Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
ADAMTS9	0	genome.wustl.edu	37	3	64518862	64518862	+	Missense_Mutation	SNP	A	A	G			TCGA-A2-A1FW-01A-11D-A13L-09	TCGA-A2-A1FW-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ccdb42e-1ad1-4175-b83a-a24b019dc640	c2563fdc-a603-4974-a849-a938ca683f7c	3	64518862	64518862	A	G	SNP	ADAMTS9	ENST00000498707	human	ensembl	69_37n	-1	known	missense	c.5698	p.S1900P	1.000	pfam_Pept_M12B_GON-ADAMTSs,pfscan_Pept_M12B_GON-ADAMTSs	pfam_Pept_M12B_GON-ADAMTSs,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,prints_Peptidase_M12B_ADAM-TS,pfscan_Pept_M12B_GON-ADAMTSs,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B	-	no_errors	ADAMTS9	HGNC	ENSG00000163638	40	0	0.00	92	34	26.98	-	-	-
AIMP1	0	genome.wustl.edu	37	4	107249280	107249280	+	Missense_Mutation	SNP	A	A	G			TCGA-A2-A1FW-01A-11D-A13L-09	TCGA-A2-A1FW-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ccdb42e-1ad1-4175-b83a-a24b019dc640	c2563fdc-a603-4974-a849-a938ca683f7c	4	107249280	107249280	A	G	SNP	AIMP1	ENST00000394701	human	ensembl	69_37n	+1	known	missense	c.343	p.M115V	0.000	NULL	pfam_tRNA-bd_dom,superfamily_NA-bd_OB-fold-like,superfamily_t-SNARE,pfscan_tRNA-bd_dom	-	no_errors	AIMP1	HGNC	ENSG00000164022	69	0	0.00	108	49	31.21	-	-	-
AMDHD2	0	genome.wustl.edu	37	16	2580551	2580551	+	Missense_Mutation	SNP	T	T	A			TCGA-A2-A1FW-01A-11D-A13L-09	TCGA-A2-A1FW-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ccdb42e-1ad1-4175-b83a-a24b019dc640	c2563fdc-a603-4974-a849-a938ca683f7c	16	2580551	2580551	T	A	SNP	AMDHD2	ENST00000413459	human	ensembl	69_37n	+1	known	missense	c.1576	p.W526R	0.019	NULL	pfam_Amidohydro_1,pfam_Amidohydro_3,superfamily_Metal-dep_hydrolase_composite	-	no_errors	AMDHD2	HGNC	ENSG00000162066	51	0	0.00	145	45	23.68	-	-	-
AQP12B	0	genome.wustl.edu	37	2	241621869	241621869	+	Missense_Mutation	SNP	G	G	A			TCGA-A2-A1FW-01A-11D-A13L-09	TCGA-A2-A1FW-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ccdb42e-1ad1-4175-b83a-a24b019dc640	c2563fdc-a603-4974-a849-a938ca683f7c	2	241621869	241621869	G	A	SNP	AQP12B	ENST00000407834	human	ensembl	69_37n	-1	known	missense	c.386	p.T129M	0.017	pfam_MIP,superfamily_Aquaporin-like,pirsf_Aquaporin_11/12,prints_Aquaporin_12	pfam_MIP,superfamily_Aquaporin-like,pirsf_Aquaporin_11/12,prints_Aquaporin_12,prints_MIP	-	no_errors	AQP12B	HGNC	ENSG00000185176	11	0	0.00	3	13	81.25	-	-	-
AQPEP	0	genome.wustl.edu	37	5	115329524	115329524	+	Silent	SNP	T	T	A			TCGA-A2-A1FW-01A-11D-A13L-09	TCGA-A2-A1FW-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ccdb42e-1ad1-4175-b83a-a24b019dc640	c2563fdc-a603-4974-a849-a938ca683f7c	5	115329524	115329524	T	A	SNP	AQPEP	ENST00000357872	human	ensembl	69_37n	+1	known	silent	c.1347	p.I449	0.051	pfam_Peptidase_M1_N	pfam_Peptidase_M1_N,prints_Peptidase_M1_N	-	no_errors	LVRN	Clone_based_vega_gene	ENSG00000172901	56	0	0.00	105	28	21.05	-	-	-
BMP8B	0	genome.wustl.edu	37	1	40230633	40230633	+	Missense_Mutation	SNP	T	T	A			TCGA-A2-A1FW-01A-11D-A13L-09	TCGA-A2-A1FW-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ccdb42e-1ad1-4175-b83a-a24b019dc640	c2563fdc-a603-4974-a849-a938ca683f7c	1	40230633	40230633	T	A	SNP	BMP8B	ENST00000397360	human	ensembl	69_37n	-1	known	missense	c.721	p.M241L	0.658	NULL	pfam_TGF-b_N	-	no_errors	BMP8B	HGNC	ENSG00000116985	8	0	0.00	3	4	57.14	-	-	-
CACHD1	0	genome.wustl.edu	37	1	65157044	65157044	+	Missense_Mutation	SNP	C	C	T			TCGA-A2-A1FW-01A-11D-A13L-09	TCGA-A2-A1FW-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ccdb42e-1ad1-4175-b83a-a24b019dc640	c2563fdc-a603-4974-a849-a938ca683f7c	1	65157044	65157044	C	T	SNP	CACHD1	ENST00000371073	human	ensembl	69_37n	+1	known	missense	c.3625	p.P1209S	1.000	NULL	pfam_VWA_N,pfam_Cache_domain,pfscan_VWF_A	-	no_errors	CACHD1	HGNC	ENSG00000158966	41	0	0.00	62	29	31.87	-	-	-
CACNA1S	0	genome.wustl.edu	37	1	201009077	201009077	+	Missense_Mutation	SNP	C	C	T			TCGA-A2-A1FW-01A-11D-A13L-09	TCGA-A2-A1FW-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ccdb42e-1ad1-4175-b83a-a24b019dc640	c2563fdc-a603-4974-a849-a938ca683f7c	1	201009077	201009077	C	T	SNP	CACNA1S	ENST00000362061	human	ensembl	69_37n	-1	known	missense	c.5504	p.G1835E	0.054	NULL	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCCAlpha1,prints_VDCC_L_a1su,prints_VDCC_L_a1ssu	-	no_errors	CACNA1S	HGNC	ENSG00000081248	60	0	0.00	260	34	11.56	-	-	-
CCDC80	0	genome.wustl.edu	37	3	112326098	112326098	+	Missense_Mutation	SNP	G	G	A			TCGA-A2-A1FW-01A-11D-A13L-09	TCGA-A2-A1FW-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ccdb42e-1ad1-4175-b83a-a24b019dc640	c2563fdc-a603-4974-a849-a938ca683f7c	3	112326098	112326098	G	A	SNP	CCDC80	ENST00000206423	human	ensembl	69_37n	-1	known	missense	c.2431	p.R811C	1.000	NULL	NULL	-	no_errors	CCDC80	HGNC	ENSG00000091986	58	0	0.00	58	22	27.50	-	-	-
