Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
CA9	0	genome.wustl.edu	37	9	35674290	35674290	+	Missense_Mutation	SNP	G	G	T			TCGA-A2-A04X-01A-21W-A050-09	TCGA-A2-A04X-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	66a73891-2fea-450c-8224-0865d98b4346	20662b69-e7e6-4f78-a7fb-2c1562ca4223	9	35674290	35674290	G	T	SNP	CA9	ENST00000378357	human	ensembl	69_37n	+1	known	missense	c.334	p.D112Y	1.000	NULL	pfam_Carbonic_anhydrase_a,superfamily_Carbonic_anhydrase_a,pfscan_Carbonic_anhydrase_a	-	no_errors	CA9	HGNC	ENSG00000107159	175	0	0.00	99	31	23.85	-	-	-
CLIC5	0	genome.wustl.edu	37	6	46047880	46047880	+	Missense_Mutation	SNP	C	C	T			TCGA-A2-A04X-01A-21W-A050-09	TCGA-A2-A04X-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	66a73891-2fea-450c-8224-0865d98b4346	20662b69-e7e6-4f78-a7fb-2c1562ca4223	6	46047880	46047880	C	T	SNP	CLIC5	ENST00000185206	human	ensembl	69_37n	-1	known	missense	c.100	p.D34N	0.023	NULL	superfamily_Glutathione-S-Trfase_C-like,superfamily_Thioredoxin-like_fold,prints_Int_Cl_channel,tigrfam_Int_Cl_channel	-	no_errors	CLIC5	HGNC	ENSG00000112782	223	0	0.00	236	45	16.01	-	-	-
CYSLTR2	0	genome.wustl.edu	37	13	49281015	49281015	+	Missense_Mutation	SNP	G	G	A			TCGA-A2-A04X-01A-21W-A050-09	TCGA-A2-A04X-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	66a73891-2fea-450c-8224-0865d98b4346	20662b69-e7e6-4f78-a7fb-2c1562ca4223	13	49281015	49281015	G	A	SNP	CYSLTR2	ENST00000282018	human	ensembl	69_37n	+1	known	missense	c.62	p.G21D	0.000	prints_CLT2_recept	pfam_7TM_GPCR_Rhodpsn,pfam_TAS2_rcpt,prints_7TM_GPCR_Rhodpsn,prints_CLT2_recept,prints_Cyst_leuk_rcpt,prints_P2_purnocptor,prints_Protea_act_rcpt,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	CYSLTR2	HGNC	ENSG00000152207	100	0	0.00	88	19	17.76	-	-	-
DNAH17	0	genome.wustl.edu	37	17	76556902	76556902	+	Missense_Mutation	SNP	C	C	A			TCGA-A2-A04X-01A-21W-A050-09	TCGA-A2-A04X-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	66a73891-2fea-450c-8224-0865d98b4346	20662b69-e7e6-4f78-a7fb-2c1562ca4223	17	76556902	76556902	C	A	SNP	DNAH17	ENST00000389840	human	ensembl	69_37n	-1	known	missense	c.1951	p.D651Y	1.000	pfam_Dynein_heavy_dom-1	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_HR1_rho-bd	-	no_errors	DNAH17	HGNC	ENSG00000187775	43	0	0.00	22	7	24.14	-	-	-
DNAH3	0	genome.wustl.edu	37	16	20974834	20974834	+	Missense_Mutation	SNP	C	C	T			TCGA-A2-A04X-01A-21W-A050-09	TCGA-A2-A04X-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	66a73891-2fea-450c-8224-0865d98b4346	20662b69-e7e6-4f78-a7fb-2c1562ca4223	16	20974834	20974834	C	T	SNP	DNAH3	ENST00000261383	human	ensembl	69_37n	-1	known	missense	c.10372	p.E3458K	0.166	pfam_Dynein_heavy	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_Prefoldin,smart_AAA+_ATPase	-	no_errors	DNAH3	HGNC	ENSG00000158486	405	0	0.00	200	47	18.95	-	-	-
