Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
BMPR1B	0	genome.wustl.edu	37	4	96052584	96052584	+	Silent	SNP	C	C	T			TCGA-AO-A0JA-01A-11W-A071-09	TCGA-AO-A0JA-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0215d4f1-6697-4e8f-afc4-ff7c6439e56d	55ed9925-691d-43df-8472-2d6a52bc9068	4	96052584	96052584	C	T	SNP	BMPR1B	ENST00000440890	human	ensembl	69_37n	+1	known	silent	c.1087	p.L363	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_TGF_beta_rcpt_GS,pfam_Activin_rcpt,superfamily_Kinase-like_dom,smart_TGF_beta_rcpt_GS,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Activin_II/TGFBeta-II_recpt	-	no_errors	BMPR1B	HGNC	ENSG00000138696	297	0	0.00	206	77	27.21	-	-	-
COL7A1	0	genome.wustl.edu	37	3	48625779	48625779	+	Silent	SNP	C	C	A			TCGA-AO-A0JA-01A-11W-A071-09	TCGA-AO-A0JA-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0215d4f1-6697-4e8f-afc4-ff7c6439e56d	55ed9925-691d-43df-8472-2d6a52bc9068	3	48625779	48625779	C	A	SNP	COL7A1	ENST00000328333	human	ensembl	69_37n	-1	known	silent	c.2646	p.S882	0.057	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Collagen,pfam_Fibronectin_type3,pfam_VWF_A,pfam_Prot_inh_Kunz-m,superfamily_Fibronectin_type3,superfamily_Prot_inh_Kunz-m,smart_VWF_A,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_VWF_A,pfscan_Prot_inh_Kunz-m,prints_Prot_inh_Kunz-m	-	no_errors	COL7A1	HGNC	ENSG00000114270	13	0	0.00	1	4	80.00	-	-	-
COL9A1	0	genome.wustl.edu	37	6	70990716	70990717	+	Frame_Shift_Ins	INS	-	-	G			TCGA-AO-A0JA-01A-11W-A071-09	TCGA-AO-A0JA-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0215d4f1-6697-4e8f-afc4-ff7c6439e56d	55ed9925-691d-43df-8472-2d6a52bc9068	6	70990716	70990717	-	G	INS	COL9A1	ENST00000357250	human	ensembl	69_37n	-1	known	frame_shift_ins	c.903_902	p.P306fs	0.025:0.983	pfam_Collagen	pfam_Collagen,superfamily_ConA-like_lec_gl,smart_Laminin_G	-	no_errors	COL9A1	HGNC	ENSG00000112280	33	0	0.00	6	2	25.00	-	-	-
CPT1A	0	genome.wustl.edu	37	11	68574941	68574941	+	Silent	SNP	G	G	A			TCGA-AO-A0JA-01A-11W-A071-09	TCGA-AO-A0JA-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0215d4f1-6697-4e8f-afc4-ff7c6439e56d	55ed9925-691d-43df-8472-2d6a52bc9068	11	68574941	68574941	G	A	SNP	CPT1A	ENST00000265641	human	ensembl	69_37n	-1	known	silent	c.447	p.I149	0.983	NULL	pfam_Carn_acyl_trans	-	no_errors	CPT1A	HGNC	ENSG00000110090	16	0	0.00	8	6	42.86	-	-	-
CSMD1	0	genome.wustl.edu	37	8	2910130	2910130	+	Nonsense_Mutation	SNP	G	G	T			TCGA-AO-A0JA-01A-11W-A071-09	TCGA-AO-A0JA-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0215d4f1-6697-4e8f-afc4-ff7c6439e56d	55ed9925-691d-43df-8472-2d6a52bc9068	8	2910130	2910130	G	T	SNP	CSMD1	ENST00000520002	human	ensembl	69_37n	-1	known	nonsense	c.7517	p.S2506*	0.987	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_CUB,pfam_Sushi_SCR_CCP,superfamily_CUB,superfamily_Complement_control_module,smart_CUB,smart_Sushi_SCR_CCP,pfscan_CUB,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD1	HGNC	ENSG00000183117	39	0	0.00	31	15	32.61	-	-	-
