Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
ADCY6	0	genome.wustl.edu	37	12	49167398	49167398	+	Silent	SNP	C	C	T			TCGA-AO-A1KO-01A-31D-A188-09	TCGA-AO-A1KO-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2cdecb2b-40b1-4419-bcd9-101cee78966c	9c3bd11e-386d-4ad4-a8c4-73eae17d537e	12	49167398	49167398	C	T	SNP	ADCY6	ENST00000307885	human	ensembl	69_37n	-1	known	silent	c.2475	p.L825	1.000	NULL	pfam_A/G_cyclase,pfam_Adenylate_cyclase-like,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY6	HGNC	ENSG00000174233	46	0	0.00	24	4	14.29	-	-	-
AEN	0	genome.wustl.edu	37	15	89169536	89169536	+	Frame_Shift_Del	DEL	A	A	-			TCGA-AO-A1KO-01A-31D-A188-09	TCGA-AO-A1KO-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2cdecb2b-40b1-4419-bcd9-101cee78966c	9c3bd11e-386d-4ad4-a8c4-73eae17d537e	15	89169536	89169536	A	-	DEL	AEN	ENST00000379231	human	ensembl	69_37n	+1	known	frame_shift_del	c.96	p.R33fs	1.000	NULL	pfam_Exonuclease_RNaseT/DNA_pol3,superfamily_RNaseH-like_dom,smart_Exonuclease	-	no_errors	AEN	HGNC	ENSG00000181026	18	0	0.00	5	2	28.57	-	-	-
AKAP6	0	genome.wustl.edu	37	14	33014845	33014845	+	Frame_Shift_Del	DEL	C	C	-			TCGA-AO-A1KO-01A-31D-A188-09	TCGA-AO-A1KO-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2cdecb2b-40b1-4419-bcd9-101cee78966c	9c3bd11e-386d-4ad4-a8c4-73eae17d537e	14	33014845	33014845	C	-	DEL	AKAP6	ENST00000280979	human	ensembl	69_37n	+1	known	frame_shift_del	c.986	p.S329fs	0.001	NULL	smart_Spectrin/alpha-actinin	-	no_errors	AKAP6	HGNC	ENSG00000151320	41	0	0.00	12	2	14.29	-	-	-
ARHGAP5	0	genome.wustl.edu	37	14	32562919	32562919	+	Frame_Shift_Del	DEL	A	A	-			TCGA-AO-A1KO-01A-31D-A188-09	TCGA-AO-A1KO-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2cdecb2b-40b1-4419-bcd9-101cee78966c	9c3bd11e-386d-4ad4-a8c4-73eae17d537e	14	32562919	32562919	A	-	DEL	ARHGAP5	ENST00000345122	human	ensembl	69_37n	+1	known	frame_shift_del	c.3044	p.G1016fs	1.000	NULL	pfam_RhoGAP_dom,pfam_FF_domain,pfam_Small_GTPase,superfamily_Rho_GTPase_activation_prot,superfamily_FF_domain,smart_FF_domain,smart_RhoGAP_dom,pfscan_RhoGAP_dom,prints_Small_GTPase	-	no_errors	ARHGAP5	HGNC	ENSG00000100852	56	0	0.00	16	2	11.11	-	-	-
ASPHD2	0	genome.wustl.edu	37	22	26829760	26829761	+	Frame_Shift_Ins	INS	-	-	T			TCGA-AO-A1KO-01A-31D-A188-09	TCGA-AO-A1KO-10A-01D-A13O-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2cdecb2b-40b1-4419-bcd9-101cee78966c	9c3bd11e-386d-4ad4-a8c4-73eae17d537e	22	26829760	26829761	-	T	INS	ASPHD2	ENST00000215906	human	ensembl	69_37n	+1	known	frame_shift_ins	c.179_180	p.V61fs	0.889:0.000	NULL	pfam_Asp_Arg_b-Hydrxlase	-	no_errors	ASPHD2	HGNC	ENSG00000128203	43	0	0.00	9	2	18.18	-	-	-
C1orf63	0	genome.wustl.edu	37	1	25572981	25572981	+	Frame_Shift_Del	DEL	G	G	-			TCGA-AO-A1KO-01A-31D-A188-09	TCGA-AO-A1KO-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2cdecb2b-40b1-4419-bcd9-101cee78966c	9c3bd11e-386d-4ad4-a8c4-73eae17d537e	1	25572981	25572981	G	-	DEL	C1orf63	ENST00000417642	human	ensembl	69_37n	-1	known	frame_shift_del	c.453	p.R152fs	0.005	NULL	NULL	-	no_errors	C1orf63	HGNC	ENSG00000117616	42	0	0.00	10	2	16.67	-	-	-
