Colon adenocarcinoma(152;4.29e-07)|BRCA - Breast invasive adenocarcinoma(304;4.13e-05)|STAD - Stomach adenocarcinoma(196;0.000279)|KIRC - Kidney renal clear cell carcinoma(1967;0.000794)|GBM - Glioblastoma multiforme(114;0.0132)|READ - Rectum adenocarcinoma(331;0.0469)|Lung(427;0.167)|LUSC - Lung squamous cell carcinoma(448;0.242)		CCTCAGTGACCGAAAGAACCC	0.597000			Mis|N|F|S|D		clear cell ovarian carcinoma|RCC							
CSMD2	114784	broad.mit.edu	37	1	34312570	34312570	+	Silent	SNP	G	G	A	rs150632282	byFrequency	TCGA-HU-A4G3-01A-11D-A24D-08	TCGA-HU-A4G3-10A-01D-A24F-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d83776d-2358-427a-bc55-0ae429559d41	bbf11eb7-0258-4973-be54-d8dd4e11baf1	g.chr1:34312570G>A	uc001bxn.1	-	6	857	c.828C>T	c.(826-828)CCC>CCT	p.P276P	CSMD2_uc001bxm.1_Silent_p.P316P	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	276	CUB 2.|Extracellular (Potential).					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				TGCTGATAACGGGGGCTGGGA	0.587000												
MPL	4352	broad.mit.edu	37	1	43804274	43804274	+	Missense_Mutation	SNP	G	G	A			TCGA-HU-A4G3-01A-11D-A24D-08	TCGA-HU-A4G3-10A-01D-A24F-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d83776d-2358-427a-bc55-0ae429559d41	bbf11eb7-0258-4973-be54-d8dd4e11baf1	g.chr1:43804274G>A	uc001ciw.2	+	3	319	c.274G>A	c.(274-276)GTG>ATG	p.V92M	MPL_uc001civ.2_Missense_Mutation_p.V92M|MPL_uc009vwr.2_Missense_Mutation_p.V85M	NM_005373	NP_005364	P40238	TPOR_HUMAN	myeloproliferative leukemia virus oncogene	92	Extracellular (Potential).				cell proliferation|platelet activation	integral to plasma membrane	cytokine receptor activity			haematopoietic_and_lymphoid_tissue(361)|upper_aerodigestive_tract(1)|pancreas(1)	363	all_hematologic(146;0.0958)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0505)				AACCCGATACGTGTGCCAGTT	0.567000			Mis		MPD	MPD	congenital amegakaryocytic thrombocytopenia					
MTMR11	10903	broad.mit.edu	37	1	149905551	149905551	+	Missense_Mutation	SNP	C	C	A			TCGA-HU-A4G3-01A-11D-A24D-08	TCGA-HU-A4G3-10A-01D-A24F-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d83776d-2358-427a-bc55-0ae429559d41	bbf11eb7-0258-4973-be54-d8dd4e11baf1	g.chr1:149905551C>A	uc001etl.3	-	9	1063	c.812G>T	c.(811-813)CGC>CTC	p.R271L	MTMR11_uc001etm.1_Missense_Mutation_p.R199L|MTMR11_uc010pbm.1_Missense_Mutation_p.R243L|MTMR11_uc010pbn.1_Missense_Mutation_p.R113L	NM_001145862	NP_001139334	A4FU01	MTMRB_HUMAN	myotubularin related protein 11 isoform a	271	Myotubularin phosphatase.						phosphatase activity			central_nervous_system(1)	1	Breast(34;0.0009)|Ovarian(49;0.0377)|all_hematologic(923;0.0597)|Hepatocellular(266;0.161)|Colorectal(459;0.171)		LUSC - Lung squamous cell carcinoma(543;0.221)|STAD - Stomach adenocarcinoma(528;0.247)			GCCTCCACAGCGGAGAAGATC	0.547000												
FLG2	388698	broad.mit.edu	37	1	152327451	152327451	+	Missense_Mutation	SNP	T	T	G			TCGA-HU-A4G3-01A-11D-A24D-08	TCGA-HU-A4G3-10A-01D-A24F-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d83776d-2358-427a-bc55-0ae429559d41	bbf11eb7-0258-4973-be54-d8dd4e11baf1	g.chr1:152327451T>G	uc001ezw.3	-	3	2884	c.2811A>C	c.(2809-2811)CAA>CAC	p.Q937H	uc001ezv.2_Intron	NM_001014342	NP_001014364	Q5D862	FILA2_HUMAN	filaggrin family member 2	937	Ser-rich.						calcium ion binding|structural molecule activity			ovary(10)|skin(5)|upper_aerodigestive_tract(1)|breast(1)	17	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			TTGACCCATGTTGACCATAGC	0.483000												
ARHGEF2	9181	broad.mit.edu	37	1	155932779	155932779	+	Missense_Mutation	SNP	G	G	T	rs146373060		TCGA-HU-A4G3-01A-11D-A24D-08	TCGA-HU-A4G3-10A-01D-A24F-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d83776d-2358-427a-bc55-0ae429559d41	bbf11eb7-0258-4973-be54-d8dd4e11baf1	g.chr1:155932779G>T	uc001fmt.2	-	8	1038	c.920C>A	c.(919-921)CCT>CAT	p.P307H	ARHGEF2_uc001fmr.2_Missense_Mutation_p.P279H|ARHGEF2_uc001fms.2_Missense_Mutation_p.P306H|ARHGEF2_uc001fmu.2_Missense_Mutation_p.P351H|ARHGEF2_uc010pgt.1_Missense_Mutation_p.P280H|ARHGEF2_uc010pgu.1_Missense_Mutation_p.P352H	NM_001162383	NP_001155855	Q92974	ARHG2_HUMAN	Rho/Rac guanine nucleotide exchange factor 2	307	DH.				actin filament organization|apoptosis|cell division|cell morphogenesis|induction of apoptosis by extracellular signals|intracellular protein transport|mitosis|negative regulation of microtubule depolymerization|nerve growth factor receptor signaling pathway|positive regulation of NF-kappaB transcription factor activity|regulation of cell proliferation|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|Golgi apparatus|microtubule|ruffle membrane|spindle|tight junction	microtubule binding|Rac GTPase binding|Rac guanyl-nucleotide exchange factor activity|zinc ion binding			ovary(1)	1	Hepatocellular(266;0.133)|all_hematologic(923;0.145)|all_neural(408;0.195)					GGTGCTGCCAGGGCACAGGGC	0.602000												
CD1B	910	broad.mit.edu	37	1	158299360	158299360	+	Missense_Mutation	SNP	A	A	T			TCGA-HU-A4G3-01A-11D-A24D-08	TCGA-HU-A4G3-10A-01D-A24F-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d83776d-2358-427a-bc55-0ae429559d41	bbf11eb7-0258-4973-be54-d8dd4e11baf1	g.chr1:158299360A>T	uc001frx.2	-	4	794	c.686T>A	c.(685-687)TTC>TAC	p.F229Y	CD1B_uc001frw.2_Missense_Mutation_p.F122Y	NM_001764	NP_001755	P29016	CD1B_HUMAN	CD1B antigen precursor	229	Extracellular (Potential).|Ig-like.				antigen processing and presentation|immune response	endosome membrane|integral to membrane|lysosomal membrane|plasma membrane	protein binding			ovary(2)	2	all_hematologic(112;0.0378)					CTTTGGGTAGAATCCTGAGAC	0.582000												
CACNA1E	777	broad.mit.edu	37	1	181741317	181741317	+	Missense_Mutation	SNP	G	G	T			TCGA-HU-A4G3-01A-11D-A24D-08	TCGA-HU-A4G3-10A-01D-A24F-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d83776d-2358-427a-bc55-0ae429559d41	bbf11eb7-0258-4973-be54-d8dd4e11baf1	g.chr1:181741317G>T	uc001gow.2	+	37	5254	c.5089G>T	c.(5089-5091)GAT>TAT	p.D1697Y	CACNA1E_uc009wxs.2_Missense_Mutation_p.D1585Y|CACNA1E_uc001gox.1_Missense_Mutation_p.D923Y|CACNA1E_uc009wxt.2_Missense_Mutation_p.D923Y	NM_000721	NP_000712	Q15878	CAC1E_HUMAN	calcium channel, voltage-dependent, R type,	1697	Extracellular (Potential).|IV.				energy reserve metabolic process|membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6						CTGCGGCACCGATCTGGCCTA	0.557000												
HMCN1	83872	broad.mit.edu	37	1	186084051	186084051	+	Missense_Mutation	SNP	C	C	T	rs147547755	byFrequency	TCGA-HU-A4G3-01A-11D-A24D-08	TCGA-HU-A4G3-10A-01D-A24F-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d83776d-2358-427a-bc55-0ae429559d41	bbf11eb7-0258-4973-be54-d8dd4e11baf1	g.chr1:186084051C>T	uc001grq.1	+	74	11606	c.11377C>T	c.(11377-11379)CGC>TGC	p.R3793C		NM_031935	NP_114141	Q96RW7	HMCN1_HUMAN	hemicentin 1 precursor	3793	Ig-like C2-type 36.				response to stimulus|visual perception	basement membrane	calcium ion binding			ovary(22)|skin(1)	23						TGGAACAGATCGCAGGCGAAT	0.423000												
OBSCN	84033	broad.mit.edu	37	1	228550296	228550296	+	Silent	SNP	G	G	A			TCGA-HU-A4G3-01A-11D-A24D-08	TCGA-HU-A4G3-10A-01D-A24F-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d83776d-2358-427a-bc55-0ae429559d41	bbf11eb7-0258-4973-be54-d8dd4e11baf1	g.chr1:228550296G>A	uc009xez.1	+	80	18725	c.18681G>A	c.(18679-18681)GCG>GCA	p.A6227A	OBSCN_uc001hsr.1_Silent_p.A856A	NM_001098623	NP_001092093	Q5VST9	OBSCN_HUMAN	obscurin, cytoskeletal calmodulin and	6227					apoptosis|cell differentiation|induction of apoptosis by extracellular signals|multicellular organismal development|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|M band|Z disc	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity|Rho guanyl-nucleotide exchange factor activity|structural constituent of muscle|titin binding			stomach(8)|large_intestine(7)|breast(5)|ovary(4)|skin(2)|central_nervous_system(1)|pancreas(1)	28		Prostate(94;0.0405)				TGGAGCGAGCGGACCAGGAGG	0.682000												
OR2M5	127059	broad.mit.edu	37	1	248308867	248308867	+	Missense_Mutation	SNP	A	A	C			TCGA-HU-A4G3-01A-11D-A24D-08	TCGA-HU-A4G3-10A-01D-A24F-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d83776d-2358-427a-bc55-0ae429559d41	bbf11eb7-0258-4973-be54-d8dd4e11baf1	g.chr1:248308867A>C	uc010pze.1	+	1	418	c.418A>C	c.(418-420)ATT>CTT	p.I140L		NM_001004690	NP_001004690	A3KFT3	OR2M5_HUMAN	olfactory receptor, family 2, subfamily M,	140	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|kidney(1)	3	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0388)			GAGACCCAAAATTTGTGGACT	0.468000												
TET1	80312	broad.mit.edu	37	10	70446268	70446268	+	Silent	SNP	C	C	T			TCGA-HU-A4G3-01A-11D-A24D-08	TCGA-HU-A4G3-10A-01D-A24F-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d83776d-2358-427a-bc55-0ae429559d41	bbf11eb7-0258-4973-be54-d8dd4e11baf1	g.chr10:70446268C>T	uc001jok.3	+	11	5713	c.5208C>T	c.(5206-5208)GTC>GTT	p.V1736V		NM_030625	NP_085128	Q8NFU7	TET1_HUMAN	CXXC finger 6	1736					DNA demethylation|inner cell mass cell differentiation|negative regulation of methylation-dependent chromatin silencing|stem cell maintenance		iron ion binding|methylcytosine dioxygenase activity|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|structure-specific DNA binding|zinc ion binding			ovary(5)|lung(2)|prostate(1)|breast(1)	9						CCATCGAGGTCCTGGCACCCC	0.502000												
GRID1	2894	broad.mit.edu	37	10	87484323	87484323	+	Silent	SNP	G	G	A			TCGA-HU-A4G3-01A-11D-A24D-08	TCGA-HU-A4G3-10A-01D-A24F-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d83776d-2358-427a-bc55-0ae429559d41	bbf11eb7-0258-4973-be54-d8dd4e11baf1	g.chr10:87484323G>A	uc001kdl.1	-	11	1745	c.1644C>T	c.(1642-1644)CCC>CCT	p.P548P	GRID1_uc009xsu.1_RNA|GRID1_uc010qmf.1_Silent_p.P119P	NM_017551	NP_060021	Q9ULK0	GRID1_HUMAN	glutamate receptor, ionotropic, delta 1	548	Extracellular (Potential).					cell junction|integral to membrane|outer membrane-bounded periplasmic space|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|ionotropic glutamate receptor activity			ovary(5)|upper_aerodigestive_tract(2)|large_intestine(2)|central_nervous_system(1)	10					L-Glutamic Acid(DB00142)	TTTTCTCCTCGGGCTTCTTAA	0.512000										Multiple Myeloma(13;0.14)		
SORCS3	22986	broad.mit.edu	37	10	107015496	107015496	+	Missense_Mutation	SNP	T	T	G			TCGA-HU-A4G3-01A-11D-A24D-08	TCGA-HU-A4G3-10A-01D-A24F-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d83776d-2358-427a-bc55-0ae429559d41	bbf11eb7-0258-4973-be54-d8dd4e11baf1	g.chr10:107015496T>G	uc001kyi.1	+	24	3501	c.3274T>G	c.(3274-3276)TTG>GTG	p.L1092V		NM_014978	NP_055793	Q9UPU3	SORC3_HUMAN	VPS10 domain receptor protein SORCS 3 precursor	1092	Lumenal (Potential).					integral to membrane	neuropeptide receptor activity			ovary(6)|skin(3)|central_nervous_system(1)	10		Colorectal(252;0.134)|Breast(234;0.142)|Lung NSC(174;0.191)		Epithelial(162;1.58e-07)|all cancers(201;1.02e-05)|BRCA - Breast invasive adenocarcinoma(275;0.0628)		CAACCAAAATTTGGTCCAGTT	0.463000												
NHLRC2	374354	broad.mit.edu	37	10	115668195	115668195	+	Missense_Mutation	SNP	G	G	T			TCGA-HU-A4G3-01A-11D-A24D-08	TCGA-HU-A4G3-10A-01D-A24F-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d83776d-2358-427a-bc55-0ae429559d41	bbf11eb7-0258-4973-be54-d8dd4e11baf1	g.chr10:115668195G>T	uc001lax.1	+	11	2293	c.2081G>T	c.(2080-2082)AGT>ATT	p.S694I	NHLRC2_uc001lay.1_RNA	NM_198514	NP_940916	Q8NBF2	NHLC2_HUMAN	NHL repeat containing 2	694					cell redox homeostasis					ovary(1)	1				Epithelial(162;0.017)|all cancers(201;0.0187)		GCAGACAGCAGTGCTTGTATG	0.388000												
OR5P2	120065	broad.mit.edu	37	11	7817743	7817743	+	Silent	SNP	C	C	A	rs148357349	byFrequency	TCGA-HU-A4G3-01A-11D-A24D-08	TCGA-HU-A4G3-10A-01D-A24F-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d83776d-2358-427a-bc55-0ae429559d41	bbf11eb7-0258-4973-be54-d8dd4e11baf1	g.chr11:7817743C>A	uc001mfp.1	-	1	747	c.747G>T	c.(745-747)GGG>GGT	p.G249G		NM_153444	NP_703145	Q8WZ92	OR5P2_HUMAN	olfactory receptor, family 5, subfamily P,	249	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(2)|central_nervous_system(1)	5				Epithelial(150;8.62e-08)|BRCA - Breast invasive adenocarcinoma(625;0.189)		AGGTAATGGTCCCATAGAACA	0.493000												