CDK5RAP1	0	genome.wustl.edu	37	20	31975264	31975264	+	Missense_Mutation	SNP	G	G	A			TCGA-A2-A1FW-01A-11D-A13L-09	TCGA-A2-A1FW-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ccdb42e-1ad1-4175-b83a-a24b019dc640	c2563fdc-a603-4974-a849-a938ca683f7c	20	31975264	31975264	G	A	SNP	CDK5RAP1	ENST00000357886	human	ensembl	69_37n	-1	known	missense	c.620	p.A207V	1.000	tigrfam_MiaB_methiolase,tigrfam_Methylthiotransferase	pfam_rSAM,pfam_Methylthiotransferase_N,pfam_TRAM_dom,smart_Elp3/MiaB/NifB,pfscan_TRAM_dom,tigrfam_MiaB_methiolase,tigrfam_Methylthiotransferase	-	no_errors	CDK5RAP1	HGNC	ENSG00000101391	16	0	0.00	40	11	21.57	-	-	-
CEL	0	genome.wustl.edu	37	9	135944524	135944524	+	Silent	SNP	C	C	T			TCGA-A2-A1FW-01A-11D-A13L-09	TCGA-A2-A1FW-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ccdb42e-1ad1-4175-b83a-a24b019dc640	c2563fdc-a603-4974-a849-a938ca683f7c	9	135944524	135944524	C	T	SNP	CEL	ENST00000372080	human	ensembl	69_37n	+1	known	silent	c.1173	p.T391	0.000	pfam_CarbesteraseB	pfam_CarbesteraseB,pfam_AB_hydrolase_3	-	no_errors	CEL	HGNC	ENSG00000170835	12	0	0.00	21	9	30.00	-	-	-
CEP152	0	genome.wustl.edu	37	15	49044602	49044602	+	Missense_Mutation	SNP	G	G	T			TCGA-A2-A1FW-01A-11D-A13L-09	TCGA-A2-A1FW-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ccdb42e-1ad1-4175-b83a-a24b019dc640	c2563fdc-a603-4974-a849-a938ca683f7c	15	49044602	49044602	G	T	SNP	CEP152	ENST00000380950	human	ensembl	69_37n	-1	known	missense	c.3410	p.P1137H	0.006	NULL	NULL	-	no_errors	CEP152	HGNC	ENSG00000103995	30	0	0.00	46	41	46.59	-	-	-
CHGA	0	genome.wustl.edu	37	14	93397599	93397599	+	Silent	SNP	G	G	A			TCGA-A2-A1FW-01A-11D-A13L-09	TCGA-A2-A1FW-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ccdb42e-1ad1-4175-b83a-a24b019dc640	c2563fdc-a603-4974-a849-a938ca683f7c	14	93397599	93397599	G	A	SNP	CHGA	ENST00000216492	human	ensembl	69_37n	+1	known	silent	c.360	p.A120	0.000	pfam_Granin	pfam_Granin,prints_Chromogranin_AB	-	no_errors	CHGA	HGNC	ENSG00000100604	19	0	0.00	31	11	26.19	-	-	-
CHRM3	0	genome.wustl.edu	37	1	240071786	240071786	+	Silent	SNP	C	C	A			TCGA-A2-A1FW-01A-11D-A13L-09	TCGA-A2-A1FW-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ccdb42e-1ad1-4175-b83a-a24b019dc640	c2563fdc-a603-4974-a849-a938ca683f7c	1	240071786	240071786	C	A	SNP	CHRM3	ENST00000255380	human	ensembl	69_37n	+1	known	silent	c.1035	p.S345	0.982	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_Musac_M3_rcpt,prints_Musac_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	CHRM3	HGNC	ENSG00000133019	10	0	0.00	28	9	24.32	-	-	-
CNTNAP1	0	genome.wustl.edu	37	17	40837254	40837254	+	Silent	SNP	C	C	T			TCGA-A2-A1FW-01A-11D-A13L-09	TCGA-A2-A1FW-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ccdb42e-1ad1-4175-b83a-a24b019dc640	c2563fdc-a603-4974-a849-a938ca683f7c	17	40837254	40837254	C	T	SNP	CNTNAP1	ENST00000264638	human	ensembl	69_37n	+1	known	silent	c.531	p.F177	0.992	superfamily_ConA-like_lec_gl,pfscan_Laminin_G	pfam_Laminin_G,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_ConA-like_lec_gl,superfamily_Galactose-bd-like,superfamily_Fibrinogen_a/b/g_C,smart_Coagulation_fac_5/8-C_type_dom,smart_Laminin_G,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Laminin_G	-	no_errors	CNTNAP1	HGNC	ENSG00000108797	26	0	0.00	20	15	41.67	-	-	-
COL1A2	0	genome.wustl.edu	37	7	94034183	94034183	+	Silent	SNP	T	T	A			TCGA-A2-A1FW-01A-11D-A13L-09	TCGA-A2-A1FW-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ccdb42e-1ad1-4175-b83a-a24b019dc640	c2563fdc-a603-4974-a849-a938ca683f7c	7	94034183	94034183	T	A	SNP	COL1A2	ENST00000297268	human	ensembl	69_37n	+1	known	silent	c.411	p.P137	1.000	pfam_Collagen	pfam_Collagen,pfam_Fib_collagen_C,superfamily_Fibrinogen_a/b/g_C,smart_Fib_collagen_C	-	no_errors	COL1A2	HGNC	ENSG00000164692	47	0	0.00	41	28	40.58	-	-	-
DISC1	0	genome.wustl.edu	37	1	231885724	231885724	+	Silent	SNP	G	G	T			TCGA-A2-A1FW-01A-11D-A13L-09	TCGA-A2-A1FW-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ccdb42e-1ad1-4175-b83a-a24b019dc640	c2563fdc-a603-4974-a849-a938ca683f7c	1	231885724	231885724	G	T	SNP	DISC1	ENST00000439617	human	ensembl	69_37n	+1	known	silent	c.1170	p.L390	0.869	NULL	superfamily_Prefoldin	-	no_errors	DISC1	HGNC	ENSG00000162946	52	0	0.00	131	29	18.12	-	-	-
DPEP3	0	genome.wustl.edu	37	16	68011676	68011676	+	Silent	SNP	C	C	T			TCGA-A2-A1FW-01A-11D-A13L-09	TCGA-A2-A1FW-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ccdb42e-1ad1-4175-b83a-a24b019dc640	c2563fdc-a603-4974-a849-a938ca683f7c	16	68011676	68011676	C	T	SNP	DPEP3	ENST00000268793	human	ensembl	69_37n	-1	known	silent	c.888	p.S296	0.000	pfam_Peptidase_M19	pfam_Peptidase_M19	-	no_errors	DPEP3	HGNC	ENSG00000141096	31	0	0.00	84	19	18.10	-	-	-