EEA1	0	genome.wustl.edu	37	12	93226389	93226389	+	Missense_Mutation	SNP	C	C	G			TCGA-A2-A04X-01A-21W-A050-09	TCGA-A2-A04X-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	66a73891-2fea-450c-8224-0865d98b4346	20662b69-e7e6-4f78-a7fb-2c1562ca4223	12	93226389	93226389	C	G	SNP	EEA1	ENST00000322349	human	ensembl	69_37n	-1	known	missense	c.1153	p.E385Q	1.000	NULL	pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pfscan_Znf_FYVE-rel,pfscan_Znf_C2H2	-	no_errors	EEA1	HGNC	ENSG00000102189	106	0	0.00	100	33	24.81	-	-	-
FANCM	0	genome.wustl.edu	37	14	45658083	45658085	+	In_Frame_Del	DEL	GAA	GAA	-			TCGA-A2-A04X-01A-21W-A050-09	TCGA-A2-A04X-10A-01W-A055-09	GAA	GAA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	66a73891-2fea-450c-8224-0865d98b4346	20662b69-e7e6-4f78-a7fb-2c1562ca4223	14	45658083	45658085	GAA	-	DEL	FANCM	ENST00000267430	human	ensembl	69_37n	+1	known	in_frame_del	c.4858_4860	p.E1622in_frame_del	1.000:0.998:0.996	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,superfamily_Restrct_endonuc-II-like,superfamily_RuvA_2-like,smart_Helicase_ATP-bd,smart_Helicase_C,smart_ERCC4_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	FANCM	HGNC	ENSG00000187790	111	0	0.00	87	22	20.18	-	-	-
FBXO11	0	genome.wustl.edu	37	2	48047527	48047527	+	Missense_Mutation	SNP	C	C	T			TCGA-A2-A04X-01A-21W-A050-09	TCGA-A2-A04X-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	66a73891-2fea-450c-8224-0865d98b4346	20662b69-e7e6-4f78-a7fb-2c1562ca4223	2	48047527	48047527	C	T	SNP	FBXO11	ENST00000403359	human	ensembl	69_37n	-1	known	missense	c.1771	p.D591N	1.000	superfamily_F-box_dom_cyclin-like,superfamily_Pectin_lyase_fold/virulence,smart_Carb-bd_sugar_hydrolysis-dom,smart_PbH1	pfam_Znf_N-recognin,pfam_F-box_dom_cyclin-like,superfamily_Pectin_lyase_fold/virulence,superfamily_F-box_dom_cyclin-like,smart_F-box_dom_cyclin-like,smart_PbH1,smart_Carb-bd_sugar_hydrolysis-dom,smart_Znf_N-recognin_met,pfscan_F-box_dom_cyclin-like,pfscan_Znf_N-recognin,tigrfam_Para_beta_helix_rpt-2	-	no_errors	FBXO11	HGNC	ENSG00000138081	108	0	0.00	69	22	24.18	-	-	-
GSTA5	0	genome.wustl.edu	37	6	52701123	52701123	+	Silent	SNP	G	G	A			TCGA-A2-A04X-01A-21W-A050-09	TCGA-A2-A04X-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	66a73891-2fea-450c-8224-0865d98b4346	20662b69-e7e6-4f78-a7fb-2c1562ca4223	6	52701123	52701123	G	A	SNP	GSTA5	ENST00000284562	human	ensembl	69_37n	-1	known	silent	c.183	p.D61	1.000	pfam_Glutathione_S-Trfase_N,superfamily_Thioredoxin-like_fold	pfam_Glutathione_S-Trfase_N,pfam_GST_C,superfamily_Glutathione-S-Trfase_C-like,superfamily_Thioredoxin-like_fold,prints_GST_alpha	-	no_errors	GSTA5	HGNC	ENSG00000182793	227	0	0.00	245	62	20.13	-	-	-