CSMD1	0	genome.wustl.edu	37	8	3245175	3245175	+	Missense_Mutation	SNP	C	C	G			TCGA-AO-A0JA-01A-11W-A071-09	TCGA-AO-A0JA-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0215d4f1-6697-4e8f-afc4-ff7c6439e56d	55ed9925-691d-43df-8472-2d6a52bc9068	8	3245175	3245175	C	G	SNP	CSMD1	ENST00000520002	human	ensembl	69_37n	-1	known	missense	c.2626	p.D876H	1.000	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_CUB,pfam_Sushi_SCR_CCP,superfamily_CUB,superfamily_Complement_control_module,smart_CUB,smart_Sushi_SCR_CCP,pfscan_CUB,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD1	HGNC	ENSG00000183117	15	0	0.00	15	9	37.50	-	-	-
DNAH11	0	genome.wustl.edu	37	7	21784508	21784508	+	Silent	SNP	G	G	T			TCGA-AO-A0JA-01A-11W-A071-09	TCGA-AO-A0JA-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0215d4f1-6697-4e8f-afc4-ff7c6439e56d	55ed9925-691d-43df-8472-2d6a52bc9068	7	21784508	21784508	G	T	SNP	DNAH11	ENST00000328843	human	ensembl	69_37n	+1	known	silent	c.8358	p.L2786	0.836	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH11	HGNC	ENSG00000105877	27	0	0.00	12	8	40.00	-	-	-
EID3	0	genome.wustl.edu	37	12	104698208	104698208	+	Missense_Mutation	SNP	G	G	A			TCGA-AO-A0JA-01A-11W-A071-09	TCGA-AO-A0JA-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0215d4f1-6697-4e8f-afc4-ff7c6439e56d	55ed9925-691d-43df-8472-2d6a52bc9068	12	104698208	104698208	G	A	SNP	EID3	ENST00000527879	human	ensembl	69_37n	+1	known	missense	c.496	p.E166K	0.002	pfam_Nse4	pfam_Nse4	-	no_errors	EID3	HGNC	ENSG00000255150	222	0	0.00	112	36	24.32	-	-	-
EIF4G3	0	genome.wustl.edu	37	1	21306904	21306905	+	Frame_Shift_Ins	INS	-	-	G			TCGA-AO-A0JA-01A-11W-A071-09	TCGA-AO-A0JA-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0215d4f1-6697-4e8f-afc4-ff7c6439e56d	55ed9925-691d-43df-8472-2d6a52bc9068	1	21306904	21306905	-	G	INS	EIF4G3	ENST00000374937	human	ensembl	69_37n	-1	known	frame_shift_ins	c.269_268	p.Q90fs	1.000:1.000	NULL	pfam_MIF4G-like_typ-3,pfam_Initiation_fac_eIF4g_MI,pfam_W2_domain,superfamily_ARM-type_fold,smart_MIF4G-like_typ-3,smart_Initiation_fac_eIF4g_MI,smart_W2_domain	-	no_errors	EIF4G3	HGNC	ENSG00000075151	28	0	0.00	19	3	13.64	-	-	-
EXPH5	0	genome.wustl.edu	37	11	108383532	108383532	+	Missense_Mutation	SNP	G	G	A			TCGA-AO-A0JA-01A-11W-A071-09	TCGA-AO-A0JA-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0215d4f1-6697-4e8f-afc4-ff7c6439e56d	55ed9925-691d-43df-8472-2d6a52bc9068	11	108383532	108383532	G	A	SNP	EXPH5	ENST00000265843	human	ensembl	69_37n	-1	known	missense	c.2702	p.P901L	0.001	NULL	superfamily_Znf_FYVE_PHD,pfscan_Rab-bd_domain	-	no_errors	EXPH5	HGNC	ENSG00000110723	275	1	0.36	121	82	40.20	-	-	-
