Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
ABCB8	0	genome.wustl.edu	37	7	150737592	150737592	+	Missense_Mutation	SNP	G	G	A			TCGA-A2-A0CO-01A-13D-A228-09	TCGA-A2-A0CO-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	36053173-6839-43ec-8157-75d729085e6b	fea38127-979d-4085-a9e1-6965b99458f3	7	150737592	150737592	G	A	SNP	ABCB8	ENST00000297504	human	ensembl	69_37n	+1	known	missense	c.1310	p.R437Q	1.000	superfamily_ABC_transptrTM_dom_typ1,pfscan_ABC_transporter_type1	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCB8	HGNC	ENSG00000197150	34	0	0.00	51	18	26.09	-	-	-
ACTL6B	0	genome.wustl.edu	37	7	100243916	100243916	+	Missense_Mutation	SNP	G	G	A			TCGA-A2-A0CO-01A-13D-A228-09	TCGA-A2-A0CO-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	36053173-6839-43ec-8157-75d729085e6b	fea38127-979d-4085-a9e1-6965b99458f3	7	100243916	100243916	G	A	SNP	ACTL6B	ENST00000160382	human	ensembl	69_37n	-1	known	missense	c.1156	p.R386C	1.000	pfam_Actin-like,smart_Actin-like	pfam_Actin-like,smart_Actin-like,prints_Actin-like	-	no_errors	ACTL6B	HGNC	ENSG00000077080	58	0	0.00	37	19	33.93	-	-	-
ANKRD44	0	genome.wustl.edu	37	2	197857433	197857433	+	RNA	SNP	T	T	G			TCGA-A2-A0CO-01A-13D-A228-09	TCGA-A2-A0CO-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	36053173-6839-43ec-8157-75d729085e6b	fea38127-979d-4085-a9e1-6965b99458f3	2	197857433	197857433	T	G	SNP	ANKRD44	ENST00000486006	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.937	-	-	-	no_errors	ANKRD44	HGNC	ENSG00000065413	39	0	0.00	49	7	12.50	-	-	-
B4GALT6	0	genome.wustl.edu	37	18	29246241	29246244	+	Frame_Shift_Del	DEL	TTTA	TTTA	-			TCGA-A2-A0CO-01A-13D-A228-09	TCGA-A2-A0CO-10A-01D-A22A-09	TTTA	TTTA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	36053173-6839-43ec-8157-75d729085e6b	fea38127-979d-4085-a9e1-6965b99458f3	18	29246241	29246244	TTTA	-	DEL	B4GALT6	ENST00000306851	human	ensembl	69_37n	-1	known	frame_shift_del	c.210_207	p.N69fs	1.000:1.000:1.000:0.987	NULL	pfam_Galactosyl_T_2_met,prints_Galactosyl_T_2_met	-	no_errors	B4GALT6	HGNC	ENSG00000118276	55	0	0.00	44	17	27.87	-	-	-
C12orf73	0	genome.wustl.edu	37	12	104345123	104345123	+	RNA	SNP	A	A	G			TCGA-A2-A0CO-01A-13D-A228-09	TCGA-A2-A0CO-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	36053173-6839-43ec-8157-75d729085e6b	fea38127-979d-4085-a9e1-6965b99458f3	12	104345123	104345123	A	G	SNP	C12orf73	ENST00000543740	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.185	-	-	-	no_errors	C12orf73	HGNC	ENSG00000204954	8	0	0.00	8	7	46.67	-	-	-
CAMK1D	0	genome.wustl.edu	37	10	12856243	12856243	+	Missense_Mutation	SNP	G	G	C			TCGA-A2-A0CO-01A-13D-A228-09	TCGA-A2-A0CO-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	36053173-6839-43ec-8157-75d729085e6b	fea38127-979d-4085-a9e1-6965b99458f3	10	12856243	12856243	G	C	SNP	CAMK1D	ENST00000378847	human	ensembl	69_37n	+1	known	missense	c.691	p.E231Q	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CAMK1D	HGNC	ENSG00000183049	45	0	0.00	49	15	23.44	-	-	-
CCDC39	0	genome.wustl.edu	37	3	180426685	180426685	+	RNA	SNP	C	C	T			TCGA-A2-A0CO-01A-13D-A228-09	TCGA-A2-A0CO-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	36053173-6839-43ec-8157-75d729085e6b	fea38127-979d-4085-a9e1-6965b99458f3	3	180426685	180426685	C	T	SNP	CCDC39	ENST00000485055	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CCDC39	HGNC	ENSG00000145075	71	0	0.00	39	13	25.00	-	-	-
