Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
ABCA11P	0	genome.wustl.edu	37	4	420664	420664	+	RNA	SNP	G	G	T			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	4	420664	420664	G	T	SNP	ABCA11P	ENST00000451020	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.979	-	-	-	no_errors	ABCA11P	HGNC	ENSG00000251595	254	0	0.00	453	57	11.18	-	-	-
ACBD5	0	genome.wustl.edu	37	10	27520705	27520705	+	Missense_Mutation	SNP	A	A	C			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	10	27520705	27520705	A	C	SNP	ACBD5	ENST00000375888	human	ensembl	69_37n	-1	known	missense	c.341	p.M114R	1.000	pfam_Acyl-CoA-binding_protein,superfamily_Acyl-CoA-binding_protein,pirsf_M-assoc_diazepam-bd-inh,prints_Acyl-CoA-binding_protein	pfam_Acyl-CoA-binding_protein,superfamily_Acyl-CoA-binding_protein,pirsf_M-assoc_diazepam-bd-inh,prints_Acyl-CoA-binding_protein	-	no_errors	ACBD5	HGNC	ENSG00000107897	509	0	0.00	59	61	50.83	-	-	-
AHNAK	0	genome.wustl.edu	37	11	62297801	62297801	+	Missense_Mutation	SNP	T	T	C			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	11	62297801	62297801	T	C	SNP	AHNAK	ENST00000378024	human	ensembl	69_37n	-1	known	missense	c.4088	p.K1363R	1.000	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK	HGNC	ENSG00000124942	680	0	0.00	477	308	39.24	-	-	-
ALMS1P	0	genome.wustl.edu	37	2	73898264	73898264	+	RNA	SNP	G	G	C			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	2	73898264	73898264	G	C	SNP	ALMS1P	ENST00000450720	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.924	-	-	-	no_errors	ALMS1P	HGNC	ENSG00000163016	246	0	0.00	131	76	36.71	-	-	-
ANKRD36B	0	genome.wustl.edu	37	2	98165911	98165911	+	RNA	SNP	T	T	C			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	2	98165911	98165911	T	C	SNP	ANKRD36B	ENST00000443455	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	ANKRD36B	HGNC	ENSG00000196912	123	0	0.00	258	85	24.71	-	-	-
ANKRD42	0	genome.wustl.edu	37	11	82938872	82938872	+	Missense_Mutation	SNP	A	A	T			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	11	82938872	82938872	A	T	SNP	ANKRD42	ENST00000393392	human	ensembl	69_37n	+1	known	missense	c.787	p.I263F	0.999	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD42	HGNC	ENSG00000137494	260	0	0.00	122	31	20.26	-	-	-
ARHGAP42	0	genome.wustl.edu	37	11	100845328	100845328	+	Missense_Mutation	SNP	C	C	T			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	11	100845328	100845328	C	T	SNP	ARHGAP42	ENST00000298815	human	ensembl	69_37n	+1	known	missense	c.1849	p.P617S	0.998	NULL	pfam_RhoGAP_dom,pfam_SH3_domain,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,smart_Pleckstrin_homology,smart_RhoGAP_dom,smart_SH3_domain,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_RhoGAP_dom	-	no_errors	ARHGAP42	HGNC	ENSG00000165895	242	0	0.00	134	19	12.42	-	-	-
ARL11	0	genome.wustl.edu	37	13	50204651	50204651	+	Missense_Mutation	SNP	C	C	T			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	13	50204651	50204651	C	T	SNP	ARL11	ENST00000282026	human	ensembl	69_37n	+1	known	missense	c.68	p.A23V	0.995	pfam_Small_GTPase_ARF/SAR,pfam_SRP_receptor_beta_su,pfam_Small_GTPase,pfam_Gtr1_RagA,pfam_MIRO-like,smart_Small_GTPase_SAR1,smart_Small_GTPase_ARF,prints_Small_GTPase_ARF/SAR,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase_ARF/SAR,pfam_SRP_receptor_beta_su,pfam_Small_GTPase,pfam_Gtr1_RagA,pfam_MIRO-like,smart_Small_GTPase_SAR1,smart_Small_GTPase_ARF,prints_Small_GTPase_ARF/SAR,tigrfam_Small_GTP-bd_dom	-	no_errors	ARL11	HGNC	ENSG00000152213	83	0	0.00	14	95	86.36	-	-	-
ASB10	0	genome.wustl.edu	37	7	150878405	150878405	+	Missense_Mutation	SNP	T	T	C			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	7	150878405	150878405	T	C	SNP	ASB10	ENST00000422024	human	ensembl	69_37n	-1	known	missense	c.860	p.D287G	0.663	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_SOCS_C,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_SOCS_C,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SOCS_C	-	no_errors	ASB10	HGNC	ENSG00000146926	81	0	0.00	32	8	20.00	-	-	-
ASMTL-AS1	0	genome.wustl.edu	37	X	1531838	1531838	+	RNA	SNP	A	A	G			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	X	1531838	1531838	A	G	SNP	ASMTL-AS1	ENST00000420411	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ASMTL-AS1	HGNC	ENSG00000236017	43	0	0.00	176	26	12.87	-	-	-
ATG2A	0	genome.wustl.edu	37	11	64673972	64673972	+	Missense_Mutation	SNP	A	A	C			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	11	64673972	64673972	A	C	SNP	ATG2A	ENST00000421419	human	ensembl	69_37n	-1	known	missense	c.3017	p.L1006R	1.000	NULL	pfam_Autophagy-rel_C	-	no_errors	ATG2A	HGNC	ENSG00000110046	88	0	0.00	56	8	12.50	-	-	-
ATPAF1-AS1	0	genome.wustl.edu	37	1	47139124	47139124	+	Missense_Mutation	SNP	T	T	C			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	1	47139124	47139124	T	C	SNP	ATPAF1-AS1	ENST00000569393	human	ensembl	69_37n	+1	known	missense	c.779	p.L260P	0.513	NULL	NULL	-	no_errors	ATPAF1-AS1	HGNC	ENSG00000186118	118	0	0.00	159	18	10.00	-	-	-
BOD1	0	genome.wustl.edu	37	5	173036257	173036257	+	Missense_Mutation	SNP	A	A	G			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	5	173036257	173036257	A	G	SNP	BOD1	ENST00000477985	human	ensembl	69_37n	-1	putative	missense	c.340	p.S114P	0.995	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	BOD1	HGNC	ENSG00000145919	210	1	0.47	46	8	14.55	-	-	-
BRCA1	0	genome.wustl.edu	37	17	41245985	41245985	+	Missense_Mutation	SNP	T	T	C			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	17	41245985	41245985	T	C	SNP	BRCA1	ENST00000412061	human	ensembl	69_37n	-1	known	missense	c.914	p.Q305R	0.567	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	BRCA1	HGNC	ENSG00000012048	96	0	0.00	41	131	76.16	-	-	-
BUB1	0	genome.wustl.edu	37	2	111419365	111419365	+	Silent	SNP	C	C	T			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	2	111419365	111419365	C	T	SNP	BUB1	ENST00000302759	human	ensembl	69_37n	-1	known	silent	c.1011	p.A337	0.000	NULL	pfam_Mad3_BUB1_I,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Mad3_BUB1_I,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	BUB1	HGNC	ENSG00000169679	273	1	0.36	60	38	38.78	-	-	-
C16orf59	0	genome.wustl.edu	37	16	2512471	2512471	+	Missense_Mutation	SNP	G	G	A			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	16	2512471	2512471	G	A	SNP	C16orf59	ENST00000361837	human	ensembl	69_37n	+1	known	missense	c.806	p.R269H	0.000	NULL	NULL	-	no_errors	C16orf59	HGNC	ENSG00000162062	82	0	0.00	43	10	18.87	-	-	-
C1QTNF9	0	genome.wustl.edu	37	13	24895393	24895393	+	Silent	SNP	A	A	G			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	13	24895393	24895393	A	G	SNP	C1QTNF9	ENST00000332018	human	ensembl	69_37n	+1	known	silent	c.489	p.K163	1.000	pfam_Collagen	pfam_C1q,pfam_Collagen,superfamily_Tumour_necrosis_fac-like,smart_C1q,pfscan_C1q,prints_C1q	-	no_errors	C1QTNF9	HGNC	ENSG00000240654	16	0	0.00	0	44	100.00	-	-	-
CALHM3	0	genome.wustl.edu	37	10	105236242	105236242	+	Missense_Mutation	SNP	G	G	A			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	10	105236242	105236242	G	A	SNP	CALHM3	ENST00000369783	human	ensembl	69_37n	-1	known	missense	c.352	p.L118F	1.000	NULL	NULL	-	no_errors	CALHM3	HGNC	ENSG00000183128	115	0	0.00	61	7	10.29	-	-	-
CAMTA2	0	genome.wustl.edu	37	17	4883751	4883751	+	Missense_Mutation	SNP	G	G	A			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	17	4883751	4883751	G	A	SNP	CAMTA2	ENST00000414043	human	ensembl	69_37n	-1	known	missense	c.935	p.S312F	1.000	NULL	pfam_CG-1_dom,pfam_IPT_TIG_rcpt,pfam_IQ_motif_EF-hand-BS,superfamily_Ig_E-set,superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt-contain_dom,pfscan_IQ_motif_EF-hand-BS	-	no_errors	CAMTA2	HGNC	ENSG00000108509	129	0	0.00	29	57	66.28	-	-	-
CECR2	0	genome.wustl.edu	37	22	18022211	18022211	+	Silent	SNP	C	C	T			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	22	18022211	18022211	C	T	SNP	CECR2	ENST00000400573	human	ensembl	69_37n	+1	novel	silent	c.2313	p.H771	0.000	NULL	pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	CECR2	HGNC	ENSG00000099954	87	0	0.00	103	79	43.41	-	-	-
CES1P1	0	genome.wustl.edu	37	16	55794514	55794514	+	RNA	SNP	C	C	T			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	16	55794514	55794514	C	T	SNP	CES1P1	ENST00000571348	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CES1P1	HGNC	ENSG00000228695	83	0	0.00	33	4	10.81	-	-	-