OR10A3	26496	broad.mit.edu	37	11	7960148	7960148	+	Missense_Mutation	SNP	C	C	T			TCGA-HU-A4G3-01A-11D-A24D-08	TCGA-HU-A4G3-10A-01D-A24F-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d83776d-2358-427a-bc55-0ae429559d41	bbf11eb7-0258-4973-be54-d8dd4e11baf1	g.chr11:7960148C>T	uc010rbi.1	-	1	920	c.920G>A	c.(919-921)AGA>AAA	p.R307K		NM_001003745	NP_001003745	P58181	O10A3_HUMAN	olfactory receptor, family 10, subfamily A,	307	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)	1				Epithelial(150;1.38e-07)|BRCA - Breast invasive adenocarcinoma(625;0.189)		AATCACTTTTCTTCGCCATAG	0.388000												
C11orf16	56673	broad.mit.edu	37	11	8951070	8951070	+	Missense_Mutation	SNP	A	A	G			TCGA-HU-A4G3-01A-11D-A24D-08	TCGA-HU-A4G3-10A-01D-A24F-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d83776d-2358-427a-bc55-0ae429559d41	bbf11eb7-0258-4973-be54-d8dd4e11baf1	g.chr11:8951070A>G	uc001mhb.3	-	3	302	c.178T>C	c.(178-180)TCT>CCT	p.S60P	C11orf16_uc001mhc.3_Missense_Mutation_p.S60P	NM_020643	NP_065694	Q9NQ32	CK016_HUMAN	hypothetical protein LOC56673	60										upper_aerodigestive_tract(1)|pancreas(1)	2				Epithelial(150;4.11e-08)|BRCA - Breast invasive adenocarcinoma(625;0.0234)		CATGGGCAAGAAGAGGCATGC	0.527000												
IPO7	10527	broad.mit.edu	37	11	9435873	9435873	+	Missense_Mutation	SNP	G	G	A			TCGA-HU-A4G3-01A-11D-A24D-08	TCGA-HU-A4G3-10A-01D-A24F-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d83776d-2358-427a-bc55-0ae429559d41	bbf11eb7-0258-4973-be54-d8dd4e11baf1	g.chr11:9435873G>A	uc001mho.2	+	5	693	c.551G>A	c.(550-552)CGT>CAT	p.R184H		NM_006391	NP_006382	O95373	IPO7_HUMAN	importin 7	184					interspecies interaction between organisms|signal transduction	Golgi apparatus|nuclear pore|soluble fraction	protein transporter activity|Ran GTPase binding|small GTPase regulator activity			lung(1)|breast(1)	2				all cancers(16;8.29e-09)|Epithelial(150;4.76e-08)|BRCA - Breast invasive adenocarcinoma(625;0.0217)		CTAAAGGATCGTTTTATCCAG	0.403000												
PC	5091	broad.mit.edu	37	11	66617864	66617864	+	Missense_Mutation	SNP	C	C	T			TCGA-HU-A4G3-01A-11D-A24D-08	TCGA-HU-A4G3-10A-01D-A24F-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d83776d-2358-427a-bc55-0ae429559d41	bbf11eb7-0258-4973-be54-d8dd4e11baf1	g.chr11:66617864C>T	uc001ojn.1	-	17	2594	c.2545G>A	c.(2545-2547)GAC>AAC	p.D849N	PC_uc001ojo.1_Missense_Mutation_p.D849N|PC_uc001ojp.1_Missense_Mutation_p.D849N|PC_uc001ojm.1_5'Flank	NM_022172	NP_071504	P11498	PYC_HUMAN	pyruvate carboxylase precursor	849					gluconeogenesis|lipid biosynthetic process	mitochondrial matrix	ATP binding|biotin binding|biotin carboxylase activity|metal ion binding|pyruvate carboxylase activity			ovary(2)|lung(1)|kidney(1)	4		Melanoma(852;0.0525)		Lung(977;0.153)|LUSC - Lung squamous cell carcinoma(976;0.227)	Biotin(DB00121)|Pyruvic acid(DB00119)	GCCGTGCAGTCGAAGGCCGCG	0.617000												
P2RY6	5031	broad.mit.edu	37	11	73008215	73008215	+	Missense_Mutation	SNP	C	C	T	rs141420011		TCGA-HU-A4G3-01A-11D-A24D-08	TCGA-HU-A4G3-10A-01D-A24F-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d83776d-2358-427a-bc55-0ae429559d41	bbf11eb7-0258-4973-be54-d8dd4e11baf1	g.chr11:73008215C>T	uc001otm.2	+	4	1057	c.652C>T	c.(652-654)CGC>TGC	p.R218C	P2RY6_uc001otn.2_Missense_Mutation_p.R218C|P2RY6_uc001oto.2_Missense_Mutation_p.R218C|P2RY6_uc001otp.2_Missense_Mutation_p.R218C|P2RY6_uc001otq.2_Missense_Mutation_p.R218C|P2RY6_uc001otr.2_Missense_Mutation_p.R218C|P2RY6_uc001ots.2_Missense_Mutation_p.R218C	NM_176796	NP_789766	Q15077	P2RY6_HUMAN	pyrimidinergic receptor P2Y6	218	Cytoplasmic (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger	integral to plasma membrane	purinergic nucleotide receptor activity, G-protein coupled			ovary(1)	1						CCTGGCCTGCCGCCTGTGCCG	0.677000												
RSF1	51773	broad.mit.edu	37	11	77411864	77411864	+	Missense_Mutation	SNP	C	C	T			TCGA-HU-A4G3-01A-11D-A24D-08	TCGA-HU-A4G3-10A-01D-A24F-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d83776d-2358-427a-bc55-0ae429559d41	bbf11eb7-0258-4973-be54-d8dd4e11baf1	g.chr11:77411864C>T	uc001oyn.2	-	6	2530	c.2410G>A	c.(2410-2412)GAA>AAA	p.E804K	RSF1_uc001oym.2_Missense_Mutation_p.E552K	NM_016578	NP_057662	Q96T23	RSF1_HUMAN	remodeling and spacing factor 1	804					CenH3-containing nucleosome assembly at centromere|negative regulation of DNA binding|negative regulation of transcription, DNA-dependent|nucleosome positioning|positive regulation of transcription, DNA-dependent|positive regulation of viral transcription|transcription initiation, DNA-dependent	RSF complex	histone binding|protein binding|zinc ion binding			ovary(2)|central_nervous_system(2)	4	all_cancers(14;1.54e-17)|all_epithelial(13;4.06e-20)|Ovarian(111;0.152)		Epithelial(5;3e-50)|all cancers(3;6.37e-47)|BRCA - Breast invasive adenocarcinoma(5;9.82e-31)			ACCTCATCTTCTCCTTCCCCT	0.373000												
FAT3	120114	broad.mit.edu	37	11	92616096	92616096	+	Silent	SNP	C	C	T			TCGA-HU-A4G3-01A-11D-A24D-08	TCGA-HU-A4G3-10A-01D-A24F-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d83776d-2358-427a-bc55-0ae429559d41	bbf11eb7-0258-4973-be54-d8dd4e11baf1	g.chr11:92616096C>T	uc001pdj.3	+	23	12491	c.12474C>T	c.(12472-12474)ATC>ATT	p.I4158I	FAT3_uc001pdi.3_Silent_p.I598I	NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	4158	Helical; (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				TCATCGGCATCGCCGTGGTCC	0.597000										TCGA Ovarian(4;0.039)		
CNTN5	53942	broad.mit.edu	37	11	99932018	99932018	+	Missense_Mutation	SNP	C	C	T			TCGA-HU-A4G3-01A-11D-A24D-08	TCGA-HU-A4G3-10A-01D-A24F-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d83776d-2358-427a-bc55-0ae429559d41	bbf11eb7-0258-4973-be54-d8dd4e11baf1	g.chr11:99932018C>T	uc001pga.2	+	10	1394	c.1055C>T	c.(1054-1056)GCG>GTG	p.A352V	CNTN5_uc009ywv.1_Missense_Mutation_p.A352V|CNTN5_uc001pfz.2_Missense_Mutation_p.A352V|CNTN5_uc001pgb.2_Missense_Mutation_p.A278V	NM_014361	NP_055176	O94779	CNTN5_HUMAN	contactin 5 isoform long	352	Ig-like C2-type 3.				cell adhesion	anchored to membrane|plasma membrane	protein binding			skin(3)|ovary(2)|pancreas(2)|breast(1)	8		all_hematologic(158;1.22e-05)|Acute lymphoblastic leukemia(157;3.81e-05)|Melanoma(852;0.219)		BRCA - Breast invasive adenocarcinoma(274;0.00146)|KIRC - Kidney renal clear cell carcinoma(183;0.156)|Kidney(183;0.196)		AAATCTCAGGCGGTGCTGGAA	0.433000												
DDI1	414301	broad.mit.edu	37	11	103907764	103907764	+	Missense_Mutation	SNP	G	G	A			TCGA-HU-A4G3-01A-11D-A24D-08	TCGA-HU-A4G3-10A-01D-A24F-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d83776d-2358-427a-bc55-0ae429559d41	bbf11eb7-0258-4973-be54-d8dd4e11baf1	g.chr11:103907764G>A	uc001phr.2	+	1	457	c.214G>A	c.(214-216)GTG>ATG	p.V72M	PDGFD_uc001php.2_Intron|PDGFD_uc001phq.2_Intron	NM_001001711	NP_001001711	Q8WTU0	DDI1_HUMAN	DDI1, DNA-damage inducible 1, homolog 1	72	Ubiquitin-like.				proteolysis		aspartic-type endopeptidase activity			large_intestine(3)|upper_aerodigestive_tract(1)|pancreas(1)	5		Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.00648)|Melanoma(852;0.055)|all_neural(303;0.164)		BRCA - Breast invasive adenocarcinoma(274;0.00128)|Epithelial(105;0.0631)|all cancers(92;0.169)		TGGCGATATCGTGGTTTTACT	0.592000												
GRIN2B	2904	broad.mit.edu	37	12	13717533	13717533	+	Missense_Mutation	SNP	C	C	T			TCGA-HU-A4G3-01A-11D-A24D-08	TCGA-HU-A4G3-10A-01D-A24F-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d83776d-2358-427a-bc55-0ae429559d41	bbf11eb7-0258-4973-be54-d8dd4e11baf1	g.chr12:13717533C>T	uc001rbt.2	-	13	2818	c.2639G>A	c.(2638-2640)CGC>CAC	p.R880H		NM_000834	NP_000825	Q13224	NMDE2_HUMAN	N-methyl-D-aspartate receptor subunit 2B	880	Cytoplasmic (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	glycine binding|N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			central_nervous_system(4)|ovary(3)|skin(3)|lung(2)	12					Felbamate(DB00949)|Haloperidol(DB00502)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	TACAGACTGGCGCTCCTCGAT	0.537000												
MLXIP	22877	broad.mit.edu	37	12	122617978	122617978	+	Silent	SNP	T	T	G			TCGA-HU-A4G3-01A-11D-A24D-08	TCGA-HU-A4G3-10A-01D-A24F-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d83776d-2358-427a-bc55-0ae429559d41	bbf11eb7-0258-4973-be54-d8dd4e11baf1	g.chr12:122617978T>G	uc001ubq.2	+	9	1176	c.1176T>G	c.(1174-1176)GCT>GCG	p.A392A	MLXIP_uc001ubr.2_Silent_p.A143A|MLXIP_uc001ubs.1_5'UTR|MLXIP_uc001ubt.2_5'UTR	NM_014938	NP_055753	Q9HAP2	MLXIP_HUMAN	MLX interacting protein	392	Transactivation domain.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	mitochondrial outer membrane|nucleus	DNA binding			ovary(2)	2	all_neural(191;0.0837)|Medulloblastoma(191;0.163)	Lung NSC(355;0.0659)		OV - Ovarian serous cystadenocarcinoma(86;0.000599)|Epithelial(86;0.00102)|BRCA - Breast invasive adenocarcinoma(302;0.233)		CATCCCTGGCTCACATGGATG	0.627000												
VPS37B	79720	broad.mit.edu	37	12	123380549	123380549	+	Silent	SNP	G	G	A			TCGA-HU-A4G3-01A-11D-A24D-08	TCGA-HU-A4G3-10A-01D-A24F-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d83776d-2358-427a-bc55-0ae429559d41	bbf11eb7-0258-4973-be54-d8dd4e11baf1	g.chr12:123380549G>A	uc001udl.2	-	1	164	c.61C>T	c.(61-63)CTG>TTG	p.L21L		NM_024667	NP_078943	Q9H9H4	VP37B_HUMAN	vacuolar protein sorting 37B	21					cellular membrane organization|endosome transport|protein transport	late endosome membrane					0	all_neural(191;0.0837)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;5.08e-05)|Epithelial(86;0.000197)|BRCA - Breast invasive adenocarcinoma(302;0.205)		TCCTCCAGCAGCTCGTTGAGC	0.711000												
GALNT9	50614	broad.mit.edu	37	12	132682498	132682498	+	Missense_Mutation	SNP	G	G	A			TCGA-HU-A4G3-01A-11D-A24D-08	TCGA-HU-A4G3-10A-01D-A24F-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d83776d-2358-427a-bc55-0ae429559d41	bbf11eb7-0258-4973-be54-d8dd4e11baf1	g.chr12:132682498G>A	uc001ukc.3	-	10	1620	c.1504C>T	c.(1504-1506)CGG>TGG	p.R502W	GALNT9_uc009zyr.2_Missense_Mutation_p.R276W|GALNT9_uc001ukb.2_Missense_Mutation_p.R359W|GALNT9_uc001uka.2_Missense_Mutation_p.R136W	NM_001122636	NP_001116108	Q9HCQ5	GALT9_HUMAN	UDP-N-acetyl-alpha-D-galactosamine:polypeptide	502	Ricin B-type lectin.|Lumenal (Potential).				protein O-linked glycosylation	Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding				0	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_epithelial(31;0.241)		OV - Ovarian serous cystadenocarcinoma(86;7.49e-08)|Epithelial(86;3.55e-07)|all cancers(50;2.09e-05)		GCGCTGTACCGCACCAGCTGG	0.657000												
WBP4	11193	broad.mit.edu	37	13	41642805	41642805	+	Missense_Mutation	SNP	C	C	T			TCGA-HU-A4G3-01A-11D-A24D-08	TCGA-HU-A4G3-10A-01D-A24F-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d83776d-2358-427a-bc55-0ae429559d41	bbf11eb7-0258-4973-be54-d8dd4e11baf1	g.chr13:41642805C>T	uc001uxt.2	+	5	484	c.371C>T	c.(370-372)TCA>TTA	p.S124L	WBP4_uc010tfd.1_Missense_Mutation_p.S103L	NM_007187	NP_009118	O75554	WBP4_HUMAN	WW domain-containing binding protein 4	124	WW 1.|Lys-rich.				nuclear mRNA cis splicing, via spliceosome	nuclear speck|spliceosomal complex	nucleic acid binding|proline-rich region binding|zinc ion binding			breast(2)|kidney(1)	3		Lung NSC(96;3.55e-06)|Breast(139;0.00123)|Prostate(109;0.0181)|Lung SC(185;0.0262)|Hepatocellular(98;0.114)		all cancers(112;3.11e-09)|Epithelial(112;3.37e-06)|OV - Ovarian serous cystadenocarcinoma(117;8.3e-05)|GBM - Glioblastoma multiforme(144;0.00102)|BRCA - Breast invasive adenocarcinoma(63;0.07)		aaagaTCCTTCAAAGGGCAGA	0.348000												