CDH1	0	genome.wustl.edu	37	16	68845757	68845757	+	Nonsense_Mutation	SNP	C	C	T			TCGA-A2-A0CO-01A-13D-A228-09	TCGA-A2-A0CO-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	36053173-6839-43ec-8157-75d729085e6b	fea38127-979d-4085-a9e1-6965b99458f3	16	68845757	68845757	C	T	SNP	CDH1	ENST00000261769	human	ensembl	69_37n	+1	known	nonsense	c.1003	p.R335*	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH1	HGNC	ENSG00000039068	23	0	0.00	17	21	55.26	-	-	-
CNTNAP3B	0	genome.wustl.edu	37	9	43853528	43853528	+	Missense_Mutation	SNP	G	G	A			TCGA-A2-A0CO-01A-13D-A228-09	TCGA-A2-A0CO-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	36053173-6839-43ec-8157-75d729085e6b	fea38127-979d-4085-a9e1-6965b99458f3	9	43853528	43853528	G	A	SNP	CNTNAP3B	ENST00000377561	human	ensembl	69_37n	+1	known	missense	c.1934	p.S645N	0.999	superfamily_Fibrinogen_a/b/g_C	pfam_Laminin_G,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,superfamily_ConA-like_lec_gl,superfamily_Fibrinogen_a/b/g_C,smart_Coagulation_fac_5/8-C_type_dom,smart_Laminin_G,smart_EGF-like,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Laminin_G	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	CNTNAP3B	HGNC	ENSG00000154529	59	0	0.00	62	9	12.68	-	-	-
DMD	0	genome.wustl.edu	37	X	32482759	32482759	+	Missense_Mutation	SNP	C	C	T			TCGA-A2-A0CO-01A-13D-A228-09	TCGA-A2-A0CO-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	36053173-6839-43ec-8157-75d729085e6b	fea38127-979d-4085-a9e1-6965b99458f3	X	32482759	32482759	C	T	SNP	DMD	ENST00000357033	human	ensembl	69_37n	-1	known	missense	c.3220	p.E1074K	1.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin,pirsf_Dystrophin/utrophin	pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_Rsp5_WWP,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_WW_Rsp5_WWP,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_Rsp5_WWP,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_Rsp5_WWP,pfscan_Znf_ZZ	-	no_errors	DMD	HGNC	ENSG00000198947	60	0	0.00	56	9	13.85	-	-	-
DNAH12	0	genome.wustl.edu	37	3	57410762	57410762	+	Missense_Mutation	SNP	C	C	T			TCGA-A2-A0CO-01A-13D-A228-09	TCGA-A2-A0CO-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	36053173-6839-43ec-8157-75d729085e6b	fea38127-979d-4085-a9e1-6965b99458f3	3	57410762	57410762	C	T	SNP	DNAH12	ENST00000495027	human	ensembl	69_37n	-1	putative	missense	c.5360	p.R1787H	0.999	NULL	pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_stop_codon	DNAH12	HGNC	ENSG00000174844	41	0	0.00	30	4	11.76	-	-	-
ECHDC3	0	genome.wustl.edu	37	10	11789358	11789358	+	Silent	SNP	T	T	C			TCGA-A2-A0CO-01A-13D-A228-09	TCGA-A2-A0CO-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	36053173-6839-43ec-8157-75d729085e6b	fea38127-979d-4085-a9e1-6965b99458f3	10	11789358	11789358	T	C	SNP	ECHDC3	ENST00000379215	human	ensembl	69_37n	+1	known	silent	c.181	p.L61	0.998	pfam_Crotonase_core	pfam_Crotonase_core	-	no_errors	ECHDC3	HGNC	ENSG00000134463	40	0	0.00	30	4	11.76	-	-	-
