Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
ACSM5	0	genome.wustl.edu	37	16	20442387	20442387	+	Missense_Mutation	SNP	G	G	A			TCGA-AC-A3HN-01A-11D-A20S-09	TCGA-AC-A3HN-10A-01D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e68140c8-fe1c-4293-948f-851bf3317ce3	5dc52294-fbb0-4f6a-a15e-5588e8a4751d	16	20442387	20442387	G	A	SNP	ACSM5	ENST00000331849	human	ensembl	69_37n	+1	known	missense	c.1198	p.D400N	1.000	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSM5	HGNC	ENSG00000183549	42	0	0.00	59	11	15.71	-	-	-
ATRX	0	genome.wustl.edu	37	X	76890049	76890049	+	RNA	SNP	C	C	G			TCGA-AC-A3HN-01A-11D-A20S-09	TCGA-AC-A3HN-10A-01D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e68140c8-fe1c-4293-948f-851bf3317ce3	5dc52294-fbb0-4f6a-a15e-5588e8a4751d	X	76890049	76890049	C	G	SNP	ATRX	ENST00000460639	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ATRX	HGNC	ENSG00000085224	34	0	0.00	30	5	14.29	-	-	-
BTG4	0	genome.wustl.edu	37	11	111368756	111368756	+	Missense_Mutation	SNP	G	G	C			TCGA-AC-A3HN-01A-11D-A20S-09	TCGA-AC-A3HN-10A-01D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e68140c8-fe1c-4293-948f-851bf3317ce3	5dc52294-fbb0-4f6a-a15e-5588e8a4751d	11	111368756	111368756	G	C	SNP	BTG4	ENST00000356018	human	ensembl	69_37n	-1	known	missense	c.278	p.T93S	1.000	pfam_Anti_prolifrtn,smart_Anti_prolifrtn,prints_Anti_prolifrtn	pfam_Anti_prolifrtn,smart_Anti_prolifrtn,prints_Anti_prolifrtn	-	no_errors	BTG4	HGNC	ENSG00000137707	80	0	0.00	40	14	25.93	-	-	-
C12orf28	0	genome.wustl.edu	37	12	70352300	70352300	+	Missense_Mutation	SNP	C	C	T			TCGA-AC-A3HN-01A-11D-A20S-09	TCGA-AC-A3HN-10A-01D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e68140c8-fe1c-4293-948f-851bf3317ce3	5dc52294-fbb0-4f6a-a15e-5588e8a4751d	12	70352300	70352300	C	T	SNP	C12orf28	ENST00000299350	human	ensembl	69_37n	+1	known	missense	c.817	p.R273C	0.827	NULL	NULL	-	no_errors	C12orf28	HGNC	ENSG00000166268	78	0	0.00	58	17	22.67	-	-	-
C9orf72	0	genome.wustl.edu	37	9	27548294	27548294	+	Silent	SNP	A	A	G			TCGA-AC-A3HN-01A-11D-A20S-09	TCGA-AC-A3HN-10A-01D-A20S-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e68140c8-fe1c-4293-948f-851bf3317ce3	5dc52294-fbb0-4f6a-a15e-5588e8a4751d	9	27548294	27548294	A	G	SNP	C9orf72	ENST00000380003	human	ensembl	69_37n	-1	known	silent	c.1386	p.F462	1.000	NULL	NULL	-	no_errors	C9orf72	HGNC	ENSG00000147894	21	0	0.00	15	5	25.00	-	-	-
CPN1	0	genome.wustl.edu	37	10	101835810	101835810	+	Missense_Mutation	SNP	C	C	T			TCGA-AC-A3HN-01A-11D-A20S-09	TCGA-AC-A3HN-10A-01D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e68140c8-fe1c-4293-948f-851bf3317ce3	5dc52294-fbb0-4f6a-a15e-5588e8a4751d	10	101835810	101835810	C	T	SNP	CPN1	ENST00000370418	human	ensembl	69_37n	-1	known	missense	c.278	p.R93H	1.000	pfam_Peptidase_M14,smart_Peptidase_M14	pfam_Peptidase_M14,pfam_DUF2817,superfamily_CarboxyPept-like_regulatory,smart_Peptidase_M14,prints_Peptidase_M14	-	no_errors	CPN1	HGNC	ENSG00000120054	26	0	0.00	25	11	30.56	-	-	-
CYTH4	0	genome.wustl.edu	37	22	37698059	37698059	+	RNA	SNP	A	A	G			TCGA-AC-A3HN-01A-11D-A20S-09	TCGA-AC-A3HN-10A-01D-A20S-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e68140c8-fe1c-4293-948f-851bf3317ce3	5dc52294-fbb0-4f6a-a15e-5588e8a4751d	22	37698059	37698059	A	G	SNP	CYTH4	ENST00000439667	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	CYTH4	HGNC	ENSG00000100055	38	0	0.00	33	12	26.67	-	-	-