DIAPH3	81624	broad.mit.edu	37	13	60407354	60407354	+	Missense_Mutation	SNP	C	C	T			TCGA-HU-A4G3-01A-11D-A24D-08	TCGA-HU-A4G3-10A-01D-A24F-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d83776d-2358-427a-bc55-0ae429559d41	bbf11eb7-0258-4973-be54-d8dd4e11baf1	g.chr13:60407354C>T	uc001vht.2	-	24	3133	c.2914G>A	c.(2914-2916)GAA>AAA	p.E972K	DIAPH3_uc001vhu.2_Missense_Mutation_p.E709K	NM_001042517	NP_001035982	Q9NSV4	DIAP3_HUMAN	diaphanous homolog 3 isoform a	972	FH2.				actin cytoskeleton organization		actin binding|Rho GTPase binding			ovary(2)	2		Breast(118;0.052)|Prostate(109;0.103)|Hepatocellular(98;0.132)		GBM - Glioblastoma multiforme(99;2.77e-05)		TCCATGTTTTCGTGTAACTTC	0.343000												
GRK1	6011	broad.mit.edu	37	13	114325921	114325921	+	Missense_Mutation	SNP	G	G	A			TCGA-HU-A4G3-01A-11D-A24D-08	TCGA-HU-A4G3-10A-01D-A24F-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d83776d-2358-427a-bc55-0ae429559d41	bbf11eb7-0258-4973-be54-d8dd4e11baf1	g.chr13:114325921G>A	uc010tkf.1	+	3	1043	c.935G>A	c.(934-936)CGG>CAG	p.R312Q		NM_002929	NP_002920	Q15835	RK_HUMAN	rhodopsin kinase precursor	312	Protein kinase.				regulation of G-protein coupled receptor protein signaling pathway|rhodopsin mediated phototransduction|rhodopsin mediated signaling pathway	membrane	ATP binding|G-protein coupled receptor kinase activity|rhodopsin kinase activity|signal transducer activity			ovary(2)	2	Lung NSC(43;0.0113)|all_neural(89;0.0337)|Hepatocellular(20;0.0877)|Medulloblastoma(90;0.163)|Lung SC(71;0.218)	all_cancers(25;0.00696)|all_epithelial(44;0.00347)|all_lung(25;0.0221)|Breast(118;0.0411)|Lung NSC(25;0.0839)	all cancers(43;0.234)			CACCAGAGGCGGATCGTCTAC	0.547000												
FITM1	161247	broad.mit.edu	37	14	24601501	24601501	+	Silent	SNP	G	G	A			TCGA-HU-A4G3-01A-11D-A24D-08	TCGA-HU-A4G3-10A-01D-A24F-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d83776d-2358-427a-bc55-0ae429559d41	bbf11eb7-0258-4973-be54-d8dd4e11baf1	g.chr14:24601501G>A	uc001wmf.2	+	2	446	c.348G>A	c.(346-348)CGG>CGA	p.R116R		NM_203402	NP_981947	A5D6W6	FITM1_HUMAN	fat-inducing transcript 1	116	Extracellular (Potential).				lipid particle organization|positive regulation of sequestering of triglyceride	endoplasmic reticulum membrane|integral to membrane					0						TGGCTACACGGCGCGTGGCAG	0.602000												
MTMR15	22909	broad.mit.edu	37	15	31218089	31218089	+	Missense_Mutation	SNP	G	G	A			TCGA-HU-A4G3-01A-11D-A24D-08	TCGA-HU-A4G3-10A-01D-A24F-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d83776d-2358-427a-bc55-0ae429559d41	bbf11eb7-0258-4973-be54-d8dd4e11baf1	g.chr15:31218089G>A	uc001zff.2	+	10	2726	c.2435G>A	c.(2434-2436)TGC>TAC	p.C812Y	MTMR15_uc001zfe.2_Missense_Mutation_p.C417Y	NM_014967	NP_055782	Q9Y2M0	FAN1_HUMAN	myotubularin related protein 15 isoform a	812					double-strand break repair via homologous recombination|nucleotide-excision repair, DNA incision	nucleus	5'-3' exonuclease activity|5'-flap endonuclease activity|DNA binding|magnesium ion binding|phosphodiesterase I activity|ubiquitin binding				0		all_lung(180;2.23e-09)		all cancers(64;4.72e-15)|Epithelial(43;5.4e-11)|GBM - Glioblastoma multiforme(186;0.000136)|BRCA - Breast invasive adenocarcinoma(123;0.00402)|Lung(196;0.168)		ACGGTCCTGTGCTCTGTGGAG	0.627000								Direct_reversal_of_damage|Editing_and_processing_nucleases				
CAPN3	825	broad.mit.edu	37	15	42695123	42695123	+	Silent	SNP	C	C	T			TCGA-HU-A4G3-01A-11D-A24D-08	TCGA-HU-A4G3-10A-01D-A24F-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d83776d-2358-427a-bc55-0ae429559d41	bbf11eb7-0258-4973-be54-d8dd4e11baf1	g.chr15:42695123C>T	uc001zpn.1	+	13	1974	c.1668C>T	c.(1666-1668)ATC>ATT	p.I556I	CAPN3_uc001zpk.1_Silent_p.I329I|CAPN3_uc001zpl.1_Silent_p.I469I|CAPN3_uc010udf.1_Silent_p.I469I|CAPN3_uc010udg.1_Silent_p.I421I|CAPN3_uc001zpo.1_Silent_p.I556I|CAPN3_uc001zpp.1_Silent_p.I508I|CAPN3_uc001zpq.1_Silent_p.I44I|CAPN3_uc010bcv.1_5'Flank|CAPN3_uc001zpr.1_5'Flank|CAPN3_uc001zps.1_5'Flank|CAPN3_uc001zpt.1_5'Flank	NM_000070	NP_000061	P20807	CAN3_HUMAN	calpain 3 isoform a	556	Domain III.				muscle organ development|proteolysis	cytoplasm	calcium ion binding|calcium-dependent cysteine-type endopeptidase activity|signal transducer activity			central_nervous_system(1)	1		all_cancers(109;1.65e-16)|all_epithelial(112;8.34e-15)|Lung NSC(122;3.56e-09)|all_lung(180;1.68e-08)|Melanoma(134;0.0574)|Colorectal(260;0.152)		GBM - Glioblastoma multiforme(94;7.36e-07)		AGTACGTCATCGTGCCCTCCA	0.592000												
LCMT2	9836	broad.mit.edu	37	15	43621183	43621183	+	Missense_Mutation	SNP	C	C	A			TCGA-HU-A4G3-01A-11D-A24D-08	TCGA-HU-A4G3-10A-01D-A24F-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d83776d-2358-427a-bc55-0ae429559d41	bbf11eb7-0258-4973-be54-d8dd4e11baf1	g.chr15:43621183C>A	uc001zrg.2	-	1	1709	c.1505G>T	c.(1504-1506)AGC>ATC	p.S502I	LCMT2_uc010udn.1_Missense_Mutation_p.S81I|ADAL_uc001zrh.2_5'Flank|ADAL_uc010udo.1_5'Flank	NM_014793	NP_055608	O60294	LCMT2_HUMAN	leucine carboxyl methyltransferase 2	502					tRNA processing		methyltransferase activity|protein binding				0		all_cancers(109;2.12e-14)|all_epithelial(112;1.99e-12)|Lung NSC(122;2.46e-08)|all_lung(180;2.75e-07)|Melanoma(134;0.0476)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;8.1e-07)	L-Leucine(DB00149)	TTCCACCACGCTTCGACCCCC	0.507000												
B2M	567	broad.mit.edu	37	15	45007694	45007694	+	Silent	SNP	G	G	A			TCGA-HU-A4G3-01A-11D-A24D-08	TCGA-HU-A4G3-10A-01D-A24F-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d83776d-2358-427a-bc55-0ae429559d41	bbf11eb7-0258-4973-be54-d8dd4e11baf1	g.chr15:45007694G>A	uc001zuc.2	+	2	201	c.141G>A	c.(139-141)GTG>GTA	p.V47V	B2M_uc010uek.1_Silent_p.V47V|B2M_uc010bdx.1_Silent_p.V47V	NM_004048	NP_004039	P61769	B2MG_HUMAN	beta-2-microglobulin precursor	47	Ig-like C1-type.				antigen processing and presentation of peptide antigen via MHC class I|interferon-gamma-mediated signaling pathway|regulation of defense response to virus by virus|viral reproduction	early endosome membrane|Golgi membrane|MHC class I protein complex	protein binding			ovary(2)|skin(1)	3		all_cancers(109;1.88e-13)|all_epithelial(112;2.13e-11)|Lung NSC(122;2.22e-07)|all_lung(180;1.81e-06)|Melanoma(134;0.0122)		all cancers(107;4.16e-21)|GBM - Glioblastoma multiforme(94;8.97e-07)|COAD - Colon adenocarcinoma(120;0.0357)|Colorectal(105;0.0377)|Lung(196;0.0903)|LUSC - Lung squamous cell carcinoma(244;0.192)		ATTGCTATGTGTCTGGGTTTC	0.413000												
LRRK1	79705	broad.mit.edu	37	15	101588825	101588825	+	Missense_Mutation	SNP	G	G	A			TCGA-HU-A4G3-01A-11D-A24D-08	TCGA-HU-A4G3-10A-01D-A24F-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d83776d-2358-427a-bc55-0ae429559d41	bbf11eb7-0258-4973-be54-d8dd4e11baf1	g.chr15:101588825G>A	uc002bwr.2	+	22	3581	c.3262G>A	c.(3262-3264)GAA>AAA	p.E1088K	LRRK1_uc010usb.1_RNA|LRRK1_uc010usc.1_Intron	NM_024652	NP_078928	Q38SD2	LRRK1_HUMAN	leucine-rich repeat kinase 1	1088					small GTPase mediated signal transduction	mitochondrion	ATP binding|GTP binding|metal ion binding|protein binding|protein serine/threonine kinase activity			ovary(4)|lung(4)|central_nervous_system(3)|large_intestine(1)	12	Melanoma(26;0.00505)|Lung NSC(78;0.00793)|all_lung(78;0.0094)		OV - Ovarian serous cystadenocarcinoma(32;0.000932)|LUSC - Lung squamous cell carcinoma(107;0.187)|Lung(145;0.23)			CTATTGGCAGGAAGGGCTCCT	0.527000												
SALL1	6299	broad.mit.edu	37	16	51171162	51171162	+	Missense_Mutation	SNP	G	G	A			TCGA-HU-A4G3-01A-11D-A24D-08	TCGA-HU-A4G3-10A-01D-A24F-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d83776d-2358-427a-bc55-0ae429559d41	bbf11eb7-0258-4973-be54-d8dd4e11baf1	g.chr16:51171162G>A	uc010vgs.1	-	3	3867	c.3836C>T	c.(3835-3837)ACG>ATG	p.T1279M	SALL1_uc010vgr.1_Missense_Mutation_p.T1182M|SALL1_uc010cbv.2_Missense_Mutation_p.T131M	NM_002968	NP_002959	Q9NSC2	SALL1_HUMAN	sal-like 1 isoform a	1279					adrenal gland development|branching involved in ureteric bud morphogenesis|embryonic digestive tract development|embryonic digit morphogenesis|gonad development|histone deacetylation|inductive cell-cell signaling|mesenchymal to epithelial transition involved in metanephros morphogenesis|negative regulation of transcription from RNA polymerase II promoter|olfactory bulb interneuron differentiation|olfactory bulb mitral cell layer development|olfactory nerve development|outer ear morphogenesis|pituitary gland development|positive regulation of transcription from RNA polymerase II promoter|positive regulation of Wnt receptor signaling pathway|ureteric bud invasion|ventricular septum development	chromocenter|cytoplasm|heterochromatin|nucleus	beta-catenin binding|DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(5)|ovary(3)	8		all_cancers(37;0.0322)	COAD - Colon adenocarcinoma(2;0.24)			CAGGTTTCCCGTCAGCCCACT	0.582000												
LPCAT2	54947	broad.mit.edu	37	16	55616898	55616898	+	Missense_Mutation	SNP	C	C	T			TCGA-HU-A4G3-01A-11D-A24D-08	TCGA-HU-A4G3-10A-01D-A24F-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d83776d-2358-427a-bc55-0ae429559d41	bbf11eb7-0258-4973-be54-d8dd4e11baf1	g.chr16:55616898C>T	uc002eie.3	+	14	1704	c.1523C>T	c.(1522-1524)ACG>ATG	p.T508M	LPCAT2_uc002eic.2_Missense_Mutation_p.T238M	NM_017839	NP_060309	Q7L5N7	PCAT2_HUMAN	lysophosphatidylcholine acyltransferase 2	508	Lumenal (Potential).				cellular membrane organization|platelet activating factor biosynthetic process	endoplasmic reticulum membrane|Golgi membrane|Golgi stack|integral to membrane	1-acylglycerophosphocholine O-acyltransferase activity|1-alkylglycerophosphocholine O-acetyltransferase activity|calcium ion binding				0						GACCTCCAGACGTGCCATGTG	0.388000												
CCDC135	84229	broad.mit.edu	37	16	57760055	57760055	+	Missense_Mutation	SNP	G	G	A			TCGA-HU-A4G3-01A-11D-A24D-08	TCGA-HU-A4G3-10A-01D-A24F-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d83776d-2358-427a-bc55-0ae429559d41	bbf11eb7-0258-4973-be54-d8dd4e11baf1	g.chr16:57760055G>A	uc002emi.2	+	13	1923	c.1834G>A	c.(1834-1836)GCG>ACG	p.A612T	CCDC135_uc002emj.2_Missense_Mutation_p.A612T|CCDC135_uc002emk.2_Missense_Mutation_p.A547T	NM_032269	NP_115645	Q8IY82	CC135_HUMAN	coiled-coil domain containing 135	612						cytoplasm				central_nervous_system(1)	1						GTTTCTGGTCGCGGAGGAGCG	0.632000												
LRRC36	55282	broad.mit.edu	37	16	67401083	67401083	+	Silent	SNP	A	A	G			TCGA-HU-A4G3-01A-11D-A24D-08	TCGA-HU-A4G3-10A-01D-A24F-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d83776d-2358-427a-bc55-0ae429559d41	bbf11eb7-0258-4973-be54-d8dd4e11baf1	g.chr16:67401083A>G	uc002esv.2	+	8	937	c.918A>G	c.(916-918)TCA>TCG	p.S306S	LRRC36_uc002esw.2_Intron|LRRC36_uc010ceh.2_Intron|LRRC36_uc002esx.2_Silent_p.S185S|LRRC36_uc010vjk.1_Silent_p.S185S|LRRC36_uc010vjl.1_Intron|LRRC36_uc002esy.2_Intron	NM_018296	NP_060766	Q1X8D7	LRC36_HUMAN	leucine rich repeat containing 36 isoform 1	306											0		Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.0669)|Epithelial(162;0.161)		ATGATGCCTCATTGAGTAAAT	0.388000												
DPEP3	64180	broad.mit.edu	37	16	68012304	68012304	+	Missense_Mutation	SNP	G	G	T			TCGA-HU-A4G3-01A-11D-A24D-08	TCGA-HU-A4G3-10A-01D-A24F-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d83776d-2358-427a-bc55-0ae429559d41	bbf11eb7-0258-4973-be54-d8dd4e11baf1	g.chr16:68012304G>T	uc002evc.3	-	4	721	c.627C>A	c.(625-627)AAC>AAA	p.N209K	DPEP3_uc010cex.2_Missense_Mutation_p.N209K	NM_022357	NP_071752	Q9H4B8	DPEP3_HUMAN	dipeptidase 3 isoform a	184					meiosis	anchored to membrane	dipeptidase activity|dipeptidyl-peptidase activity|metal ion binding|metalloexopeptidase activity			breast(3)	3		Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.0117)|Epithelial(162;0.0481)|all cancers(182;0.236)		TTTGAGAGCTGTTCAGACCTA	0.557000												