F5	0	genome.wustl.edu	37	1	169511852	169511852	+	Missense_Mutation	SNP	C	C	T			TCGA-AO-A0JA-01A-11W-A071-09	TCGA-AO-A0JA-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0215d4f1-6697-4e8f-afc4-ff7c6439e56d	55ed9925-691d-43df-8472-2d6a52bc9068	1	169511852	169511852	C	T	SNP	F5	ENST00000367796	human	ensembl	69_37n	-1	known	missense	c.2491	p.E831K	0.003	NULL	pfam_Coagulation_fac_5/8-C_type_dom,pfam_Cu-oxidase_3,superfamily_Galactose-bd-like,superfamily_Cupredoxin,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	-	no_errors	F5	HGNC	ENSG00000198734	383	0	0.00	428	118	21.53	-	-	-
FOXE3	0	genome.wustl.edu	37	1	47882383	47882384	+	Frame_Shift_Ins	INS	-	-	C			TCGA-AO-A0JA-01A-11W-A071-09	TCGA-AO-A0JA-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0215d4f1-6697-4e8f-afc4-ff7c6439e56d	55ed9925-691d-43df-8472-2d6a52bc9068	1	47882383	47882384	-	C	INS	FOXE3	ENST00000335071	human	ensembl	69_37n	+1	known	frame_shift_ins	c.396_397	p.R133fs	0.991:1.000	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXE3	HGNC	ENSG00000186790	25	0	0.00	10	2	16.67	-	-	-
GDF5	0	genome.wustl.edu	37	20	34025503	34025504	+	Frame_Shift_Ins	INS	-	-	C			TCGA-AO-A0JA-01A-11W-A071-09	TCGA-AO-A0JA-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0215d4f1-6697-4e8f-afc4-ff7c6439e56d	55ed9925-691d-43df-8472-2d6a52bc9068	20	34025503	34025504	-	C	INS	GDF5	ENST00000374369	human	ensembl	69_37n	-1	known	frame_shift_ins	c.206_205	p.A69fs	0.007:0.002	NULL	pfam_TGF-b_C,pfam_TGF-b_N,smart_TGF-b_C	-	no_errors	GDF5	HGNC	ENSG00000125965	23	0	0.00	15	2	11.76	-	-	-
GPS2	0	genome.wustl.edu	37	17	7217872	7217875	+	Frame_Shift_Del	DEL	CTTC	CTTC	-			TCGA-AO-A0JA-01A-11W-A071-09	TCGA-AO-A0JA-10A-01W-A071-09	CTTC	CTTC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0215d4f1-6697-4e8f-afc4-ff7c6439e56d	55ed9925-691d-43df-8472-2d6a52bc9068	17	7217872	7217875	CTTC	-	DEL	GPS2	ENST00000380728	human	ensembl	69_37n	-1	known	frame_shift_del	c.139_136	p.E46fs	1.000:0.999:1.000:1.000	NULL	NULL	-	no_errors	GPS2	HGNC	ENSG00000132522	150	0	0.00	29	17	36.96	-	-	-
IL18RAP	0	genome.wustl.edu	37	2	103040327	103040327	+	Missense_Mutation	SNP	G	G	C			TCGA-AO-A0JA-01A-11W-A071-09	TCGA-AO-A0JA-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0215d4f1-6697-4e8f-afc4-ff7c6439e56d	55ed9925-691d-43df-8472-2d6a52bc9068	2	103040327	103040327	G	C	SNP	IL18RAP	ENST00000264260	human	ensembl	69_37n	+1	known	missense	c.127	p.V43L	0.020	NULL	pfam_TIR_dom,superfamily_TIR_dom,smart_Ig_sub,smart_TIR_dom,pfscan_TIR_dom,pfscan_Ig-like,prints_IL1_rcpt_1	-	no_errors	IL18RAP	HGNC	ENSG00000115607	85	0	0.00	48	20	29.41	-	-	-
ITPR2	0	genome.wustl.edu	37	12	26749818	26749818	+	Missense_Mutation	SNP	C	C	T			TCGA-AO-A0JA-01A-11W-A071-09	TCGA-AO-A0JA-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0215d4f1-6697-4e8f-afc4-ff7c6439e56d	55ed9925-691d-43df-8472-2d6a52bc9068	12	26749818	26749818	C	T	SNP	ITPR2	ENST00000381340	human	ensembl	69_37n	-1	known	missense	c.4252	p.E1418K	1.000	superfamily_ARM-type_fold	pfam_Ca-rel_channel,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ARM-type_fold,smart_MIR_motif,prints_InsP3_rcpt-bd,pfscan_MIR_motif	-	no_errors	ITPR2	HGNC	ENSG00000123104	239	0	0.00	178	55	23.50	-	-	-