CHRNB4	0	genome.wustl.edu	37	15	78921983	78921983	+	Missense_Mutation	SNP	C	C	T			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	15	78921983	78921983	C	T	SNP	CHRNB4	ENST00000261751	human	ensembl	69_37n	-1	known	missense	c.664	p.V222M	0.997	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,tigrfam_Neur_channel	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,prints_Nicotinic_acetylcholine_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	CHRNB4	HGNC	ENSG00000117971	873	0	0.00	137	86	38.57	-	-	-
CLEC18B	0	genome.wustl.edu	37	16	74446051	74446051	+	Splice_Site	SNP	C	C	T			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	16	74446051	74446051	C	T	SNP	CLEC18B	ENST00000339953	human	ensembl	69_37n	-1	known	splice_site	c.877+1	e7+1	1.000	-	-	-	no_errors	CLEC18B	HGNC	ENSG00000140839	17	0	0.00	27	8	22.86	-	-	-
CLUAP1	0	genome.wustl.edu	37	16	3558440	3558440	+	Missense_Mutation	SNP	A	A	G			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	16	3558440	3558440	A	G	SNP	CLUAP1	ENST00000576634	human	ensembl	69_37n	+1	known	missense	c.371	p.N124S	0.990	pfam_Clusterin-associated_protein-1	pfam_Clusterin-associated_protein-1,superfamily_CH-domain	-	no_errors	CLUAP1	HGNC	ENSG00000103351	332	1	0.30	83	14	14.43	-	-	-
COL20A1	0	genome.wustl.edu	37	20	61956698	61956698	+	Silent	SNP	T	T	C			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	20	61956698	61956698	T	C	SNP	COL20A1	ENST00000326996	human	ensembl	69_37n	+1	known	silent	c.3372	p.R1124	0.000	pfam_Collagen	pfam_Fibronectin_type3,pfam_VWF_A,pfam_Collagen,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_VWF_A,smart_Laminin_G,pfscan_Fibronectin_type3,pfscan_VWF_A	-	no_errors	COL20A1	HGNC	ENSG00000101203	82	0	0.00	42	7	14.00	-	-	-
COL21A1	0	genome.wustl.edu	37	6	55940289	55940289	+	Silent	SNP	G	G	T			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	6	55940289	55940289	G	T	SNP	COL21A1	ENST00000244728	human	ensembl	69_37n	-1	known	silent	c.1899	p.A633	0.896	NULL	pfam_Collagen,pfam_VWF_A,superfamily_ConA-like_lec_gl,smart_VWF_A,smart_Laminin_G,pfscan_VWF_A	-	no_errors	COL21A1	HGNC	ENSG00000124749	168	0	0.00	85	32	27.35	-	-	-
COMT	0	genome.wustl.edu	37	22	19951897	19951897	+	Missense_Mutation	SNP	G	G	C			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	22	19951897	19951897	G	C	SNP	COMT	ENST00000403184	human	ensembl	69_37n	+1	putative	missense	c.690	p.K230N	0.000	pirsf_Catechol_O-MeTrfase_euk	pfam_O-MeTrfase_3,pirsf_Catechol_O-MeTrfase_euk	-	no_errors	COMT	HGNC	ENSG00000093010	51	0	0.00	45	7	13.46	-	-	-
COPE	0	genome.wustl.edu	37	19	19030117	19030117	+	Missense_Mutation	SNP	C	C	G			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	19	19030117	19030117	C	G	SNP	COPE	ENST00000262812	human	ensembl	69_37n	-1	known	missense	c.41	p.G14A	0.999	pirsf_Coatomer_esu	pfam_Coatomer_esu,pirsf_Coatomer_esu	-	no_errors	COPE	HGNC	ENSG00000105669	74	0	0.00	61	20	24.69	-	-	-
CSAG4	0	genome.wustl.edu	37	X	151896334	151896334	+	RNA	SNP	G	G	A			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	X	151896334	151896334	G	A	SNP	CSAG4	ENST00000361201	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CSAG4	HGNC	ENSG00000242599	561	1	0.18	222	36	13.95	-	-	-
CTSO	0	genome.wustl.edu	37	4	156863572	156863572	+	Missense_Mutation	SNP	C	C	A			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	4	156863572	156863572	C	A	SNP	CTSO	ENST00000433477	human	ensembl	69_37n	-1	known	missense	c.281	p.R94I	0.050	NULL	pfam_Peptidase_C1A_C,smart_Peptidase_C1A_C,prints_Peptidase_C1A_C	-	no_errors	CTSO	HGNC	ENSG00000256043	278	0	0.00	79	10	11.24	-	-	-
CXXC5	0	genome.wustl.edu	37	5	139060486	139060486	+	Silent	SNP	G	G	A			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	5	139060486	139060486	G	A	SNP	CXXC5	ENST00000302517	human	ensembl	69_37n	+1	known	silent	c.378	p.A126	0.097	NULL	pfam_Znf_CXXC,pfscan_Znf_CXXC	-	no_errors	CXXC5	HGNC	ENSG00000171604	76	0	0.00	26	9	25.71	-	-	-
CYP2D7P1	0	genome.wustl.edu	37	22	42538826	42538826	+	Missense_Mutation	SNP	C	C	G			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	22	42538826	42538826	C	G	SNP	CYP2D7P1	ENST00000433992	human	ensembl	69_37n	-1	known	missense	c.409	p.V137L	0.360	NULL	NULL	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region	CYP2D7P1	HGNC	ENSG00000205702	111	0	0.00	80	10	11.11	-	-	-
DDHD1	0	genome.wustl.edu	37	14	53525231	53525231	+	Missense_Mutation	SNP	G	G	C			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	14	53525231	53525231	G	C	SNP	DDHD1	ENST00000323669	human	ensembl	69_37n	-1	known	missense	c.1956	p.N652K	1.000	pfam_DDHD,pfscan_DDHD	pfam_DDHD,pfscan_DDHD	-	no_errors	DDHD1	HGNC	ENSG00000100523	115	0	0.00	110	14	11.29	-	-	-
DDX11	0	genome.wustl.edu	37	12	31254897	31254897	+	Missense_Mutation	SNP	G	G	A			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	12	31254897	31254897	G	A	SNP	DDX11	ENST00000407793	human	ensembl	69_37n	+1	known	missense	c.2183	p.R728H	0.998	smart_ATP-dep_Helicase_C,tigrfam_DNA_helicase_DNA-repair_Rad3	pfam_DEAD_2,smart_Helicase-like_DEXD_c2,smart_ATP-dep_Helicase_C,pfscan_Helic_SF1/SF2_ATP-bd_DinG/Rad3,tigrfam_DNA_helicase_DNA-repair_Rad3	-	no_errors	DDX11	HGNC	ENSG00000013573	477	2	0.42	121	19	13.57	-	-	-
DHDDS	0	genome.wustl.edu	37	1	26784300	26784300	+	Missense_Mutation	SNP	G	G	C			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	1	26784300	26784300	G	C	SNP	DHDDS	ENST00000416052	human	ensembl	69_37n	+1	putative	missense	c.190	p.A64P	1.000	pfam_UPP_synth-like,superfamily_UPP_synth-like,tigrfam_UPP_synth-like	pfam_UPP_synth-like,superfamily_UPP_synth-like,tigrfam_UPP_synth-like	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	DHDDS	HGNC	ENSG00000117682	652	0	0.00	102	18	15.00	-	-	-
DNAH14	0	genome.wustl.edu	37	1	225380398	225380398	+	Missense_Mutation	SNP	A	A	G			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	1	225380398	225380398	A	G	SNP	DNAH14	ENST00000430092	human	ensembl	69_37n	+1	known	missense	c.5605	p.I1869V	0.025	smart_AAA+_ATPase	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,superfamily_Tautomerase,smart_AAA+_ATPase	-	no_errors	DNAH14	HGNC	ENSG00000185842	27	0	0.00	62	8	11.43	-	-	-
DNM1P46	0	genome.wustl.edu	37	15	100333090	100333090	+	RNA	SNP	T	T	C			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	15	100333090	100333090	T	C	SNP	DNM1P46	ENST00000341853	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	DNM1P46	HGNC	ENSG00000182397	20	0	0.00	486	76	13.52	-	-	-
DTX2	0	genome.wustl.edu	37	7	76121509	76121509	+	Missense_Mutation	SNP	C	C	T			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	7	76121509	76121509	C	T	SNP	DTX2	ENST00000435251	human	ensembl	69_37n	+1	known	missense	c.40	p.R14C	0.015	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	DTX2	Clone_based_vega_gene	ENSG00000091073	72	0	0.00	19	7	26.92	-	-	-
ENSG00000228157	0	genome.wustl.edu	37	17	18997106	18997106	+	Silent	SNP	G	G	T			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	17	18997106	18997106	G	T	SNP	ENSG00000228157	ENST00000428928	human	ensembl	69_37n	+1	known	silent	c.444	p.G148	0.051	NULL	NULL	-	no_errors	AC007952.5	Clone_based_vega_gene	ENSG00000228157	49	0	0.00	33	5	13.16	-	-	-
FABP5P3	0	genome.wustl.edu	37	7	152139854	152139854	+	RNA	SNP	A	A	C			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	7	152139854	152139854	A	C	SNP	FABP5P3	ENST00000477993	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.998	-	-	-	no_errors	FABP5P3	HGNC	ENSG00000241735	27	0	0.00	500	88	14.97	-	-	-
FAM157C	0	genome.wustl.edu	37	16	90173048	90173048	+	RNA	SNP	C	C	T			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	16	90173048	90173048	C	T	SNP	FAM157C	ENST00000563357	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.016	-	-	-	no_errors	FAM157C	HGNC	ENSG00000260528	56	0	0.00	109	14	11.38	-	-	-
FAM178B	0	genome.wustl.edu	37	2	97613616	97613616	+	Silent	SNP	T	T	C			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	2	97613616	97613616	T	C	SNP	FAM178B	ENST00000417561	human	ensembl	69_37n	-1	known	silent	c.1461	p.T487	0.758	NULL	NULL	-	no_errors	FAM178B	HGNC	ENSG00000168754	145	0	0.00	120	24	16.67	-	-	-
FAM178B	0	genome.wustl.edu	37	2	97617140	97617140	+	Silent	SNP	T	T	C			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	2	97617140	97617140	T	C	SNP	FAM178B	ENST00000417561	human	ensembl	69_37n	-1	known	silent	c.1413	p.V471	0.144	NULL	NULL	-	no_errors	FAM178B	HGNC	ENSG00000168754	289	0	0.00	72	11	13.25	-	-	-