HLA-DQB1	0	genome.wustl.edu	37	6	32634318	32634318	+	Missense_Mutation	SNP	C	C	A			TCGA-A2-A04X-01A-21W-A050-09	TCGA-A2-A04X-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	66a73891-2fea-450c-8224-0865d98b4346	20662b69-e7e6-4f78-a7fb-2c1562ca4223	6	32634318	32634318	C	A	SNP	HLA-DQB1	ENST00000374943	human	ensembl	69_37n	-1	known	missense	c.67	p.A23S	0.043	superfamily_MHC_I/II-like_Ag-recog	pfam_MHC_II_b_N,pfam_Ig_C1-set,superfamily_MHC_I/II-like_Ag-recog,smart_MHC_II_b_N,smart_Ig_C1-set,pfscan_Ig-like	-	no_errors	HLA-DQB1	HGNC	ENSG00000179344	12	0	0.00	23	12	33.33	-	-	-
HLA-DRB6	0	genome.wustl.edu	37	6	32522535	32522535	+	RNA	SNP	C	C	T			TCGA-A2-A04X-01A-21W-A050-09	TCGA-A2-A04X-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	66a73891-2fea-450c-8224-0865d98b4346	20662b69-e7e6-4f78-a7fb-2c1562ca4223	6	32522535	32522535	C	T	SNP	HLA-DRB6	ENST00000411500	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.975	-	-	-	no_errors	HLA-DRB6	HGNC	ENSG00000229391	9	0	0.00	8	6	40.00	-	-	-
IPO4	0	genome.wustl.edu	37	14	24656970	24656970	+	Missense_Mutation	SNP	G	G	A			TCGA-A2-A04X-01A-21W-A050-09	TCGA-A2-A04X-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	66a73891-2fea-450c-8224-0865d98b4346	20662b69-e7e6-4f78-a7fb-2c1562ca4223	14	24656970	24656970	G	A	SNP	IPO4	ENST00000354464	human	ensembl	69_37n	-1	known	missense	c.311	p.S104L	0.889	superfamily_ARM-type_fold	pfam_HEAT,pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N,pfscan_HEAT_type_2,pfscan_Importin-beta_N	-	no_errors	IPO4	HGNC	ENSG00000196497	78	0	0.00	33	13	28.26	-	-	-
ITGB1	0	genome.wustl.edu	37	10	33217185	33217185	+	Silent	SNP	T	T	C			TCGA-A2-A04X-01A-21W-A050-09	TCGA-A2-A04X-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	66a73891-2fea-450c-8224-0865d98b4346	20662b69-e7e6-4f78-a7fb-2c1562ca4223	10	33217185	33217185	T	C	SNP	ITGB1	ENST00000374956	human	ensembl	69_37n	-1	known	silent	c.384	p.P128	0.215	pirsf_Integrin_bsu,pfam_Integrin_bsu_N,smart_Integrin_bsu_N	pirsf_Integrin_bsu,pfam_Integrin_bsu_N,pfam_Integrin_bsu_tail,pfam_Integrin_bsu_cyt,pfam_EGF_extracell,superfamily_Integrin_bsu_tail,superfamily_Plexin-like_fold,smart_Plexin-like,smart_Integrin_bsu_N,prints_Integrin_bsu	-	no_errors	ITGB1	HGNC	ENSG00000150093	106	0	0.00	65	25	27.78	-	-	-
LRP2	0	genome.wustl.edu	37	2	170060630	170060630	+	Missense_Mutation	SNP	C	C	G			TCGA-A2-A04X-01A-21W-A050-09	TCGA-A2-A04X-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	66a73891-2fea-450c-8224-0865d98b4346	20662b69-e7e6-4f78-a7fb-2c1562ca4223	2	170060630	170060630	C	G	SNP	LRP2	ENST00000263816	human	ensembl	69_37n	-1	known	missense	c.7867	p.G2623R	1.000	smart_LDLR_classB_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt,superfamily_LDrepeatLR_classA_rpt,superfamily_TIL_dom,smart_LDrepeatLR_classA_rpt,smart_EGF-like,smart_EGF-like_Ca-bd,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP2	HGNC	ENSG00000081479	239	0	0.00	166	53	24.20	-	-	-