EIF2AK3	0	genome.wustl.edu	37	2	88889973	88889973	+	Missense_Mutation	SNP	T	T	G			TCGA-A2-A0CO-01A-13D-A228-09	TCGA-A2-A0CO-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	36053173-6839-43ec-8157-75d729085e6b	fea38127-979d-4085-a9e1-6965b99458f3	2	88889973	88889973	T	G	SNP	EIF2AK3	ENST00000303236	human	ensembl	69_37n	-1	known	missense	c.1153	p.S385R	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Quinonprotein_ADH-like,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	EIF2AK3	HGNC	ENSG00000172071	41	0	0.00	20	6	23.08	-	-	-
ELFN2	0	genome.wustl.edu	37	22	37769141	37769141	+	Missense_Mutation	SNP	T	T	C			TCGA-A2-A0CO-01A-13D-A228-09	TCGA-A2-A0CO-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	36053173-6839-43ec-8157-75d729085e6b	fea38127-979d-4085-a9e1-6965b99458f3	22	37769141	37769141	T	C	SNP	ELFN2	ENST00000349653	human	ensembl	69_37n	-1	known	missense	c.2434	p.K812E	1.000	NULL	superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,pfscan_LPXTG-motif_cell_wall_anchor	-	no_errors	ELFN2	HGNC	ENSG00000166897	58	0	0.00	46	26	36.11	-	-	-
FAM26F	0	genome.wustl.edu	37	6	116784535	116784535	+	Silent	SNP	G	G	A			TCGA-A2-A0CO-01A-13D-A228-09	TCGA-A2-A0CO-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	36053173-6839-43ec-8157-75d729085e6b	fea38127-979d-4085-a9e1-6965b99458f3	6	116784535	116784535	G	A	SNP	FAM26F	ENST00000368605	human	ensembl	69_37n	+1	known	silent	c.615	p.L205	0.886	NULL	NULL	-	no_errors	FAM26F	HGNC	ENSG00000188820	81	0	0.00	63	12	16.00	-	-	-
FLNC	0	genome.wustl.edu	37	7	128496897	128496897	+	Missense_Mutation	SNP	C	C	T			TCGA-A2-A0CO-01A-13D-A228-09	TCGA-A2-A0CO-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	36053173-6839-43ec-8157-75d729085e6b	fea38127-979d-4085-a9e1-6965b99458f3	7	128496897	128496897	C	T	SNP	FLNC	ENST00000325888	human	ensembl	69_37n	+1	known	missense	c.7483	p.R2495C	1.000	superfamily_Ig_E-set,smart_Filamin,pfscan_Filamin/ABP280_repeat-like	pfam_Filamin/ABP280_repeat-like,pfam_CH-domain,superfamily_CH-domain,superfamily_Ig_E-set,smart_CH-domain,smart_Filamin,pfscan_CH-domain,pfscan_Filamin/ABP280_repeat-like	-	no_errors	FLNC	HGNC	ENSG00000128591	47	0	0.00	38	6	13.64	-	-	-
GIMAP8	0	genome.wustl.edu	37	7	150164191	150164191	+	Silent	SNP	G	G	T			TCGA-A2-A0CO-01A-13D-A228-09	TCGA-A2-A0CO-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	36053173-6839-43ec-8157-75d729085e6b	fea38127-979d-4085-a9e1-6965b99458f3	7	150164191	150164191	G	T	SNP	GIMAP8	ENST00000307271	human	ensembl	69_37n	+1	known	silent	c.405	p.R135	0.006	pfam_AIG1	pfam_AIG1	-	no_errors	GIMAP8	HGNC	ENSG00000171115	26	0	0.00	38	5	11.63	-	-	-
GOLGA6L10	0	genome.wustl.edu	37	15	82635183	82635183	+	Missense_Mutation	SNP	A	A	C			TCGA-A2-A0CO-01A-13D-A228-09	TCGA-A2-A0CO-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	36053173-6839-43ec-8157-75d729085e6b	fea38127-979d-4085-a9e1-6965b99458f3	15	82635183	82635183	A	C	SNP	GOLGA6L10	ENST00000439287	human	ensembl	69_37n	-1	known	missense	c.1387	p.C463G	0.264	NULL	NULL	-	no_errors	GOLGA6L10	HGNC	ENSG00000205281	33	0	0.00	66	8	10.81	-	-	-
ITIH2	0	genome.wustl.edu	37	10	7773953	7773953	+	Silent	SNP	G	G	A			TCGA-A2-A0CO-01A-13D-A228-09	TCGA-A2-A0CO-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	36053173-6839-43ec-8157-75d729085e6b	fea38127-979d-4085-a9e1-6965b99458f3	10	7773953	7773953	G	A	SNP	ITIH2	ENST00000358415	human	ensembl	69_37n	+1	known	silent	c.1641	p.A547	0.000	NULL	pfam_ITI_HC_C,pfam_VIT,pfam_VWF_A,smart_VIT,smart_VWF_A,pfscan_VWF_A	-	no_errors	ITIH2	HGNC	ENSG00000151655	14	0	0.00	15	4	21.05	-	-	-
