Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
ALPK2	0	genome.wustl.edu	37	18	56203486	56203486	+	Missense_Mutation	SNP	T	T	A			TCGA-AO-A12A-01A-21D-A10Y-09	TCGA-AO-A12A-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	77e7b41a-d4c8-42ee-ae6e-da15ea3634d9	b6e9d2a3-6c63-406b-b101-c4ee350b90df	18	56203486	56203486	T	A	SNP	ALPK2	ENST00000361673	human	ensembl	69_37n	-1	known	missense	c.3933	p.R1311S	0.002	NULL	pfam_MHCK_EF2_kinase,pfam_Ig_I-set,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_MHCK_EF2_kinase,pfscan_MHCK_EF2_kinase,pfscan_Ig-like	-	no_errors	ALPK2	HGNC	ENSG00000198796	75	0	0.00	75	15	16.67	-	-	-
CFHR3	0	genome.wustl.edu	37	1	196759282	196759282	+	Missense_Mutation	SNP	C	C	T			TCGA-AO-A12A-01A-21D-A10Y-09	TCGA-AO-A12A-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	77e7b41a-d4c8-42ee-ae6e-da15ea3634d9	b6e9d2a3-6c63-406b-b101-c4ee350b90df	1	196759282	196759282	C	T	SNP	CFHR3	ENST00000367425	human	ensembl	69_37n	+1	known	missense	c.721	p.P241S	0.000	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	CFHR3	HGNC	ENSG00000116785	178	1	0.56	81	24	22.86	-	-	-
CWF19L2	0	genome.wustl.edu	37	11	107300004	107300005	+	Frame_Shift_Ins	INS	-	-	T			TCGA-AO-A12A-01A-21D-A10Y-09	TCGA-AO-A12A-10A-01D-A110-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	77e7b41a-d4c8-42ee-ae6e-da15ea3634d9	b6e9d2a3-6c63-406b-b101-c4ee350b90df	11	107300004	107300005	-	T	INS	CWF19L2	ENST00000282251	human	ensembl	69_37n	-1	known	frame_shift_ins	c.954_953	p.Y318fs	0.000:0.057	NULL	pfam_Cwf19-like_C_dom-1,pfam_Cwf19-like_C_dom-2,superfamily_HIT-like	-	no_errors	CWF19L2	HGNC	ENSG00000152404	350	0	0.00	268	47	14.92	-	-	-
ERBB3	0	genome.wustl.edu	37	12	56479001	56479001	+	Nonsense_Mutation	SNP	C	C	T			TCGA-AO-A12A-01A-21D-A10Y-09	TCGA-AO-A12A-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	77e7b41a-d4c8-42ee-ae6e-da15ea3634d9	b6e9d2a3-6c63-406b-b101-c4ee350b90df	12	56479001	56479001	C	T	SNP	ERBB3	ENST00000411731	human	ensembl	69_37n	+1	known	nonsense	c.457	p.Q153*	0.299	NULL	pfam_EGF_rcpt_L	-	no_errors	ERBB3	HGNC	ENSG00000065361	51	0	0.00	48	6	11.11	-	-	-
FLRT2	0	genome.wustl.edu	37	14	86089046	86089046	+	Silent	SNP	G	G	A			TCGA-AO-A12A-01A-21D-A10Y-09	TCGA-AO-A12A-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	77e7b41a-d4c8-42ee-ae6e-da15ea3634d9	b6e9d2a3-6c63-406b-b101-c4ee350b90df	14	86089046	86089046	G	A	SNP	FLRT2	ENST00000330753	human	ensembl	69_37n	+1	known	silent	c.1188	p.T396	0.000	NULL	pfam_Leu-rich_rpt,pfam_Fibronectin_type3,pfam_LRR-contain_N,superfamily_Fibronectin_type3,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,pfscan_Fibronectin_type3	-	no_errors	FLRT2	HGNC	ENSG00000185070	89	0	0.00	92	11	10.68	-	-	-