CHST5	23563	broad.mit.edu	37	16	75563320	75563320	+	Silent	SNP	G	G	A	rs79685933		TCGA-HU-A4G3-01A-11D-A24D-08	TCGA-HU-A4G3-10A-01D-A24F-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d83776d-2358-427a-bc55-0ae429559d41	bbf11eb7-0258-4973-be54-d8dd4e11baf1	g.chr16:75563320G>A	uc002fei.2	-	3	2358	c.963C>T	c.(961-963)CTC>CTT	p.L321L	CHST5_uc002fej.1_Silent_p.L327L	NM_024533	NP_078809	Q9GZS9	CHST5_HUMAN	carbohydrate (N-acetylglucosamine 6-O)	321	Lumenal (Potential).				N-acetylglucosamine metabolic process|protein sulfation	integral to membrane|intrinsic to Golgi membrane	N-acetylglucosamine 6-O-sulfotransferase activity				0						TCCAGGCCTCGAGCTGTGGCG	0.662000												
VAT1L	57687	broad.mit.edu	37	16	78005791	78005791	+	Silent	SNP	C	C	T			TCGA-HU-A4G3-01A-11D-A24D-08	TCGA-HU-A4G3-10A-01D-A24F-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d83776d-2358-427a-bc55-0ae429559d41	bbf11eb7-0258-4973-be54-d8dd4e11baf1	g.chr16:78005791C>T	uc002ffg.1	+	8	1219	c.1122C>T	c.(1120-1122)GGC>GGT	p.G374G		NM_020927	NP_065978	Q9HCJ6	VAT1L_HUMAN	vesicle amine transport protein 1 homolog (T.	374							oxidoreductase activity|zinc ion binding			central_nervous_system(1)	1						GGAACATTGGCAAGTTAATTC	0.522000											OREG0023950	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)
TAF1C	9013	broad.mit.edu	37	16	84217037	84217037	+	Silent	SNP	G	G	A			TCGA-HU-A4G3-01A-11D-A24D-08	TCGA-HU-A4G3-10A-01D-A24F-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d83776d-2358-427a-bc55-0ae429559d41	bbf11eb7-0258-4973-be54-d8dd4e11baf1	g.chr16:84217037G>A	uc002fhn.2	-	4	525	c.297C>T	c.(295-297)GTC>GTT	p.V99V	TAF1C_uc002fhm.2_Silent_p.V32V|TAF1C_uc010vnx.1_Silent_p.V99V|TAF1C_uc010vny.1_5'UTR|TAF1C_uc010vnz.1_5'UTR|TAF1C_uc002fho.2_5'UTR|TAF1C_uc010voa.1_Intron|TAF1C_uc002fhp.1_RNA|TAF1C_uc010vob.1_Silent_p.V99V	NM_005679	NP_005670	Q15572	TAF1C_HUMAN	TBP-associated factor 1C isoform 1	99					regulation of transcription, DNA-dependent|termination of RNA polymerase I transcription|transcription elongation from RNA polymerase I promoter|transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase I promoter	nucleoplasm	DNA binding			ovary(1)	1						CATCCAGCACGACTCGGGGCC	0.642000												
ANKRD11	29123	broad.mit.edu	37	16	89349170	89349170	+	Silent	SNP	C	C	T	rs139288405	byFrequency	TCGA-HU-A4G3-01A-11D-A24D-08	TCGA-HU-A4G3-10A-01D-A24F-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d83776d-2358-427a-bc55-0ae429559d41	bbf11eb7-0258-4973-be54-d8dd4e11baf1	g.chr16:89349170C>T	uc002fmx.1	-	9	4241	c.3780G>A	c.(3778-3780)TCG>TCA	p.S1260S	ANKRD11_uc002fmy.1_Silent_p.S1260S|ANKRD11_uc002fnc.1_Silent_p.S1260S|ANKRD11_uc002fnb.1_Silent_p.S1217S	NM_013275	NP_037407	Q6UB99	ANR11_HUMAN	ankyrin repeat domain 11	1260	Lys-rich.					nucleus				ovary(4)|large_intestine(1)|central_nervous_system(1)	6		all_hematologic(23;0.00824)|Colorectal(91;0.0475)		Epithelial(1;5.33e-11)|all cancers(4;2.6e-09)|OV - Ovarian serous cystadenocarcinoma(4;2.29e-07)|BRCA - Breast invasive adenocarcinoma(80;0.0142)		GTTCTTTGTCCGACTTCTCTT	0.473000												
TEKT1	83659	broad.mit.edu	37	17	6704226	6704227	+	Missense_Mutation	DNP	TA	TA	AT			TCGA-HU-A4G3-01A-11D-A24D-08	TCGA-HU-A4G3-10A-01D-A24F-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d83776d-2358-427a-bc55-0ae429559d41	bbf11eb7-0258-4973-be54-d8dd4e11baf1	g.chr17:6704226_6704227TA>AT	uc002gdt.2	-	7	998_999	c.888_889TA>AT	c.(886-891)ATTACA>ATATCA	p.T297S	TEKT1_uc010vth.1_Missense_Mutation_p.T151S	NM_053285	NP_444515	Q969V4	TEKT1_HUMAN	tektin 1	297	Potential.				microtubule cytoskeleton organization	cilium axoneme|flagellar axoneme|microtubule				ovary(1)|skin(1)	2		Myeloproliferative disorder(207;0.0255)				TCAAGAGCTGTAATATTTTTCT	0.515000												
CHRNB1	1140	broad.mit.edu	37	17	7357777	7357777	+	Missense_Mutation	SNP	G	G	A			TCGA-HU-A4G3-01A-11D-A24D-08	TCGA-HU-A4G3-10A-01D-A24F-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d83776d-2358-427a-bc55-0ae429559d41	bbf11eb7-0258-4973-be54-d8dd4e11baf1	g.chr17:7357777G>A	uc002ghb.2	+	8	1023	c.982G>A	c.(982-984)GTG>ATG	p.V328M	CHRNB1_uc010vty.1_Missense_Mutation_p.V256M|CHRNB1_uc010vtz.1_Missense_Mutation_p.V162M	NM_000747	NP_000738	P11230	ACHB_HUMAN	nicotinic acetylcholine receptor beta 1 subunit	328	Helical; (Potential).				behavioral response to nicotine|muscle contraction|muscle fiber development|neuromuscular synaptic transmission|postsynaptic membrane organization|regulation of membrane potential|synaptic transmission, cholinergic	cell junction|nicotinic acetylcholine-gated receptor-channel complex|postsynaptic membrane	acetylcholine binding|receptor activity			ovary(2)	2		Prostate(122;0.157)				CCTTAGTGTCGTGGTTCTCAA	0.498000												
KRT32	3882	broad.mit.edu	37	17	39619277	39619277	+	Missense_Mutation	SNP	G	G	A			TCGA-HU-A4G3-01A-11D-A24D-08	TCGA-HU-A4G3-10A-01D-A24F-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d83776d-2358-427a-bc55-0ae429559d41	bbf11eb7-0258-4973-be54-d8dd4e11baf1	g.chr17:39619277G>A	uc002hwr.2	-	6	1083	c.1022C>T	c.(1021-1023)ACG>ATG	p.T341M		NM_002278	NP_002269	Q14532	K1H2_HUMAN	keratin 32	341	Coil 2.|Rod.				epidermis development	intermediate filament	protein binding|structural molecule activity				0		Breast(137;0.000812)				CTCACTCTCCGTCAGCGTGTT	0.572000												
KPNB1	3837	broad.mit.edu	37	17	45757451	45757451	+	Missense_Mutation	SNP	G	G	A			TCGA-HU-A4G3-01A-11D-A24D-08	TCGA-HU-A4G3-10A-01D-A24F-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d83776d-2358-427a-bc55-0ae429559d41	bbf11eb7-0258-4973-be54-d8dd4e11baf1	g.chr17:45757451G>A	uc002ilt.1	+	20	2755	c.2419G>A	c.(2419-2421)GAT>AAT	p.D807N	KPNB1_uc010wkw.1_Missense_Mutation_p.D662N|KPNB1_uc010wkx.1_Missense_Mutation_p.D591N	NM_002265	NP_002256	Q14974	IMB1_HUMAN	karyopherin beta 1	807					DNA fragmentation involved in apoptotic nuclear change|NLS-bearing substrate import into nucleus|protein import into nucleus, translocation|ribosomal protein import into nucleus|viral genome transport in host cell|viral infectious cycle	cytosol|nuclear pore|nucleoplasm	nuclear localization sequence binding|protein domain specific binding|zinc ion binding			ovary(1)|pancreas(1)|skin(1)	3						CATTGCTGGAGATGAGGATCA	0.388000												
ABCC3	8714	broad.mit.edu	37	17	48735443	48735443	+	Missense_Mutation	SNP	G	G	A			TCGA-HU-A4G3-01A-11D-A24D-08	TCGA-HU-A4G3-10A-01D-A24F-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d83776d-2358-427a-bc55-0ae429559d41	bbf11eb7-0258-4973-be54-d8dd4e11baf1	g.chr17:48735443G>A	uc002isl.2	+	5	567	c.487G>A	c.(487-489)GGT>AGT	p.G163S	ABCC3_uc002isk.3_Missense_Mutation_p.G163S	NM_003786	NP_003777	O15438	MRP3_HUMAN	ATP-binding cassette, sub-family C, member 3	163	Extracellular (By similarity).				bile acid metabolic process	integral to plasma membrane|membrane fraction	ATP binding|bile acid-exporting ATPase activity|organic anion transmembrane transporter activity			skin(3)|central_nervous_system(1)	4			BRCA - Breast invasive adenocarcinoma(22;3.05e-09)		Glibenclamide(DB01016)	TCCCACCCAGGGTGAGATCTC	0.607000												
CDH2	1000	broad.mit.edu	37	18	25727654	25727654	+	Missense_Mutation	SNP	C	C	T			TCGA-HU-A4G3-01A-11D-A24D-08	TCGA-HU-A4G3-10A-01D-A24F-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d83776d-2358-427a-bc55-0ae429559d41	bbf11eb7-0258-4973-be54-d8dd4e11baf1	g.chr18:25727654C>T	uc002kwg.2	-	2	614	c.155G>A	c.(154-156)GGA>GAA	p.G52E		NM_001792	NP_001783	P19022	CADH2_HUMAN	cadherin 2, type 1 preproprotein	52					adherens junction organization|cell junction assembly|positive regulation of muscle cell differentiation	catenin complex|integral to membrane	alpha-catenin binding|beta-catenin binding|calcium ion binding|gamma-catenin binding			ovary(3)|lung(1)	4						AAGAGGCTGTCCTTCATGCAC	0.398000												
SERPINB3	6317	broad.mit.edu	37	18	61322928	61322928	+	Missense_Mutation	SNP	T	T	G			TCGA-HU-A4G3-01A-11D-A24D-08	TCGA-HU-A4G3-10A-01D-A24F-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d83776d-2358-427a-bc55-0ae429559d41	bbf11eb7-0258-4973-be54-d8dd4e11baf1	g.chr18:61322928T>G	uc002lji.2	-	8	1280	c.1136A>C	c.(1135-1137)AAC>ACC	p.N379T	SERPINB4_uc002ljg.2_Intron|SERPINB3_uc010dqa.2_Missense_Mutation_p.N327T	NM_006919	NP_008850	P29508	SPB3_HUMAN	serine (or cysteine) proteinase inhibitor, clade	379					regulation of proteolysis	cytoplasm|extracellular region	protein binding|serine-type endopeptidase inhibitor activity			ovary(1)|central_nervous_system(1)|skin(1)	3						GAGGATGCTGTTGGTCTTATT	0.418000												
PGLYRP2	114770	broad.mit.edu	37	19	15582775	15582775	+	Silent	SNP	C	C	T			TCGA-HU-A4G3-01A-11D-A24D-08	TCGA-HU-A4G3-10A-01D-A24F-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d83776d-2358-427a-bc55-0ae429559d41	bbf11eb7-0258-4973-be54-d8dd4e11baf1	g.chr19:15582775C>T	uc002nbf.3	-	3	1402	c.1269G>A	c.(1267-1269)ACG>ACA	p.T423T	PGLYRP2_uc002nbg.3_Silent_p.T423T	NM_052890	NP_443122	Q96PD5	PGRP2_HUMAN	peptidoglycan recognition protein 2 precursor	423					defense response to Gram-positive bacterium|detection of bacterium|innate immune response|peptide amidation|peptidoglycan catabolic process	extracellular region|intracellular|membrane	N-acetylmuramoyl-L-alanine amidase activity|peptidoglycan receptor activity|zinc ion binding			ovary(3)	3						CTGCGCAGCGCGTGAAGTCCG	0.672000												
ZNF536	9745	broad.mit.edu	37	19	31039370	31039370	+	Silent	SNP	A	A	G			TCGA-HU-A4G3-01A-11D-A24D-08	TCGA-HU-A4G3-10A-01D-A24F-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d83776d-2358-427a-bc55-0ae429559d41	bbf11eb7-0258-4973-be54-d8dd4e11baf1	g.chr19:31039370A>G	uc002nsu.1	+	4	2982	c.2844A>G	c.(2842-2844)AAA>AAG	p.K948K	ZNF536_uc010edd.1_Silent_p.K948K	NM_014717	NP_055532	O15090	ZN536_HUMAN	zinc finger protein 536	948					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(7)|large_intestine(2)|skin(2)	11	Esophageal squamous(110;0.0834)					CTTCCATGAAAGTCCACGGAG	0.532000												
RAB4B	53916	broad.mit.edu	37	19	41289827	41289827	+	Missense_Mutation	SNP	C	C	T			TCGA-HU-A4G3-01A-11D-A24D-08	TCGA-HU-A4G3-10A-01D-A24F-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d83776d-2358-427a-bc55-0ae429559d41	bbf11eb7-0258-4973-be54-d8dd4e11baf1	g.chr19:41289827C>T	uc002opd.1	+	5	387	c.277C>T	c.(277-279)CGG>TGG	p.R93W	RAB4B_uc002opc.1_RNA|RAB4B_uc002ope.1_Intron|EGLN2_uc010ehd.2_5'UTR|RAB4B_uc002opf.1_Missense_Mutation_p.R119W	NM_016154	NP_057238	P61018	RAB4B_HUMAN	ras-related GTP-binding protein 4b	93					protein transport|small GTPase mediated signal transduction|vesicle-mediated transport	intracellular|plasma membrane	GTP binding|GTPase activity			skin(1)	1			LUSC - Lung squamous cell carcinoma(20;0.000219)|Lung(22;0.000959)			TCTCCACAGCCGGGAGACATA	0.632000												
AXL	558	broad.mit.edu	37	19	41726556	41726556	+	Missense_Mutation	SNP	A	A	G			TCGA-HU-A4G3-01A-11D-A24D-08	TCGA-HU-A4G3-10A-01D-A24F-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d83776d-2358-427a-bc55-0ae429559d41	bbf11eb7-0258-4973-be54-d8dd4e11baf1	g.chr19:41726556A>G	uc010ehj.2	+	2	291	c.101A>G	c.(100-102)GAA>GGA	p.E34G	CYP2F1_uc010xvw.1_Intron|AXL_uc010ehi.1_Missense_Mutation_p.E34G|AXL_uc010ehk.2_Missense_Mutation_p.E34G	NM_021913	NP_068713	P30530	UFO_HUMAN	AXL receptor tyrosine kinase isoform 1	34	Extracellular (Potential).|Interaction with GAS6.|Ig-like C2-type 1.					integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(4)|stomach(3)|ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)	13						CAGGCTGAAGAAAGTCCCTTC	0.637000												
FBXO46	23403	broad.mit.edu	37	19	46215709	46215709	+	Missense_Mutation	SNP	G	G	A			TCGA-HU-A4G3-01A-11D-A24D-08	TCGA-HU-A4G3-10A-01D-A24F-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d83776d-2358-427a-bc55-0ae429559d41	bbf11eb7-0258-4973-be54-d8dd4e11baf1	g.chr19:46215709G>A	uc002pcy.2	-	2	1170	c.1045C>T	c.(1045-1047)CCG>TCG	p.P349S	FBXO46_uc002pcz.2_Missense_Mutation_p.P349S	NM_001080469	NP_001073938	Q6PJ61	FBX46_HUMAN	F-box protein 46	349							protein binding			ovary(1)|lung(1)|breast(1)	3		Ovarian(192;0.179)|all_neural(266;0.224)		OV - Ovarian serous cystadenocarcinoma(262;0.00568)|GBM - Glioblastoma multiforme(486;0.0844)|Epithelial(262;0.201)		GGGGGCGCCGGGGGAGTGTCC	0.697000												