FAM86B1	0	genome.wustl.edu	37	8	12041205	12041205	+	Frame_Shift_Del	DEL	C	C	-			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	8	12041205	12041205	C	-	DEL	FAM86B1	ENST00000431227	human	ensembl	69_37n	-1	known	frame_shift_del	c.903	p.I302fs	0.089	NULL	pfam_Nicotinamide_N-MeTfrase-like	-	no_errors	FAM86B1	HGNC	ENSG00000186523	108	0	0.00	26	3	10.00	-	-	-
FAM86B1	0	genome.wustl.edu	37	8	12042939	12042939	+	Missense_Mutation	SNP	C	C	T			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	8	12042939	12042939	C	T	SNP	FAM86B1	ENST00000431227	human	ensembl	69_37n	-1	known	missense	c.838	p.V280M	0.784	pfam_Nicotinamide_N-MeTfrase-like	pfam_Nicotinamide_N-MeTfrase-like	-	no_errors	FAM86B1	HGNC	ENSG00000186523	91	0	0.00	61	10	13.89	-	-	-
FAM86B2	0	genome.wustl.edu	37	8	12286498	12286498	+	Nonsense_Mutation	SNP	G	G	C			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	8	12286498	12286498	G	C	SNP	FAM86B2	ENST00000393715	human	ensembl	69_37n	-1	known	nonsense	c.50	p.S17*	0.829	NULL	NULL	-	no_errors	FAM86B2	HGNC	ENSG00000145002	22	0	0.00	8	8	50.00	-	-	-
FAM86DP	0	genome.wustl.edu	37	3	75471777	75471777	+	RNA	SNP	G	G	A			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	3	75471777	75471777	G	A	SNP	FAM86DP	ENST00000459803	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	FAM86DP	HGNC	ENSG00000244026	25	0	0.00	410	49	10.65	-	-	-
FAT3	0	genome.wustl.edu	37	11	92533189	92533189	+	Missense_Mutation	SNP	T	T	A			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	11	92533189	92533189	T	A	SNP	FAT3	ENST00000298047	human	ensembl	69_37n	+1	known	missense	c.7010	p.F2337Y	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl,superfamily_Cadherin-like,smart_Cadherin,smart_EGF-like,smart_Laminin_G,smart_EGF-like_Ca-bd,prints_Cadherin,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin	-	no_errors	FAT3	HGNC	ENSG00000165323	278	0	0.00	127	93	42.08	-	-	-
FLJ10661	0	genome.wustl.edu	37	8	8088411	8088411	+	RNA	SNP	A	A	G			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	8	8088411	8088411	A	G	SNP	FLJ10661	ENST00000522601	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.976	-	-	-	no_errors	RP11-556O5.3	Clone_based_vega_gene	ENSG00000173295	8	0	0.00	23	20	46.51	-	-	-
FLJ38723	0	genome.wustl.edu	37	15	62539304	62539304	+	RNA	SNP	G	G	A			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	15	62539304	62539304	G	A	SNP	FLJ38723	ENST00000570077	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	RP11-299H22.3	Clone_based_vega_gene	ENSG00000166104	194	0	0.00	120	15	11.03	-	-	-
GDPD5	0	genome.wustl.edu	37	11	75160132	75160132	+	Missense_Mutation	SNP	C	C	T			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	11	75160132	75160132	C	T	SNP	GDPD5	ENST00000336898	human	ensembl	69_37n	-1	known	missense	c.604	p.V202M	0.608	NULL	pfam_GlyceroP-diester-Pdiesterase,superfamily_PLC-like_Pdiesterase_TIM-brl	-	no_errors	GDPD5	HGNC	ENSG00000158555	361	0	0.00	100	18	15.13	-	-	-
GLIPR1	0	genome.wustl.edu	37	12	75874811	75874811	+	Missense_Mutation	SNP	A	A	C			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	12	75874811	75874811	A	C	SNP	GLIPR1	ENST00000266659	human	ensembl	69_37n	+1	known	missense	c.151	p.T51P	0.037	pfam_CAP_domain,superfamily_CAP_domain,smart_Allrgn_V5/Tpx1	pfam_CAP_domain,superfamily_CAP_domain,smart_Allrgn_V5/Tpx1,prints_Allrgn_V5/Tpx1,prints_V5_allergen	-	no_errors	GLIPR1	HGNC	ENSG00000139278	202	2	0.98	37	24	39.34	-	-	-
GMEB1	0	genome.wustl.edu	37	1	29016663	29016663	+	Missense_Mutation	SNP	A	A	T			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	1	29016663	29016663	A	T	SNP	GMEB1	ENST00000294409	human	ensembl	69_37n	+1	known	missense	c.206	p.E69V	1.000	NULL	pfam_SAND_dom,superfamily_SAND_dom-like,smart_SAND_dom,pfscan_SAND_dom	-	no_errors	GMEB1	HGNC	ENSG00000162419	131	0	0.00	58	42	42.00	-	-	-
GOLGA8G	0	genome.wustl.edu	37	15	28769168	28769168	+	Missense_Mutation	SNP	C	C	T			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	15	28769168	28769168	C	T	SNP	GOLGA8G	ENST00000433304	human	ensembl	69_37n	-1	known	missense	c.674	p.G225E	0.869	NULL	NULL	-	no_errors	GOLGA8G	HGNC	ENSG00000183629	81	0	0.00	11	13	54.17	-	-	-
GOLGA8IP	0	genome.wustl.edu	37	15	23259512	23259512	+	Missense_Mutation	SNP	T	T	A			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	15	23259512	23259512	T	A	SNP	GOLGA8IP	ENST00000450802	human	ensembl	69_37n	+1	known	missense	c.365	p.I122N	0.002	NULL	NULL	-	no_errors	GOLGA8IP	HGNC	ENSG00000153666	10	0	0.00	0	25	100.00	-	-	-
GPR42	0	genome.wustl.edu	37	19	35863141	35863141	+	Silent	SNP	T	T	C			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	19	35863141	35863141	T	C	SNP	GPR42	ENST00000454971	human	ensembl	69_37n	+1	known	silent	c.880	p.L294	0.051	NULL	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_GPR40-rel_recept	-	no_errors	GPR42	HGNC	ENSG00000126251	28	0	0.00	1	7	87.50	-	-	-
GTF3C1	0	genome.wustl.edu	37	16	27480677	27480686	+	Frame_Shift_Del	DEL	ACCACAATGC	ACCACAATGC	-			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	ACCACAATGC	ACCACAATGC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	16	27480677	27480686	ACCACAATGC	-	DEL	GTF3C1	ENST00000356183	human	ensembl	69_37n	-1	known	frame_shift_del	c.5009_5000	p.S1667fs	1.000:1.000:1.000:1.000:1.000:0.905:1.000:1.000:1.000:1.000	NULL	pfam_TFIIIC_Bblock-bd	-	no_errors	GTF3C1	HGNC	ENSG00000077235	314	0	0.00	27	8	21.62	-	-	-
GUSBP1	0	genome.wustl.edu	37	5	21497300	21497300	+	RNA	SNP	C	C	T			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	5	21497300	21497300	C	T	SNP	GUSBP1	ENST00000508260	human	ensembl	69_37n	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RP11-823P9.1	Clone_based_vega_gene	ENSG00000183666	22	0	0.00	268	200	42.74	-	-	-
HLA-A	0	genome.wustl.edu	37	6	29910699	29910699	+	Missense_Mutation	SNP	G	G	A			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	6	29910699	29910699	G	A	SNP	HLA-A	ENST00000376806	human	ensembl	69_37n	+1	known	missense	c.239	p.G80E	0.000	pfam_MHC_I_a_a1/a2,superfamily_MHC_I/II-like_Ag-recog	pfam_MHC_I_a_a1/a2,pfam_Ig_C1-set,pfam_MHC_I_a_C,superfamily_MHC_I/II-like_Ag-recog,smart_Ig_C1-set,pfscan_Ig-like,prints_MHC_I_a_a1/a2	-	no_errors	HLA-A	HGNC	ENSG00000206503	210	1	0.47	80	10	11.11	-	-	-
HLA-B	0	genome.wustl.edu	37	6	31324568	31324568	+	Missense_Mutation	SNP	C	C	A			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	6	31324568	31324568	C	A	SNP	HLA-B	ENST00000426590	human	ensembl	69_37n	-1	known	missense	c.242	p.G81V	0.750	pfam_MHC_I_a_a1/a2,superfamily_MHC_I/II-like_Ag-recog	pfam_MHC_I_a_a1/a2,superfamily_MHC_I/II-like_Ag-recog,prints_MHC_I_a_a1/a2	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	HLA-B	HGNC	ENSG00000234745	76	0	0.00	54	8	12.90	-	-	-
HNRNPA1	0	genome.wustl.edu	37	12	54678053	54678053	+	Missense_Mutation	SNP	G	G	A			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	12	54678053	54678053	G	A	SNP	HNRNPA1	ENST00000340913	human	ensembl	69_37n	+1	known	missense	c.1075	p.G359S	0.998	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	HNRNPA1	HGNC	ENSG00000135486	180	0	0.00	73	48	39.67	-	-	-
HOXA13	0	genome.wustl.edu	37	7	27239116	27239116	+	Missense_Mutation	SNP	C	C	G			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	7	27239116	27239116	C	G	SNP	HOXA13	ENST00000222753	human	ensembl	69_37n	-1	known	missense	c.581	p.C194S	1.000	pfam_HoxA13_N	pfam_HoxA13_N,pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_Antifreeze_1	-	no_errors	HOXA13	HGNC	ENSG00000106031	22	0	0.00	12	4	25.00	-	-	-
HYDIN	0	genome.wustl.edu	37	16	71163693	71163693	+	Silent	SNP	A	A	G			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	16	71163693	71163693	A	G	SNP	HYDIN	ENST00000316490	human	ensembl	69_37n	-1	known	silent	c.1077	p.D359	0.002	NULL	superfamily_PapD-like	-	no_errors	HYDIN	HGNC	ENSG00000157423	231	0	0.00	64	15	18.99	-	-	-
KIAA0825	0	genome.wustl.edu	37	5	93722036	93722036	+	Missense_Mutation	SNP	G	G	A			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	5	93722036	93722036	G	A	SNP	KIAA0825	ENST00000427991	human	ensembl	69_37n	-1	known	missense	c.3530	p.T1177M	0.007	NULL	NULL	-	no_errors	KIAA0825	HGNC	ENSG00000185261	243	0	0.00	95	21	18.10	-	-	-