CAMK1D	0	genome.wustl.edu	37	10	12391854	12391854	+	Frame_Shift_Del	DEL	A	A	-			TCGA-AO-A1KO-01A-31D-A188-09	TCGA-AO-A1KO-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2cdecb2b-40b1-4419-bcd9-101cee78966c	9c3bd11e-386d-4ad4-a8c4-73eae17d537e	10	12391854	12391854	A	-	DEL	CAMK1D	ENST00000378847	human	ensembl	69_37n	+1	known	frame_shift_del	c.37	p.K14fs	1.000	superfamily_Kinase-like_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CAMK1D	HGNC	ENSG00000183049	9	0	0.00	6	2	25.00	-	-	-
ENTPD5	0	genome.wustl.edu	37	14	74442670	74442670	+	Missense_Mutation	SNP	A	A	G			TCGA-AO-A1KO-01A-31D-A188-09	TCGA-AO-A1KO-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2cdecb2b-40b1-4419-bcd9-101cee78966c	9c3bd11e-386d-4ad4-a8c4-73eae17d537e	14	74442670	74442670	A	G	SNP	ENTPD5	ENST00000334696	human	ensembl	69_37n	-1	known	missense	c.691	p.F231L	1.000	pfam_GDA1_CD39_NTPase	pfam_GDA1_CD39_NTPase	-	no_errors	ENTPD5	HGNC	ENSG00000187097	56	0	0.00	33	4	10.81	-	-	-
EWSR1	0	genome.wustl.edu	37	22	29694768	29694768	+	Missense_Mutation	SNP	G	G	A			TCGA-AO-A1KO-01A-31D-A188-09	TCGA-AO-A1KO-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2cdecb2b-40b1-4419-bcd9-101cee78966c	9c3bd11e-386d-4ad4-a8c4-73eae17d537e	22	29694768	29694768	G	A	SNP	EWSR1	ENST00000414183	human	ensembl	69_37n	+1	known	missense	c.1478	p.G493E	1.000	NULL	pfam_Znf_RanBP2,pfam_RRM_dom,smart_RRM_dom,smart_Znf_RanBP2,pfscan_Znf_RanBP2,pfscan_RRM_dom	-	no_errors	EWSR1	HGNC	ENSG00000182944	95	0	0.00	34	4	10.53	-	-	-
FAM157B	0	genome.wustl.edu	37	9	141107536	141107537	+	RNA	INS	-	-	GCA			TCGA-AO-A1KO-01A-31D-A188-09	TCGA-AO-A1KO-10A-01D-A13O-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2cdecb2b-40b1-4419-bcd9-101cee78966c	9c3bd11e-386d-4ad4-a8c4-73eae17d537e	9	141107536	141107537	-	GCA	INS	FAM157B	ENST00000446912	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.033:0.036	-	-	-	no_errors	FAM157B	HGNC	ENSG00000233013	60	0	0.00	25	14	35.90	-	-	-
HCFC1	0	genome.wustl.edu	37	X	153236144	153236145	+	Frame_Shift_Ins	INS	-	-	A			TCGA-AO-A1KO-01A-31D-A188-09	TCGA-AO-A1KO-10A-01D-A13O-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2cdecb2b-40b1-4419-bcd9-101cee78966c	9c3bd11e-386d-4ad4-a8c4-73eae17d537e	X	153236144	153236145	-	A	INS	HCFC1	ENST00000310441	human	ensembl	69_37n	-1	known	frame_shift_ins	c.148_147	p.G49fs	1.000:0.968	pfam_Kelch_1	pfam_Kelch_2,pfam_Kelch_1,superfamily_Fibronectin_type3,smart_Fibronectin_type3	-	no_errors	HCFC1	HGNC	ENSG00000172534	63	0	0.00	12	2	14.29	-	-	-
KRTAP5-10	0	genome.wustl.edu	37	11	71276948	71276948	+	Silent	SNP	T	T	C			TCGA-AO-A1KO-01A-31D-A188-09	TCGA-AO-A1KO-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2cdecb2b-40b1-4419-bcd9-101cee78966c	9c3bd11e-386d-4ad4-a8c4-73eae17d537e	11	71276948	71276948	T	C	SNP	KRTAP5-10	ENST00000398531	human	ensembl	69_37n	+1	known	silent	c.315	p.G105	0.175	NULL	NULL	-	no_errors	KRTAP5-10	HGNC	ENSG00000204572	44	0	0.00	32	13	28.26	-	-	-