PNKP	11284	broad.mit.edu	37	19	50367302	50367302	+	Silent	SNP	G	G	A			TCGA-HU-A4G3-01A-11D-A24D-08	TCGA-HU-A4G3-10A-01D-A24F-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d83776d-2358-427a-bc55-0ae429559d41	bbf11eb7-0258-4973-be54-d8dd4e11baf1	g.chr19:50367302G>A	uc002pqh.2	-	6	715	c.663C>T	c.(661-663)AGC>AGT	p.S221S	PNKP_uc002pqg.2_Silent_p.S2S|PNKP_uc002pqi.2_Silent_p.S182S|PNKP_uc002pqj.2_Silent_p.S221S|PNKP_uc010enm.2_Silent_p.S221S|PNKP_uc002pqk.2_Silent_p.S221S	NM_007254	NP_009185	Q96T60	PNKP_HUMAN	polynucleotide kinase 3' phosphatase	221					DNA damage response, detection of DNA damage|DNA-dependent DNA replication|nucleotide-excision repair, DNA damage removal|response to oxidative stress|response to radiation	nucleolus	ATP binding|ATP-dependent polydeoxyribonucleotide 5'-hydroxyl-kinase activity|damaged DNA binding|double-stranded DNA binding|endonuclease activity|nucleotide kinase activity|polynucleotide 3'-phosphatase activity|protein binding			ovary(1)|kidney(1)	2		all_lung(116;1.05e-05)|Lung NSC(112;3.77e-05)|all_neural(266;0.107)|Ovarian(192;0.231)		GBM - Glioblastoma multiforme(134;0.0118)|OV - Ovarian serous cystadenocarcinoma(262;0.0134)		CGCGCCCGATGCTCATCTGGT	0.642000								Other_BER_factors				
MYH14	79784	broad.mit.edu	37	19	50753938	50753938	+	Missense_Mutation	SNP	C	C	T			TCGA-HU-A4G3-01A-11D-A24D-08	TCGA-HU-A4G3-10A-01D-A24F-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d83776d-2358-427a-bc55-0ae429559d41	bbf11eb7-0258-4973-be54-d8dd4e11baf1	g.chr19:50753938C>T	uc002prr.1	+	14	1846	c.1799C>T	c.(1798-1800)GCG>GTG	p.A600V	MYH14_uc010enu.1_Missense_Mutation_p.A608V|MYH14_uc002prq.1_Missense_Mutation_p.A608V	NM_024729	NP_079005	Q7Z406	MYH14_HUMAN	myosin, heavy chain 14 isoform 2	600	Myosin head-like.				axon guidance|regulation of cell shape	myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			central_nervous_system(1)	1		all_neural(266;0.0571)|Ovarian(192;0.0728)		OV - Ovarian serous cystadenocarcinoma(262;0.00389)|GBM - Glioblastoma multiforme(134;0.0195)		CTCCACTACGCGGGCAAGGTA	0.647000												
FPR2	2358	broad.mit.edu	37	19	52272221	52272221	+	Missense_Mutation	SNP	G	G	A	rs117415514	by1000genomes	TCGA-HU-A4G3-01A-11D-A24D-08	TCGA-HU-A4G3-10A-01D-A24F-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d83776d-2358-427a-bc55-0ae429559d41	bbf11eb7-0258-4973-be54-d8dd4e11baf1	g.chr19:52272221G>A	uc002pxr.2	+	2	355	c.310G>A	c.(310-312)GTG>ATG	p.V104M	FPR2_uc002pxs.3_Missense_Mutation_p.V104M|FPR2_uc010epf.2_Missense_Mutation_p.V104M	NM_001005738	NP_001005738	P25090	FPR2_HUMAN	formyl peptide receptor-like 1	104	Helical; Name=3; (Potential).				cell adhesion|cellular component movement|chemotaxis|inflammatory response	integral to membrane|plasma membrane	N-formyl peptide receptor activity			lung(3)|ovary(1)	4						AATTCACATCGTGGTGGACAT	0.483000												
ZSCAN5B	342933	broad.mit.edu	37	19	56701542	56701542	+	Missense_Mutation	SNP	C	C	A			TCGA-HU-A4G3-01A-11D-A24D-08	TCGA-HU-A4G3-10A-01D-A24F-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d83776d-2358-427a-bc55-0ae429559d41	bbf11eb7-0258-4973-be54-d8dd4e11baf1	g.chr19:56701542C>A	uc010ygh.1	-	4	1142	c.1142G>T	c.(1141-1143)AGA>ATA	p.R381I		NM_001080456	NP_001073925	A6NJL1	ZSA5B_HUMAN	zinc finger and SCAN domain containing 5B	381					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|skin(1)	2						TTGAAAGGGTCTGTCTCCTGT	0.532000												
ATP6V1C2	245973	broad.mit.edu	37	2	10912017	10912017	+	Missense_Mutation	SNP	G	G	A			TCGA-HU-A4G3-01A-11D-A24D-08	TCGA-HU-A4G3-10A-01D-A24F-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d83776d-2358-427a-bc55-0ae429559d41	bbf11eb7-0258-4973-be54-d8dd4e11baf1	g.chr2:10912017G>A	uc002ras.2	+	7	632	c.523G>A	c.(523-525)GTG>ATG	p.V175M	ATP6V1C2_uc002rat.2_Missense_Mutation_p.V175M	NM_001039362	NP_001034451	Q8NEY4	VATC2_HUMAN	vacuolar H+ ATPase C2 isoform a	175					ATP hydrolysis coupled proton transport|cellular iron ion homeostasis|insulin receptor signaling pathway|transferrin transport	cytosol|proton-transporting V-type ATPase, V1 domain				ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.191)			Epithelial(75;0.15)|OV - Ovarian serous cystadenocarcinoma(76;0.152)		AGAGGACTTCGTGCTGGATTC	0.532000												
EIF2B4	8890	broad.mit.edu	37	2	27587757	27587757	+	Silent	SNP	C	C	T			TCGA-HU-A4G3-01A-11D-A24D-08	TCGA-HU-A4G3-10A-01D-A24F-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d83776d-2358-427a-bc55-0ae429559d41	bbf11eb7-0258-4973-be54-d8dd4e11baf1	g.chr2:27587757C>T	uc002rkb.2	-	12	1343	c.1200G>A	c.(1198-1200)AAG>AAA	p.K400K	EIF2B4_uc002rjz.2_Silent_p.K420K|EIF2B4_uc002rka.2_Silent_p.K385K|EIF2B4_uc002rkc.2_Silent_p.K399K|EIF2B4_uc002rkd.2_Silent_p.K194K|EIF2B4_uc002rke.2_Silent_p.K369K	NM_001034116	NP_001029288	Q9UI10	EI2BD_HUMAN	eukaryotic translation initiation factor 2B,	400					myelination|negative regulation of translational initiation in response to stress|oligodendrocyte development|ovarian follicle development|response to glucose stimulus|response to heat|response to peptide hormone stimulus	cytosol|eukaryotic translation initiation factor 2B complex	translation initiation factor activity|translation initiation factor binding				0	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					CCAATAGCACCTTGGAAACCT	0.473000												
DPP10	57628	broad.mit.edu	37	2	116101485	116101485	+	Missense_Mutation	SNP	A	A	G			TCGA-HU-A4G3-01A-11D-A24D-08	TCGA-HU-A4G3-10A-01D-A24F-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d83776d-2358-427a-bc55-0ae429559d41	bbf11eb7-0258-4973-be54-d8dd4e11baf1	g.chr2:116101485A>G	uc002tla.1	+	3	725	c.268A>G	c.(268-270)AAT>GAT	p.N90D	DPP10_uc002tlb.1_Missense_Mutation_p.N40D|DPP10_uc002tlc.1_Missense_Mutation_p.N86D|DPP10_uc002tle.2_Missense_Mutation_p.N94D|DPP10_uc002tlf.1_Missense_Mutation_p.N83D	NM_020868	NP_065919	Q8N608	DPP10_HUMAN	dipeptidyl peptidase 10 isoform long	90	Extracellular (Potential).				proteolysis	integral to membrane|membrane fraction	serine-type peptidase activity			ovary(5)|large_intestine(2)|skin(2)|breast(1)	10						TCGGTGGATCAATGGTAAGTG	0.294000												
MCM6	4175	broad.mit.edu	37	2	136616960	136616960	+	Missense_Mutation	SNP	T	T	C			TCGA-HU-A4G3-01A-11D-A24D-08	TCGA-HU-A4G3-10A-01D-A24F-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d83776d-2358-427a-bc55-0ae429559d41	bbf11eb7-0258-4973-be54-d8dd4e11baf1	g.chr2:136616960T>C	uc002tuw.2	-	9	1349	c.1273A>G	c.(1273-1275)AGT>GGT	p.S425G		NM_005915	NP_005906	Q14566	MCM6_HUMAN	minichromosome maintenance complex component 6	425	MCM.				cell cycle checkpoint|DNA strand elongation involved in DNA replication|DNA-dependent DNA replication initiation|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|S phase of mitotic cell cycle	MCM complex	ATP binding|identical protein binding				0				BRCA - Breast invasive adenocarcinoma(221;0.166)	Atorvastatin(DB01076)	CCAGCAGCACTGGACGCTTTA	0.443000												
THSD7B	80731	broad.mit.edu	37	2	138414450	138414450	+	Missense_Mutation	SNP	G	G	T			TCGA-HU-A4G3-01A-11D-A24D-08	TCGA-HU-A4G3-10A-01D-A24F-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d83776d-2358-427a-bc55-0ae429559d41	bbf11eb7-0258-4973-be54-d8dd4e11baf1	g.chr2:138414450G>T	uc002tva.1	+	22	4103	c.4103G>T	c.(4102-4104)CGC>CTC	p.R1368L	THSD7B_uc010zbj.1_Intron	NM_001080427	NP_001073896			thrombospondin, type I, domain containing 7B											ovary(4)|central_nervous_system(2)|pancreas(1)	7				BRCA - Breast invasive adenocarcinoma(221;0.19)		ACTGTGGGCCGCCAGTCTAGA	0.473000												
NRP2	8828	broad.mit.edu	37	2	206617692	206617692	+	Silent	SNP	G	G	A			TCGA-HU-A4G3-01A-11D-A24D-08	TCGA-HU-A4G3-10A-01D-A24F-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d83776d-2358-427a-bc55-0ae429559d41	bbf11eb7-0258-4973-be54-d8dd4e11baf1	g.chr2:206617692G>A	uc002vaw.2	+	12	2828	c.2037G>A	c.(2035-2037)ACG>ACA	p.T679T	NRP2_uc002vau.2_Silent_p.T679T|NRP2_uc002vav.2_Silent_p.T679T|NRP2_uc002vax.2_Silent_p.T679T|NRP2_uc002vay.2_Silent_p.T679T	NM_201266	NP_957718	O60462	NRP2_HUMAN	neuropilin 2 isoform 1 precursor	679	Extracellular (Potential).|MAM.				angiogenesis|axon guidance|cell adhesion	integral to membrane|membrane fraction|plasma membrane	heparin binding|metal ion binding|semaphorin receptor activity|vascular endothelial growth factor receptor activity			skin(2)|ovary(1)|central_nervous_system(1)	4						ACGACCGGACGTTTCCAGGTA	0.527000												
B3GNT7	93010	broad.mit.edu	37	2	232262881	232262881	+	Missense_Mutation	SNP	G	G	A			TCGA-HU-A4G3-01A-11D-A24D-08	TCGA-HU-A4G3-10A-01D-A24F-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d83776d-2358-427a-bc55-0ae429559d41	bbf11eb7-0258-4973-be54-d8dd4e11baf1	g.chr2:232262881G>A	uc002vrs.2	+	2	631	c.451G>A	c.(451-453)GAG>AAG	p.E151K		NM_145236	NP_660279	Q8NFL0	B3GN7_HUMAN	UDP-GlcNAc:betaGal	151	Lumenal (Potential).				protein glycosylation	Golgi membrane|integral to membrane	galactosyltransferase activity				0		Renal(207;0.025)|all_hematologic(139;0.094)|Acute lymphoblastic leukemia(138;0.164)|Medulloblastoma(418;0.232)		Epithelial(121;3.22e-11)|LUSC - Lung squamous cell carcinoma(224;0.0115)|Lung(119;0.0139)		CGACCGCCGCGAGGCCATCCG	0.697000												
HDAC4	9759	broad.mit.edu	37	2	240003864	240003864	+	Silent	SNP	G	G	A			TCGA-HU-A4G3-01A-11D-A24D-08	TCGA-HU-A4G3-10A-01D-A24F-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d83776d-2358-427a-bc55-0ae429559d41	bbf11eb7-0258-4973-be54-d8dd4e11baf1	g.chr2:240003864G>A	uc002vyk.3	-	21	3363	c.2571C>T	c.(2569-2571)GTC>GTT	p.V857V	HDAC4_uc010fyy.2_Silent_p.V814V	NM_006037	NP_006028	P56524	HDAC4_HUMAN	histone deacetylase 4	857	Histone deacetylase.				B cell differentiation|cardiac muscle hypertrophy in response to stress|chromatin remodeling|histone H3 deacetylation|histone H4 deacetylation|inflammatory response|negative regulation of glycolysis|negative regulation of myotube differentiation|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription from RNA polymerase II promoter|nervous system development|peptidyl-lysine deacetylation|positive regulation of cell proliferation|positive regulation of protein sumoylation|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|regulation of protein binding|response to denervation involved in regulation of muscle adaptation|response to interleukin-1|transcription, DNA-dependent	histone deacetylase complex|transcriptional repressor complex	activating transcription factor binding|histone deacetylase activity (H3-K16 specific)|histone deacetylase binding|NAD-dependent histone deacetylase activity (H3-K14 specific)|NAD-dependent histone deacetylase activity (H3-K9 specific)|NAD-dependent histone deacetylase activity (H4-K16 specific)|potassium ion binding|repressing transcription factor binding|zinc ion binding			breast(3)|skin(2)|ovary(1)	6		all_epithelial(40;1.45e-17)|Breast(86;1.53e-05)|Renal(207;0.000355)|all_lung(227;0.0121)|Ovarian(221;0.0183)|Lung NSC(271;0.0413)|Melanoma(123;0.0749)|all_hematologic(139;0.159)		Epithelial(121;6.38e-25)|OV - Ovarian serous cystadenocarcinoma(60;2.48e-12)|Kidney(56;6.04e-08)|KIRC - Kidney renal clear cell carcinoma(57;1.18e-06)|BRCA - Breast invasive adenocarcinoma(100;3.99e-05)|Lung(119;0.00942)|LUSC - Lung squamous cell carcinoma(224;0.04)		ACATGTACAGGACGCTGGGGT	0.582000												