LRRC16A	0	genome.wustl.edu	37	6	25600890	25600890	+	Silent	SNP	G	G	A			TCGA-A2-A04X-01A-21W-A050-09	TCGA-A2-A04X-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	66a73891-2fea-450c-8224-0865d98b4346	20662b69-e7e6-4f78-a7fb-2c1562ca4223	6	25600890	25600890	G	A	SNP	LRRC16A	ENST00000329474	human	ensembl	69_37n	+1	novel	silent	c.3468	p.R1156	0.853	NULL	smart_Leu-rich_rpt_RNase_inh_sub-typ	-	no_errors	LRRC16A	HGNC	ENSG00000079691	319	0	0.00	222	62	21.83	-	-	-
MGAM	0	genome.wustl.edu	37	7	141780655	141780655	+	Missense_Mutation	SNP	C	C	T			TCGA-A2-A04X-01A-21W-A050-09	TCGA-A2-A04X-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	66a73891-2fea-450c-8224-0865d98b4346	20662b69-e7e6-4f78-a7fb-2c1562ca4223	7	141780655	141780655	C	T	SNP	MGAM	ENST00000475668	human	ensembl	69_37n	+1	putative	missense	c.5915	p.S1972F	0.012	superfamily_Glyco_hydro-type_carb-bd	pfam_Glyco_hydro_31,pfam_P_trefoil,superfamily_Glycoside_hydrolase_SF,superfamily_Glyco_hydro-type_carb-bd,smart_P_trefoil	-	no_errors	MGAM	HGNC	ENSG00000257335	155	0	0.00	57	42	42.42	-	-	-
NNT	0	genome.wustl.edu	37	5	43704416	43704416	+	Missense_Mutation	SNP	C	C	G			TCGA-A2-A04X-01A-21W-A050-09	TCGA-A2-A04X-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	66a73891-2fea-450c-8224-0865d98b4346	20662b69-e7e6-4f78-a7fb-2c1562ca4223	5	43704416	43704416	C	G	SNP	NNT	ENST00000264663	human	ensembl	69_37n	+1	known	missense	c.3171	p.F1057L	1.000	pfam_NADH_DH_b	pfam_NADH_DH_b,pfam_AlaDH/PNT_NAD(H)-bd,pfam_AlaDH/PNT_N,tigrfam_NADP_transhyd_a	-	no_errors	NNT	HGNC	ENSG00000112992	147	0	0.00	141	43	23.24	-	-	-
OGN	0	genome.wustl.edu	37	9	95147960	95147960	+	Missense_Mutation	SNP	C	C	G			TCGA-A2-A04X-01A-21W-A050-09	TCGA-A2-A04X-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	66a73891-2fea-450c-8224-0865d98b4346	20662b69-e7e6-4f78-a7fb-2c1562ca4223	9	95147960	95147960	C	G	SNP	OGN	ENST00000262551	human	ensembl	69_37n	-1	known	missense	c.839	p.G280A	1.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	OGN	HGNC	ENSG00000106809	203	0	0.00	170	60	26.09	-	-	-
PDE3B	0	genome.wustl.edu	37	11	14666376	14666377	+	Frame_Shift_Ins	INS	-	-	G			TCGA-A2-A04X-01A-21W-A050-09	TCGA-A2-A04X-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	66a73891-2fea-450c-8224-0865d98b4346	20662b69-e7e6-4f78-a7fb-2c1562ca4223	11	14666376	14666377	-	G	INS	PDE3B	ENST00000282096	human	ensembl	69_37n	+1	known	frame_shift_ins	c.755_756	p.A255fs	0.719:0.721	NULL	pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom	-	no_errors	PDE3B	HGNC	ENSG00000152270	21	0	0.00	21	3	12.50	-	-	-
PDZRN3	0	genome.wustl.edu	37	3	73433778	73433778	+	Missense_Mutation	SNP	G	G	A			TCGA-A2-A04X-01A-21W-A050-09	TCGA-A2-A04X-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	66a73891-2fea-450c-8224-0865d98b4346	20662b69-e7e6-4f78-a7fb-2c1562ca4223	3	73433778	73433778	G	A	SNP	PDZRN3	ENST00000263666	human	ensembl	69_37n	-1	known	missense	c.1939	p.R647C	1.000	NULL	pfam_PDZ,pfam_Znf_C3HC4_RING-type,superfamily_PDZ,superfamily_TRAF-like,smart_Znf_RING,smart_PDZ,pfscan_PDZ,pfscan_Znf_RING,pfscan_Znf_TRAF	-	no_errors	PDZRN3	HGNC	ENSG00000121440	75	0	0.00	48	7	12.73	-	-	-