KIR2DL2	0	genome.wustl.edu	37	GL000209.1	35888	35888	+	Missense_Mutation	SNP	A	A	G			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	GL000209.1	35888	35888	A	G	SNP	KIR2DL2	ENST00000344867	human	ensembl	69_37n	+1	known	missense	c.997	p.T333A	NULL	NULL	pfam_Immunoglobulin,smart_Ig_sub	-	no_errors	KIR2DL2	HGNC	ENSG00000215764	18	0	0.00	3	7	70.00	-	-	-
KRT8P11	0	genome.wustl.edu	37	9	102068058	102068058	+	Missense_Mutation	SNP	A	A	G			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	9	102068058	102068058	A	G	SNP	KRT8P11	ENST00000409686	human	ensembl	69_37n	+1	known	missense	c.665	p.N222S	1.000	pfam_F,superfamily_Prefoldin	pfam_F,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	KRT8P11	HGNC	ENSG00000259197	31	0	0.00	532	81	13.19	-	-	-
KRTAP2-3	0	genome.wustl.edu	37	17	39216128	39216128	+	Missense_Mutation	SNP	G	G	A			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	17	39216128	39216128	G	A	SNP	KRTAP2-3	ENST00000391418	human	ensembl	69_37n	-1	known	missense	c.175	p.R59C	0.992	pfam_Keratin-assoc	pfam_Keratin-assoc	-	no_errors	KRTAP2-3	HGNC	ENSG00000212724	23	0	0.00	45	8	15.09	-	-	-
KRTAP9-7	0	genome.wustl.edu	37	17	39432306	39432306	+	Silent	SNP	G	G	A			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	17	39432306	39432306	G	A	SNP	KRTAP9-7	ENST00000391354	human	ensembl	69_37n	+1	known	silent	c.357	p.T119	0.000	NULL	NULL	-	no_errors	KRTAP9-7	HGNC	ENSG00000180386	351	0	0.00	249	33	11.70	-	-	-
KRTAP9-9	0	genome.wustl.edu	37	17	39411711	39411711	+	Missense_Mutation	SNP	C	C	G			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	17	39411711	39411711	C	G	SNP	KRTAP9-9	ENST00000394008	human	ensembl	69_37n	+1	known	missense	c.74	p.T25S	0.130	NULL	NULL	-	no_errors	KRTAP9-9	HGNC	ENSG00000198083	236	0	0.00	212	29	12.03	-	-	-
LAMA3	0	genome.wustl.edu	37	18	21534511	21534511	+	Nonsense_Mutation	SNP	G	G	A			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	18	21534511	21534511	G	A	SNP	LAMA3	ENST00000588004	human	ensembl	69_37n	+1	putative	nonsense	c.302	p.W101*	1.000	superfamily_ConA-like_lec_gl,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,pfscan_Laminin_G	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	LAMA3	HGNC	ENSG00000053747	256	0	0.00	78	41	34.17	-	-	-
LAMA5	0	genome.wustl.edu	37	20	60893617	60893617	+	Missense_Mutation	SNP	C	C	G			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	20	60893617	60893617	C	G	SNP	LAMA5	ENST00000252999	human	ensembl	69_37n	-1	known	missense	c.7132	p.E2378Q	0.005	pfam_Laminin_I	pfam_EGF_laminin,pfam_Laminin_I,pfam_Laminin_G,pfam_Laminin_N,pfam_Laminin_II,pfam_Laminin_B_type_IV,superfamily_ConA-like_lec_gl,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_EGF-like,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N,pfscan_TNFR/NGFR_Cys_rich_reg	-	no_errors	LAMA5	HGNC	ENSG00000130702	63	0	0.00	34	14	29.17	-	-	-
LARGE	0	genome.wustl.edu	37	22	34157362	34157362	+	Missense_Mutation	SNP	G	G	T			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	22	34157362	34157362	G	T	SNP	LARGE	ENST00000354992	human	ensembl	69_37n	-1	known	missense	c.102	p.F34L	1.000	NULL	pfam_Glyco_trans_8	-	no_errors	LARGE	HGNC	ENSG00000133424	308	0	0.00	34	25	42.37	-	-	-
LILRB3	0	genome.wustl.edu	37	19	54725907	54725907	+	Missense_Mutation	SNP	G	G	C			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	19	54725907	54725907	G	C	SNP	LILRB3	ENST00000407860	human	ensembl	69_37n	-1	known	missense	c.451	p.H151D	0.000	NULL	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	LILRB3	HGNC	ENSG00000204577	79	0	0.00	88	10	10.20	-	-	-
LIN28B	0	genome.wustl.edu	37	6	105526463	105526463	+	Silent	SNP	A	A	T			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	6	105526463	105526463	A	T	SNP	LIN28B	ENST00000345080	human	ensembl	69_37n	+1	known	silent	c.558	p.P186	0.338	NULL	pfam_CSP_DNA-bd,superfamily_NA-bd_OB-fold-like,superfamily_Znf_CCHC,smart_Cold_shock_prot,smart_Znf_CCHC,prints_CSP_DNA-bd,pfscan_Znf_CCHC	-	no_errors	LIN28B	HGNC	ENSG00000187772	241	0	0.00	112	85	43.15	-	-	-
LIN9	0	genome.wustl.edu	37	1	226426717	226426717	+	Silent	SNP	C	C	T			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	1	226426717	226426717	C	T	SNP	LIN9	ENST00000328205	human	ensembl	69_37n	-1	known	silent	c.1248	p.K416	0.999	NULL	pfam_DIRP	-	no_errors	LIN9	HGNC	ENSG00000183814	336	0	0.00	46	29	38.67	-	-	-
LMLN-AS1	0	genome.wustl.edu	37	3	197765665	197765665	+	RNA	SNP	T	T	C			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	3	197765665	197765665	T	C	SNP	LMLN-AS1	ENST00000423460	human	ensembl	69_37n	-1	putative	rna	NULL	NULL	0.078	-	-	-	no_errors	LMLN-AS1	HGNC	ENSG00000232832	42	0	0.00	195	25	11.36	-	-	-
LOC100132247	0	genome.wustl.edu	37	16	22545339	22545339	+	Silent	SNP	T	T	C			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	16	22545339	22545339	T	C	SNP	LOC100132247	ENST00000424340	human	ensembl	69_37n	+1	known	silent	c.1035	p.C345	0.917	pfam_NPIP	pfam_NPIP	-	no_errors	RP11-368J21.2	Clone_based_vega_gene	ENSG00000243716	105	0	0.00	69	46	40.00	-	-	-
LOC653786	0	genome.wustl.edu	37	16	22563822	22563822	+	RNA	SNP	G	G	A			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	16	22563822	22563822	G	A	SNP	LOC653786	ENST00000550753	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	RP11-368J21.3	Clone_based_vega_gene	ENSG00000257838	210	0	0.00	60	7	10.45	-	-	-
LOC728047	0	genome.wustl.edu	37	15	32737911	32737911	+	Missense_Mutation	SNP	A	A	G			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	15	32737911	32737911	A	G	SNP	LOC728047	ENST00000509311	human	ensembl	69_37n	-1	novel	missense	c.1475	p.I492T	1.000	NULL	NULL	-	no_errors	RP11-632K20.1	Clone_based_vega_gene	ENSG00000206127	23	0	0.00	4	10	71.43	-	-	-
LRRC37A11P	0	genome.wustl.edu	37	17	37188240	37188240	+	RNA	SNP	C	C	T			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	17	37188240	37188240	C	T	SNP	LRRC37A11P	ENST00000425901	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.006	-	-	-	no_errors	LRRC37A11P	HGNC	ENSG00000214553	212	2	0.93	449	55	10.91	-	-	-
LRRC37A11P	0	genome.wustl.edu	37	17	37188613	37188613	+	RNA	SNP	C	C	T			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	17	37188613	37188613	C	T	SNP	LRRC37A11P	ENST00000425901	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	LRRC37A11P	HGNC	ENSG00000214553	31	0	0.00	426	64	13.06	-	-	-
LSR	0	genome.wustl.edu	37	19	35749935	35749935	+	Missense_Mutation	SNP	A	A	G			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	19	35749935	35749935	A	G	SNP	LSR	ENST00000361790	human	ensembl	69_37n	+1	known	missense	c.686	p.N229S	1.000	smart_Ig_sub,pfscan_Ig-like	pfam_LISCH7,smart_Ig_sub,pfscan_Ig-like	-	no_errors	LSR	HGNC	ENSG00000105699	327	0	0.00	124	18	12.68	-	-	-
MBD3L5	0	genome.wustl.edu	37	19	7032902	7032902	+	Silent	SNP	G	G	A			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	19	7032902	7032902	G	A	SNP	MBD3L5	ENST00000329753	human	ensembl	69_37n	+1	known	silent	c.624	p.G208	0.002	NULL	NULL	-	no_errors	MBD3L5	HGNC	ENSG00000237247	27	0	0.00	135	24	15.09	-	-	-
MED15	0	genome.wustl.edu	37	22	20905620	20905620	+	Missense_Mutation	SNP	A	A	G			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	22	20905620	20905620	A	G	SNP	MED15	ENST00000420849	human	ensembl	69_37n	+1	known	missense	c.1	p.M1V	0.000	NULL	NULL	-	no_errors	MED15	HGNC	ENSG00000099917	146	0	0.00	44	6	11.76	-	-	-
MRPL55	0	genome.wustl.edu	37	1	228295526	228295526	+	Missense_Mutation	SNP	C	C	T			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	1	228295526	228295526	C	T	SNP	MRPL55	ENST00000366731	human	ensembl	69_37n	-1	known	missense	c.179	p.R60H	0.000	pfam_Ribosomal_L55_mit	pfam_Ribosomal_L55_mit	-	no_errors	MRPL55	HGNC	ENSG00000162910	113	0	0.00	45	7	13.46	-	-	-
MT-CO1	0	genome.wustl.edu	37	MT	6026	6026	+	Silent	SNP	G	G	A			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	MT	6026	6026	G	A	SNP	MT-CO1	ENST00000361624	human	ensembl	69_37n	+1	known	silent	c.123	p.L41	NULL	pfam_Cyt_c_Oxase_su1,superfamily_Cyt_c_Oxase_su1_dom,pfscan_Cyt_c_Oxase_su1_dom	pfam_Cyt_c_Oxase_su1,superfamily_Cyt_c_Oxase_su1_dom,pfscan_Cyt_c_Oxase_su1_dom,prints_Cyt_c_Oxase_su1	-	no_errors	MT-CO1	HGNC	ENSG00000198804	107	0	0.00	37	9	19.57	-	-	-