COL6A2	1292	broad.mit.edu	37	21	47531946	47531946	+	Missense_Mutation	SNP	G	G	A			TCGA-HU-A4G3-01A-11D-A24D-08	TCGA-HU-A4G3-10A-01D-A24F-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d83776d-2358-427a-bc55-0ae429559d41	bbf11eb7-0258-4973-be54-d8dd4e11baf1	g.chr21:47531946G>A	uc002zia.1	+	3	251	c.169G>A	c.(169-171)GTC>ATC	p.V57I	COL6A2_uc002zhy.1_Missense_Mutation_p.V57I|COL6A2_uc002zhz.1_Missense_Mutation_p.V57I|COL6A2_uc002zib.1_Intron	NM_001849	NP_001840	P12110	CO6A2_HUMAN	alpha 2 type VI collagen isoform 2C2 precursor	57	VWFA 1.|Nonhelical region.				axon guidance|cell-cell adhesion|extracellular matrix organization|protein heterotrimerization	collagen|extracellular space|protein complex	extracellular matrix structural constituent|protein binding, bridging			central_nervous_system(7)|ovary(1)	8	Breast(49;0.245)			Colorectal(79;0.0303)|READ - Rectum adenocarcinoma(84;0.0649)		CTCGGAGAGCGTCACCATGCA	0.602000												
AP1B1	162	broad.mit.edu	37	22	29727456	29727456	+	Missense_Mutation	SNP	C	C	T			TCGA-HU-A4G3-01A-11D-A24D-08	TCGA-HU-A4G3-10A-01D-A24F-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d83776d-2358-427a-bc55-0ae429559d41	bbf11eb7-0258-4973-be54-d8dd4e11baf1	g.chr22:29727456C>T	uc003afj.2	-	19	2690	c.2506G>A	c.(2506-2508)GTG>ATG	p.V836M	AP1B1_uc003afi.2_Missense_Mutation_p.V829M|AP1B1_uc003afk.2_Missense_Mutation_p.V829M|AP1B1_uc003afl.2_Missense_Mutation_p.V809M|AP1B1_uc003afh.2_Missense_Mutation_p.V33M|AP1B1_uc011ako.1_Missense_Mutation_p.V389M	NM_001127	NP_001118	Q10567	AP1B1_HUMAN	adaptor-related protein complex 1 beta 1 subunit	836					endocytosis|intracellular protein transport|post-Golgi vesicle-mediated transport|regulation of defense response to virus by virus|viral reproduction	clathrin adaptor complex|clathrin coated vesicle membrane|cytosol|Golgi membrane|lysosomal membrane	protein binding|protein transporter activity			ovary(1)|skin(1)	2						CCGTCCTCCACAAAGAGGATG	0.582000												
CPNE9	151835	broad.mit.edu	37	3	9754697	9754697	+	Missense_Mutation	SNP	C	C	T			TCGA-HU-A4G3-01A-11D-A24D-08	TCGA-HU-A4G3-10A-01D-A24F-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d83776d-2358-427a-bc55-0ae429559d41	bbf11eb7-0258-4973-be54-d8dd4e11baf1	g.chr3:9754697C>T	uc003bsd.2	+	9	755	c.584C>T	c.(583-585)ACG>ATG	p.T195M		NM_153635	NP_705899	Q8IYJ1	CPNE9_HUMAN	copine-like protein	195	C2 2.									ovary(2)	2	Medulloblastoma(99;0.227)					GTGAAAAACACGCTGAATCCT	0.537000												
CCDC71	64925	broad.mit.edu	37	3	49201319	49201319	+	Missense_Mutation	SNP	C	C	T			TCGA-HU-A4G3-01A-11D-A24D-08	TCGA-HU-A4G3-10A-01D-A24F-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d83776d-2358-427a-bc55-0ae429559d41	bbf11eb7-0258-4973-be54-d8dd4e11baf1	g.chr3:49201319C>T	uc003cwg.3	-	2	461	c.323G>A	c.(322-324)CGG>CAG	p.R108Q		NM_022903	NP_075054	Q8IV32	CCD71_HUMAN	coiled-coil domain containing 71	108										ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;8.01e-05)|Kidney(197;0.00217)|KIRC - Kidney renal clear cell carcinoma(197;0.00244)		TGCAGGCAACCGCATGGCAGT	0.602000												
CNTN3	5067	broad.mit.edu	37	3	74350678	74350678	+	Missense_Mutation	SNP	T	T	C			TCGA-HU-A4G3-01A-11D-A24D-08	TCGA-HU-A4G3-10A-01D-A24F-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d83776d-2358-427a-bc55-0ae429559d41	bbf11eb7-0258-4973-be54-d8dd4e11baf1	g.chr3:74350678T>C	uc003dpm.1	-	15	2046	c.1966A>G	c.(1966-1968)AAG>GAG	p.K656E		NM_020872	NP_065923	Q9P232	CNTN3_HUMAN	contactin 3 precursor	656	Fibronectin type-III 1.				cell adhesion	anchored to membrane|plasma membrane	protein binding			breast(3)|ovary(1)|skin(1)	5		Lung NSC(201;0.138)|Lung SC(41;0.21)		Epithelial(33;0.00212)|BRCA - Breast invasive adenocarcinoma(55;0.00258)|LUSC - Lung squamous cell carcinoma(21;0.00461)|Lung(16;0.01)		GTGTGCGTCTTCCCATCGATG	0.433000												
CNTN3	5067	broad.mit.edu	37	3	74385746	74385746	+	Silent	SNP	A	A	G			TCGA-HU-A4G3-01A-11D-A24D-08	TCGA-HU-A4G3-10A-01D-A24F-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d83776d-2358-427a-bc55-0ae429559d41	bbf11eb7-0258-4973-be54-d8dd4e11baf1	g.chr3:74385746A>G	uc003dpm.1	-	11	1508	c.1428T>C	c.(1426-1428)ACT>ACC	p.T476T		NM_020872	NP_065923	Q9P232	CNTN3_HUMAN	contactin 3 precursor	476	Ig-like C2-type 5.				cell adhesion	anchored to membrane|plasma membrane	protein binding			breast(3)|ovary(1)|skin(1)	5		Lung NSC(201;0.138)|Lung SC(41;0.21)		Epithelial(33;0.00212)|BRCA - Breast invasive adenocarcinoma(55;0.00258)|LUSC - Lung squamous cell carcinoma(21;0.00461)|Lung(16;0.01)		TGCAGGTGTAAGTTCCAGCAT	0.353000												
ZBTB38	253461	broad.mit.edu	37	3	141162486	141162486	+	Missense_Mutation	SNP	G	G	C			TCGA-HU-A4G3-01A-11D-A24D-08	TCGA-HU-A4G3-10A-01D-A24F-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d83776d-2358-427a-bc55-0ae429559d41	bbf11eb7-0258-4973-be54-d8dd4e11baf1	g.chr3:141162486G>C	uc003etw.2	+	8	2238	c.1256G>C	c.(1255-1257)GGA>GCA	p.G419A	ZBTB38_uc010hun.2_Missense_Mutation_p.G416A|ZBTB38_uc010huo.2_Missense_Mutation_p.G419A|ZBTB38_uc003ety.2_Missense_Mutation_p.G419A|ZBTB38_uc010hup.2_Missense_Mutation_p.G420A	NM_001080412	NP_001073881	Q8NAP3	ZBT38_HUMAN	zinc finger and BTB domain containing 38	419					positive regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(3)	3						GGACAAAATGGAGGTTCATTC	0.433000												
LRBA	987	broad.mit.edu	37	4	151223860	151223860	+	Missense_Mutation	SNP	T	T	A	rs150233251		TCGA-HU-A4G3-01A-11D-A24D-08	TCGA-HU-A4G3-10A-01D-A24F-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d83776d-2358-427a-bc55-0ae429559d41	bbf11eb7-0258-4973-be54-d8dd4e11baf1	g.chr4:151223860T>A	uc010ipj.2	-	54	8441	c.7967A>T	c.(7966-7968)TAC>TTC	p.Y2656F	LRBA_uc010ipi.2_Missense_Mutation_p.Y178F|LRBA_uc003ils.3_Missense_Mutation_p.Y551F|LRBA_uc003ilt.3_Missense_Mutation_p.Y1304F|LRBA_uc003ilu.3_Missense_Mutation_p.Y2645F|LRBA_uc003ilr.3_Missense_Mutation_p.Y76F	NM_006726	NP_006717	P50851	LRBA_HUMAN	LPS-responsive vesicle trafficking, beach and	2656	WD 3.					endoplasmic reticulum|Golgi apparatus|integral to membrane|lysosome|plasma membrane	protein binding			ovary(3)|breast(3)|skin(1)	7	all_hematologic(180;0.151)					TGAGAGAATGTAGCAATTTCC	0.438000												
TRIML2	205860	broad.mit.edu	37	4	189012685	189012685	+	Missense_Mutation	SNP	C	C	G			TCGA-HU-A4G3-01A-11D-A24D-08	TCGA-HU-A4G3-10A-01D-A24F-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d83776d-2358-427a-bc55-0ae429559d41	bbf11eb7-0258-4973-be54-d8dd4e11baf1	g.chr4:189012685C>G	uc003izl.2	-	7	1042	c.1006G>C	c.(1006-1008)GTG>CTG	p.V336L	TRIML2_uc003izj.1_Missense_Mutation_p.V164L|TRIML2_uc003izk.1_Missense_Mutation_p.V144L|TRIML2_uc011cle.1_Missense_Mutation_p.V411L	NM_173553	NP_775824	Q8N7C3	TRIMM_HUMAN	tripartite motif family-like 2	336	B30.2/SPRY.						ligase activity			central_nervous_system(2)	2		all_cancers(14;3.11e-44)|all_epithelial(14;7.86e-31)|all_lung(41;4.3e-13)|Lung NSC(41;9.69e-13)|Melanoma(20;7.86e-05)|Breast(6;0.000148)|all_hematologic(60;0.0202)|Hepatocellular(41;0.0218)|Renal(120;0.0376)|Prostate(90;0.0513)		OV - Ovarian serous cystadenocarcinoma(60;1.79e-11)|BRCA - Breast invasive adenocarcinoma(30;4.52e-06)|GBM - Glioblastoma multiforme(59;1.62e-05)|STAD - Stomach adenocarcinoma(60;0.000279)|LUSC - Lung squamous cell carcinoma(40;0.0091)|READ - Rectum adenocarcinoma(43;0.163)		ATCTCGGTCACATTGTAGAAT	0.498000												
SLC12A7	10723	broad.mit.edu	37	5	1063979	1063979	+	Missense_Mutation	SNP	C	C	T			TCGA-HU-A4G3-01A-11D-A24D-08	TCGA-HU-A4G3-10A-01D-A24F-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d83776d-2358-427a-bc55-0ae429559d41	bbf11eb7-0258-4973-be54-d8dd4e11baf1	g.chr5:1063979C>T	uc003jbu.2	-	20	2785	c.2719G>A	c.(2719-2721)GAG>AAG	p.E907K		NM_006598	NP_006589	Q9Y666	S12A7_HUMAN	solute carrier family 12 (potassium/chloride	907	Cytoplasmic (Potential).				potassium ion transport|sodium ion transport	integral to plasma membrane	potassium:chloride symporter activity			skin(2)|large_intestine(1)|ovary(1)	4	Lung NSC(6;2.47e-13)|all_lung(6;1.67e-12)|all_epithelial(6;5.44e-09)		Epithelial(17;0.000497)|OV - Ovarian serous cystadenocarcinoma(19;0.00239)|all cancers(22;0.00241)|Lung(60;0.165)		Potassium Chloride(DB00761)	ACCTCCACCTCGGCGCTGATG	0.403000												
BASP1	10409	broad.mit.edu	37	5	17275371	17275371	+	Missense_Mutation	SNP	G	G	A			TCGA-HU-A4G3-01A-11D-A24D-08	TCGA-HU-A4G3-10A-01D-A24F-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d83776d-2358-427a-bc55-0ae429559d41	bbf11eb7-0258-4973-be54-d8dd4e11baf1	g.chr5:17275371G>A	uc003jfx.2	+	2	225	c.46G>A	c.(46-48)GAC>AAC	p.D16N		NM_006317	NP_006308	P80723	BASP1_HUMAN	brain abundant, membrane attached signal protein	16					glomerular visceral epithelial cell differentiation|negative regulation of transcription, DNA-dependent	cytoplasm|cytoskeleton|growth cone|nuclear speck|plasma membrane	protein domain specific binding|transcription corepressor activity|transcription regulatory region DNA binding				0						CAATGTGAACGACGAGAAAGC	0.572000												
ADAMTS12	81792	broad.mit.edu	37	5	33624378	33624378	+	Missense_Mutation	SNP	A	A	G			TCGA-HU-A4G3-01A-11D-A24D-08	TCGA-HU-A4G3-10A-01D-A24F-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d83776d-2358-427a-bc55-0ae429559d41	bbf11eb7-0258-4973-be54-d8dd4e11baf1	g.chr5:33624378A>G	uc003jia.1	-	14	2264	c.2101T>C	c.(2101-2103)TGC>CGC	p.C701R	ADAMTS12_uc010iuq.1_Intron	NM_030955	NP_112217	P58397	ATS12_HUMAN	ADAM metallopeptidase with thrombospondin type 1	701	Spacer 1.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|lung(1)|kidney(1)	9						ACAGTCTGGCAGGAAGAGCCA	0.502000										HNSCC(64;0.19)		
LMBRD2	92255	broad.mit.edu	37	5	36122478	36122478	+	Missense_Mutation	SNP	T	T	C			TCGA-HU-A4G3-01A-11D-A24D-08	TCGA-HU-A4G3-10A-01D-A24F-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d83776d-2358-427a-bc55-0ae429559d41	bbf11eb7-0258-4973-be54-d8dd4e11baf1	g.chr5:36122478T>C	uc003jkb.1	-	9	1439	c.1024A>G	c.(1024-1026)AAA>GAA	p.K342E		NM_001007527	NP_001007528	Q68DH5	LMBD2_HUMAN	LMBR1 domain containing 2	342	Cytoplasmic (Potential).					integral to membrane					0	all_lung(31;0.000146)		Epithelial(62;0.0396)|Lung(74;0.111)|all cancers(62;0.115)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			GTTTCATTTTTTGCTACATCT	0.343000												
WDR70	55100	broad.mit.edu	37	5	37381716	37381716	+	Missense_Mutation	SNP	G	G	A			TCGA-HU-A4G3-01A-11D-A24D-08	TCGA-HU-A4G3-10A-01D-A24F-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d83776d-2358-427a-bc55-0ae429559d41	bbf11eb7-0258-4973-be54-d8dd4e11baf1	g.chr5:37381716G>A	uc003jkv.2	+	3	162	c.104G>A	c.(103-105)CGC>CAC	p.R35H	WDR70_uc010iva.1_Missense_Mutation_p.R35H	NM_018034	NP_060504	Q9NW82	WDR70_HUMAN	WD repeat domain 70	35										ovary(1)|central_nervous_system(1)	2	all_lung(31;0.000285)		COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			AAAAAAGCTCGCACATTTGAC	0.378000												
CARD6	84674	broad.mit.edu	37	5	40852977	40852977	+	Missense_Mutation	SNP	G	G	A	rs76751505	by1000genomes	TCGA-HU-A4G3-01A-11D-A24D-08	TCGA-HU-A4G3-10A-01D-A24F-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d83776d-2358-427a-bc55-0ae429559d41	bbf11eb7-0258-4973-be54-d8dd4e11baf1	g.chr5:40852977G>A	uc003jmg.2	+	3	1618	c.1543G>A	c.(1543-1545)GAT>AAT	p.D515N		NM_032587	NP_115976	Q9BX69	CARD6_HUMAN	caspase recruitment domain family, member 6	515					apoptosis|regulation of apoptosis	intracellular				ovary(2)|skin(2)|lung(1)	5						TCCTGATAGCGATGATAGAAA	0.413000												
HEATR7B2	133558	broad.mit.edu	37	5	41009497	41009497	+	Missense_Mutation	SNP	G	G	A			TCGA-HU-A4G3-01A-11D-A24D-08	TCGA-HU-A4G3-10A-01D-A24F-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d83776d-2358-427a-bc55-0ae429559d41	bbf11eb7-0258-4973-be54-d8dd4e11baf1	g.chr5:41009497G>A	uc003jmj.3	-	32	3795	c.3305C>T	c.(3304-3306)ACA>ATA	p.T1102I	HEATR7B2_uc003jmi.3_Missense_Mutation_p.T657I	NM_173489	NP_775760	Q7Z745	HTRB2_HUMAN	HEAT repeat family member 7B2	1102							binding			ovary(6)|central_nervous_system(2)	8						CTTCCACAATGTCTTTGTGTC	0.478000												