DUOX1	0	genome.wustl.edu	37	15	45448061	45448061	+	Missense_Mutation	SNP	C	C	A			TCGA-A2-A1FW-01A-11D-A13L-09	TCGA-A2-A1FW-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ccdb42e-1ad1-4175-b83a-a24b019dc640	c2563fdc-a603-4974-a849-a938ca683f7c	15	45448061	45448061	C	A	SNP	DUOX1	ENST00000321429	human	ensembl	69_37n	+1	known	missense	c.3636	p.H1212Q	1.000	pfam_Fe3_Rdtase_TM_dom	pfam_Haem_peroxidase_animal,pfam_Fe_red_NAD-bd_6,pfam_FAD-bd_8,pfam_Fe3_Rdtase_TM_dom,pfam_EF-hand,superfamily_Haem_peroxidase,superfamily_Riboflavin_synthase-like_b-brl,smart_EF_hand_Ca-bd,prints_Haem_peroxidase_animal_subgr,prints_Recoverin,pfscan_EF_HAND_2,pfscan_Haem_peroxidase_animal	-	no_errors	DUOX1	HGNC	ENSG00000137857	78	0	0.00	186	66	26.19	-	-	-
FAM71D	0	genome.wustl.edu	37	14	67671595	67671595	+	Missense_Mutation	SNP	T	T	G			TCGA-A2-A1FW-01A-11D-A13L-09	TCGA-A2-A1FW-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ccdb42e-1ad1-4175-b83a-a24b019dc640	c2563fdc-a603-4974-a849-a938ca683f7c	14	67671595	67671595	T	G	SNP	FAM71D	ENST00000311864	human	ensembl	69_37n	+1	known	missense	c.701	p.F234C	1.000	NULL	pfam_DUF3699	-	no_errors	FAM71D	HGNC	ENSG00000172717	32	0	0.00	53	10	15.62	-	-	-
FCGBP	0	genome.wustl.edu	37	19	40383905	40383905	+	Silent	SNP	G	G	A			TCGA-A2-A1FW-01A-11D-A13L-09	TCGA-A2-A1FW-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ccdb42e-1ad1-4175-b83a-a24b019dc640	c2563fdc-a603-4974-a849-a938ca683f7c	19	40383905	40383905	G	A	SNP	FCGBP	ENST00000221347	human	ensembl	69_37n	-1	known	silent	c.9705	p.C3235	0.488	smart_VWC_out	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_Fol_N,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EGF-like,smart_VWF_C,smart_VWC_out	-	no_errors	FCGBP	HGNC	ENSG00000090920	12	0	0.00	19	14	42.42	-	-	-
GLI2	0	genome.wustl.edu	37	2	121729565	121729565	+	Missense_Mutation	SNP	G	G	A			TCGA-A2-A1FW-01A-11D-A13L-09	TCGA-A2-A1FW-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ccdb42e-1ad1-4175-b83a-a24b019dc640	c2563fdc-a603-4974-a849-a938ca683f7c	2	121729565	121729565	G	A	SNP	GLI2	ENST00000361492	human	ensembl	69_37n	+1	known	missense	c.1108	p.A370T	0.303	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	GLI2	HGNC	ENSG00000074047	18	0	0.00	35	17	32.08	-	-	-
HECTD1	0	genome.wustl.edu	37	14	31605749	31605749	+	Nonsense_Mutation	SNP	G	G	C			TCGA-A2-A1FW-01A-11D-A13L-09	TCGA-A2-A1FW-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ccdb42e-1ad1-4175-b83a-a24b019dc640	c2563fdc-a603-4974-a849-a938ca683f7c	14	31605749	31605749	G	C	SNP	HECTD1	ENST00000399332	human	ensembl	69_37n	-1	known	nonsense	c.3102	p.Y1034*	1.000	NULL	pfam_HECT,pfam_Sad1_UNC_C,pfam_Mib_Herc2,pfam_Ankyrin_rpt,superfamily_HECT,superfamily_Ankyrin_rpt-contain_dom,superfamily_ARM-type_fold,superfamily_Galactose-bd-like,smart_Ankyrin_rpt,smart_HECT,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_HECT	-	no_errors	HECTD1	HGNC	ENSG00000092148	75	0	0.00	155	40	20.51	-	-	-
HUWE1	0	genome.wustl.edu	37	X	53652126	53652126	+	Missense_Mutation	SNP	A	A	G			TCGA-A2-A1FW-01A-11D-A13L-09	TCGA-A2-A1FW-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ccdb42e-1ad1-4175-b83a-a24b019dc640	c2563fdc-a603-4974-a849-a938ca683f7c	X	53652126	53652126	A	G	SNP	HUWE1	ENST00000262854	human	ensembl	69_37n	-1	known	missense	c.1583	p.I528T	1.000	pfam_E3_Ub_ligase_DUF913,superfamily_ARM-type_fold	pfam_E3_Ub_ligase_DUF913,pfam_HECT,pfam_E3_Ub_ligase_DUF908,pfam_WWE-dom,pfam_UBA/transl_elong_EF1B_N,superfamily_HECT,superfamily_UBA-like,superfamily_ARM-type_fold,smart_UBA/transl_elong_EF1B_N_euk,smart_HECT,pfscan_HECT,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_WWE-dom	-	no_errors	HUWE1	HGNC	ENSG00000086758	62	0	0.00	149	31	17.22	-	-	-
IGLV3-22	0	genome.wustl.edu	37	22	23047214	23047214	+	Silent	SNP	C	C	T			TCGA-A2-A1FW-01A-11D-A13L-09	TCGA-A2-A1FW-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ccdb42e-1ad1-4175-b83a-a24b019dc640	c2563fdc-a603-4974-a849-a938ca683f7c	22	23047214	23047214	C	T	SNP	IGLV3-22	ENST00000390307	human	ensembl	69_37n	+1	known	silent	c.252	p.T84	0.983	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like	-	no_stop_codon	IGLV3-22	HGNC	ENSG00000211661	19	0	0.00	23	12	34.29	-	-	-