LRIT3	0	genome.wustl.edu	37	4	110772968	110772968	+	Missense_Mutation	SNP	C	C	T			TCGA-AO-A1KO-01A-31D-A188-09	TCGA-AO-A1KO-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2cdecb2b-40b1-4419-bcd9-101cee78966c	9c3bd11e-386d-4ad4-a8c4-73eae17d537e	4	110772968	110772968	C	T	SNP	LRIT3	ENST00000379920	human	ensembl	69_37n	+1	known	missense	c.290	p.T97I	1.000	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	pfam_Ig_I-set,pfam_Leu-rich_rpt,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	LRIT3	HGNC	ENSG00000183423	73	0	0.00	29	4	12.12	-	-	-
MFSD9	0	genome.wustl.edu	37	2	103340326	103340326	+	Frame_Shift_Del	DEL	G	G	-			TCGA-AO-A1KO-01A-31D-A188-09	TCGA-AO-A1KO-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2cdecb2b-40b1-4419-bcd9-101cee78966c	9c3bd11e-386d-4ad4-a8c4-73eae17d537e	2	103340326	103340326	G	-	DEL	MFSD9	ENST00000258436	human	ensembl	69_37n	-1	known	frame_shift_del	c.470	p.S157fs	1.000	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,prints_Tet-R_TetA/multi-R_MdtG,pfscan_MFS_dom	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,prints_Tet-R_TetA/multi-R_MdtG,pfscan_MFS_dom	-	no_errors	MFSD9	HGNC	ENSG00000135953	48	0	0.00	9	2	18.18	-	-	-
MYO1B	0	genome.wustl.edu	37	2	192279367	192279367	+	Frame_Shift_Del	DEL	A	A	-			TCGA-AO-A1KO-01A-31D-A188-09	TCGA-AO-A1KO-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2cdecb2b-40b1-4419-bcd9-101cee78966c	9c3bd11e-386d-4ad4-a8c4-73eae17d537e	2	192279367	192279367	A	-	DEL	MYO1B	ENST00000304164	human	ensembl	69_37n	+1	known	frame_shift_del	c.3131	p.D1044fs	1.000	pfam_Myosin_tail_2	pfam_Myosin_head_motor_dom,pfam_Myosin_tail_2,pfam_IQ_motif_EF-hand-BS,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO1B	HGNC	ENSG00000128641	60	0	0.00	13	2	13.33	-	-	-
NFRKB	0	genome.wustl.edu	37	11	129751713	129751713	+	Silent	SNP	T	T	A			TCGA-AO-A1KO-01A-31D-A188-09	TCGA-AO-A1KO-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2cdecb2b-40b1-4419-bcd9-101cee78966c	9c3bd11e-386d-4ad4-a8c4-73eae17d537e	11	129751713	129751713	T	A	SNP	NFRKB	ENST00000524794	human	ensembl	69_37n	-1	known	silent	c.1302	p.P434	0.422	NULL	NULL	-	no_errors	NFRKB	HGNC	ENSG00000170322	34	0	0.00	10	4	28.57	-	-	-
NUP210	0	genome.wustl.edu	37	3	13418986	13418986	+	Silent	SNP	G	G	A			TCGA-AO-A1KO-01A-31D-A188-09	TCGA-AO-A1KO-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2cdecb2b-40b1-4419-bcd9-101cee78966c	9c3bd11e-386d-4ad4-a8c4-73eae17d537e	3	13418986	13418986	G	A	SNP	NUP210	ENST00000254508	human	ensembl	69_37n	-1	known	silent	c.1122	p.D374	0.998	NULL	pfam_Big_2,superfamily_Invasin/intimin_cell_adhesion,superfamily_Cadherin-like,smart_Big_2	-	no_errors	NUP210	HGNC	ENSG00000132182	52	0	0.00	24	4	13.79	-	-	-
OSBPL5	0	genome.wustl.edu	37	11	3115043	3115043	+	Missense_Mutation	SNP	C	C	A			TCGA-AO-A1KO-01A-31D-A188-09	TCGA-AO-A1KO-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2cdecb2b-40b1-4419-bcd9-101cee78966c	9c3bd11e-386d-4ad4-a8c4-73eae17d537e	11	3115043	3115043	C	A	SNP	OSBPL5	ENST00000263650	human	ensembl	69_37n	-1	known	missense	c.1742	p.S581I	0.471	pfam_Oxysterol-bd	pfam_Oxysterol-bd,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	OSBPL5	HGNC	ENSG00000021762	49	0	0.00	26	4	13.33	-	-	-