KCNN3	0	genome.wustl.edu	37	1	154842330	154842330	+	Silent	SNP	T	T	C			TCGA-A2-A0CO-01A-13D-A228-09	TCGA-A2-A0CO-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	36053173-6839-43ec-8157-75d729085e6b	fea38127-979d-4085-a9e1-6965b99458f3	1	154842330	154842330	T	C	SNP	KCNN3	ENST00000271915	human	ensembl	69_37n	-1	known	silent	c.111	p.Q37	0.893	NULL	pfam_K_chnl_Ca-activ_SK,pfam_CaM-bd_dom,pfam_Ion_trans_2,superfamily_CaM-bd_dom,prints_K_chnl_Ca-activ_SK	-	no_errors	KCNN3	HGNC	ENSG00000143603	40	0	0.00	84	10	10.64	-	-	-
MASP1	0	genome.wustl.edu	37	3	186953629	186953629	+	Missense_Mutation	SNP	C	C	T			TCGA-A2-A0CO-01A-13D-A228-09	TCGA-A2-A0CO-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	36053173-6839-43ec-8157-75d729085e6b	fea38127-979d-4085-a9e1-6965b99458f3	3	186953629	186953629	C	T	SNP	MASP1	ENST00000296280	human	ensembl	69_37n	-1	known	missense	c.2030	p.R677H	0.988	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6	pfam_Peptidase_S1_S6,pfam_CUB,pfam_Sushi_SCR_CCP,pfam_EGF-like_Ca-bd,superfamily_Pept_cys/ser_Trypsin-like,superfamily_CUB,superfamily_Complement_control_module,smart_CUB,smart_EGF-like_Ca-bd,smart_Sushi_SCR_CCP,smart_Peptidase_S1_S6,prints_Peptidase_S1A,pfscan_CUB,pfscan_Sushi_SCR_CCP,pfscan_Peptidase_S1_S6	-	no_errors	MASP1	HGNC	ENSG00000127241	28	0	0.00	25	6	19.35	-	-	-
MLL2	0	genome.wustl.edu	37	12	49443899	49443899	+	Nonsense_Mutation	SNP	C	C	A			TCGA-A2-A0CO-01A-13D-A228-09	TCGA-A2-A0CO-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	36053173-6839-43ec-8157-75d729085e6b	fea38127-979d-4085-a9e1-6965b99458f3	12	49443899	49443899	C	A	SNP	MLL2	ENST00000301067	human	ensembl	69_37n	-1	known	nonsense	c.3472	p.E1158*	1.000	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Znf_RING,smart_HMG_superfamily,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	MLL2	HGNC	ENSG00000167548	32	0	0.00	46	7	13.21	-	-	-
NCOR1	0	genome.wustl.edu	37	17	15973687	15973688	+	Frame_Shift_Del	DEL	AT	AT	-			TCGA-A2-A0CO-01A-13D-A228-09	TCGA-A2-A0CO-10A-01D-A22A-09	AT	AT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	36053173-6839-43ec-8157-75d729085e6b	fea38127-979d-4085-a9e1-6965b99458f3	17	15973687	15973688	AT	-	DEL	NCOR1	ENST00000268712	human	ensembl	69_37n	-1	known	frame_shift_del	c.4305_4304	p.Y1435fs	0.288:0.998	NULL	pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	NCOR1	HGNC	ENSG00000141027	50	0	0.00	25	15	35.71	-	-	-
PDE4DIP	0	genome.wustl.edu	37	1	145039922	145039922	+	RNA	SNP	G	G	C			TCGA-A2-A0CO-01A-13D-A228-09	TCGA-A2-A0CO-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	36053173-6839-43ec-8157-75d729085e6b	fea38127-979d-4085-a9e1-6965b99458f3	1	145039922	145039922	G	C	SNP	PDE4DIP	ENST00000497529	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.016	-	-	-	no_errors	PDE4DIP	HGNC	ENSG00000178104	9	0	0.00	10	4	28.57	-	-	-
PITX1	0	genome.wustl.edu	37	5	134364708	134364708	+	Missense_Mutation	SNP	C	C	T			TCGA-A2-A0CO-01A-13D-A228-09	TCGA-A2-A0CO-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	36053173-6839-43ec-8157-75d729085e6b	fea38127-979d-4085-a9e1-6965b99458f3	5	134364708	134364708	C	T	SNP	PITX1	ENST00000265340	human	ensembl	69_37n	-1	known	missense	c.706	p.G236S	1.000	pirsf_Homeobox_Pitx/unc30	pfam_Homeodomain,pfam_OAR_dom,superfamily_Homeodomain-like,smart_Homeodomain,pirsf_Homeobox_Pitx/unc30,pfscan_OAR_dom,pfscan_Homeodomain	-	no_errors	PITX1	HGNC	ENSG00000069011	83	0	0.00	62	22	26.19	-	-	-
