Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
AQP12A	0	genome.wustl.edu	37	2	241631413	241631413	+	Missense_Mutation	SNP	T	T	G			TCGA-AQ-A1H2-01A-11D-A13L-09	TCGA-AQ-A1H2-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ab2dc63-51ce-4a96-b7ad-f0d9eb198d10	164f69db-8ade-412a-935c-2f2b05203616	2	241631413	241631413	T	G	SNP	AQP12A	ENST00000429564	human	ensembl	69_37n	+1	known	missense	c.83	p.L28R	0.987	pirsf_Aquaporin_11/12,prints_Aquaporin_12	pfam_MIP,superfamily_Aquaporin-like,pirsf_Aquaporin_11/12,prints_Aquaporin_12,prints_MIP	-	no_errors	AQP12A	HGNC	ENSG00000184945	8	0	0.00	52	27	33.75	-	-	-
C16orf3	0	genome.wustl.edu	37	16	90095597	90095597	+	Missense_Mutation	SNP	T	T	C			TCGA-AQ-A1H2-01A-11D-A13L-09	TCGA-AQ-A1H2-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ab2dc63-51ce-4a96-b7ad-f0d9eb198d10	164f69db-8ade-412a-935c-2f2b05203616	16	90095597	90095597	T	C	SNP	C16orf3	ENST00000408886	human	ensembl	69_37n	-1	known	missense	c.154	p.I52V	0.000	NULL	NULL	-	no_errors	C16orf3	HGNC	ENSG00000221819	12	0	0.00	8	8	47.06	-	-	-
CLSPN	0	genome.wustl.edu	37	1	36204752	36204752	+	Nonsense_Mutation	SNP	G	G	A			TCGA-AQ-A1H2-01A-11D-A13L-09	TCGA-AQ-A1H2-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ab2dc63-51ce-4a96-b7ad-f0d9eb198d10	164f69db-8ade-412a-935c-2f2b05203616	1	36204752	36204752	G	A	SNP	CLSPN	ENST00000318121	human	ensembl	69_37n	-1	known	nonsense	c.3415	p.R1139*	1.000	NULL	NULL	-	no_errors	CLSPN	HGNC	ENSG00000092853	53	0	0.00	48	28	36.84	-	-	-
COL9A2	0	genome.wustl.edu	37	1	40778134	40778134	+	Missense_Mutation	SNP	T	T	A			TCGA-AQ-A1H2-01A-11D-A13L-09	TCGA-AQ-A1H2-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ab2dc63-51ce-4a96-b7ad-f0d9eb198d10	164f69db-8ade-412a-935c-2f2b05203616	1	40778134	40778134	T	A	SNP	COL9A2	ENST00000417105	human	ensembl	69_37n	-1	putative	missense	c.322	p.T108S	1.000	pfam_Collagen	pfam_Collagen	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	COL9A2	HGNC	ENSG00000049089	79	0	0.00	52	39	42.86	-	-	-
CPLX2	0	genome.wustl.edu	37	5	175307021	175307021	+	Silent	SNP	G	G	A			TCGA-AQ-A1H2-01A-11D-A13L-09	TCGA-AQ-A1H2-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ab2dc63-51ce-4a96-b7ad-f0d9eb198d10	164f69db-8ade-412a-935c-2f2b05203616	5	175307021	175307021	G	A	SNP	CPLX2	ENST00000359546	human	ensembl	69_37n	+1	known	silent	c.378	p.G126	0.998	pfam_Synaphin	pfam_Synaphin	-	no_errors	CPLX2	HGNC	ENSG00000145920	37	0	0.00	32	26	44.07	-	-	-
DCLRE1A	0	genome.wustl.edu	37	10	115607027	115607027	+	Silent	SNP	T	T	C			TCGA-AQ-A1H2-01A-11D-A13L-09	TCGA-AQ-A1H2-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ab2dc63-51ce-4a96-b7ad-f0d9eb198d10	164f69db-8ade-412a-935c-2f2b05203616	10	115607027	115607027	T	C	SNP	DCLRE1A	ENST00000361384	human	ensembl	69_37n	-1	known	silent	c.2193	p.T731	0.996	NULL	pfam_DRMBL	-	no_errors	DCLRE1A	HGNC	ENSG00000198924	50	0	0.00	40	27	39.71	-	-	-