MT-CO2	0	genome.wustl.edu	37	MT	7624	7624	+	Silent	SNP	T	T	A			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	MT	7624	7624	T	A	SNP	MT-CO2	ENST00000361739	human	ensembl	69_37n	+1	known	silent	c.39	p.T13	NULL	pfam_Cyt_c_oxidase_su2_TM_dom,superfamily_Cyt_c_oxidase_su2-like_TM_dom,pfscan_Cyt_c_oxidase_su2_TM_dom,tigrfam_Cyt_c_oxidase_su2	pfam_Cyt_c_oxidase_su2_C,pfam_Cyt_c_oxidase_su2_TM_dom,superfamily_Cupredoxin,superfamily_Cyt_c_oxidase_su2-like_TM_dom,pfscan_Cyt_c_oxidase_su2_TM_dom,pfscan_Cyt_c_oxidase_su2_C,prints_Cyt_c_oxidase_su2_C,tigrfam_Cyt_c_oxidase_su2	-	no_errors	MT-CO2	HGNC	ENSG00000198712	30	0	0.00	38	6	13.64	-	-	-
MT-ND2	0	genome.wustl.edu	37	MT	5027	5027	+	Silent	SNP	C	C	T			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	MT	5027	5027	C	T	SNP	MT-ND2	ENST00000361453	human	ensembl	69_37n	+1	known	silent	c.558	p.H186	NULL	pfam_NADH_UbQ/plastoQ_OxRdtase,prints_NADH_UbQ_OxRdtase_chain2	pfam_NADH_UbQ/plastoQ_OxRdtase,pfam_NADH_DH_su2_C,prints_NADH_UbQ_OxRdtase_chain2	-	no_stop_codon:bad_bp_length_for_coding_region	MT-ND2	HGNC	ENSG00000198763	55	0	0.00	40	7	14.89	-	-	-
MT-ND4	0	genome.wustl.edu	37	MT	10828	10828	+	Silent	SNP	T	T	C			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	MT	10828	10828	T	C	SNP	MT-ND4	ENST00000361381	human	ensembl	69_37n	+1	known	silent	c.69	p.I23	NULL	pfam_NADH_UbQ_OxRdtase_chain4_N	pfam_NADH_UbQ/plastoQ_OxRdtase,pfam_NADH_UbQ_OxRdtase_chain4_N,prints_NADH_UbQ_OxRdtase,tigrfam_NADH_Q_OxRdtase_chainM/4	-	no_stop_codon:bad_bp_length_for_coding_region	MT-ND4	HGNC	ENSG00000198886	47	0	0.00	40	8	16.33	-	-	-
MT-ND6	0	genome.wustl.edu	37	MT	14182	14182	+	Silent	SNP	T	T	C			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	MT	14182	14182	T	C	SNP	MT-ND6	ENST00000361681	human	ensembl	69_37n	-1	known	silent	c.492	p.V164	NULL	pfam_NADH_UbQ/plastoQ_OxRdtase_su6	pfam_NADH_UbQ/plastoQ_OxRdtase_su6	-	no_errors	MT-ND6	HGNC	ENSG00000198695	58	0	0.00	65	9	12.16	-	-	-
MTPAP	0	genome.wustl.edu	37	10	30653319	30653319	+	RNA	SNP	T	T	G			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	10	30653319	30653319	T	G	SNP	MTPAP	ENST00000471055	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.034	-	-	-	no_errors	MTPAP	HGNC	ENSG00000107951	37	0	0.00	178	24	11.88	-	-	-
MTPAP	0	genome.wustl.edu	37	10	30653849	30653849	+	Silent	SNP	A	A	G			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	10	30653849	30653849	A	G	SNP	MTPAP	ENST00000358107	human	ensembl	69_37n	-1	known	silent	c.333	p.G111	0.000	NULL	pfam_PAP_assoc	-	no_errors	MTPAP	HGNC	ENSG00000107951	31	0	0.00	68	11	13.10	-	-	-
MUC12	0	genome.wustl.edu	37	7	100636722	100636722	+	Missense_Mutation	SNP	G	G	C			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	7	100636722	100636722	G	C	SNP	MUC12	ENST00000379442	human	ensembl	69_37n	+1	known	missense	c.3307	p.V1103L	0.000	NULL	pfam_SEA	-	no_errors	MUC12	HGNC	ENSG00000205277	431	0	0.00	134	56	29.47	-	-	-
MUC12	0	genome.wustl.edu	37	7	100637839	100637839	+	Missense_Mutation	SNP	C	C	G			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	7	100637839	100637839	C	G	SNP	MUC12	ENST00000379442	human	ensembl	69_37n	+1	known	missense	c.4424	p.P1475R	0.001	NULL	pfam_SEA	-	no_errors	MUC12	HGNC	ENSG00000205277	325	0	0.00	114	38	25.00	-	-	-
MUC12	0	genome.wustl.edu	37	7	100645121	100645121	+	Silent	SNP	T	T	C			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	7	100645121	100645121	T	C	SNP	MUC12	ENST00000379442	human	ensembl	69_37n	+1	known	silent	c.11706	p.S3902	0.000	NULL	pfam_SEA	-	no_errors	MUC12	HGNC	ENSG00000205277	11	0	0.00	3	5	62.50	-	-	-
MUC12	0	genome.wustl.edu	37	7	100646199	100646199	+	Missense_Mutation	SNP	T	T	C			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	7	100646199	100646199	T	C	SNP	MUC12	ENST00000379442	human	ensembl	69_37n	+1	known	missense	c.12784	p.F4262L	0.015	NULL	pfam_SEA	-	no_errors	MUC12	HGNC	ENSG00000205277	111	0	0.00	402	89	18.09	-	-	-
MUC12	0	genome.wustl.edu	37	7	100646364	100646364	+	Missense_Mutation	SNP	G	G	A			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	7	100646364	100646364	G	A	SNP	MUC12	ENST00000379442	human	ensembl	69_37n	+1	known	missense	c.12949	p.A4317T	0.000	NULL	pfam_SEA	-	no_errors	MUC12	HGNC	ENSG00000205277	162	0	0.00	277	40	12.62	-	-	-
MUC4	0	genome.wustl.edu	37	3	195510361	195510361	+	Missense_Mutation	SNP	G	G	A			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	3	195510361	195510361	G	A	SNP	MUC4	ENST00000463781	human	ensembl	69_37n	-1	known	missense	c.8090	p.A2697V	0.001	NULL	pfam_Nidogen_extracell_dom,pfam_AMOP,pfam_VWF_type-D,smart_Nidogen_extracell_dom,smart_AMOP,smart_VWF_type-D,smart_EGF-like,pfscan_AMOP,pfscan_EG-like_dom	-	no_errors	MUC4	HGNC	ENSG00000145113	116	0	0.00	208	35	14.40	-	-	-
MUC6	0	genome.wustl.edu	37	11	1018692	1018693	+	Frame_Shift_Ins	INS	-	-	C			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	11	1018692	1018693	-	C	INS	MUC6	ENST00000421673	human	ensembl	69_37n	-1	known	frame_shift_ins	c.4109_4108	p.T1370fs	0.006:0.019	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_Cys_knot_C,pfscan_Cys_knot_C	-	no_errors	MUC6	HGNC	ENSG00000184956	1365	6	0.44	108	12	10.00	-	-	-
MYPN	0	genome.wustl.edu	37	10	69881873	69881873	+	Silent	SNP	C	C	T			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	10	69881873	69881873	C	T	SNP	MYPN	ENST00000358913	human	ensembl	69_37n	+1	known	silent	c.678	p.H226	0.015	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	MYPN	HGNC	ENSG00000138347	62	0	0.00	118	84	41.58	-	-	-
NABP2	0	genome.wustl.edu	37	12	56619427	56619427	+	Frame_Shift_Del	DEL	G	G	-			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	12	56619427	56619427	G	-	DEL	NABP2	ENST00000267023	human	ensembl	69_37n	+1	known	frame_shift_del	c.238	p.G80fs	1.000	pfam_NA-bd_OB_tRNA-helicase,superfamily_NA-bd_OB-fold-like	pfam_NA-bd_OB_tRNA-helicase,superfamily_NA-bd_OB-fold-like	-	no_errors	NABP2	HGNC	ENSG00000139579	770	0	0.00	256	30	10.49	-	-	-
NCAPH2	0	genome.wustl.edu	37	22	50960792	50960792	+	Silent	SNP	G	G	T			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	22	50960792	50960792	G	T	SNP	NCAPH2	ENST00000299821	human	ensembl	69_37n	+1	known	silent	c.1254	p.R418	0.986	pfam_Condensin_II_H2-like	pfam_Condensin_II_H2-like	-	no_errors	NCAPH2	HGNC	ENSG00000025770	96	0	0.00	91	15	14.15	-	-	-
NFATC4	0	genome.wustl.edu	37	14	24846866	24846866	+	Missense_Mutation	SNP	C	C	A			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	14	24846866	24846866	C	A	SNP	NFATC4	ENST00000556279	human	ensembl	69_37n	+1	known	missense	c.2760	p.D920E	1.000	NULL	pfam_RHD,pfam_IPT_TIG_rcpt,superfamily_p53-like_TF_DNA-bd,superfamily_Ig_E-set,smart_IPT_TIG_rcpt,pfscan_RHD,prints_NFAT	-	no_errors	NFATC4	HGNC	ENSG00000100968	269	0	0.00	65	10	13.33	-	-	-
NLRC5	0	genome.wustl.edu	37	16	57095775	57095775	+	Missense_Mutation	SNP	C	C	T			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	16	57095775	57095775	C	T	SNP	NLRC5	ENST00000538805	human	ensembl	69_37n	+1	putative	missense	c.3412	p.L1138F	0.001	NULL	smart_Leu-rich_rpt_RNase_inh_sub-typ	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	NLRC5	HGNC	ENSG00000140853	10	0	0.00	2	4	66.67	-	-	-
NPAS2	0	genome.wustl.edu	37	2	101541639	101541639	+	Missense_Mutation	SNP	C	C	T			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	2	101541639	101541639	C	T	SNP	NPAS2	ENST00000542504	human	ensembl	69_37n	+1	known	missense	c.259	p.R87W	1.000	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	pfam_PAS_fold_3,pfam_PAS_fold,pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,smart_PAS,smart_PAC,prints_Nuc_translocat,pfscan_PAS,pfscan_HLH_DNA-bd,tigrfam_PAS	-	no_errors	NPAS2	HGNC	ENSG00000170485	228	1	0.44	82	66	44.59	-	-	-
OBSCN	0	genome.wustl.edu	37	1	228486227	228486227	+	Missense_Mutation	SNP	G	G	T			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	1	228486227	228486227	G	T	SNP	OBSCN	ENST00000366707	human	ensembl	69_37n	+1	known	missense	c.3089	p.C1030F	1.000	pfam_Ig_I-set,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_DH-domain,pfam_Fibronectin_type3,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_IQ_motif_EF-hand-BS,smart_DH-domain,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,pfscan_DH-domain	-	no_errors	OBSCN	HGNC	ENSG00000154358	22	0	0.00	65	36	35.64	-	-	-
OCSTAMP	0	genome.wustl.edu	37	20	45170213	45170213	+	Silent	SNP	A	A	G			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	20	45170213	45170213	A	G	SNP	OCSTAMP	ENST00000279028	human	ensembl	69_37n	-1	known	silent	c.1401	p.S467	0.000	NULL	pfam_DC_STAMP-like	-	no_errors	OCSTAMP	HGNC	ENSG00000149635	196	0	0.00	101	12	10.62	-	-	-