HEATR7B2	133558	broad.mit.edu	37	5	41065470	41065470	+	Silent	SNP	G	G	A			TCGA-HU-A4G3-01A-11D-A24D-08	TCGA-HU-A4G3-10A-01D-A24F-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d83776d-2358-427a-bc55-0ae429559d41	bbf11eb7-0258-4973-be54-d8dd4e11baf1	g.chr5:41065470G>A	uc003jmj.3	-	4	814	c.324C>T	c.(322-324)TTC>TTT	p.F108F		NM_173489	NP_775760	Q7Z745	HTRB2_HUMAN	HEAT repeat family member 7B2	108							binding			ovary(6)|central_nervous_system(2)	8						CAAGCACAACGAATTCATCTG	0.418000												
ADAMTS19	171019	broad.mit.edu	37	5	128844930	128844930	+	Missense_Mutation	SNP	T	T	G			TCGA-HU-A4G3-01A-11D-A24D-08	TCGA-HU-A4G3-10A-01D-A24F-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d83776d-2358-427a-bc55-0ae429559d41	bbf11eb7-0258-4973-be54-d8dd4e11baf1	g.chr5:128844930T>G	uc003kvb.1	+	3	890	c.890T>G	c.(889-891)ATT>AGT	p.I297S	ADAMTS19_uc003kvc.1_RNA	NM_133638	NP_598377	Q8TE59	ATS19_HUMAN	ADAM metallopeptidase with thrombospondin type 1	297	Cysteine switch (By similarity).				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(5)|breast(2)|lung(1)|skin(1)	9		all_cancers(142;0.0148)|Prostate(80;0.0494)|Breast(839;0.238)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)	OV - Ovarian serous cystadenocarcinoma(64;0.222)		TGTGGTATCATTTCAGGTAAA	0.383000												
PCDHB13	56123	broad.mit.edu	37	5	140595117	140595117	+	Silent	SNP	C	C	T			TCGA-HU-A4G3-01A-11D-A24D-08	TCGA-HU-A4G3-10A-01D-A24F-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d83776d-2358-427a-bc55-0ae429559d41	bbf11eb7-0258-4973-be54-d8dd4e11baf1	g.chr5:140595117C>T	uc003lja.1	+	1	1609	c.1422C>T	c.(1420-1422)AGC>AGT	p.S474S		NM_018933	NP_061756	Q9Y5F0	PCDBD_HUMAN	protocadherin beta 13 precursor	474	Extracellular (Potential).|Cadherin 5.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding			skin(2)|ovary(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GCAGCGTCAGCGCTACAGACA	0.637000												
PCDHGB6	56100	broad.mit.edu	37	5	140789451	140789451	+	Missense_Mutation	SNP	G	G	A			TCGA-HU-A4G3-01A-11D-A24D-08	TCGA-HU-A4G3-10A-01D-A24F-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d83776d-2358-427a-bc55-0ae429559d41	bbf11eb7-0258-4973-be54-d8dd4e11baf1	g.chr5:140789451G>A	uc003lkj.1	+	1	1682	c.1682G>A	c.(1681-1683)CGG>CAG	p.R561Q	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc003lkf.1_Intron|PCDHGA9_uc003lkh.1_Intron|PCDHGB6_uc003lki.1_Missense_Mutation_p.R561Q	NM_018926	NP_061749	Q9Y5F9	PCDGI_HUMAN	protocadherin gamma subfamily B, 6 isoform 1	561	Extracellular (Potential).|Cadherin 5.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AACGCACCGCGGGTGCTGTAC	0.657000												
HDAC3	8841	broad.mit.edu	37	5	141009657	141009657	+	Missense_Mutation	SNP	C	C	T			TCGA-HU-A4G3-01A-11D-A24D-08	TCGA-HU-A4G3-10A-01D-A24F-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d83776d-2358-427a-bc55-0ae429559d41	bbf11eb7-0258-4973-be54-d8dd4e11baf1	g.chr5:141009657C>T	uc003llf.2	-	4	383	c.317G>A	c.(316-318)CGT>CAT	p.R106H	HDAC3_uc003lle.1_Missense_Mutation_p.R49H|HDAC3_uc010jgd.1_Intron|HDAC3_uc010jge.1_Intron	NM_003883	NP_003874	O15379	HDAC3_HUMAN	histone deacetylase 3	106	Histone deacetylase.				anti-apoptosis|cellular lipid metabolic process|negative regulation of cell cycle|negative regulation of JNK cascade|negative regulation of transcription from RNA polymerase II promoter|nerve growth factor receptor signaling pathway|spindle assembly|transcription, DNA-dependent	cytoplasm|histone deacetylase complex|spindle microtubule|transcriptional repressor complex	histone deacetylase activity (H3-K16 specific)|histone deacetylase binding|NAD-dependent histone deacetylase activity (H3-K14 specific)|NAD-dependent histone deacetylase activity (H3-K9 specific)|NAD-dependent histone deacetylase activity (H4-K16 specific)|transcription corepressor activity|transcription factor binding			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)		Vorinostat(DB02546)	GCCTGTGTAACGCGAGCAGAA	0.567000												
PPP2R2B	5521	broad.mit.edu	37	5	145979951	145979951	+	Missense_Mutation	SNP	T	T	G			TCGA-HU-A4G3-01A-11D-A24D-08	TCGA-HU-A4G3-10A-01D-A24F-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d83776d-2358-427a-bc55-0ae429559d41	bbf11eb7-0258-4973-be54-d8dd4e11baf1	g.chr5:145979951T>G	uc003loe.2	-	7	1388	c.863A>C	c.(862-864)AAG>ACG	p.K288T	PPP2R2B_uc010jgm.2_Missense_Mutation_p.K277T|PPP2R2B_uc003log.3_Missense_Mutation_p.K288T|PPP2R2B_uc003lof.3_Missense_Mutation_p.K288T|PPP2R2B_uc003loi.3_Missense_Mutation_p.K291T|PPP2R2B_uc003loh.3_Missense_Mutation_p.K288T|PPP2R2B_uc003loj.3_Missense_Mutation_p.K268T|PPP2R2B_uc003lok.3_Missense_Mutation_p.K277T|PPP2R2B_uc011dbu.1_Missense_Mutation_p.K294T|PPP2R2B_uc011dbv.1_Missense_Mutation_p.K346T	NM_004576	NP_004567	Q00005	2ABB_HUMAN	beta isoform of regulatory subunit B55, protein	288	WD 5.				apoptosis|signal transduction	cytoskeleton|mitochondrial outer membrane|protein phosphatase type 2A complex	protein binding|protein phosphatase type 2A regulator activity			ovary(1)|prostate(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			GTGGCTGAACTTCACATCCGA	0.438000												
UHRF1BP1	54887	broad.mit.edu	37	6	34826708	34826708	+	Missense_Mutation	SNP	A	A	G			TCGA-HU-A4G3-01A-11D-A24D-08	TCGA-HU-A4G3-10A-01D-A24F-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d83776d-2358-427a-bc55-0ae429559d41	bbf11eb7-0258-4973-be54-d8dd4e11baf1	g.chr6:34826708A>G	uc003oju.3	+	14	2809	c.2575A>G	c.(2575-2577)ATG>GTG	p.M859V	UHRF1BP1_uc010jvm.1_RNA|UHRF1BP1_uc010jvn.2_RNA|UHRF1BP1_uc010jvo.2_RNA	NM_017754	NP_060224	Q6BDS2	URFB1_HUMAN	ICBP90 binding protein 1	859	Potential.									ovary(3)	3						TACAGAGTCAATGACTGGGTC	0.552000												
EYS	346007	broad.mit.edu	37	6	66204928	66204928	+	Missense_Mutation	SNP	A	A	C			TCGA-HU-A4G3-01A-11D-A24D-08	TCGA-HU-A4G3-10A-01D-A24F-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d83776d-2358-427a-bc55-0ae429559d41	bbf11eb7-0258-4973-be54-d8dd4e11baf1	g.chr6:66204928A>C	uc011dxu.1	-	4	914	c.376T>G	c.(376-378)TTT>GTT	p.F126V	EYS_uc003peq.2_Missense_Mutation_p.F126V|EYS_uc003per.1_Missense_Mutation_p.F126V|EYS_uc010kaj.1_RNA	NM_001142800	NP_001136272	Q5T1H1	EYS_HUMAN	eyes shut homolog isoform 1	126					response to stimulus|visual perception	extracellular region	calcium ion binding			lung(4)|ovary(1)|skin(1)	6						CTGCAGCCAAAAAGTAACTGA	0.383000												
HECA	51696	broad.mit.edu	37	6	139488014	139488014	+	Missense_Mutation	SNP	C	C	T			TCGA-HU-A4G3-01A-11D-A24D-08	TCGA-HU-A4G3-10A-01D-A24F-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d83776d-2358-427a-bc55-0ae429559d41	bbf11eb7-0258-4973-be54-d8dd4e11baf1	g.chr6:139488014C>T	uc003qin.2	+	2	1150	c.865C>T	c.(865-867)CGC>TGC	p.R289C		NM_016217	NP_057301	Q9UBI9	HDC_HUMAN	headcase	289					respiratory tube development						0				GBM - Glioblastoma multiforme(68;0.000252)|OV - Ovarian serous cystadenocarcinoma(155;0.000387)		CAGCGGCCCCCGCTCCTCCAG	0.647000												
TWIST1	7291	broad.mit.edu	37	7	19156576	19156576	+	Silent	SNP	C	C	T	rs144664279	byFrequency	TCGA-HU-A4G3-01A-11D-A24D-08	TCGA-HU-A4G3-10A-01D-A24F-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d83776d-2358-427a-bc55-0ae429559d41	bbf11eb7-0258-4973-be54-d8dd4e11baf1	g.chr7:19156576C>T	uc003sum.2	-	1	720	c.369G>A	c.(367-369)TCG>TCA	p.S123S		NM_000474	NP_000465	Q15672	TWST1_HUMAN	twist	123	Helix-loop-helix motif.				aortic valve morphogenesis|cellular response to hypoxia|embryonic camera-type eye formation|embryonic cranial skeleton morphogenesis|eyelid development in camera-type eye|muscle organ development|negative regulation of DNA damage response, signal transduction by p53 class mediator|negative regulation of histone phosphorylation|negative regulation of osteoblast differentiation|negative regulation of phosphatidylinositol 3-kinase cascade|negative regulation of transcription from RNA polymerase II promoter|positive regulation of angiogenesis|positive regulation of cell motility|positive regulation of epithelial to mesenchymal transition|positive regulation of fatty acid beta-oxidation|positive regulation of monocyte chemotactic protein-1 production|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription regulatory region DNA binding|positive regulation of tumor necrosis factor production|regulation of bone mineralization	nucleus	bHLH transcription factor binding|E-box binding|sequence-specific DNA binding RNA polymerase II transcription factor activity				0						CCTCGTTCAGCGACTGGGTGC	0.572000									Saethre-Chotzen_syndrome			
CAMK2B	816	broad.mit.edu	37	7	44259846	44259846	+	Missense_Mutation	SNP	G	G	A			TCGA-HU-A4G3-01A-11D-A24D-08	TCGA-HU-A4G3-10A-01D-A24F-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d83776d-2358-427a-bc55-0ae429559d41	bbf11eb7-0258-4973-be54-d8dd4e11baf1	g.chr7:44259846G>A	uc003tkq.2	-	23	2026	c.1816C>T	c.(1816-1818)CAC>TAC	p.H606Y	CAMK2B_uc003tkp.2_Missense_Mutation_p.H482Y|CAMK2B_uc003tkx.2_Missense_Mutation_p.H442Y|CAMK2B_uc010kyd.2_RNA|CAMK2B_uc003tkr.2_Missense_Mutation_p.H458Y|CAMK2B_uc003tks.2_Missense_Mutation_p.H457Y|CAMK2B_uc003tku.2_Missense_Mutation_p.H443Y|CAMK2B_uc003tkv.2_Missense_Mutation_p.H419Y|CAMK2B_uc003tkt.2_Missense_Mutation_p.H432Y|CAMK2B_uc003tkw.2_Missense_Mutation_p.H389Y|CAMK2B_uc010kyc.2_Missense_Mutation_p.H482Y|CAMK2B_uc003tkn.2_Missense_Mutation_p.H239Y	NM_001220	NP_001211	Q13554	KCC2B_HUMAN	calcium/calmodulin-dependent protein kinase II	606					interferon-gamma-mediated signaling pathway|synaptic transmission	cytosol|endocytic vesicle membrane|nucleoplasm|plasma membrane	ATP binding|calmodulin binding|calmodulin-dependent protein kinase activity			large_intestine(1)|ovary(1)	2						ACGTGCACGTGTGGGTTCAGG	0.642000												
RABGEF1	27342	broad.mit.edu	37	7	66274183	66274183	+	Missense_Mutation	SNP	C	C	A			TCGA-HU-A4G3-01A-11D-A24D-08	TCGA-HU-A4G3-10A-01D-A24F-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d83776d-2358-427a-bc55-0ae429559d41	bbf11eb7-0258-4973-be54-d8dd4e11baf1	g.chr7:66274183C>A	uc011kee.1	+	9	1594	c.1430C>A	c.(1429-1431)CCG>CAG	p.P477Q	RABGEF1_uc003tvf.2_Missense_Mutation_p.P336Q|RABGEF1_uc003tvg.2_Missense_Mutation_p.P271Q|RABGEF1_uc010lag.2_Missense_Mutation_p.P463Q|RABGEF1_uc003tvh.2_Missense_Mutation_p.P463Q|RABGEF1_uc003tvi.2_Missense_Mutation_p.P297Q	NM_014504	NP_055319	Q9UJ41	RABX5_HUMAN	RAB guanine nucleotide exchange factor (GEF) 1	680					endocytosis|protein transport	early endosome|recycling endosome	DNA binding|protein binding|zinc ion binding			ovary(1)	1						ATTAAGCCTCCGAATCAACCG	0.403000												
ZNHIT1	10467	broad.mit.edu	37	7	100865902	100865902	+	Missense_Mutation	SNP	G	G	A			TCGA-HU-A4G3-01A-11D-A24D-08	TCGA-HU-A4G3-10A-01D-A24F-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d83776d-2358-427a-bc55-0ae429559d41	bbf11eb7-0258-4973-be54-d8dd4e11baf1	g.chr7:100865902G>A	uc003uye.2	+	2	532	c.40G>A	c.(40-42)GGG>AGG	p.G14R	ZNHIT1_uc003uyf.2_RNA	NM_006349	NP_006340	O43257	ZNHI1_HUMAN	zinc finger, HIT domain containing 1	14							metal ion binding|protein binding			large_intestine(1)	1	Lung NSC(181;0.168)|all_lung(186;0.215)					CCAGGACCCCGGGCAGCGGCG	0.677000												
AASS	10157	broad.mit.edu	37	7	121753715	121753715	+	Missense_Mutation	SNP	T	T	G			TCGA-HU-A4G3-01A-11D-A24D-08	TCGA-HU-A4G3-10A-01D-A24F-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d83776d-2358-427a-bc55-0ae429559d41	bbf11eb7-0258-4973-be54-d8dd4e11baf1	g.chr7:121753715T>G	uc003vka.2	-	9	1199	c.1103A>C	c.(1102-1104)GAG>GCG	p.E368A	AASS_uc011knu.1_RNA|AASS_uc011knv.1_RNA|AASS_uc003vkb.2_Missense_Mutation_p.E368A|AASS_uc011knw.1_Intron	NM_005763	NP_005754	Q9UDR5	AASS_HUMAN	aminoadipate-semialdehyde synthase precursor	368	Lysine-ketoglutarate reductase.				protein tetramerization	mitochondrial matrix	binding|saccharopine dehydrogenase (NAD+, L-glutamate-forming) activity|saccharopine dehydrogenase (NADP+, L-lysine-forming) activity			upper_aerodigestive_tract(1)|ovary(1)	2					L-Glutamic Acid(DB00142)|NADH(DB00157)	TGTTGTACACTCAGTCATAAA	0.378000												