JAK3	0	genome.wustl.edu	37	19	17937697	17937697	+	Missense_Mutation	SNP	C	C	A			TCGA-A2-A1FW-01A-11D-A13L-09	TCGA-A2-A1FW-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ccdb42e-1ad1-4175-b83a-a24b019dc640	c2563fdc-a603-4974-a849-a938ca683f7c	19	17937697	17937697	C	A	SNP	JAK3	ENST00000458235	human	ensembl	69_37n	-1	known	missense	c.3230	p.C1077F	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2,pfscan_Prot_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_FERM_central,smart_Band_41_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2,prints_Tyr_kinase_non-rcpt_Jak/Tyk2,prints_Tyr_kinase_non-rcpt_Jak3,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_FERM_domain,pfscan_Prot_kinase_cat_dom	-	no_errors	JAK3	HGNC	ENSG00000105639	22	0	0.00	32	8	20.00	-	-	-
KIAA1109	0	genome.wustl.edu	37	4	123111228	123111228	+	Nonsense_Mutation	SNP	G	G	T			TCGA-A2-A1FW-01A-11D-A13L-09	TCGA-A2-A1FW-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ccdb42e-1ad1-4175-b83a-a24b019dc640	c2563fdc-a603-4974-a849-a938ca683f7c	4	123111228	123111228	G	T	SNP	KIAA1109	ENST00000264501	human	ensembl	69_37n	+1	known	nonsense	c.895	p.E299*	1.000	NULL	pfam_Fragile_site-assoc_C	-	no_errors	KIAA1109	HGNC	ENSG00000138688	74	0	0.00	135	40	22.73	-	-	-
KRT6B	0	genome.wustl.edu	37	12	52844400	52844400	+	Missense_Mutation	SNP	C	C	T			TCGA-A2-A1FW-01A-11D-A13L-09	TCGA-A2-A1FW-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ccdb42e-1ad1-4175-b83a-a24b019dc640	c2563fdc-a603-4974-a849-a938ca683f7c	12	52844400	52844400	C	T	SNP	KRT6B	ENST00000252252	human	ensembl	69_37n	-1	known	missense	c.545	p.R182Q	0.986	pfam_F	pfam_F,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	KRT6B	HGNC	ENSG00000185479	68	0	0.00	160	64	28.57	-	-	-
KRTAP6-3	0	genome.wustl.edu	37	21	31965011	31965011	+	Missense_Mutation	SNP	G	G	A			TCGA-A2-A1FW-01A-11D-A13L-09	TCGA-A2-A1FW-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ccdb42e-1ad1-4175-b83a-a24b019dc640	c2563fdc-a603-4974-a849-a938ca683f7c	21	31965011	31965011	G	A	SNP	KRTAP6-3	ENST00000391624	human	ensembl	69_37n	+1	known	missense	c.226	p.G76S	1.000	NULL	NULL	-	no_errors	KRTAP6-3	HGNC	ENSG00000212938	155	0	0.00	185	65	25.90	-	-	-
LDB3	0	genome.wustl.edu	37	10	88476372	88476372	+	Missense_Mutation	SNP	C	C	T			TCGA-A2-A1FW-01A-11D-A13L-09	TCGA-A2-A1FW-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ccdb42e-1ad1-4175-b83a-a24b019dc640	c2563fdc-a603-4974-a849-a938ca683f7c	10	88476372	88476372	C	T	SNP	LDB3	ENST00000429277	human	ensembl	69_37n	+1	known	missense	c.1535	p.T512I	0.996	NULL	pfam_Znf_LIM,pfam_PDZ,superfamily_PDZ,smart_PDZ,smart_ZASP,smart_Znf_LIM,pfscan_Znf_LIM,pfscan_PDZ	-	no_errors	LDB3	HGNC	ENSG00000122367	17	0	0.00	59	15	19.74	-	-	-
MEGF8	0	genome.wustl.edu	37	19	42855839	42855839	+	Silent	SNP	C	C	T			TCGA-A2-A1FW-01A-11D-A13L-09	TCGA-A2-A1FW-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ccdb42e-1ad1-4175-b83a-a24b019dc640	c2563fdc-a603-4974-a849-a938ca683f7c	19	42855839	42855839	C	T	SNP	MEGF8	ENST00000251268	human	ensembl	69_37n	+1	known	silent	c.3027	p.F1009	0.993	pfam_Plexin_repeat,superfamily_Plexin-like_fold,smart_Plexin-like	pfam_CUB,pfam_EGF_laminin,pfam_Plexin_repeat,superfamily_Gal_Oxase/kelch_b-propeller,superfamily_CUB,superfamily_Plexin-like_fold,smart_CUB,smart_EGF-like,smart_Plexin-like,smart_EGF-like_Ca-bd,smart_EGF_laminin,pfscan_CUB,pfscan_EG-like_dom,pfscan_EGF_laminin	-	no_errors	MEGF8	HGNC	ENSG00000105429	15	0	0.00	23	21	47.73	-	-	-
MRC2	0	genome.wustl.edu	37	17	60768334	60768334	+	Missense_Mutation	SNP	A	A	G			TCGA-A2-A1FW-01A-11D-A13L-09	TCGA-A2-A1FW-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ccdb42e-1ad1-4175-b83a-a24b019dc640	c2563fdc-a603-4974-a849-a938ca683f7c	17	60768334	60768334	A	G	SNP	MRC2	ENST00000303375	human	ensembl	69_37n	+1	known	missense	c.4037	p.N1346S	1.000	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pfam_C-type_lectin,pfam_FN_type2_col-bd,pfam_Herpes_UL45-like,superfamily_C-type_lectin_fold,superfamily_Ricin_B_lectin,superfamily_Kringle-like,smart_Ricin_B_lectin,smart_FN_type2_col-bd,smart_C-type_lectin,prints_AntifreezeII,pfscan_FN_type2_col-bd,pfscan_C-type_lectin,pfscan_Ricin_B_lectin	-	no_errors	MRC2	HGNC	ENSG00000011028	20	0	0.00	55	9	14.06	-	-	-
MUC17	0	genome.wustl.edu	37	7	100684336	100684336	+	Silent	SNP	A	A	G			TCGA-A2-A1FW-01A-11D-A13L-09	TCGA-A2-A1FW-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ccdb42e-1ad1-4175-b83a-a24b019dc640	c2563fdc-a603-4974-a849-a938ca683f7c	7	100684336	100684336	A	G	SNP	MUC17	ENST00000306151	human	ensembl	69_37n	+1	known	silent	c.9639	p.P3213	0.493	NULL	pfam_SEA,smart_SEA,pfscan_EG-like_dom,pfscan_SEA	-	no_errors	MUC17	HGNC	ENSG00000169876	150	0	0.00	141	76	35.02	-	-	-
MYO5A	0	genome.wustl.edu	37	15	52643662	52643662	+	Nonsense_Mutation	SNP	G	G	T			TCGA-A2-A1FW-01A-11D-A13L-09	TCGA-A2-A1FW-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ccdb42e-1ad1-4175-b83a-a24b019dc640	c2563fdc-a603-4974-a849-a938ca683f7c	15	52643662	52643662	G	T	SNP	MYO5A	ENST00000358212	human	ensembl	69_37n	-1	known	nonsense	c.3638	p.S1213*	1.000	NULL	pfam_Myosin_head_motor_dom,pfam_Dil_domain,pfam_IQ_motif_EF-hand-BS,superfamily_Skp1_comp_dimer,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_Dilute,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO5A	HGNC	ENSG00000197535	95	0	0.00	181	53	22.65	-	-	-