POU3F2	0	genome.wustl.edu	37	6	99283859	99283859	+	Missense_Mutation	SNP	G	G	C			TCGA-A2-A0CO-01A-13D-A228-09	TCGA-A2-A0CO-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	36053173-6839-43ec-8157-75d729085e6b	fea38127-979d-4085-a9e1-6965b99458f3	6	99283859	99283859	G	C	SNP	POU3F2	ENST00000328345	human	ensembl	69_37n	+1	known	missense	c.1110	p.E370D	1.000	pirsf_Transcription_factor_POU,pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_POU	pirsf_Transcription_factor_POU,pfam_POU_specific,pfam_Homeodomain,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_POU_specific,smart_Homeodomain,pfscan_Homeodomain,pfscan_POU_specific,prints_POU	-	no_errors	POU3F2	HGNC	ENSG00000184486	40	0	0.00	23	4	14.81	-	-	-
PRKAA1	0	genome.wustl.edu	37	5	40763109	40763109	+	Missense_Mutation	SNP	G	G	T			TCGA-A2-A0CO-01A-13D-A228-09	TCGA-A2-A0CO-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	36053173-6839-43ec-8157-75d729085e6b	fea38127-979d-4085-a9e1-6965b99458f3	5	40763109	40763109	G	T	SNP	PRKAA1	ENST00000354209	human	ensembl	69_37n	-1	known	missense	c.1496	p.A499D	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Kinase-assoc_KA1,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	PRKAA1	HGNC	ENSG00000132356	29	0	0.00	23	4	14.81	-	-	-
PRKCG	0	genome.wustl.edu	37	19	54403868	54403868	+	Silent	SNP	C	C	T			TCGA-A2-A0CO-01A-13D-A228-09	TCGA-A2-A0CO-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	36053173-6839-43ec-8157-75d729085e6b	fea38127-979d-4085-a9e1-6965b99458f3	19	54403868	54403868	C	T	SNP	PRKCG	ENST00000540413	human	ensembl	69_37n	+1	known	silent	c.1440	p.D480	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Protein_kinase_C_a/b/g,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_C2_Ca-dep,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_C2_Ca-dep,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Protein_kinase_C_a/b/g,pfscan_C2_membr_targeting,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom,prints_DAG/PE-bd,prints_C2_dom	-	no_errors	PRKCG	HGNC	ENSG00000126583	36	0	0.00	42	6	12.50	-	-	-
SCN4A	0	genome.wustl.edu	37	17	62045591	62045591	+	Silent	SNP	C	C	T			TCGA-A2-A0CO-01A-13D-A228-09	TCGA-A2-A0CO-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	36053173-6839-43ec-8157-75d729085e6b	fea38127-979d-4085-a9e1-6965b99458f3	17	62045591	62045591	C	T	SNP	SCN4A	ENST00000435607	human	ensembl	69_37n	-1	known	silent	c.828	p.L276	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_PKD1_2_channel,prints_Na_channel_a4su,prints_Na_channel_asu,prints_PKD_2,pfscan_IQ_motif_EF-hand-BS	-	no_errors	SCN4A	HGNC	ENSG00000007314	42	0	0.00	49	20	28.99	-	-	-
SLC29A1	0	genome.wustl.edu	37	6	44197966	44197966	+	RNA	DEL	G	G	-			TCGA-A2-A0CO-01A-13D-A228-09	TCGA-A2-A0CO-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	36053173-6839-43ec-8157-75d729085e6b	fea38127-979d-4085-a9e1-6965b99458f3	6	44197966	44197966	G	-	DEL	SLC29A1	ENST00000472176	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	SLC29A1	HGNC	ENSG00000112759	40	0	0.00	46	6	11.54	-	-	-