PLXNA4	91584	broad.mit.edu	37	7	132193311	132193311	+	Missense_Mutation	SNP	C	C	T	rs139738239		TCGA-HU-A4G3-01A-11D-A24D-08	TCGA-HU-A4G3-10A-01D-A24F-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d83776d-2358-427a-bc55-0ae429559d41	bbf11eb7-0258-4973-be54-d8dd4e11baf1	g.chr7:132193311C>T	uc003vra.3	-	2	371	c.142G>A	c.(142-144)GCC>ACC	p.A48T	PLXNA4_uc003vrc.2_Missense_Mutation_p.A48T|PLXNA4_uc003vrb.2_Missense_Mutation_p.A48T	NM_020911	NP_065962	Q9HCM2	PLXA4_HUMAN	plexin A4 isoform 1	48	Extracellular (Potential).|Sema.					integral to membrane|intracellular|plasma membrane				ovary(1)	1						AAACCCTCGGCGGGCTCTCCT	0.587000												
CSMD1	64478	broad.mit.edu	37	8	3046522	3046522	+	Missense_Mutation	SNP	C	C	T			TCGA-HU-A4G3-01A-11D-A24D-08	TCGA-HU-A4G3-10A-01D-A24F-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d83776d-2358-427a-bc55-0ae429559d41	bbf11eb7-0258-4973-be54-d8dd4e11baf1	g.chr8:3046522C>T	uc011kwk.1	-	35	5803	c.5413G>A	c.(5413-5415)GGC>AGC	p.G1805S	CSMD1_uc011kwj.1_Missense_Mutation_p.G1197S|CSMD1_uc003wqe.2_Missense_Mutation_p.G961S|CSMD1_uc010lrg.2_5'Flank	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	1805	Extracellular (Potential).|CUB 11.					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		GTGAAATTGCCACTGCAGGGT	0.453000												
UNC5D	137970	broad.mit.edu	37	8	35588553	35588553	+	Missense_Mutation	SNP	G	G	A			TCGA-HU-A4G3-01A-11D-A24D-08	TCGA-HU-A4G3-10A-01D-A24F-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d83776d-2358-427a-bc55-0ae429559d41	bbf11eb7-0258-4973-be54-d8dd4e11baf1	g.chr8:35588553G>A	uc003xjr.1	+	11	2033	c.1705G>A	c.(1705-1707)GGT>AGT	p.G569S	UNC5D_uc003xjs.1_Missense_Mutation_p.G564S|UNC5D_uc003xju.1_Missense_Mutation_p.G145S	NM_080872	NP_543148	Q6UXZ4	UNC5D_HUMAN	unc-5 homolog D precursor	569	ZU5.|Cytoplasmic (Potential).				apoptosis|axon guidance	integral to membrane	receptor activity			upper_aerodigestive_tract(2)|ovary(2)|pancreas(1)|skin(1)	6				READ - Rectum adenocarcinoma(1;1.31e-05)|Colorectal(1;0.000723)		CATACCACACGGTGCCATCCC	0.393000												
PLEKHA2	59339	broad.mit.edu	37	8	38810163	38810163	+	Missense_Mutation	SNP	T	T	A			TCGA-HU-A4G3-01A-11D-A24D-08	TCGA-HU-A4G3-10A-01D-A24F-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d83776d-2358-427a-bc55-0ae429559d41	bbf11eb7-0258-4973-be54-d8dd4e11baf1	g.chr8:38810163T>A	uc003xmi.3	+	8	877	c.643T>A	c.(643-645)TGG>AGG	p.W215R	PLEKHA2_uc011lce.1_Missense_Mutation_p.W165R	NM_021623	NP_067636	Q9HB19	PKHA2_HUMAN	pleckstrin homology domain containing, family A	215	PH 2.				positive regulation of cell-matrix adhesion	cytoplasm|nucleus|plasma membrane|protein complex	fibronectin binding|laminin binding				0		all_lung(54;0.0413)|Lung NSC(58;0.115)|Hepatocellular(245;0.152)	LUSC - Lung squamous cell carcinoma(45;4.68e-08)|COAD - Colon adenocarcinoma(9;0.235)			GCGGAAGAGCTGGAAACGTCG	0.483000												
FLJ43860	389690	broad.mit.edu	37	8	142446139	142446139	+	Missense_Mutation	SNP	C	C	T	rs141065384	by1000genomes	TCGA-HU-A4G3-01A-11D-A24D-08	TCGA-HU-A4G3-10A-01D-A24F-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d83776d-2358-427a-bc55-0ae429559d41	bbf11eb7-0258-4973-be54-d8dd4e11baf1	g.chr8:142446139C>T	uc003ywi.2	-	28	3510	c.3429G>A	c.(3427-3429)ATG>ATA	p.M1143I	FLJ43860_uc011ljs.1_RNA|FLJ43860_uc010meu.1_RNA	NM_207414	NP_997297	Q6ZUA9	Q6ZUA9_HUMAN	hypothetical protein LOC389690	1143							binding				0	all_cancers(97;7.79e-15)|all_epithelial(106;4.52e-13)|Lung NSC(106;2.07e-05)|all_lung(105;2.89e-05)|Ovarian(258;0.0303)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0493)			CGAACAGTGCCATGGCTGCCG	0.677000												
ZFAND5	7763	broad.mit.edu	37	9	74975570	74975571	+	Missense_Mutation	DNP	TG	TG	GT			TCGA-HU-A4G3-01A-11D-A24D-08	TCGA-HU-A4G3-10A-01D-A24F-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d83776d-2358-427a-bc55-0ae429559d41	bbf11eb7-0258-4973-be54-d8dd4e11baf1	g.chr9:74975570_74975571TG>GT	uc004aiv.2	-	2	402_403	c.124_125CA>AC	c.(124-126)CAA>ACA	p.Q42T	ZFAND5_uc010mox.1_5'Flank|ZFAND5_uc010moy.1_Missense_Mutation_p.Q42T|ZFAND5_uc004aix.2_Missense_Mutation_p.Q42T|ZFAND5_uc004aiw.2_Missense_Mutation_p.Q42T|ZFAND5_uc004aiy.2_Missense_Mutation_p.Q42T	NM_006007	NP_005998	O76080	ZFAN5_HUMAN	zinc finger, AN1-type domain 5	42	A20-type.						DNA binding|zinc ion binding				0						GCCACTATTTTGCTGCCTCTGA	0.441000												
BARHL1	56751	broad.mit.edu	37	9	135458244	135458244	+	Silent	SNP	C	C	T			TCGA-HU-A4G3-01A-11D-A24D-08	TCGA-HU-A4G3-10A-01D-A24F-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d83776d-2358-427a-bc55-0ae429559d41	bbf11eb7-0258-4973-be54-d8dd4e11baf1	g.chr9:135458244C>T	uc004cbp.1	+	1	252	c.60C>T	c.(58-60)CCC>CCT	p.P20P		NM_020064	NP_064448	Q9BZE3	BARH1_HUMAN	BarH-like homeobox 1	20						nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0				OV - Ovarian serous cystadenocarcinoma(145;1.79e-06)|Epithelial(140;3.12e-05)		CGGGCAGCCCCGCCCTTCCCA	0.657000												
NAP1L3	4675	broad.mit.edu	37	X	92927365	92927365	+	Silent	SNP	G	G	A			TCGA-HU-A4G3-01A-11D-A24D-08	TCGA-HU-A4G3-10A-01D-A24F-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d83776d-2358-427a-bc55-0ae429559d41	bbf11eb7-0258-4973-be54-d8dd4e11baf1	g.chrX:92927365G>A	uc004efq.2	-	1	1244	c.939C>T	c.(937-939)GAC>GAT	p.D313D	FAM133A_uc004efr.1_5'Flank	NM_004538	NP_004529	Q99457	NP1L3_HUMAN	nucleosome assembly protein 1-like 3	313					nucleosome assembly	chromatin assembly complex				ovary(1)|skin(1)	2						TCAGCCAATAGTCAGGAATGC	0.423000												
SAGE1	55511	broad.mit.edu	37	X	134983755	134983755	+	Missense_Mutation	SNP	G	G	A			TCGA-HU-A4G3-01A-11D-A24D-08	TCGA-HU-A4G3-10A-01D-A24F-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d83776d-2358-427a-bc55-0ae429559d41	bbf11eb7-0258-4973-be54-d8dd4e11baf1	g.chrX:134983755G>A	uc004ezh.2	+	3	292	c.125G>A	c.(124-126)GGG>GAG	p.G42E	SAGE1_uc010nry.1_Missense_Mutation_p.G42E|SAGE1_uc011mvv.1_Missense_Mutation_p.G42E	NM_018666	NP_061136	Q9NXZ1	SAGE1_HUMAN	sarcoma antigen 1	42										ovary(2)|skin(1)	3	Acute lymphoblastic leukemia(192;0.000127)					GTTGCAACAGGGCATCAAAGC	0.398000												
MAGEC1	9947	broad.mit.edu	37	X	140993377	140993377	+	Missense_Mutation	SNP	T	T	C			TCGA-HU-A4G3-01A-11D-A24D-08	TCGA-HU-A4G3-10A-01D-A24F-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d83776d-2358-427a-bc55-0ae429559d41	bbf11eb7-0258-4973-be54-d8dd4e11baf1	g.chrX:140993377T>C	uc004fbt.2	+	4	473	c.187T>C	c.(187-189)TCC>CCC	p.S63P	MAGEC1_uc010nsl.1_Intron	NM_005462	NP_005453	O60732	MAGC1_HUMAN	melanoma antigen family C, 1	63							protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					GGGGGAGGACTCCTCGGATCC	0.597000										HNSCC(15;0.026)		
OTOF	9381	broad.mit.edu	37	2	26702456	26702465	+	Frame_Shift_Del	DEL	CCGGCTCCTT	CCGGCTCCTT	-	rs145589784	by1000genomes	TCGA-HU-A4G3-01A-11D-A24D-08	TCGA-HU-A4G3-10A-01D-A24F-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d83776d-2358-427a-bc55-0ae429559d41	bbf11eb7-0258-4973-be54-d8dd4e11baf1	g.chr2:26702455_26702464CCCGGCTCCTT>C	uc002rhk.3	-	16	2097_2106	c.1970_1979AAGGAGCCGGG>G	c.(1969-1980)aaggagccggggfs	p.K657fs	OTOF_uc002rhh.3_5'Flank|OTOF_uc002rhi.3_5'Flank|OTOF_uc002rhj.3_5'Flank	NM_194248	NP_919224	Q9HC10	OTOF_HUMAN	Homo sapiens otoferlin (OTOF), transcript variant 1, mRNA.	657					cellular membrane fusion|sensory perception of sound|synaptic vesicle exocytosis	basolateral plasma membrane|cell junction|cytosol|endoplasmic reticulum membrane|integral to membrane|membrane fraction|synaptic vesicle membrane	calcium ion binding	p.E658Q(2)		NS(1)|autonomic_ganglia(1)|breast(9)|central_nervous_system(4)|endometrium(9)|haematopoietic_and_lymphoid_tissue(1)|kidney(5)|large_intestine(14)|lung(35)|ovary(8)|pancreas(1)|prostate(5)|skin(5)|stomach(4)|upper_aerodigestive_tract(3)|urinary_tract(1)	106	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					TTCCTCATCCCCCGGCTCCTTCCGGGGCCG	0.633												
MRPS28	28957	broad.mit.edu	37	8	80942415	80942417	+	In_Frame_Del	DEL	GAA	GAA	-			TCGA-HU-A4G3-01A-11D-A24D-08	TCGA-HU-A4G3-10A-01D-A24F-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d83776d-2358-427a-bc55-0ae429559d41	bbf11eb7-0258-4973-be54-d8dd4e11baf1	g.chr8:80942414_80942416TGAA>T	uc003ybp.3	-	0	91_93	c.68_70TTCA>A	c.(67-72)ttcagg>tAgg	p.23_24FR>*	TPD52_uc010lzr.3_Intron	NM_014018	NP_054737	Q9Y2Q9	RT28_HUMAN	Homo sapiens mitochondrial ribosomal protein S28 (MRPS28), nuclear gene encoding mitochondrial protein, mRNA.	23						mitochondrial small ribosomal subunit				endometrium(1)|large_intestine(1)|lung(2)|skin(1)	5	Lung NSC(7;1.86e-06)|all_lung(9;6.91e-06)		BRCA - Breast invasive adenocarcinoma(6;0.00769)|Epithelial(68;0.0208)|all cancers(69;0.0805)			CGAAAGGGCCTGAAGAAGAGAAA	0.586												
C11orf82	220042	broad.mit.edu	37	11	82642855	82642863	+	In_Frame_Del	DEL	GCACTAGTG	GCACTAGTG	-			TCGA-HU-A4G3-01A-11D-A24D-08	TCGA-HU-A4G3-10A-01D-A24F-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d83776d-2358-427a-bc55-0ae429559d41	bbf11eb7-0258-4973-be54-d8dd4e11baf1	g.chr11:82642854_82642862AGCACTAGTG>A	uc001ozt.3	+	5	718_726	c.474_482AGCACTAGTG>A	c.(472-483)aaagcactagtg>aaAg	p.ALV159del	C11orf82_uc010rsr.2_5'UTR|C11orf82_uc010rss.2_5'UTR|C11orf82_uc009yvd.2_In_Frame_Del_p.ALV159del	NM_145018	NP_659455	Q8IXT1	NOXIN_HUMAN	Homo sapiens chromosome 11 open reading frame 82 (C11orf82), mRNA.	159					apoptosis|cell cycle arrest	cytoplasm|nucleus				haematopoietic_and_lymphoid_tissue(1)|kidney(2)|large_intestine(7)|lung(17)|ovary(3)|prostate(1)|skin(1)|urinary_tract(1)	33						GAAAAGCCAAAGCACTAGTGGCTTGCCAG	0.407												
DISP2	85455	broad.mit.edu	37	15	40660756	40660757	+	Frame_Shift_Del	DEL	CT	CT	-			TCGA-HU-A4G3-01A-11D-A24D-08	TCGA-HU-A4G3-10A-01D-A24F-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d83776d-2358-427a-bc55-0ae429559d41	bbf11eb7-0258-4973-be54-d8dd4e11baf1	g.chr15:40660755_40660756ACT>A	uc001zlk.1	+	7	2531_2532	c.2442_2443ACT>A	c.(2440-2445)gcactcfs	p.A814fs		NM_033510	NP_277045	A7MBM2	DISP2_HUMAN	Homo sapiens dispatched homolog 2 (Drosophila) (DISP2), mRNA.	814					smoothened signaling pathway	integral to membrane				breast(1)|endometrium(4)|kidney(2)|large_intestine(7)|lung(12)|ovary(4)	30		all_cancers(109;9.35e-19)|all_epithelial(112;1.18e-15)|Lung NSC(122;2.45e-11)|all_lung(180;6.47e-10)|Melanoma(134;0.0574)|Ovarian(310;0.0822)|Colorectal(260;0.117)		GBM - Glioblastoma multiforme(113;3.39e-06)|Colorectal(105;0.0114)|READ - Rectum adenocarcinoma(2;0.0649)|BRCA - Breast invasive adenocarcinoma(123;0.0798)|Lung(196;0.15)|LUAD - Lung adenocarcinoma(183;0.247)		GGCTGCTGGCACTCTGTCACCG	0.668												
SEMA6D	80031	broad.mit.edu	37	15	48056944	48056945	+	Frame_Shift_Ins	INS	-	-	T			TCGA-HU-A4G3-01A-11D-A24D-08	TCGA-HU-A4G3-10A-01D-A24F-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5d83776d-2358-427a-bc55-0ae429559d41	bbf11eb7-0258-4973-be54-d8dd4e11baf1	g.chr15:48056943_48056944C>CT	uc010bek.3	+	11	1566_1567	c.1206_1207C>CT	c.(1204-1209)gccgttfs	p.A402fs	SEMA6D_uc001zvw.3_Frame_Shift_Ins_p.A402fs|SEMA6D_uc001zvx.1_Frame_Shift_Ins_p.A402fs|SEMA6D_uc001zvy.3_Frame_Shift_Ins_p.A402fs|SEMA6D_uc001zvz.3_Frame_Shift_Ins_p.A402fs|SEMA6D_uc001zwa.3_Frame_Shift_Ins_p.A402fs|SEMA6D_uc001zwb.3_Frame_Shift_Ins_p.A402fs|SEMA6D_uc001zwc.3_Frame_Shift_Ins_p.A402fs	NM_153618	NP_705871	Q8NFY4	SEM6D_HUMAN	Homo sapiens sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D (SEMA6D), transcript variant 4, mRNA.	402	Sema.				axon guidance	cytoplasm|integral to membrane|plasma membrane	receptor activity			biliary_tract(1)|breast(4)|endometrium(4)|kidney(5)|large_intestine(10)|lung(42)|prostate(1)|skin(3)|stomach(1)|upper_aerodigestive_tract(2)|urinary_tract(4)	77		all_lung(180;0.000635)|Myeloproliferative disorder(241;0.116)|Melanoma(134;0.18)		all cancers(107;1.2e-11)|GBM - Glioblastoma multiforme(94;1.2e-06)		TGGACTCTGCCGTTCCACCCAT	0.495												