OR2T34	0	genome.wustl.edu	37	1	248737734	248737734	+	Missense_Mutation	SNP	G	G	A			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	1	248737734	248737734	G	A	SNP	OR2T34	ENST00000328782	human	ensembl	69_37n	-1	known	missense	c.325	p.H109Y	0.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2T34	HGNC	ENSG00000183310	443	1	0.23	162	36	18.18	-	-	-
OR2T35	0	genome.wustl.edu	37	1	248801602	248801603	+	Frame_Shift_Ins	INS	-	-	CA			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	1	248801602	248801603	-	CA	INS	OR2T35	ENST00000317450	human	ensembl	69_37n	-1	known	frame_shift_ins	c.958_957	p.I319fs	0.000:0.000	NULL	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2T35	HGNC	ENSG00000177151	12	0	0.00	11	13	54.17	-	-	-
OR51A2	0	genome.wustl.edu	37	11	4976554	4976554	+	Silent	SNP	A	A	G			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	11	4976554	4976554	A	G	SNP	OR51A2	ENST00000380371	human	ensembl	69_37n	-1	known	silent	c.390	p.N130	0.705	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR51A2	HGNC	ENSG00000205496	163	1	0.61	257	30	10.45	-	-	-
OR5AU1	0	genome.wustl.edu	37	14	21623196	21623196	+	Missense_Mutation	SNP	G	G	C			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	14	21623196	21623196	G	C	SNP	OR5AU1	ENST00000304418	human	ensembl	69_37n	-1	known	missense	c.989	p.T330R	0.999	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR5AU1	HGNC	ENSG00000169327	285	0	0.00	174	39	18.31	-	-	-
PALB2	0	genome.wustl.edu	37	16	23646404	23646404	+	Missense_Mutation	SNP	C	C	A			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	16	23646404	23646404	C	A	SNP	PALB2	ENST00000261584	human	ensembl	69_37n	-1	known	missense	c.1463	p.S488I	0.000	NULL	superfamily_WD40_repeat_dom	-	no_errors	PALB2	HGNC	ENSG00000083093	214	1	0.47	91	13	12.38	-	-	-
PASK	0	genome.wustl.edu	37	2	242054403	242054403	+	Missense_Mutation	SNP	G	G	A			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	2	242054403	242054403	G	A	SNP	PASK	ENST00000403638	human	ensembl	69_37n	-1	putative	missense	c.3388	p.R1130W	0.000	pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_PAS_fold,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_PAS,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_PAS,pfscan_Prot_kinase_cat_dom,tigrfam_PAS	-	no_errors	PASK	HGNC	ENSG00000115687	46	0	0.00	36	15	29.41	-	-	-
PCDHB14	0	genome.wustl.edu	37	5	140604126	140604126	+	Missense_Mutation	SNP	C	C	T			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	5	140604126	140604126	C	T	SNP	PCDHB14	ENST00000239449	human	ensembl	69_37n	+1	known	missense	c.1049	p.S350L	0.061	superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB14	HGNC	ENSG00000120327	98	0	0.00	95	12	11.21	-	-	-
PCDHB16	0	genome.wustl.edu	37	5	140563656	140563656	+	Missense_Mutation	SNP	G	G	A			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	5	140563656	140563656	G	A	SNP	PCDHB16	ENST00000361016	human	ensembl	69_37n	+1	known	missense	c.1522	p.A508T	0.066	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB16	HGNC	ENSG00000196963	95	0	0.00	99	15	13.16	-	-	-
PDPR	0	genome.wustl.edu	37	16	70172890	70172890	+	Missense_Mutation	SNP	C	C	T			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	16	70172890	70172890	C	T	SNP	PDPR	ENST00000288050	human	ensembl	69_37n	+1	known	missense	c.1279	p.R427C	1.000	NULL	pfam_FAD-dep_OxRdtase,pfam_GCV_T_N,pfam_GCV_T_C,pfam_FAD_bind_dom	-	no_errors	PDPR	HGNC	ENSG00000090857	182	0	0.00	116	19	14.07	-	-	-
PEPD	0	genome.wustl.edu	37	19	33892709	33892709	+	Silent	SNP	G	G	A			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	19	33892709	33892709	G	A	SNP	PEPD	ENST00000244137	human	ensembl	69_37n	-1	known	silent	c.885	p.N295	0.944	pfam_Pept_M24_structural-domain,superfamily_Pept_M24_structural-domain	pfam_Pept_M24_structural-domain,pfam_Aminopep_P_N,superfamily_Pept_M24_structural-domain	-	no_errors	PEPD	HGNC	ENSG00000124299	340	0	0.00	76	48	38.71	-	-	-
PIEZO1	0	genome.wustl.edu	37	16	88786311	88786311	+	Missense_Mutation	SNP	G	G	A			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	16	88786311	88786311	G	A	SNP	PIEZO1	ENST00000451779	human	ensembl	69_37n	-1	putative	missense	c.2747	p.S916L	0.946	NULL	pfam_DUF3595	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	PIEZO1	HGNC	ENSG00000103335	112	0	0.00	53	7	11.67	-	-	-
PJA1	0	genome.wustl.edu	37	X	68383057	68383057	+	Missense_Mutation	SNP	C	C	A			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	X	68383057	68383057	C	A	SNP	PJA1	ENST00000361478	human	ensembl	69_37n	-1	known	missense	c.25	p.V9L	0.491	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	PJA1	HGNC	ENSG00000181191	384	2	0.52	333	80	19.37	-	-	-
PLEC	0	genome.wustl.edu	37	8	145007427	145007427	+	Silent	SNP	G	G	A			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	8	145007427	145007427	G	A	SNP	PLEC	ENST00000322810	human	ensembl	69_37n	-1	known	silent	c.1767	p.L589	0.983	NULL	pfam_Plectin_repeat,pfam_CH-domain,pfam_S10_plectin_N,superfamily_CH-domain,superfamily_Chorismate_mutase_type_II,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,pfscan_CH-domain	-	no_errors	PLEC	HGNC	ENSG00000178209	274	0	0.00	114	32	21.92	-	-	-
PMS2CL	0	genome.wustl.edu	37	7	6776956	6776956	+	RNA	SNP	A	A	G			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	7	6776956	6776956	A	G	SNP	PMS2CL	ENST00000486256	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	PMS2CL	HGNC	ENSG00000187953	262	0	0.00	361	63	14.79	-	-	-
POLR2J4	0	genome.wustl.edu	37	7	44005513	44005513	+	RNA	SNP	G	G	A			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	7	44005513	44005513	G	A	SNP	POLR2J4	ENST00000427076	human	ensembl	69_37n	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	POLR2J4	HGNC	ENSG00000214783	115	0	0.00	43	9	17.31	-	-	-
PRAMEF11	0	genome.wustl.edu	37	1	12888389	12888389	+	Silent	SNP	A	A	C			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	1	12888389	12888389	A	C	SNP	PRAMEF11	ENST00000535591	human	ensembl	69_37n	-1	known	silent	c.135	p.L45	0.000	NULL	NULL	-	no_errors	PRAMEF11	HGNC	ENSG00000204513	62	0	0.00	136	28	17.07	-	-	-
PRAMEF13	0	genome.wustl.edu	37	1	13448455	13448455	+	Silent	SNP	G	G	T			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	1	13448455	13448455	G	T	SNP	PRAMEF13	ENST00000376132	human	ensembl	69_37n	-1	known	silent	c.1020	p.L340	0.000	NULL	NULL	-	no_errors	PRAMEF13	HGNC	ENSG00000204495	76	0	0.00	67	13	16.25	-	-	-
PRAMEF4	0	genome.wustl.edu	37	1	12939782	12939782	+	Silent	SNP	A	A	G			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	1	12939782	12939782	A	G	SNP	PRAMEF4	ENST00000235349	human	ensembl	69_37n	-1	known	silent	c.1020	p.L340	0.000	NULL	NULL	-	no_errors	PRAMEF4	HGNC	ENSG00000243073	157	0	0.00	441	70	13.67	-	-	-
PRAMEF4	0	genome.wustl.edu	37	1	12939851	12939851	+	Silent	SNP	G	G	A			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	1	12939851	12939851	G	A	SNP	PRAMEF4	ENST00000235349	human	ensembl	69_37n	-1	known	silent	c.951	p.S317	0.003	NULL	NULL	-	no_errors	PRAMEF4	HGNC	ENSG00000243073	274	0	0.00	395	67	14.47	-	-	-
PRAMEF7	0	genome.wustl.edu	37	1	12980232	12980232	+	Silent	SNP	G	G	A			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	1	12980232	12980232	G	A	SNP	PRAMEF7	ENST00000330881	human	ensembl	69_37n	+1	known	silent	c.1424	p.*475	0.000	NULL	NULL	-	no_errors	PRAMEF7	HGNC	ENSG00000204510	44	0	0.00	39	15	27.78	-	-	-
RAD21L1	0	genome.wustl.edu	37	20	1210647	1210647	+	Missense_Mutation	SNP	T	T	C			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	20	1210647	1210647	T	C	SNP	RAD21L1	ENST00000409241	human	ensembl	69_37n	+1	known	missense	c.268	p.C90R	1.000	pfam_Rad21_Rec8_N	pfam_Rad21_Rec8_N,pfam_Rad21/Rec8_C_eu	-	no_errors	RAD21L1	HGNC	ENSG00000244588	308	0	0.00	69	21	23.33	-	-	-
RALY	0	genome.wustl.edu	37	20	32664862	32664862	+	Silent	SNP	C	C	T			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	20	32664862	32664862	C	T	SNP	RALY	ENST00000246194	human	ensembl	69_37n	+1	known	silent	c.687	p.G229	0.049	pirsf_hnRNP_C_Raly	pfam_RRM_dom,smart_RRM_dom,pirsf_hnRNP_C_Raly,pfscan_RRM_dom	-	no_errors	RALY	HGNC	ENSG00000125970	32	0	0.00	44	8	15.09	-	-	-
RFWD2	0	genome.wustl.edu	37	1	176012391	176012391	+	Missense_Mutation	SNP	T	T	G			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	1	176012391	176012391	T	G	SNP	RFWD2	ENST00000459744	human	ensembl	69_37n	-1	novel	missense	c.702	p.R234S	1.000	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat	-	no_start_codon:pseudogene:no_stop_codon	RFWD2	HGNC	ENSG00000143207	185	0	0.00	86	68	44.16	-	-	-