NCKAP1	0	genome.wustl.edu	37	2	183847589	183847589	+	Missense_Mutation	SNP	C	C	A			TCGA-A2-A1FW-01A-11D-A13L-09	TCGA-A2-A1FW-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ccdb42e-1ad1-4175-b83a-a24b019dc640	c2563fdc-a603-4974-a849-a938ca683f7c	2	183847589	183847589	C	A	SNP	NCKAP1	ENST00000360982	human	ensembl	69_37n	-1	known	missense	c.1186	p.D396Y	1.000	pfam_Nck-associated_protein-1	pfam_Nck-associated_protein-1	-	no_errors	NCKAP1	HGNC	ENSG00000061676	53	0	0.00	95	27	22.13	-	-	-
NIPAL1	0	genome.wustl.edu	37	4	48038079	48038079	+	Missense_Mutation	SNP	G	G	A			TCGA-A2-A1FW-01A-11D-A13L-09	TCGA-A2-A1FW-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ccdb42e-1ad1-4175-b83a-a24b019dc640	c2563fdc-a603-4974-a849-a938ca683f7c	4	48038079	48038079	G	A	SNP	NIPAL1	ENST00000295461	human	ensembl	69_37n	+1	known	missense	c.1123	p.A375T	0.003	NULL	pfam_Mg_trans_NIPA,pfam_DMT	-	no_errors	NIPAL1	HGNC	ENSG00000163293	46	0	0.00	56	27	32.53	-	-	-
NR1D2	0	genome.wustl.edu	37	3	24003871	24003871	+	Silent	SNP	C	C	T			TCGA-A2-A1FW-01A-11D-A13L-09	TCGA-A2-A1FW-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ccdb42e-1ad1-4175-b83a-a24b019dc640	c2563fdc-a603-4974-a849-a938ca683f7c	3	24003871	24003871	C	T	SNP	NR1D2	ENST00000312521	human	ensembl	69_37n	+1	known	silent	c.921	p.S307	1.000	NULL	pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt	-	no_errors	NR1D2	HGNC	ENSG00000174738	47	0	0.00	70	25	26.04	-	-	-
NUDCD1	0	genome.wustl.edu	37	8	110287602	110287602	+	Missense_Mutation	SNP	C	C	G			TCGA-A2-A1FW-01A-11D-A13L-09	TCGA-A2-A1FW-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ccdb42e-1ad1-4175-b83a-a24b019dc640	c2563fdc-a603-4974-a849-a938ca683f7c	8	110287602	110287602	C	G	SNP	NUDCD1	ENST00000239690	human	ensembl	69_37n	-1	known	missense	c.1152	p.M384I	1.000	NULL	pfam_CS_domain,superfamily_HSP20-like_chaperone,pfscan_CS-like_domain	-	no_errors	NUDCD1	HGNC	ENSG00000120526	65	0	0.00	261	119	31.32	-	-	-
ODF3L2	0	genome.wustl.edu	37	19	463919	463919	+	Silent	SNP	C	C	T			TCGA-A2-A1FW-01A-11D-A13L-09	TCGA-A2-A1FW-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ccdb42e-1ad1-4175-b83a-a24b019dc640	c2563fdc-a603-4974-a849-a938ca683f7c	19	463919	463919	C	T	SNP	ODF3L2	ENST00000315489	human	ensembl	69_37n	-1	known	silent	c.795	p.S265	0.002	NULL	pfam_SHIPPO-rpt	-	no_errors	ODF3L2	HGNC	ENSG00000181781	22	0	0.00	15	17	53.12	-	-	-
OR1A1	0	genome.wustl.edu	37	17	3119269	3119269	+	Missense_Mutation	SNP	G	G	A			TCGA-A2-A1FW-01A-11D-A13L-09	TCGA-A2-A1FW-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ccdb42e-1ad1-4175-b83a-a24b019dc640	c2563fdc-a603-4974-a849-a938ca683f7c	17	3119269	3119269	G	A	SNP	OR1A1	ENST00000304094	human	ensembl	69_37n	+1	known	missense	c.355	p.A119T	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR1A1	HGNC	ENSG00000172146	93	0	0.00	95	43	31.16	-	-	-
OR2G2	0	genome.wustl.edu	37	1	247752384	247752384	+	Silent	SNP	C	C	T			TCGA-A2-A1FW-01A-11D-A13L-09	TCGA-A2-A1FW-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ccdb42e-1ad1-4175-b83a-a24b019dc640	c2563fdc-a603-4974-a849-a938ca683f7c	1	247752384	247752384	C	T	SNP	OR2G2	ENST00000320065	human	ensembl	69_37n	+1	known	silent	c.723	p.F241	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2G2	HGNC	ENSG00000177489	69	0	0.00	158	20	11.24	-	-	-
PAK7	0	genome.wustl.edu	37	20	9561437	9561437	+	Silent	SNP	G	G	A			TCGA-A2-A1FW-01A-11D-A13L-09	TCGA-A2-A1FW-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ccdb42e-1ad1-4175-b83a-a24b019dc640	c2563fdc-a603-4974-a849-a938ca683f7c	20	9561437	9561437	G	A	SNP	PAK7	ENST00000353224	human	ensembl	69_37n	-1	known	silent	c.345	p.H115	0.016	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PAK_box_Rho-bd,superfamily_Kinase-like_dom,smart_PAK_box_Rho-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_PAK_box_Rho-bd,pfscan_Prot_kinase_cat_dom	-	no_errors	PAK7	HGNC	ENSG00000101349	59	0	0.00	101	33	24.63	-	-	-
PCNXL4	0	genome.wustl.edu	37	14	60591901	60591901	+	Silent	SNP	T	T	G			TCGA-A2-A1FW-01A-11D-A13L-09	TCGA-A2-A1FW-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ccdb42e-1ad1-4175-b83a-a24b019dc640	c2563fdc-a603-4974-a849-a938ca683f7c	14	60591901	60591901	T	G	SNP	PCNXL4	ENST00000404681	human	ensembl	69_37n	+1	known	silent	c.3012	p.P1004	0.938	pfam_Pecanex	pfam_Pecanex	-	no_errors	PCNXL4	HGNC	ENSG00000126773	62	0	0.00	63	18	21.95	-	-	-