IZUMO2	0	genome.wustl.edu	37	19	50661562	50661562	+	Silent	SNP	C	C	T			TCGA-AO-A0JA-01A-11W-A071-09	TCGA-AO-A0JA-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0215d4f1-6697-4e8f-afc4-ff7c6439e56d	55ed9925-691d-43df-8472-2d6a52bc9068	19	50661562	50661562	C	T	SNP	IZUMO2	ENST00000293405	human	ensembl	69_37n	-1	known	silent	c.459	p.R153	0.019	NULL	NULL	-	no_errors	IZUMO2	HGNC	ENSG00000161652	181	0	0.00	81	43	34.68	-	-	-
LRP4	0	genome.wustl.edu	37	11	46917494	46917495	+	Frame_Shift_Ins	INS	-	-	C			TCGA-AO-A0JA-01A-11W-A071-09	TCGA-AO-A0JA-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0215d4f1-6697-4e8f-afc4-ff7c6439e56d	55ed9925-691d-43df-8472-2d6a52bc9068	11	46917494	46917495	-	C	INS	LRP4	ENST00000378623	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1124_1123	p.A375fs	0.850:0.844	superfamily_Growth_fac_rcpt,smart_EGF-like	pfam_LDLR_classB_rpt,pfam_LDrepeatLR_classA_rpt,pfam_EGF-like_Ca-bd,superfamily_Growth_fac_rcpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like,smart_EGF-like_Ca-bd,smart_LDLR_classB_rpt,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP4	HGNC	ENSG00000134569	44	0	0.00	23	3	11.54	-	-	-
MAP3K15	0	genome.wustl.edu	37	X	19478185	19478185	+	Missense_Mutation	SNP	C	C	T			TCGA-AO-A0JA-01A-11W-A071-09	TCGA-AO-A0JA-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0215d4f1-6697-4e8f-afc4-ff7c6439e56d	55ed9925-691d-43df-8472-2d6a52bc9068	X	19478185	19478185	C	T	SNP	MAP3K15	ENST00000338883	human	ensembl	69_37n	-1	known	missense	c.806	p.R269Q	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_SAM/pointed,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K15	HGNC	ENSG00000180815	81	0	0.00	77	31	28.44	-	-	-
MICALCL	0	genome.wustl.edu	37	11	12316344	12316345	+	In_Frame_Ins	INS	-	-	CTC			TCGA-AO-A0JA-01A-11W-A071-09	TCGA-AO-A0JA-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0215d4f1-6697-4e8f-afc4-ff7c6439e56d	55ed9925-691d-43df-8472-2d6a52bc9068	11	12316344	12316345	-	CTC	INS	MICALCL	ENST00000256186	human	ensembl	69_37n	+1	known	in_frame_ins	c.1366_1367	p.460in_frame_insP	0.004:0.006	NULL	pfam_DUF3585,smart_Fertility_inhib_FinO/ProQ	-	no_errors	MICALCL	HGNC	ENSG00000133808	106	0	0.00	75	10	11.76	-	-	-
MORC4	0	genome.wustl.edu	37	X	106229353	106229353	+	Missense_Mutation	SNP	G	G	T			TCGA-AO-A0JA-01A-11W-A071-09	TCGA-AO-A0JA-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0215d4f1-6697-4e8f-afc4-ff7c6439e56d	55ed9925-691d-43df-8472-2d6a52bc9068	X	106229353	106229353	G	T	SNP	MORC4	ENST00000355610	human	ensembl	69_37n	-1	known	missense	c.386	p.S129Y	1.000	superfamily_ATPase-like_ATP-bd	pfam_Znf_CW,pfam_ATPase-like_ATP-bd,superfamily_ATPase-like_ATP-bd,superfamily_Prefoldin,pfscan_Znf_CW	-	no_errors	MORC4	HGNC	ENSG00000133131	398	0	0.00	210	101	32.48	-	-	-