ERCC6L	0	genome.wustl.edu	37	X	71428269	71428269	+	Missense_Mutation	SNP	T	T	G			TCGA-AC-A3HN-01A-11D-A20S-09	TCGA-AC-A3HN-10A-01D-A20S-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e68140c8-fe1c-4293-948f-851bf3317ce3	5dc52294-fbb0-4f6a-a15e-5588e8a4751d	X	71428269	71428269	T	G	SNP	ERCC6L	ENST00000334463	human	ensembl	69_37n	-1	known	missense	c.348	p.K116N	1.000	pfam_SNF2_N,pfam_Helicase/UvrB_dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_SNF2_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_TPR-contain_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ERCC6L	HGNC	ENSG00000186871	37	0	0.00	34	4	10.53	-	-	-
FAM134C	0	genome.wustl.edu	37	17	40761332	40761332	+	Missense_Mutation	SNP	G	G	A			TCGA-AC-A3HN-01A-11D-A20S-09	TCGA-AC-A3HN-10A-01D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e68140c8-fe1c-4293-948f-851bf3317ce3	5dc52294-fbb0-4f6a-a15e-5588e8a4751d	17	40761332	40761332	G	A	SNP	FAM134C	ENST00000309428	human	ensembl	69_37n	-1	known	missense	c.11	p.A4V	0.515	NULL	NULL	-	no_errors	FAM134C	HGNC	ENSG00000141699	38	0	0.00	31	8	20.00	-	-	-
FAM86EP	0	genome.wustl.edu	37	4	3948533	3948533	+	RNA	SNP	T	T	G			TCGA-AC-A3HN-01A-11D-A20S-09	TCGA-AC-A3HN-10A-01D-A20S-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e68140c8-fe1c-4293-948f-851bf3317ce3	5dc52294-fbb0-4f6a-a15e-5588e8a4751d	4	3948533	3948533	T	G	SNP	FAM86EP	ENST00000511488	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.936	-	-	-	no_errors	FAM86EP	HGNC	ENSG00000251669	106	0	0.00	107	28	20.74	-	-	-
FZD10	0	genome.wustl.edu	37	12	130648819	130648819	+	Missense_Mutation	SNP	C	C	T			TCGA-AC-A3HN-01A-11D-A20S-09	TCGA-AC-A3HN-10A-01D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e68140c8-fe1c-4293-948f-851bf3317ce3	5dc52294-fbb0-4f6a-a15e-5588e8a4751d	12	130648819	130648819	C	T	SNP	FZD10	ENST00000539839	human	ensembl	69_37n	+1	known	missense	c.1234	p.R412W	0.999	NULL	NULL	-	no_errors	FZD10	HGNC	ENSG00000111432	37	0	0.00	22	6	21.43	-	-	-
GOLGA6L2	0	genome.wustl.edu	37	15	23685092	23685094	+	In_Frame_Del	DEL	CTC	CTC	-			TCGA-AC-A3HN-01A-11D-A20S-09	TCGA-AC-A3HN-10A-01D-A20S-09	CTC	CTC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e68140c8-fe1c-4293-948f-851bf3317ce3	5dc52294-fbb0-4f6a-a15e-5588e8a4751d	15	23685092	23685094	CTC	-	DEL	GOLGA6L2	ENST00000567107	human	ensembl	69_37n	-1	putative	in_frame_del	c.2530_2528	p.G843in_frame_del	0.001:0.002:0.002	NULL	NULL	-	no_errors	GOLGA6L2	HGNC	ENSG00000174450	85	0	0.00	150	18	10.65	-	-	-
HRNR	0	genome.wustl.edu	37	1	152188920	152188920	+	Missense_Mutation	SNP	C	C	T			TCGA-AC-A3HN-01A-11D-A20S-09	TCGA-AC-A3HN-10A-01D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e68140c8-fe1c-4293-948f-851bf3317ce3	5dc52294-fbb0-4f6a-a15e-5588e8a4751d	1	152188920	152188920	C	T	SNP	HRNR	ENST00000368801	human	ensembl	69_37n	-1	known	missense	c.5185	p.G1729S	0.000	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2	-	no_errors	HRNR	HGNC	ENSG00000197915	22	0	0.00	32	12	27.27	-	-	-
KIAA1210	0	genome.wustl.edu	37	X	118215342	118215342	+	Missense_Mutation	SNP	C	C	A			TCGA-AC-A3HN-01A-11D-A20S-09	TCGA-AC-A3HN-10A-01D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e68140c8-fe1c-4293-948f-851bf3317ce3	5dc52294-fbb0-4f6a-a15e-5588e8a4751d	X	118215342	118215342	C	A	SNP	KIAA1210	ENST00000402510	human	ensembl	69_37n	-1	known	missense	c.5080	p.A1694S	1.000	NULL	NULL	-	no_errors	KIAA1210	HGNC	ENSG00000250423	47	0	0.00	50	9	15.25	-	-	-
PCDH15	0	genome.wustl.edu	37	10	55973752	55973752	+	Missense_Mutation	SNP	T	T	C			TCGA-AC-A3HN-01A-11D-A20S-09	TCGA-AC-A3HN-10A-01D-A20S-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e68140c8-fe1c-4293-948f-851bf3317ce3	5dc52294-fbb0-4f6a-a15e-5588e8a4751d	10	55973752	55973752	T	C	SNP	PCDH15	ENST00000320301	human	ensembl	69_37n	-1	known	missense	c.1042	p.S348G	0.999	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH15	HGNC	ENSG00000150275	34	0	0.00	24	3	11.11	-	-	-