PIGA	0	genome.wustl.edu	37	X	15349901	15349901	+	Missense_Mutation	SNP	C	C	T			TCGA-A2-A1FW-01A-11D-A13L-09	TCGA-A2-A1FW-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ccdb42e-1ad1-4175-b83a-a24b019dc640	c2563fdc-a603-4974-a849-a938ca683f7c	X	15349901	15349901	C	T	SNP	PIGA	ENST00000333590	human	ensembl	69_37n	-1	known	missense	c.152	p.S51N	1.000	NULL	pfam_PIGA_GPI_anchor_biosynthesis,pfam_Glyco_trans_1	-	no_errors	PIGA	HGNC	ENSG00000165195	46	0	0.00	88	60	40.54	-	-	-
PLIN4	0	genome.wustl.edu	37	19	4511750	4511750	+	Missense_Mutation	SNP	G	G	A			TCGA-A2-A1FW-01A-11D-A13L-09	TCGA-A2-A1FW-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ccdb42e-1ad1-4175-b83a-a24b019dc640	c2563fdc-a603-4974-a849-a938ca683f7c	19	4511750	4511750	G	A	SNP	PLIN4	ENST00000301286	human	ensembl	69_37n	-1	novel	missense	c.2180	p.A727V	0.000	NULL	pfam_Perilipin,superfamily_Ankyrin_rpt-contain_dom	-	no_errors	PLIN4	HGNC	ENSG00000167676	95	0	0.00	177	29	14.08	-	-	-
POLR2B	0	genome.wustl.edu	37	4	57876368	57876368	+	Splice_Site	SNP	T	T	G			TCGA-A2-A1FW-01A-11D-A13L-09	TCGA-A2-A1FW-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ccdb42e-1ad1-4175-b83a-a24b019dc640	c2563fdc-a603-4974-a849-a938ca683f7c	4	57876368	57876368	T	G	SNP	POLR2B	ENST00000510355	human	ensembl	69_37n	+1	known	splice_site	c.NULL	NULL	0.001	-	-	-	no_errors	POLR2B	HGNC	ENSG00000047315	12	0	0.00	4	14	77.78	-	-	-
PREX2	0	genome.wustl.edu	37	8	69011939	69011939	+	Missense_Mutation	SNP	G	G	A			TCGA-A2-A1FW-01A-11D-A13L-09	TCGA-A2-A1FW-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ccdb42e-1ad1-4175-b83a-a24b019dc640	c2563fdc-a603-4974-a849-a938ca683f7c	8	69011939	69011939	G	A	SNP	PREX2	ENST00000288368	human	ensembl	69_37n	+1	known	missense	c.2576	p.S859N	1.000	NULL	pfam_DH-domain,pfam_DEP_dom,pfam_PDZ,superfamily_DH-domain,superfamily_PDZ,smart_DH-domain,smart_Pleckstrin_homology,smart_DEP_dom,smart_PDZ,pfscan_DEP_dom,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PREX2	HGNC	ENSG00000046889	66	0	0.00	198	38	16.10	-	-	-
RFX1	0	genome.wustl.edu	37	19	14076542	14076542	+	Missense_Mutation	SNP	A	A	C			TCGA-A2-A1FW-01A-11D-A13L-09	TCGA-A2-A1FW-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ccdb42e-1ad1-4175-b83a-a24b019dc640	c2563fdc-a603-4974-a849-a938ca683f7c	19	14076542	14076542	A	C	SNP	RFX1	ENST00000254325	human	ensembl	69_37n	-1	known	missense	c.2009	p.L670R	1.000	NULL	pfam_RFX1_trans_act,pfam_DNA-bd_RFX	-	no_errors	RFX1	HGNC	ENSG00000132005	29	0	0.00	57	23	28.75	-	-	-
SART1	0	genome.wustl.edu	37	11	65744012	65744012	+	Silent	SNP	C	C	T			TCGA-A2-A1FW-01A-11D-A13L-09	TCGA-A2-A1FW-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ccdb42e-1ad1-4175-b83a-a24b019dc640	c2563fdc-a603-4974-a849-a938ca683f7c	11	65744012	65744012	C	T	SNP	SART1	ENST00000312397	human	ensembl	69_37n	+1	known	silent	c.1719	p.G573	0.999	pfam_SART_1	pfam_SART_1	-	no_errors	SART1	HGNC	ENSG00000175467	14	0	0.00	33	20	37.04	-	-	-
SCN4A	0	genome.wustl.edu	37	17	62049998	62049998	+	Silent	SNP	G	G	A			TCGA-A2-A1FW-01A-11D-A13L-09	TCGA-A2-A1FW-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ccdb42e-1ad1-4175-b83a-a24b019dc640	c2563fdc-a603-4974-a849-a938ca683f7c	17	62049998	62049998	G	A	SNP	SCN4A	ENST00000435607	human	ensembl	69_37n	-1	known	silent	c.204	p.Y68	0.430	NULL	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_PKD1_2_channel,prints_Na_channel_a4su,prints_Na_channel_asu,prints_PKD_2,pfscan_IQ_motif_EF-hand-BS	-	no_errors	SCN4A	HGNC	ENSG00000007314	42	0	0.00	204	50	19.69	-	-	-
SEMA3D	0	genome.wustl.edu	37	7	84670042	84670042	+	Silent	SNP	G	G	A			TCGA-A2-A1FW-01A-11D-A13L-09	TCGA-A2-A1FW-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ccdb42e-1ad1-4175-b83a-a24b019dc640	c2563fdc-a603-4974-a849-a938ca683f7c	7	84670042	84670042	G	A	SNP	SEMA3D	ENST00000284136	human	ensembl	69_37n	-1	known	silent	c.993	p.L331	0.959	pfam_Semaphorin/CD100_Ag,superfamily_Semaphorin/CD100_Ag,smart_Semaphorin/CD100_Ag,pfscan_Semaphorin/CD100_Ag	pfam_Semaphorin/CD100_Ag,pfam_Ig_V-set,superfamily_Semaphorin/CD100_Ag,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_Ig_sub,pfscan_Semaphorin/CD100_Ag,pfscan_Ig-like	-	no_errors	SEMA3D	HGNC	ENSG00000153993	66	0	0.00	67	12	15.00	-	-	-
SIGLEC1	0	genome.wustl.edu	37	20	3687268	3687268	+	Silent	SNP	G	G	A			TCGA-A2-A1FW-01A-11D-A13L-09	TCGA-A2-A1FW-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ccdb42e-1ad1-4175-b83a-a24b019dc640	c2563fdc-a603-4974-a849-a938ca683f7c	20	3687268	3687268	G	A	SNP	SIGLEC1	ENST00000344754	human	ensembl	69_37n	-1	known	silent	c.135	p.F45	0.987	pfam_Ig_V-set,smart_Ig_sub	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	SIGLEC1	HGNC	ENSG00000088827	11	0	0.00	41	10	19.23	-	-	-