RFX8	0	genome.wustl.edu	37	2	102014145	102014145	+	Silent	SNP	T	T	A			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	2	102014145	102014145	T	A	SNP	RFX8	ENST00000376826	human	ensembl	69_37n	-1	known	silent	c.1626	p.A542	0.000	NULL	pfam_DNA-bd_RFX	-	no_errors	RFX8	HGNC	ENSG00000196460	530	0	0.00	9	7	43.75	-	-	-
RGPD3	0	genome.wustl.edu	37	2	107040572	107040572	+	Missense_Mutation	SNP	T	T	C			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	2	107040572	107040572	T	C	SNP	RGPD3	ENST00000304514	human	ensembl	69_37n	-1	known	missense	c.3851	p.H1284R	1.000	NULL	pfam_Ran_bind_dom,pfam_GRIP,pfam_TPR-1,pfam_TPR_2,smart_TPR_repeat,smart_Ran_bind_dom,smart_GRIP,pfscan_GRIP,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Ran_bind_dom	-	no_errors	RGPD3	HGNC	ENSG00000153165	207	1	0.48	80	54	40.30	-	-	-
RHBDF1	0	genome.wustl.edu	37	16	111120	111120	+	Missense_Mutation	SNP	A	A	C			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	16	111120	111120	A	C	SNP	RHBDF1	ENST00000262316	human	ensembl	69_37n	-1	known	missense	c.1555	p.S519A	1.000	NULL	pfam_Rhomboid_SP,pfam_Peptidase_S54_rhomboid_dom	-	no_errors	RHBDF1	HGNC	ENSG00000007384	14	0	0.00	17	8	32.00	-	-	-
RTL1	0	genome.wustl.edu	37	14	101347090	101347090	+	Missense_Mutation	SNP	C	C	T			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	14	101347090	101347090	C	T	SNP	RTL1	ENST00000534062	human	ensembl	69_37n	-1	known	missense	c.4036	p.E1346K	0.000	NULL	pfam_Retrotrans_gag,superfamily_Peptidase_aspartic	-	no_errors	RTL1	HGNC	ENSG00000254656	98	0	0.00	52	6	10.34	-	-	-
RXFP4	0	genome.wustl.edu	37	1	155912487	155912487	+	Missense_Mutation	SNP	G	G	T			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	1	155912487	155912487	G	T	SNP	RXFP4	ENST00000368318	human	ensembl	69_37n	+1	known	missense	c.987	p.L329F	0.000	NULL	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_ATII_rcpt	-	no_errors	RXFP4	HGNC	ENSG00000173080	34	0	0.00	37	15	28.85	-	-	-
SCD5	0	genome.wustl.edu	37	4	83719603	83719603	+	Missense_Mutation	SNP	C	C	A			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	4	83719603	83719603	C	A	SNP	SCD5	ENST00000319540	human	ensembl	69_37n	-1	known	missense	c.88	p.G30C	0.004	NULL	pfam_Fatty_acid_desaturase-1,prints_Fatty_acid_desaturase-1_core	-	no_errors	SCD5	HGNC	ENSG00000145284	63	0	0.00	12	7	36.84	-	-	-
SCN9A	0	genome.wustl.edu	37	2	167159748	167159748	+	Silent	SNP	C	C	T			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	2	167159748	167159748	C	T	SNP	SCN9A	ENST00000303354	human	ensembl	69_37n	-1	known	silent	c.756	p.L252	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,smart_IQ_motif_EF-hand-BS,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN9A	HGNC	ENSG00000169432	339	0	0.00	103	49	32.24	-	-	-
SEMA6C	0	genome.wustl.edu	37	1	151109550	151109550	+	Missense_Mutation	SNP	C	C	A			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	1	151109550	151109550	C	A	SNP	SEMA6C	ENST00000368913	human	ensembl	69_37n	-1	known	missense	c.757	p.V253L	1.000	pfam_Semaphorin/CD100_Ag,superfamily_Semaphorin/CD100_Ag,smart_Semaphorin/CD100_Ag,pfscan_Semaphorin/CD100_Ag	pfam_Semaphorin/CD100_Ag,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,pfscan_Semaphorin/CD100_Ag	-	no_errors	SEMA6C	HGNC	ENSG00000143434	58	0	0.00	46	22	32.35	-	-	-
SERTAD3	0	genome.wustl.edu	37	19	40947651	40947651	+	Missense_Mutation	SNP	G	G	C			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	19	40947651	40947651	G	C	SNP	SERTAD3	ENST00000322354	human	ensembl	69_37n	-1	known	missense	c.337	p.Q113E	0.844	NULL	pfam_SERTA,pfscan_SERTA	-	no_errors	SERTAD3	HGNC	ENSG00000167565	120	0	0.00	75	10	11.76	-	-	-
SHPK	0	genome.wustl.edu	37	17	3518763	3518763	+	Missense_Mutation	SNP	G	G	C			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	17	3518763	3518763	G	C	SNP	SHPK	ENST00000225519	human	ensembl	69_37n	-1	known	missense	c.892	p.P298A	1.000	NULL	pfam_Carb_kinase_FGGY_N	-	no_errors	SHPK	HGNC	ENSG00000197417	282	0	0.00	23	80	77.67	-	-	-
SHROOM2	0	genome.wustl.edu	37	X	9914857	9914857	+	Silent	SNP	C	C	T			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	X	9914857	9914857	C	T	SNP	SHROOM2	ENST00000380913	human	ensembl	69_37n	+1	known	silent	c.4731	p.H1577	1.000	pfam_ASD2	pfam_ASD2,pfam_ASD1,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	SHROOM2	HGNC	ENSG00000146950	159	0	0.00	106	80	43.01	-	-	-
SIGLEC11	0	genome.wustl.edu	37	19	50462687	50462687	+	Missense_Mutation	SNP	T	T	C			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	19	50462687	50462687	T	C	SNP	SIGLEC11	ENST00000426971	human	ensembl	69_37n	-1	novel	missense	c.956	p.Q319R	0.137	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	SIGLEC11	HGNC	ENSG00000161640	27	0	0.00	22	13	36.11	-	-	-
SLITRK4	0	genome.wustl.edu	37	X	142716453	142716453	+	Nonsense_Mutation	SNP	G	G	C			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	X	142716453	142716453	G	C	SNP	SLITRK4	ENST00000338017	human	ensembl	69_37n	-1	known	nonsense	c.2472	p.Y824*	1.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	SLITRK4	HGNC	ENSG00000179542	238	0	0.00	127	73	36.50	-	-	-
SLITRK4	0	genome.wustl.edu	37	X	142718044	142718044	+	Missense_Mutation	SNP	G	G	A			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	X	142718044	142718044	G	A	SNP	SLITRK4	ENST00000338017	human	ensembl	69_37n	-1	known	missense	c.881	p.T294I	0.992	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	SLITRK4	HGNC	ENSG00000179542	297	0	0.00	97	62	38.51	-	-	-
SMPD4	0	genome.wustl.edu	37	2	130914346	130914346	+	Silent	SNP	G	G	T			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	2	130914346	130914346	G	T	SNP	SMPD4	ENST00000439886	human	ensembl	69_37n	-1	novel	silent	c.741	p.P247	0.003	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	SMPD4	HGNC	ENSG00000136699	42	0	0.00	27	6	18.18	-	-	-
SNAP47	0	genome.wustl.edu	37	1	227920447	227920447	+	RNA	SNP	C	C	T			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	1	227920447	227920447	C	T	SNP	SNAP47	ENST00000480265	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SNAP47	HGNC	ENSG00000143740	62	0	0.00	104	14	11.86	-	-	-
SPPL2B	0	genome.wustl.edu	37	19	2339888	2339888	+	RNA	SNP	C	C	T			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	19	2339888	2339888	C	T	SNP	SPPL2B	ENST00000382189	human	ensembl	69_37n	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	SPPL2B	HGNC	ENSG00000005206	525	1	0.19	15	28	65.12	-	-	-
SPRY1	0	genome.wustl.edu	37	4	124323702	124323702	+	Nonsense_Mutation	SNP	C	C	G			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	4	124323702	124323702	C	G	SNP	SPRY1	ENST00000339241	human	ensembl	69_37n	+1	known	nonsense	c.956	p.S319*	1.000	NULL	pfam_Sprouty	-	no_errors	SPRY1	HGNC	ENSG00000164056	42	0	0.00	98	17	14.66	-	-	-
SRRM2	0	genome.wustl.edu	37	16	2816674	2816674	+	Missense_Mutation	SNP	G	G	C			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	16	2816674	2816674	G	C	SNP	SRRM2	ENST00000301740	human	ensembl	69_37n	+1	known	missense	c.6145	p.A2049P	1.000	NULL	pfam_mRNA_splic_Cwf21	-	no_errors	SRRM2	HGNC	ENSG00000167978	94	0	0.00	87	10	10.31	-	-	-
STXBP6	0	genome.wustl.edu	37	14	25288513	25288513	+	Silent	SNP	C	C	T			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	14	25288513	25288513	C	T	SNP	STXBP6	ENST00000548369	human	ensembl	69_37n	-1	known	silent	c.33	p.A11	0.000	NULL	pfam_Synaptobrevin,pfscan_Synaptobrevin	-	no_errors	STXBP6	HGNC	ENSG00000168952	47	0	0.00	17	8	32.00	-	-	-
TCP10	0	genome.wustl.edu	37	6	167790053	167790053	+	Missense_Mutation	SNP	C	C	T			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	6	167790053	167790053	C	T	SNP	TCP10	ENST00000397829	human	ensembl	69_37n	-1	known	missense	c.557	p.G186E	0.000	NULL	NULL	-	no_errors	TCP10	HGNC	ENSG00000203690	93	0	0.00	8	2	20.00	-	-	-
TCP10	0	genome.wustl.edu	37	6	167790110	167790110	+	Missense_Mutation	SNP	C	C	T			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	6	167790110	167790110	C	T	SNP	TCP10	ENST00000397829	human	ensembl	69_37n	-1	known	missense	c.500	p.R167H	0.001	NULL	NULL	-	no_errors	TCP10	HGNC	ENSG00000203690	93	0	0.00	13	4	23.53	-	-	-