PTK7	0	genome.wustl.edu	37	6	43099859	43099859	+	Silent	SNP	G	G	A			TCGA-A2-A04X-01A-21W-A050-09	TCGA-A2-A04X-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	66a73891-2fea-450c-8224-0865d98b4346	20662b69-e7e6-4f78-a7fb-2c1562ca4223	6	43099859	43099859	G	A	SNP	PTK7	ENST00000230419	human	ensembl	69_37n	+1	known	silent	c.918	p.Q306	0.998	smart_Ig_sub,smart_Ig_sub2	pfam_Ig_I-set,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Immunoglobulin,pfam_Prot_kinase_cat_dom,pfam_Ig_V-set,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	PTK7	HGNC	ENSG00000112655	44	0	0.00	25	5	16.67	-	-	-
SARM1	0	genome.wustl.edu	37	17	26723195	26723195	+	Nonsense_Mutation	SNP	G	G	T			TCGA-A2-A04X-01A-21W-A050-09	TCGA-A2-A04X-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	66a73891-2fea-450c-8224-0865d98b4346	20662b69-e7e6-4f78-a7fb-2c1562ca4223	17	26723195	26723195	G	T	SNP	SARM1	ENST00000457710	human	ensembl	69_37n	+1	novel	nonsense	c.1963	p.E655*	1.000	smart_TIR_dom	pfam_SAM_2,pfam_SAM_type1,superfamily_ARM-type_fold,superfamily_TIR_dom,superfamily_SAM/pointed,smart_SAM,smart_TIR_dom,pfscan_SAM	-	no_errors	SARM1	HGNC	ENSG00000004139	216	0	0.00	110	34	23.61	-	-	-
SHROOM4	0	genome.wustl.edu	37	X	50376535	50376535	+	Silent	SNP	G	G	A			TCGA-A2-A04X-01A-21W-A050-09	TCGA-A2-A04X-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	66a73891-2fea-450c-8224-0865d98b4346	20662b69-e7e6-4f78-a7fb-2c1562ca4223	X	50376535	50376535	G	A	SNP	SHROOM4	ENST00000289292	human	ensembl	69_37n	-1	known	silent	c.2538	p.S846	0.936	NULL	pfam_ASD2,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	SHROOM4	HGNC	ENSG00000158352	305	0	0.00	148	52	25.87	-	-	-
STK31	0	genome.wustl.edu	37	7	23825188	23825188	+	Missense_Mutation	SNP	G	G	C			TCGA-A2-A04X-01A-21W-A050-09	TCGA-A2-A04X-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	66a73891-2fea-450c-8224-0865d98b4346	20662b69-e7e6-4f78-a7fb-2c1562ca4223	7	23825188	23825188	G	C	SNP	STK31	ENST00000355870	human	ensembl	69_37n	+1	known	missense	c.2240	p.R747P	1.000	superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_cat_dom	pfam_Tudor,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Tudor,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Tudor,pfscan_Prot_kinase_cat_dom	-	no_errors	STK31	HGNC	ENSG00000196335	310	0	0.00	202	68	25.19	-	-	-