OSR2	0	genome.wustl.edu	37	8	99963879	99963880	+	Frame_Shift_Del	DEL	TG	TG	-			TCGA-AO-A1KO-01A-31D-A188-09	TCGA-AO-A1KO-10A-01D-A13O-09	TG	TG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2cdecb2b-40b1-4419-bcd9-101cee78966c	9c3bd11e-386d-4ad4-a8c4-73eae17d537e	8	99963879	99963880	TG	-	DEL	OSR2	ENST00000457907	human	ensembl	69_37n	+1	known	frame_shift_del	c.1252_1253	p.C418fs	1.000:1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	OSR2	HGNC	ENSG00000164920	46	0	0.00	15	2	11.76	-	-	-
PYGL	0	genome.wustl.edu	37	14	51398401	51398401	+	Frame_Shift_Del	DEL	T	T	-			TCGA-AO-A1KO-01A-31D-A188-09	TCGA-AO-A1KO-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2cdecb2b-40b1-4419-bcd9-101cee78966c	9c3bd11e-386d-4ad4-a8c4-73eae17d537e	14	51398401	51398401	T	-	DEL	PYGL	ENST00000216392	human	ensembl	69_37n	-1	known	frame_shift_del	c.518	p.D173fs	1.000	pfam_Glyco_trans_35,pirsf_Glyco_trans_35,tigrfam_Glycg_phsphrylas	pfam_Glyco_trans_35,pirsf_Glyco_trans_35,tigrfam_Glycg_phsphrylas	-	no_errors	PYGL	HGNC	ENSG00000100504	45	0	0.00	13	2	13.33	-	-	-
RASA4CP	0	genome.wustl.edu	37	7	44070465	44070465	+	RNA	DEL	G	G	-			TCGA-AO-A1KO-01A-31D-A188-09	TCGA-AO-A1KO-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2cdecb2b-40b1-4419-bcd9-101cee78966c	9c3bd11e-386d-4ad4-a8c4-73eae17d537e	7	44070465	44070465	G	-	DEL	RASA4CP	ENST00000425524	human	ensembl	69_37n	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RASA4CP	HGNC	ENSG00000228903	26	0	0.00	5	2	28.57	-	-	-
RYR3	0	genome.wustl.edu	37	15	33962709	33962709	+	Frame_Shift_Del	DEL	C	C	-			TCGA-AO-A1KO-01A-31D-A188-09	TCGA-AO-A1KO-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2cdecb2b-40b1-4419-bcd9-101cee78966c	9c3bd11e-386d-4ad4-a8c4-73eae17d537e	15	33962709	33962709	C	-	DEL	RYR3	ENST00000389232	human	ensembl	69_37n	+1	known	frame_shift_del	c.5812	p.K1939fs	0.932	NULL	pfam_Ryanodine_rcpt,pfam_Ca-rel_channel,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,superfamily_4_helix_cytokine-like_core,superfamily_ARM-type_fold,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_HAND_2,pfscan_MIR_motif	-	no_errors	RYR3	HGNC	ENSG00000198838	72	0	0.00	18	2	10.00	-	-	-
SMOC2	0	genome.wustl.edu	37	6	168910728	168910728	+	Missense_Mutation	SNP	A	A	T			TCGA-AO-A1KO-01A-31D-A188-09	TCGA-AO-A1KO-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2cdecb2b-40b1-4419-bcd9-101cee78966c	9c3bd11e-386d-4ad4-a8c4-73eae17d537e	6	168910728	168910728	A	T	SNP	SMOC2	ENST00000354536	human	ensembl	69_37n	+1	known	missense	c.218	p.D73V	1.000	pfam_Kazal-type_dom,pfam_Prot_inh_Kazal,superfamily_Thyroglobulin_1,smart_Prot_inh_Kazal	pfam_Thyroglobulin_1,pfam_SPARC/Testican_Ca-bd-dom,pfam_Kazal-type_dom,pfam_Prot_inh_Kazal,superfamily_Thyroglobulin_1,smart_Prot_inh_Kazal,smart_Thyroglobulin_1,pfscan_EF_HAND_2,pfscan_Thyroglobulin_1	-	no_errors	SMOC2	HGNC	ENSG00000112562	85	0	0.00	34	4	10.53	-	-	-