SLC2A7	0	genome.wustl.edu	37	1	9079361	9079361	+	Missense_Mutation	SNP	C	C	T			TCGA-A2-A1FW-01A-11D-A13L-09	TCGA-A2-A1FW-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ccdb42e-1ad1-4175-b83a-a24b019dc640	c2563fdc-a603-4974-a849-a938ca683f7c	1	9079361	9079361	C	T	SNP	SLC2A7	ENST00000400906	human	ensembl	69_37n	-1	known	missense	c.343	p.A115T	0.937	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Sugar/inositol_transpt	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,prints_Sugar/inositol_transpt,pfscan_MFS_dom,tigrfam_Sugar/inositol_transpt	-	no_errors	SLC2A7	HGNC	ENSG00000197241	29	0	0.00	33	19	36.54	-	-	-
SLC39A2	0	genome.wustl.edu	37	14	21467657	21467660	+	Frame_Shift_Del	DEL	CTCA	CTCA	-			TCGA-A2-A1FW-01A-11D-A13L-09	TCGA-A2-A1FW-10A-01D-A13O-09	CTCA	CTCA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ccdb42e-1ad1-4175-b83a-a24b019dc640	c2563fdc-a603-4974-a849-a938ca683f7c	14	21467657	21467660	CTCA	-	DEL	SLC39A2	ENST00000298681	human	ensembl	69_37n	+1	known	frame_shift_del	c.52_55	p.T19fs	0.113:0.990:0.996:1.000	pfam_ZIP	pfam_ZIP	-	no_errors	SLC39A2	HGNC	ENSG00000165794	76	0	0.00	183	46	19.91	-	-	-
SLC45A2	0	genome.wustl.edu	37	5	33963829	33963829	+	Missense_Mutation	SNP	C	C	T			TCGA-A2-A1FW-01A-11D-A13L-09	TCGA-A2-A1FW-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ccdb42e-1ad1-4175-b83a-a24b019dc640	c2563fdc-a603-4974-a849-a938ca683f7c	5	33963829	33963829	C	T	SNP	SLC45A2	ENST00000296589	human	ensembl	69_37n	-1	known	missense	c.855	p.M285I	0.000	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	-	no_errors	SLC45A2	HGNC	ENSG00000164175	75	0	0.00	198	53	21.12	-	-	-
SLC6A1	0	genome.wustl.edu	37	3	11064046	11064046	+	Silent	SNP	C	C	T			TCGA-A2-A1FW-01A-11D-A13L-09	TCGA-A2-A1FW-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ccdb42e-1ad1-4175-b83a-a24b019dc640	c2563fdc-a603-4974-a849-a938ca683f7c	3	11064046	11064046	C	T	SNP	SLC6A1	ENST00000287766	human	ensembl	69_37n	+1	known	silent	c.606	p.D202	0.980	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport_GABA_GAT1	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport,prints_Na/ntran_symport_GABA_GAT1	-	no_errors	SLC6A1	HGNC	ENSG00000157103	50	0	0.00	105	21	16.67	-	-	-
SRGAP2	0	genome.wustl.edu	37	1	206611342	206611342	+	Nonsense_Mutation	SNP	C	C	T			TCGA-A2-A1FW-01A-11D-A13L-09	TCGA-A2-A1FW-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ccdb42e-1ad1-4175-b83a-a24b019dc640	c2563fdc-a603-4974-a849-a938ca683f7c	1	206611342	206611342	C	T	SNP	SRGAP2	ENST00000295713	human	ensembl	69_37n	+1	known	nonsense	c.1402	p.R468*	0.995	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_RhoGAP_dom,pfam_SH3_domain,pfam_SH3_2,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,smart_RhoGAP_dom,smart_SH3_domain,pfscan_SH3_domain,pfscan_RhoGAP_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	SRGAP2	HGNC	ENSG00000163486	57	0	0.00	19	64	77.11	-	-	-
SYNE2	0	genome.wustl.edu	37	14	64608223	64608223	+	Missense_Mutation	SNP	T	T	G			TCGA-A2-A1FW-01A-11D-A13L-09	TCGA-A2-A1FW-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ccdb42e-1ad1-4175-b83a-a24b019dc640	c2563fdc-a603-4974-a849-a938ca683f7c	14	64608223	64608223	T	G	SNP	SYNE2	ENST00000358025	human	ensembl	69_37n	+1	known	missense	c.15141	p.I5047M	0.993	smart_Spectrin/alpha-actinin	pfam_CH-domain,pfam_KASH,pfam_Spectrin_repeat,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE2	HGNC	ENSG00000054654	34	0	0.00	85	31	26.72	-	-	-
TBC1D21	0	genome.wustl.edu	37	15	74177166	74177166	+	Missense_Mutation	SNP	G	G	T			TCGA-A2-A1FW-01A-11D-A13L-09	TCGA-A2-A1FW-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ccdb42e-1ad1-4175-b83a-a24b019dc640	c2563fdc-a603-4974-a849-a938ca683f7c	15	74177166	74177166	G	T	SNP	TBC1D21	ENST00000300504	human	ensembl	69_37n	+1	known	missense	c.412	p.V138F	0.458	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D21	HGNC	ENSG00000167139	21	0	0.00	54	22	28.57	-	-	-
TBC1D8B	0	genome.wustl.edu	37	X	106096864	106096864	+	Missense_Mutation	SNP	T	T	C			TCGA-A2-A1FW-01A-11D-A13L-09	TCGA-A2-A1FW-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ccdb42e-1ad1-4175-b83a-a24b019dc640	c2563fdc-a603-4974-a849-a938ca683f7c	X	106096864	106096864	T	C	SNP	TBC1D8B	ENST00000357242	human	ensembl	69_37n	+1	known	missense	c.2237	p.I746T	1.000	superfamily_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,pfam_GRAM,superfamily_Rab-GTPase-TBC_dom,smart_GRAM,smart_Rab-GTPase-TBC_dom,pfscan_EF_HAND_2,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D8B	HGNC	ENSG00000133138	61	0	0.00	108	23	17.56	-	-	-