UBE2Q1	0	genome.wustl.edu	37	1	154528347	154528350	+	Frame_Shift_Del	DEL	CTTT	CTTT	-			TCGA-A2-A04X-01A-21W-A050-09	TCGA-A2-A04X-10A-01W-A055-09	CTTT	CTTT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	66a73891-2fea-450c-8224-0865d98b4346	20662b69-e7e6-4f78-a7fb-2c1562ca4223	1	154528347	154528350	CTTT	-	DEL	UBE2Q1	ENST00000292211	human	ensembl	69_37n	-1	known	frame_shift_del	c.421_418	p.K140fs	1.000:1.000:1.000:1.000	superfamily_UBQ-conjugating_enzyme/RWD	pfam_UBQ-conjugat_E2,superfamily_UBQ-conjugating_enzyme/RWD,pfscan_UBQ-conjugat_E2	-	no_errors	UBE2Q1	HGNC	ENSG00000160714	93	0	0.00	171	24	12.24	-	-	-
VPS53	0	genome.wustl.edu	37	17	559191	559191	+	Silent	SNP	C	C	T			TCGA-A2-A04X-01A-21W-A050-09	TCGA-A2-A04X-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	66a73891-2fea-450c-8224-0865d98b4346	20662b69-e7e6-4f78-a7fb-2c1562ca4223	17	559191	559191	C	T	SNP	VPS53	ENST00000437048	human	ensembl	69_37n	-1	known	silent	c.375	p.V125	0.922	pfam_Vps53_N,pfam_Vacuolar_sorting-assoc_54	pfam_Vps53_N,pfam_Vacuolar_sorting-assoc_54	-	no_errors	VPS53	HGNC	ENSG00000141252	354	0	0.00	216	90	29.41	-	-	-
WIF1	0	genome.wustl.edu	37	12	65514331	65514331	+	Missense_Mutation	SNP	C	C	T			TCGA-A2-A04X-01A-21W-A050-09	TCGA-A2-A04X-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	66a73891-2fea-450c-8224-0865d98b4346	20662b69-e7e6-4f78-a7fb-2c1562ca4223	12	65514331	65514331	C	T	SNP	WIF1	ENST00000286574	human	ensembl	69_37n	-1	known	missense	c.154	p.E52K	1.000	pfam_WIF,smart_WIF,pfscan_WIF,prints_Wnt-inh	pfam_WIF,pfam_EGF_extracell,smart_WIF,smart_EGF-like,pfscan_EG-like_dom,pfscan_WIF,prints_Wnt-inh	-	no_errors	WIF1	HGNC	ENSG00000156076	68	0	0.00	67	31	31.63	-	-	-
WTAP	0	genome.wustl.edu	37	6	160169354	160169354	+	Silent	SNP	G	G	T			TCGA-A2-A04X-01A-21W-A050-09	TCGA-A2-A04X-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	66a73891-2fea-450c-8224-0865d98b4346	20662b69-e7e6-4f78-a7fb-2c1562ca4223	6	160169354	160169354	G	T	SNP	WTAP	ENST00000358372	human	ensembl	69_37n	+1	known	silent	c.405	p.L135	1.000	NULL	NULL	-	no_errors	WTAP	HGNC	ENSG00000146457	236	0	0.00	129	61	32.11	-	-	-
ZHX3	0	genome.wustl.edu	37	20	39831958	39831958	+	Nonsense_Mutation	SNP	G	G	A			TCGA-A2-A04X-01A-21W-A050-09	TCGA-A2-A04X-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	66a73891-2fea-450c-8224-0865d98b4346	20662b69-e7e6-4f78-a7fb-2c1562ca4223	20	39831958	39831958	G	A	SNP	ZHX3	ENST00000421422	human	ensembl	69_37n	-1	novel	nonsense	c.724	p.Q242*	0.949	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ZHX3	HGNC	ENSG00000174306	218	0	0.00	143	39	21.20	-	-	-
ZNF213	0	genome.wustl.edu	37	16	3191255	3191255	+	Silent	SNP	C	C	T			TCGA-A2-A04X-01A-21W-A050-09	TCGA-A2-A04X-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	66a73891-2fea-450c-8224-0865d98b4346	20662b69-e7e6-4f78-a7fb-2c1562ca4223	16	3191255	3191255	C	T	SNP	ZNF213	ENST00000396878	human	ensembl	69_37n	+1	known	silent	c.1287	p.F429	0.314	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF213	HGNC	ENSG00000085644	42	0	0.00	25	10	28.57	-	-	-