PCDHGA10	0	genome.wustl.edu	37	5	140793054	140793054	+	Silent	SNP	G	G	A			TCGA-AC-A3HN-01A-11D-A20S-09	TCGA-AC-A3HN-10A-01D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e68140c8-fe1c-4293-948f-851bf3317ce3	5dc52294-fbb0-4f6a-a15e-5588e8a4751d	5	140793054	140793054	G	A	SNP	PCDHGA10	ENST00000398610	human	ensembl	69_37n	+1	known	silent	c.312	p.A104	0.001	pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA10	HGNC	ENSG00000253846	29	0	0.00	26	13	33.33	-	-	-
POLE	0	genome.wustl.edu	37	12	133252323	133252323	+	Silent	SNP	G	G	A			TCGA-AC-A3HN-01A-11D-A20S-09	TCGA-AC-A3HN-10A-01D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e68140c8-fe1c-4293-948f-851bf3317ce3	5dc52294-fbb0-4f6a-a15e-5588e8a4751d	12	133252323	133252323	G	A	SNP	POLE	ENST00000455752	human	ensembl	69_37n	-1	known	silent	c.1137	p.D379	1.000	pfam_DNA-dir_DNA_pol_B_exonuc,pfam_3'-5'_exonuclease_PolB-like,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_B	pfam_DNA_pol_e_suA_C,pfam_DNA-dir_DNA_pol_B_exonuc,pfam_DNA-dir_DNA_pol_B_multi_dom,pfam_3'-5'_exonuclease_PolB-like,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_B	-	no_errors	POLE	HGNC	ENSG00000177084	26	0	0.00	15	6	28.57	-	-	-
PPOX	0	genome.wustl.edu	37	1	161137204	161137204	+	Missense_Mutation	SNP	G	G	A			TCGA-AC-A3HN-01A-11D-A20S-09	TCGA-AC-A3HN-10A-01D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e68140c8-fe1c-4293-948f-851bf3317ce3	5dc52294-fbb0-4f6a-a15e-5588e8a4751d	1	161137204	161137204	G	A	SNP	PPOX	ENST00000352210	human	ensembl	69_37n	+1	known	missense	c.266	p.G89E	0.999	pfam_Amino_oxidase,tigrfam_Protoporphyrinogen_oxidase	pfam_Amino_oxidase,tigrfam_Protoporphyrinogen_oxidase	-	no_errors	PPOX	HGNC	ENSG00000143224	39	0	0.00	60	7	10.29	-	-	-
SIN3A	0	genome.wustl.edu	37	15	75673022	75673022	+	Missense_Mutation	SNP	T	T	C			TCGA-AC-A3HN-01A-11D-A20S-09	TCGA-AC-A3HN-10A-01D-A20S-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e68140c8-fe1c-4293-948f-851bf3317ce3	5dc52294-fbb0-4f6a-a15e-5588e8a4751d	15	75673022	75673022	T	C	SNP	SIN3A	ENST00000360439	human	ensembl	69_37n	-1	known	missense	c.3331	p.T1111A	1.000	NULL	pfam_PAH,pfam_HDAC_interact,superfamily_PAH,smart_HDAC_interact	-	no_errors	SIN3A	HGNC	ENSG00000169375	39	0	0.00	25	6	19.35	-	-	-
TUBE1	0	genome.wustl.edu	37	6	112394011	112394011	+	Silent	SNP	G	G	A			TCGA-AC-A3HN-01A-11D-A20S-09	TCGA-AC-A3HN-10A-01D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e68140c8-fe1c-4293-948f-851bf3317ce3	5dc52294-fbb0-4f6a-a15e-5588e8a4751d	6	112394011	112394011	G	A	SNP	TUBE1	ENST00000368662	human	ensembl	69_37n	-1	known	silent	c.1044	p.L348	0.980	pfam_Tubulin/FtsZ_2-layer-sand-dom,superfamily_Tub_FtsZ_C,smart_Tubulin/FtsZ_2-layer-sand-dom	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Epsilon_tubulin,prints_Tubulin	-	no_errors	TUBE1	HGNC	ENSG00000074935	38	0	0.00	35	14	28.57	-	-	-
ZNF846	0	genome.wustl.edu	37	19	9868562	9868562	+	Missense_Mutation	SNP	T	T	A			TCGA-AC-A3HN-01A-11D-A20S-09	TCGA-AC-A3HN-10A-01D-A20S-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e68140c8-fe1c-4293-948f-851bf3317ce3	5dc52294-fbb0-4f6a-a15e-5588e8a4751d	19	9868562	9868562	T	A	SNP	ZNF846	ENST00000397902	human	ensembl	69_37n	-1	known	missense	c.1191	p.K397N	0.001	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,smart_Znf_BED_prd,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF846	HGNC	ENSG00000196605	19	0	0.00	38	8	17.39	-	-	-