TDRD6	0	genome.wustl.edu	37	6	46660616	46660616	+	Missense_Mutation	SNP	A	A	T			TCGA-A2-A1FW-01A-11D-A13L-09	TCGA-A2-A1FW-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ccdb42e-1ad1-4175-b83a-a24b019dc640	c2563fdc-a603-4974-a849-a938ca683f7c	6	46660616	46660616	A	T	SNP	TDRD6	ENST00000316081	human	ensembl	69_37n	+1	known	missense	c.4751	p.Y1584F	0.997	pfam_Tudor,smart_Tudor,pfscan_Tudor	pfam_Tudor,smart_Tudor,pfscan_Tudor	-	no_errors	TDRD6	HGNC	ENSG00000180113	97	0	0.00	163	37	18.50	-	-	-
TESC	0	genome.wustl.edu	37	12	117494644	117494644	+	Missense_Mutation	SNP	C	C	T			TCGA-A2-A1FW-01A-11D-A13L-09	TCGA-A2-A1FW-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ccdb42e-1ad1-4175-b83a-a24b019dc640	c2563fdc-a603-4974-a849-a938ca683f7c	12	117494644	117494644	C	T	SNP	TESC	ENST00000392545	human	ensembl	69_37n	-1	known	missense	c.335	p.R112Q	0.999	NULL	smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	TESC	HGNC	ENSG00000088992	69	0	0.00	173	29	14.36	-	-	-
TLR4	0	genome.wustl.edu	37	9	120474689	120474689	+	Missense_Mutation	SNP	G	G	T			TCGA-A2-A1FW-01A-11D-A13L-09	TCGA-A2-A1FW-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ccdb42e-1ad1-4175-b83a-a24b019dc640	c2563fdc-a603-4974-a849-a938ca683f7c	9	120474689	120474689	G	T	SNP	TLR4	ENST00000355622	human	ensembl	69_37n	+1	known	missense	c.283	p.D95Y	1.000	pirsf_Toll-like_receptor,pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	pirsf_Toll-like_receptor,pfam_TIR_dom,pfam_Leu-rich_rpt,superfamily_TIR_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_TIR_dom,pfscan_TIR_dom	-	no_errors	TLR4	HGNC	ENSG00000136869	29	0	0.00	32	7	17.95	-	-	-
TNKS1BP1	0	genome.wustl.edu	37	11	57080520	57080520	+	Missense_Mutation	SNP	G	G	C			TCGA-A2-A1FW-01A-11D-A13L-09	TCGA-A2-A1FW-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ccdb42e-1ad1-4175-b83a-a24b019dc640	c2563fdc-a603-4974-a849-a938ca683f7c	11	57080520	57080520	G	C	SNP	TNKS1BP1	ENST00000358252	human	ensembl	69_37n	-1	known	missense	c.1642	p.P548A	0.000	NULL	NULL	-	no_errors	TNKS1BP1	HGNC	ENSG00000149115	12	0	0.00	17	5	22.73	-	-	-
TTN	0	genome.wustl.edu	37	2	179632645	179632645	+	Missense_Mutation	SNP	C	C	G			TCGA-A2-A1FW-01A-11D-A13L-09	TCGA-A2-A1FW-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ccdb42e-1ad1-4175-b83a-a24b019dc640	c2563fdc-a603-4974-a849-a938ca683f7c	2	179632645	179632645	C	G	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.9312	p.K3104N	0.931	pfam_Ig_I-set,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	48	0	0.00	74	22	22.92	-	-	-
USH1C	0	genome.wustl.edu	37	11	17545007	17545007	+	Nonsense_Mutation	SNP	C	C	A			TCGA-A2-A1FW-01A-11D-A13L-09	TCGA-A2-A1FW-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ccdb42e-1ad1-4175-b83a-a24b019dc640	c2563fdc-a603-4974-a849-a938ca683f7c	11	17545007	17545007	C	A	SNP	USH1C	ENST00000005226	human	ensembl	69_37n	-1	known	nonsense	c.778	p.E260*	1.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	USH1C	HGNC	ENSG00000006611	48	0	0.00	192	34	15.04	-	-	-
WBP5	0	genome.wustl.edu	37	X	102612872	102612872	+	Missense_Mutation	SNP	T	T	G			TCGA-A2-A1FW-01A-11D-A13L-09	TCGA-A2-A1FW-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ccdb42e-1ad1-4175-b83a-a24b019dc640	c2563fdc-a603-4974-a849-a938ca683f7c	X	102612872	102612872	T	G	SNP	WBP5	ENST00000372656	human	ensembl	69_37n	+1	known	missense	c.260	p.L87R	0.996	pfam_TF_A-like/BEX-like	pfam_TF_A-like/BEX-like	-	no_errors	WBP5	HGNC	ENSG00000185222	51	0	0.00	103	27	20.77	-	-	-
ZNF251	0	genome.wustl.edu	37	8	145947416	145947416	+	Silent	SNP	G	G	A			TCGA-A2-A1FW-01A-11D-A13L-09	TCGA-A2-A1FW-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ccdb42e-1ad1-4175-b83a-a24b019dc640	c2563fdc-a603-4974-a849-a938ca683f7c	8	145947416	145947416	G	A	SNP	ZNF251	ENST00000292562	human	ensembl	69_37n	-1	known	silent	c.1629	p.H543	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF251	HGNC	ENSG00000198169	32	0	0.00	106	17	13.82	-	-	-
ZNF507	0	genome.wustl.edu	37	19	32845865	32845865	+	Splice_Site	SNP	T	T	C			TCGA-A2-A1FW-01A-11D-A13L-09	TCGA-A2-A1FW-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ccdb42e-1ad1-4175-b83a-a24b019dc640	c2563fdc-a603-4974-a849-a938ca683f7c	19	32845865	32845865	T	C	SNP	ZNF507	ENST00000311921	human	ensembl	69_37n	+1	known	splice_site	c.2127+2	e1+2	1.000	-	-	-	no_errors	ZNF507	HGNC	ENSG00000168813	31	0	0.00	42	22	34.38	-	-	-
ZNF648	0	genome.wustl.edu	37	1	182025787	182025787	+	Silent	SNP	G	G	A			TCGA-A2-A1FW-01A-11D-A13L-09	TCGA-A2-A1FW-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6ccdb42e-1ad1-4175-b83a-a24b019dc640	c2563fdc-a603-4974-a849-a938ca683f7c	1	182025787	182025787	G	A	SNP	ZNF648	ENST00000339948	human	ensembl	69_37n	-1	known	silent	c.1359	p.C453	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF648	HGNC	ENSG00000179930	19	0	0.00	37	10	21.28	-	-	-