TECTA	0	genome.wustl.edu	37	11	121008612	121008612	+	Missense_Mutation	SNP	G	G	C			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	11	121008612	121008612	G	C	SNP	TECTA	ENST00000264037	human	ensembl	69_37n	+1	known	missense	c.3424	p.V1142L	0.410	pfam_VWF_type-D,smart_VWF_type-D	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_Zona_pellucida_Endoglin/CD105,pfam_Nidogen_extracell_dom,pfam_TIL_dom,superfamily_TIL_dom,smart_Nidogen_extracell_dom,smart_VWC_out,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EGF-like,smart_Zona_pellucida_Endoglin/CD105,pfscan_Zona_pellucida_Endoglin/CD105	-	no_errors	TECTA	HGNC	ENSG00000109927	235	0	0.00	34	29	46.03	-	-	-
TEN1	0	genome.wustl.edu	37	17	73987652	73987652	+	Silent	SNP	C	C	T			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	17	73987652	73987652	C	T	SNP	TEN1	ENST00000397640	human	ensembl	69_37n	+1	known	silent	c.198	p.H66	0.974	NULL	NULL	-	no_errors	TEN1	HGNC	ENSG00000257949	300	0	0.00	62	13	17.33	-	-	-
TEX11	0	genome.wustl.edu	37	X	69749698	69749698	+	Missense_Mutation	SNP	C	C	T			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	X	69749698	69749698	C	T	SNP	TEX11	ENST00000344304	human	ensembl	69_37n	-1	known	missense	c.2717	p.S906N	0.000	NULL	pfam_Meiosis_specific_SPO22,smart_TPR_repeat	-	no_errors	TEX11	HGNC	ENSG00000120498	367	0	0.00	106	20	15.87	-	-	-
TNFAIP2	0	genome.wustl.edu	37	14	103592944	103592946	+	In_Frame_Del	DEL	GAA	GAA	-			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	GAA	GAA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	14	103592944	103592946	GAA	-	DEL	TNFAIP2	ENST00000333007	human	ensembl	69_37n	+1	known	in_frame_del	c.150_152	p.K54in_frame_del	0.977:0.957:0.888	NULL	pfam_Sec6	-	no_errors	TNFAIP2	HGNC	ENSG00000185215	39	0	0.00	23	3	11.54	-	-	-
TP53	0	genome.wustl.edu	37	17	7578532	7578532	+	Missense_Mutation	SNP	A	A	T			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	17	7578532	7578532	A	T	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.398	p.M133K	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	204	0	0.00	3	38	92.68	-	-	-
TPSAB1	0	genome.wustl.edu	37	16	1291622	1291622	+	Missense_Mutation	SNP	A	A	G			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	16	1291622	1291622	A	G	SNP	TPSAB1	ENST00000562675	human	ensembl	69_37n	+1	known	missense	c.421	p.T141A	0.983	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	TPSAB1	HGNC	ENSG00000172236	90	0	0.00	83	11	11.00	-	-	-
TROAP	0	genome.wustl.edu	37	12	49717675	49717675	+	Silent	SNP	T	T	C			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	12	49717675	49717675	T	C	SNP	TROAP	ENST00000257909	human	ensembl	69_37n	+1	known	silent	c.192	p.D64	0.002	NULL	NULL	-	no_errors	TROAP	HGNC	ENSG00000135451	108	0	0.00	57	42	42.00	-	-	-
UGT2B15	0	genome.wustl.edu	37	4	69533861	69533861	+	Nonsense_Mutation	SNP	C	C	T			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	4	69533861	69533861	C	T	SNP	UGT2B15	ENST00000338206	human	ensembl	69_37n	-1	known	nonsense	c.770	p.W257*	1.000	pfam_UDP_glucos_trans	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT2B15	HGNC	ENSG00000196620	223	0	0.00	139	38	21.47	-	-	-
UGT2B17	0	genome.wustl.edu	37	4	69416556	69416556	+	Silent	SNP	T	T	C			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	4	69416556	69416556	T	C	SNP	UGT2B17	ENST00000317746	human	ensembl	69_37n	-1	known	silent	c.1152	p.A384	0.720	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT2B17	HGNC	ENSG00000197888	134	0	0.00	45	8	15.09	-	-	-
UNC5D	0	genome.wustl.edu	37	8	35584005	35584005	+	Missense_Mutation	SNP	G	G	T			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	8	35584005	35584005	G	T	SNP	UNC5D	ENST00000404895	human	ensembl	69_37n	+1	known	missense	c.1639	p.V547F	0.994	pfam_ZU5,smart_ZU5,pfscan_ZU5	pfam_ZU5,pfam_Ig_I-set,pfam_Thrombospondin_1_rpt,pfam_Death,pfam_Immunoglobulin,superfamily_DEATH-like,superfamily_Thrombospondin_1_rpt,smart_Ig_sub,smart_Ig_sub2,smart_Thrombospondin_1_rpt,smart_ZU5,smart_Death,pfscan_Thrombospondin_1_rpt,pfscan_ZU5,pfscan_Ig-like	-	no_errors	UNC5D	HGNC	ENSG00000156687	286	0	0.00	204	99	32.67	-	-	-
USH2A	0	genome.wustl.edu	37	1	215848217	215848217	+	Missense_Mutation	SNP	G	G	T			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	1	215848217	215848217	G	T	SNP	USH2A	ENST00000366943	human	ensembl	69_37n	-1	known	missense	c.13036	p.P4346T	0.002	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_EGF_laminin,pfam_Laminin_G,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_LamG-like,smart_Laminin_N,smart_EGF_laminin,smart_Fibronectin_type3,smart_Laminin_G,pfscan_EGF_laminin,pfscan_Fibronectin_type3,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	USH2A	HGNC	ENSG00000042781	197	0	0.00	77	53	40.77	-	-	-
VIT	0	genome.wustl.edu	37	2	37010495	37010497	+	In_Frame_Del	DEL	AAG	AAG	-			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	AAG	AAG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	2	37010495	37010497	AAG	-	DEL	VIT	ENST00000379242	human	ensembl	69_37n	+1	known	in_frame_del	c.860_862	p.E289in_frame_del	1.000:0.995:1.000	NULL	pfam_VWF_A,pfam_LCCL,superfamily_LCCL,smart_LCCL,smart_VWF_A,pfscan_LCCL,pfscan_VWF_A	-	no_errors	VIT	HGNC	ENSG00000205221	210	0	0.00	126	79	37.80	-	-	-
YIPF7	0	genome.wustl.edu	37	4	44626655	44626655	+	Missense_Mutation	SNP	C	C	T			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	4	44626655	44626655	C	T	SNP	YIPF7	ENST00000332990	human	ensembl	69_37n	-1	known	missense	c.643	p.V215I	1.000	pfam_Yip1	pfam_Yip1	-	no_errors	YIPF7	HGNC	ENSG00000177752	249	0	0.00	36	7	15.91	-	-	-
YTHDF2	0	genome.wustl.edu	37	1	29064036	29064036	+	RNA	SNP	C	C	T			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	1	29064036	29064036	C	T	SNP	YTHDF2	ENST00000478283	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.801	-	-	-	no_errors	YTHDF2	HGNC	ENSG00000198492	114	0	0.00	23	5	17.86	-	-	-
ZNF234	0	genome.wustl.edu	37	19	44660912	44660912	+	Missense_Mutation	SNP	C	C	G			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	19	44660912	44660912	C	G	SNP	ZNF234	ENST00000426739	human	ensembl	69_37n	+1	known	missense	c.743	p.T248S	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF234	HGNC	ENSG00000263002	327	0	0.00	587	74	11.20	-	-	-
ZNF417	0	genome.wustl.edu	37	19	58421080	58421080	+	Missense_Mutation	SNP	G	G	T			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	19	58421080	58421080	G	T	SNP	ZNF417	ENST00000312026	human	ensembl	69_37n	-1	known	missense	c.566	p.A189E	0.001	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF417	HGNC	ENSG00000173480	98	0	0.00	65	64	49.61	-	-	-
ZNF469	0	genome.wustl.edu	37	16	88494870	88494870	+	Missense_Mutation	SNP	C	C	T			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	16	88494870	88494870	C	T	SNP	ZNF469	ENST00000437464	human	ensembl	69_37n	+1	known	missense	c.992	p.A331V	0.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF469	HGNC	ENSG00000225614	11	0	0.00	22	5	18.52	-	-	-
ZNF469	0	genome.wustl.edu	37	16	88496452	88496452	+	Silent	SNP	G	G	C			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	16	88496452	88496452	G	C	SNP	ZNF469	ENST00000437464	human	ensembl	69_37n	+1	known	silent	c.2574	p.P858	0.001	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF469	HGNC	ENSG00000225614	24	0	0.00	35	7	16.67	-	-	-
ZNF66P	0	genome.wustl.edu	37	19	20976654	20976654	+	Missense_Mutation	SNP	C	C	A			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	19	20976654	20976654	C	A	SNP	ZNF66P	ENST00000425625	human	ensembl	69_37n	+1	known	missense	c.334	p.Q112K	0.000	pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF66P	HGNC	ENSG00000160229	353	2	0.56	71	8	10.13	-	-	-
ZNF717	0	genome.wustl.edu	37	3	75786392	75786392	+	Silent	SNP	A	A	G			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	3	75786392	75786392	A	G	SNP	ZNF717	ENST00000422325	human	ensembl	69_37n	-1	known	silent	c.2382	p.T794	0.023	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF717	HGNC	ENSG00000227124	121	0	0.00	69	24	25.81	-	-	-
ZNF777	0	genome.wustl.edu	37	7	149128876	149128876	+	Silent	SNP	C	C	T			TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	7	149128876	149128876	C	T	SNP	ZNF777	ENST00000247930	human	ensembl	69_37n	-1	known	silent	c.2487	p.T829	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,pfam_DUF3669_Znf,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF777	HGNC	ENSG00000196453	22	0	0.00	15	25	62.50	-	-	-