GATA3	0	genome.wustl.edu	37	10	8111433	8111434	+	Splice_Site	DEL	CA	CA	-			TCGA-AO-A12A-01A-21D-A10Y-09	TCGA-AO-A12A-10A-01D-A110-09	CA	CA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	77e7b41a-d4c8-42ee-ae6e-da15ea3634d9	b6e9d2a3-6c63-406b-b101-c4ee350b90df	10	8111433	8111434	CA	-	DEL	GATA3	ENST00000379328	human	ensembl	69_37n	+1	known	splice_site_del	c.925-3_925-2	e4-2	1.000:1.000	-	-	-	no_errors	GATA3	HGNC	ENSG00000107485	84	0	0	59	24	28.92	-	-	-
GRIA1	0	genome.wustl.edu	37	5	153056565	153056565	+	Silent	SNP	G	G	A			TCGA-AO-A12A-01A-21D-A10Y-09	TCGA-AO-A12A-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	77e7b41a-d4c8-42ee-ae6e-da15ea3634d9	b6e9d2a3-6c63-406b-b101-c4ee350b90df	5	153056565	153056565	G	A	SNP	GRIA1	ENST00000448073	human	ensembl	69_37n	+1	known	silent	c.903	p.A301	0.889	pfam_ANF_lig-bd_rcpt	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIA1	HGNC	ENSG00000155511	55	0	0.00	56	9	13.85	-	-	-
KDM6A	0	genome.wustl.edu	37	X	44942776	44942776	+	Missense_Mutation	SNP	T	T	C			TCGA-AO-A12A-01A-21D-A10Y-09	TCGA-AO-A12A-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	77e7b41a-d4c8-42ee-ae6e-da15ea3634d9	b6e9d2a3-6c63-406b-b101-c4ee350b90df	X	44942776	44942776	T	C	SNP	KDM6A	ENST00000382899	human	ensembl	69_37n	+1	known	missense	c.3377	p.L1126P	1.000	smart_JmjC_dom,pfscan_JmjC_dom	pfam_JmjC_dom,pfam_TPR-1,smart_TPR_repeat,smart_JmjC_dom,pfscan_JmjC_dom,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	KDM6A	HGNC	ENSG00000147050	192	0	0.00	134	50	27.17	-	-	-
KRTAP10-4	0	genome.wustl.edu	37	21	45993851	45993851	+	Silent	SNP	C	C	T			TCGA-AO-A12A-01A-21D-A10Y-09	TCGA-AO-A12A-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	77e7b41a-d4c8-42ee-ae6e-da15ea3634d9	b6e9d2a3-6c63-406b-b101-c4ee350b90df	21	45993851	45993851	C	T	SNP	KRTAP10-4	ENST00000400374	human	ensembl	69_37n	+1	known	silent	c.216	p.C72	0.141	NULL	NULL	-	no_errors	KRTAP10-4	HGNC	ENSG00000215454	14	0	0.00	31	10	24.39	-	-	-
MUC12	0	genome.wustl.edu	37	7	100647276	100647276	+	Missense_Mutation	SNP	C	C	A			TCGA-AO-A12A-01A-21D-A10Y-09	TCGA-AO-A12A-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	77e7b41a-d4c8-42ee-ae6e-da15ea3634d9	b6e9d2a3-6c63-406b-b101-c4ee350b90df	7	100647276	100647276	C	A	SNP	MUC12	ENST00000379442	human	ensembl	69_37n	+1	known	missense	c.13861	p.P4621T	0.001	NULL	pfam_SEA	-	no_errors	MUC12	HGNC	ENSG00000205277	112	0	0.00	118	15	11.28	-	-	-
OR2T2	0	genome.wustl.edu	37	1	248616883	248616883	+	Missense_Mutation	SNP	T	T	A			TCGA-AO-A12A-01A-21D-A10Y-09	TCGA-AO-A12A-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	77e7b41a-d4c8-42ee-ae6e-da15ea3634d9	b6e9d2a3-6c63-406b-b101-c4ee350b90df	1	248616883	248616883	T	A	SNP	OR2T2	ENST00000342927	human	ensembl	69_37n	+1	known	missense	c.785	p.L262Q	0.339	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2T2	HGNC	ENSG00000196240	34	0	0.00	122	18	12.86	-	-	-