SYNE1	0	genome.wustl.edu	37	6	152454589	152454589	+	Missense_Mutation	SNP	C	C	A			TCGA-AO-A1KO-01A-31D-A188-09	TCGA-AO-A1KO-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2cdecb2b-40b1-4419-bcd9-101cee78966c	9c3bd11e-386d-4ad4-a8c4-73eae17d537e	6	152454589	152454589	C	A	SNP	SYNE1	ENST00000265368	human	ensembl	69_37n	-1	known	missense	c.25823	p.R8608I	1.000	NULL	pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC_transptrTM_dom_typ1,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE1	HGNC	ENSG00000131018	56	0	0.00	19	4	17.39	-	-	-
TLR7	0	genome.wustl.edu	37	X	12905869	12905869	+	Nonsense_Mutation	SNP	C	C	T			TCGA-AO-A1KO-01A-31D-A188-09	TCGA-AO-A1KO-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2cdecb2b-40b1-4419-bcd9-101cee78966c	9c3bd11e-386d-4ad4-a8c4-73eae17d537e	X	12905869	12905869	C	T	SNP	TLR7	ENST00000380659	human	ensembl	69_37n	+1	known	nonsense	c.2242	p.Q748*	0.602	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_TIR_dom,superfamily_TIR_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_TIR_dom,pfscan_TIR_dom	-	no_errors	TLR7	HGNC	ENSG00000196664	70	0	0.00	32	4	11.11	-	-	-
TMEM247	0	genome.wustl.edu	37	2	46707888	46707888	+	Frame_Shift_Del	DEL	G	G	-			TCGA-AO-A1KO-01A-31D-A188-09	TCGA-AO-A1KO-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2cdecb2b-40b1-4419-bcd9-101cee78966c	9c3bd11e-386d-4ad4-a8c4-73eae17d537e	2	46707888	46707888	G	-	DEL	TMEM247	ENST00000434431	human	ensembl	69_37n	+1	known	frame_shift_del	c.462	p.A155fs	0.083	NULL	NULL	-	no_stop_codon:bad_bp_length_for_coding_region	TMEM247	HGNC	ENSG00000187600	11	0	0.00	3	2	40.00	-	-	-
TNS3	0	genome.wustl.edu	37	7	47408710	47408710	+	Silent	SNP	G	G	C			TCGA-AO-A1KO-01A-31D-A188-09	TCGA-AO-A1KO-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2cdecb2b-40b1-4419-bcd9-101cee78966c	9c3bd11e-386d-4ad4-a8c4-73eae17d537e	7	47408710	47408710	G	C	SNP	TNS3	ENST00000311160	human	ensembl	69_37n	-1	known	silent	c.1533	p.T511	1.000	NULL	pfam_PTB,pfam_Tensin_phosphatase_C2-dom,pfam_SH2,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Tyr_Pase_cat,smart_SH2,smart_PTyr_interaction_dom,pfscan_SH2,pfscan_Tyr/Dual-specificity_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	TNS3	HGNC	ENSG00000136205	44	0	0.00	17	4	19.05	-	-	-
USPL1	0	genome.wustl.edu	37	13	31231753	31231753	+	Silent	SNP	A	A	G			TCGA-AO-A1KO-01A-31D-A188-09	TCGA-AO-A1KO-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2cdecb2b-40b1-4419-bcd9-101cee78966c	9c3bd11e-386d-4ad4-a8c4-73eae17d537e	13	31231753	31231753	A	G	SNP	USPL1	ENST00000255304	human	ensembl	69_37n	+1	known	silent	c.1539	p.P513	0.000	NULL	pfscan_Peptidase_C19	-	no_errors	USPL1	HGNC	ENSG00000132952	83	0	0.00	29	4	12.12	-	-	-
WDR52	0	genome.wustl.edu	37	3	113010507	113010507	+	Nonsense_Mutation	SNP	G	G	T			TCGA-AO-A1KO-01A-31D-A188-09	TCGA-AO-A1KO-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2cdecb2b-40b1-4419-bcd9-101cee78966c	9c3bd11e-386d-4ad4-a8c4-73eae17d537e	3	113010507	113010507	G	T	SNP	WDR52	ENST00000393845	human	ensembl	69_37n	-1	known	nonsense	c.5462	p.S1821*	0.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR52	HGNC	ENSG00000206530	117	0	0.00	23	4	14.81	-	-	-