MUC20	0	genome.wustl.edu	37	3	195345533	195345533	+	Silent	SNP	A	A	C			TCGA-AO-A0JA-01A-11W-A071-09	TCGA-AO-A0JA-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0215d4f1-6697-4e8f-afc4-ff7c6439e56d	55ed9925-691d-43df-8472-2d6a52bc9068	3	195345533	195345533	A	C	SNP	MUC20	ENST00000381954	human	ensembl	69_37n	+1	known	silent	c.6	p.T2	0.012	NULL	NULL	-	no_errors	MUC20	HGNC	ENSG00000176945	12	0	0.00	7	4	36.36	-	-	-
MUC5B	0	genome.wustl.edu	37	11	1266662	1266662	+	Missense_Mutation	SNP	C	C	G			TCGA-AO-A0JA-01A-11W-A071-09	TCGA-AO-A0JA-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0215d4f1-6697-4e8f-afc4-ff7c6439e56d	55ed9925-691d-43df-8472-2d6a52bc9068	11	1266662	1266662	C	G	SNP	MUC5B	ENST00000447027	human	ensembl	69_37n	+1	known	missense	c.8561	p.S2854W	0.000	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC5B	HGNC	ENSG00000117983	49	0	0.00	18	7	28.00	-	-	-
MYLK	0	genome.wustl.edu	37	3	123444902	123444902	+	Missense_Mutation	SNP	G	G	A			TCGA-AO-A0JA-01A-11W-A071-09	TCGA-AO-A0JA-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0215d4f1-6697-4e8f-afc4-ff7c6439e56d	55ed9925-691d-43df-8472-2d6a52bc9068	3	123444902	123444902	G	A	SNP	MYLK	ENST00000360304	human	ensembl	69_37n	-1	known	missense	c.1540	p.P514S	1.000	pfam_Ig_I-set,pfscan_Ig-like	pfam_Ig_I-set,pfam_Prot_kinase_cat_dom,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	MYLK	HGNC	ENSG00000065534	24	0	0.00	6	12	66.67	-	-	-
NBPF12	0	genome.wustl.edu	37	1	146395461	146395461	+	Missense_Mutation	SNP	G	G	C			TCGA-AO-A0JA-01A-11W-A071-09	TCGA-AO-A0JA-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0215d4f1-6697-4e8f-afc4-ff7c6439e56d	55ed9925-691d-43df-8472-2d6a52bc9068	1	146395461	146395461	G	C	SNP	NBPF12	ENST00000446760	human	ensembl	69_37n	+1	known	missense	c.120	p.E40D	0.023	NULL	pfam_NBPF_dom	-	no_errors	NBPF12	HGNC	ENSG00000186275	152	0	0.00	106	24	18.46	-	-	-
NUMA1	0	genome.wustl.edu	37	11	71717272	71717272	+	Missense_Mutation	SNP	G	G	A			TCGA-AO-A0JA-01A-11W-A071-09	TCGA-AO-A0JA-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0215d4f1-6697-4e8f-afc4-ff7c6439e56d	55ed9925-691d-43df-8472-2d6a52bc9068	11	71717272	71717272	G	A	SNP	NUMA1	ENST00000393695	human	ensembl	69_37n	-1	known	missense	c.5501	p.S1834L	1.000	NULL	superfamily_Prefoldin	-	no_errors	NUMA1	HGNC	ENSG00000137497	32	0	0.00	19	4	17.39	-	-	-
OR7G1	0	genome.wustl.edu	37	19	9225564	9225564	+	Silent	SNP	C	C	T			TCGA-AO-A0JA-01A-11W-A071-09	TCGA-AO-A0JA-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0215d4f1-6697-4e8f-afc4-ff7c6439e56d	55ed9925-691d-43df-8472-2d6a52bc9068	19	9225564	9225564	C	T	SNP	OR7G1	ENST00000293614	human	ensembl	69_37n	-1	known	silent	c.876	p.L292	1.000	prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR7G1	HGNC	ENSG00000161807	256	0	0.00	169	74	30.45	-	-	-