SLC39A13	0	genome.wustl.edu	37	11	47434951	47434952	+	Frame_Shift_Ins	INS	-	-	C			TCGA-A2-A0CO-01A-13D-A228-09	TCGA-A2-A0CO-10A-01D-A22A-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	36053173-6839-43ec-8157-75d729085e6b	fea38127-979d-4085-a9e1-6965b99458f3	11	47434951	47434952	-	C	INS	SLC39A13	ENST00000362021	human	ensembl	69_37n	+1	known	frame_shift_ins	c.538_539	p.N182fs	1.000:1.000	pfam_ZIP	pfam_ZIP	-	no_errors	SLC39A13	HGNC	ENSG00000165915	55	0	0.00	50	9	15.25	-	-	-
SPP1	0	genome.wustl.edu	37	4	88902647	88902647	+	Silent	SNP	C	C	T			TCGA-A2-A0CO-01A-13D-A228-09	TCGA-A2-A0CO-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	36053173-6839-43ec-8157-75d729085e6b	fea38127-979d-4085-a9e1-6965b99458f3	4	88902647	88902647	C	T	SNP	SPP1	ENST00000395080	human	ensembl	69_37n	+1	known	silent	c.237	p.N79	0.082	pfam_Osteopontin,smart_Osteopontin,prints_Osteopontin	pfam_Osteopontin,smart_Osteopontin,prints_Osteopontin	-	no_errors	SPP1	HGNC	ENSG00000118785	29	0	0.00	44	7	13.73	-	-	-
TMEM63B	0	genome.wustl.edu	37	6	44121445	44121445	+	Missense_Mutation	SNP	G	G	A			TCGA-A2-A0CO-01A-13D-A228-09	TCGA-A2-A0CO-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	36053173-6839-43ec-8157-75d729085e6b	fea38127-979d-4085-a9e1-6965b99458f3	6	44121445	44121445	G	A	SNP	TMEM63B	ENST00000259746	human	ensembl	69_37n	+1	known	missense	c.1975	p.D659N	1.000	pfam_DUF221	pfam_DUF221	-	no_errors	TMEM63B	HGNC	ENSG00000137216	44	0	0.00	43	13	23.21	-	-	-
TNS4	0	genome.wustl.edu	37	17	38638409	38638409	+	Silent	SNP	C	C	A			TCGA-A2-A0CO-01A-13D-A228-09	TCGA-A2-A0CO-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	36053173-6839-43ec-8157-75d729085e6b	fea38127-979d-4085-a9e1-6965b99458f3	17	38638409	38638409	C	A	SNP	TNS4	ENST00000254051	human	ensembl	69_37n	-1	known	silent	c.1644	p.L548	1.000	pfscan_SH2	pfam_PTB,pfam_SH2,smart_SH2,smart_PTyr_interaction_dom,pfscan_SH2	-	no_errors	TNS4	HGNC	ENSG00000131746	20	0	0.00	18	4	18.18	-	-	-
TSPAN6	0	genome.wustl.edu	37	X	99891533	99891533	+	RNA	SNP	C	C	T			TCGA-A2-A0CO-01A-13D-A228-09	TCGA-A2-A0CO-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	36053173-6839-43ec-8157-75d729085e6b	fea38127-979d-4085-a9e1-6965b99458f3	X	99891533	99891533	C	T	SNP	TSPAN6	ENST00000496771	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	TSPAN6	HGNC	ENSG00000000003	63	0	0.00	53	6	10.17	-	-	-
XIST	0	genome.wustl.edu	37	X	73070850	73070850	+	RNA	SNP	G	G	T			TCGA-A2-A0CO-01A-13D-A228-09	TCGA-A2-A0CO-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	36053173-6839-43ec-8157-75d729085e6b	fea38127-979d-4085-a9e1-6965b99458f3	X	73070850	73070850	G	T	SNP	XIST	ENST00000429829	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	XIST	HGNC	ENSG00000229807	49	0	0.00	28	14	33.33	-	-	-
ZNF74	0	genome.wustl.edu	37	22	20760662	20760662	+	Missense_Mutation	SNP	G	G	A			TCGA-A2-A0CO-01A-13D-A228-09	TCGA-A2-A0CO-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	36053173-6839-43ec-8157-75d729085e6b	fea38127-979d-4085-a9e1-6965b99458f3	22	20760662	20760662	G	A	SNP	ZNF74	ENST00000356671	human	ensembl	69_37n	+1	known	missense	c.1339	p.A447T	0.002	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF74	HGNC	ENSG00000185252	40	0	0.00	41	16	28.07	-	-	-