WDR72	0	genome.wustl.edu	37	15	54025306	54025306	+	Frame_Shift_Del	DEL	T	T	-			TCGA-AO-A1KO-01A-31D-A188-09	TCGA-AO-A1KO-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2cdecb2b-40b1-4419-bcd9-101cee78966c	9c3bd11e-386d-4ad4-a8c4-73eae17d537e	15	54025306	54025306	T	-	DEL	WDR72	ENST00000360509	human	ensembl	69_37n	-1	known	frame_shift_del	c.41	p.K14fs	0.944	smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR72	HGNC	ENSG00000166415	69	0	0.00	11	2	15.38	-	-	-
WWC3	0	genome.wustl.edu	37	X	10046872	10046872	+	Missense_Mutation	SNP	A	A	G			TCGA-AO-A1KO-01A-31D-A188-09	TCGA-AO-A1KO-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2cdecb2b-40b1-4419-bcd9-101cee78966c	9c3bd11e-386d-4ad4-a8c4-73eae17d537e	X	10046872	10046872	A	G	SNP	WWC3	ENST00000380861	human	ensembl	69_37n	+1	known	missense	c.254	p.D85G	1.000	NULL	superfamily_C2_Ca/lipid-bd_dom_CaLB	-	no_errors	WWC3	HGNC	ENSG00000047644	87	0	0.00	28	4	12.50	-	-	-
ZIC5	0	genome.wustl.edu	37	13	100622505	100622505	+	Frame_Shift_Del	DEL	T	T	-			TCGA-AO-A1KO-01A-31D-A188-09	TCGA-AO-A1KO-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2cdecb2b-40b1-4419-bcd9-101cee78966c	9c3bd11e-386d-4ad4-a8c4-73eae17d537e	13	100622505	100622505	T	-	DEL	ZIC5	ENST00000267294	human	ensembl	69_37n	-1	novel	frame_shift_del	c.1425	p.K475fs	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZIC5	HGNC	ENSG00000139800	52	0	0.00	14	2	12.50	-	-	-
ZNF337	0	genome.wustl.edu	37	20	25666719	25666720	+	Frame_Shift_Del	DEL	GG	GG	-			TCGA-AO-A1KO-01A-31D-A188-09	TCGA-AO-A1KO-10A-01D-A13O-09	GG	GG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2cdecb2b-40b1-4419-bcd9-101cee78966c	9c3bd11e-386d-4ad4-a8c4-73eae17d537e	20	25666719	25666720	GG	-	DEL	ZNF337	ENST00000252979	human	ensembl	69_37n	-1	known	frame_shift_del	c.67_66	p.Q23fs	0.001:0.001	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF337	HGNC	ENSG00000130684	24	0	0.00	6	2	25.00	-	-	-
ZNF354C	0	genome.wustl.edu	37	5	178506093	178506093	+	Silent	SNP	A	A	G			TCGA-AO-A1KO-01A-31D-A188-09	TCGA-AO-A1KO-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2cdecb2b-40b1-4419-bcd9-101cee78966c	9c3bd11e-386d-4ad4-a8c4-73eae17d537e	5	178506093	178506093	A	G	SNP	ZNF354C	ENST00000315475	human	ensembl	69_37n	+1	known	silent	c.660	p.E220	0.023	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF354C	HGNC	ENSG00000177932	46	0	0.00	27	4	12.90	-	-	-
ZSCAN2	0	genome.wustl.edu	37	15	85164374	85164374	+	Silent	SNP	C	C	T			TCGA-AO-A1KO-01A-31D-A188-09	TCGA-AO-A1KO-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2cdecb2b-40b1-4419-bcd9-101cee78966c	9c3bd11e-386d-4ad4-a8c4-73eae17d537e	15	85164374	85164374	C	T	SNP	ZSCAN2	ENST00000448803	human	ensembl	69_37n	+1	known	silent	c.948	p.S316	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZSCAN2	HGNC	ENSG00000176371	60	0	0.00	16	4	20.00	-	-	-