PIK3CA	0	genome.wustl.edu	37	3	178936082	178936082	+	Missense_Mutation	SNP	G	G	A			TCGA-AO-A0JA-01A-11W-A071-09	TCGA-AO-A0JA-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0215d4f1-6697-4e8f-afc4-ff7c6439e56d	55ed9925-691d-43df-8472-2d6a52bc9068	3	178936082	178936082	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	+1	known	missense	c.1624	p.E542K	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	73	0	0.00	55	27	32.93	-	-	-
PTEN	0	genome.wustl.edu	37	10	89692780	89692780	+	Nonsense_Mutation	SNP	T	T	A			TCGA-AO-A0JA-01A-11W-A071-09	TCGA-AO-A0JA-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0215d4f1-6697-4e8f-afc4-ff7c6439e56d	55ed9925-691d-43df-8472-2d6a52bc9068	10	89692780	89692780	T	A	SNP	PTEN	ENST00000371953	human	ensembl	69_37n	+1	known	nonsense	c.264	p.Y88*	1.000	pfam_Dual-sp_phosphatase_cat-dom,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Bifunc_PIno_P3_Pase/Pase_PTEN,pfscan_Phosphatase_tensin-typ	pfam_Tensin_phosphatase_C2-dom,pfam_Dual-sp_phosphatase_cat-dom,pfam_Tyr_Pase_rcpt/non-rcpt,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Tyr_Pase_cat,pirsf_Bifunc_PIno_P3_Pase/Pase_PTEN,pfscan_Tyr/Dual-specificity_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	PTEN	HGNC	ENSG00000171862	240	0	0.00	77	86	52.76	-	-	-
RAB39A	0	genome.wustl.edu	37	11	107833060	107833060	+	Missense_Mutation	SNP	G	G	A			TCGA-AO-A0JA-01A-11W-A071-09	TCGA-AO-A0JA-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0215d4f1-6697-4e8f-afc4-ff7c6439e56d	55ed9925-691d-43df-8472-2d6a52bc9068	11	107833060	107833060	G	A	SNP	RAB39A	ENST00000320578	human	ensembl	69_37n	+1	known	missense	c.616	p.E206K	1.000	smart_Ran_GTPase	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB39A	HGNC	ENSG00000179331	67	0	0.00	24	28	53.85	-	-	-
RLF	0	genome.wustl.edu	37	1	40701837	40701838	+	Frame_Shift_Ins	INS	-	-	A			TCGA-AO-A0JA-01A-11W-A071-09	TCGA-AO-A0JA-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0215d4f1-6697-4e8f-afc4-ff7c6439e56d	55ed9925-691d-43df-8472-2d6a52bc9068	1	40701837	40701838	-	A	INS	RLF	ENST00000372771	human	ensembl	69_37n	+1	known	frame_shift_ins	c.1463_1464	p.D489fs	1.000:0.996	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	RLF	HGNC	ENSG00000117000	106	0	0.00	45	38	45.78	-	-	-
ZNF683	0	genome.wustl.edu	37	1	26688342	26688342	+	Missense_Mutation	SNP	G	G	T			TCGA-AO-A0JA-01A-11W-A071-09	TCGA-AO-A0JA-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0215d4f1-6697-4e8f-afc4-ff7c6439e56d	55ed9925-691d-43df-8472-2d6a52bc9068	1	26688342	26688342	G	T	SNP	ZNF683	ENST00000403843	human	ensembl	69_37n	-1	known	missense	c.1375	p.Q459K	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF683	HGNC	ENSG00000176083	63	0	0.00	10	13	56.52	-	-	-