OTOGL	0	genome.wustl.edu	37	12	80750196	80750196	+	Missense_Mutation	SNP	G	G	T			TCGA-AO-A12A-01A-21D-A10Y-09	TCGA-AO-A12A-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	77e7b41a-d4c8-42ee-ae6e-da15ea3634d9	b6e9d2a3-6c63-406b-b101-c4ee350b90df	12	80750196	80750196	G	T	SNP	OTOGL	ENST00000458043	human	ensembl	69_37n	+1	known	missense	c.5780	p.G1927V	0.982	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_AbfB,superfamily_AbfB,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_Cys_knot_C,pfscan_Cys_knot_C	-	no_errors	OTOGL	HGNC	ENSG00000165899	129	0	0.00	54	13	19.40	-	-	-
PIK3CA	0	genome.wustl.edu	37	3	178936082	178936082	+	Missense_Mutation	SNP	G	G	A			TCGA-AO-A12A-01A-21D-A10Y-09	TCGA-AO-A12A-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	77e7b41a-d4c8-42ee-ae6e-da15ea3634d9	b6e9d2a3-6c63-406b-b101-c4ee350b90df	3	178936082	178936082	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	+1	known	missense	c.1624	p.E542K	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	162	0	0.00	69	41	36.94	-	-	-
POLH	0	genome.wustl.edu	37	6	43571740	43571740	+	Silent	SNP	G	G	A			TCGA-AO-A12A-01A-21D-A10Y-09	TCGA-AO-A12A-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	77e7b41a-d4c8-42ee-ae6e-da15ea3634d9	b6e9d2a3-6c63-406b-b101-c4ee350b90df	6	43571740	43571740	G	A	SNP	POLH	ENST00000372236	human	ensembl	69_37n	+1	known	silent	c.876	p.E292	0.884	pfam_DNA_pol_Y-fam_little_finger,pirsf_DNA_pol_eta	pfam_DNA_repair_prot_UmuC-like,pfam_DNA_pol_Y-fam_little_finger,superfamily_DNA_pol_Y-fam_little_finger,pirsf_DNA_pol_eta,pfscan_DNA_repair_prot_UmuC-like_N	-	no_errors	POLH	HGNC	ENSG00000170734	209	0	0.00	144	18	11.11	-	-	-
SRRM5	0	genome.wustl.edu	37	19	44117260	44117260	+	Missense_Mutation	SNP	C	C	A			TCGA-AO-A12A-01A-21D-A10Y-09	TCGA-AO-A12A-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	77e7b41a-d4c8-42ee-ae6e-da15ea3634d9	b6e9d2a3-6c63-406b-b101-c4ee350b90df	19	44117260	44117260	C	A	SNP	SRRM5	ENST00000526798	human	ensembl	69_37n	+1	known	missense	c.1032	p.H344Q	0.001	NULL	NULL	-	no_errors	SRRM5	HGNC	ENSG00000226763	58	0	0.00	63	7	10.00	-	-	-
ZNF93	0	genome.wustl.edu	37	19	20026206	20026206	+	Missense_Mutation	SNP	G	G	A			TCGA-AO-A12A-01A-21D-A10Y-09	TCGA-AO-A12A-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	77e7b41a-d4c8-42ee-ae6e-da15ea3634d9	b6e9d2a3-6c63-406b-b101-c4ee350b90df	19	20026206	20026206	G	A	SNP	ZNF93	ENST00000343769	human	ensembl	69_37n	+1	known	missense	c.121	p.V41I	0.898	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF93	HGNC	ENSG00000184635	403	0	0.00	211	27	11.34	-	-	-