DIRC2	0	genome.wustl.edu	37	3	122578962	122578964	+	In_Frame_Del	DEL	CTC	CTC	-			TCGA-AQ-A1H2-01A-11D-A13L-09	TCGA-AQ-A1H2-10A-01D-A13O-09	CTC	CTC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ab2dc63-51ce-4a96-b7ad-f0d9eb198d10	164f69db-8ade-412a-935c-2f2b05203616	3	122578962	122578964	CTC	-	DEL	DIRC2	ENST00000261038	human	ensembl	69_37n	+1	known	in_frame_del	c.1051_1053	p.L353in_frame_del	1.000:1.000:1.000	superfamily_MFS_dom_general_subst_transpt	superfamily_MFS_dom_general_subst_transpt	-	no_errors	DIRC2	HGNC	ENSG00000138463	101	0	0.00	71	42	37.17	-	-	-
ENPP2	0	genome.wustl.edu	37	8	120598499	120598499	+	Missense_Mutation	SNP	G	G	A			TCGA-AQ-A1H2-01A-11D-A13L-09	TCGA-AQ-A1H2-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ab2dc63-51ce-4a96-b7ad-f0d9eb198d10	164f69db-8ade-412a-935c-2f2b05203616	8	120598499	120598499	G	A	SNP	ENPP2	ENST00000259486	human	ensembl	69_37n	-1	known	missense	c.1450	p.R484C	1.000	pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core	pfam_Phosphodiest/P_Trfase,pfam_Somatomedin_B_dom,pfam_DNA/RNA_non-sp_Endonuclease,superfamily_Alkaline_phosphatase_core,smart_Somatomedin_B_dom,smart_DNA/RNA_non-sp_Endonuclease,smart_Extracellular_endonuc_su_A,pfscan_Somatomedin_B_dom,prints_Somatomedin_B_chordata	-	no_errors	ENPP2	HGNC	ENSG00000136960	170	0	0.00	194	81	29.45	-	-	-
GPR113	0	genome.wustl.edu	37	2	26533779	26533779	+	Silent	SNP	C	C	T			TCGA-AQ-A1H2-01A-11D-A13L-09	TCGA-AQ-A1H2-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ab2dc63-51ce-4a96-b7ad-f0d9eb198d10	164f69db-8ade-412a-935c-2f2b05203616	2	26533779	26533779	C	T	SNP	GPR113	ENST00000333478	human	ensembl	69_37n	-1	known	silent	c.2220	p.V740	0.457	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like	pfam_GPCR_2_secretin-like,pfam_DUF3497,pfam_GPS_dom,pfam_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	GPR113	HGNC	ENSG00000173567	26	0	0.00	13	18	58.06	-	-	-
GRIK1	0	genome.wustl.edu	37	21	30909667	30909667	+	Missense_Mutation	SNP	A	A	G			TCGA-AQ-A1H2-01A-11D-A13L-09	TCGA-AQ-A1H2-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ab2dc63-51ce-4a96-b7ad-f0d9eb198d10	164f69db-8ade-412a-935c-2f2b05203616	21	30909667	30909667	A	G	SNP	GRIK1	ENST00000535441	human	ensembl	69_37n	-1	known	missense	c.2653	p.S885P	1.000	NULL	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIK1	HGNC	ENSG00000171189	43	0	0.00	39	23	37.10	-	-	-
KIF9	0	genome.wustl.edu	37	3	47308543	47308543	+	Missense_Mutation	SNP	A	A	C			TCGA-AQ-A1H2-01A-11D-A13L-09	TCGA-AQ-A1H2-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ab2dc63-51ce-4a96-b7ad-f0d9eb198d10	164f69db-8ade-412a-935c-2f2b05203616	3	47308543	47308543	A	C	SNP	KIF9	ENST00000265529	human	ensembl	69_37n	-1	known	missense	c.691	p.L231V	0.992	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF9	HGNC	ENSG00000088727	96	0	0.00	45	33	42.31	-	-	-
LPA	0	genome.wustl.edu	37	6	160962167	160962167	+	Missense_Mutation	SNP	C	C	G			TCGA-AQ-A1H2-01A-11D-A13L-09	TCGA-AQ-A1H2-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ab2dc63-51ce-4a96-b7ad-f0d9eb198d10	164f69db-8ade-412a-935c-2f2b05203616	6	160962167	160962167	C	G	SNP	LPA	ENST00000316300	human	ensembl	69_37n	-1	known	missense	c.5566	p.V1856L	1.000	pfam_Peptidase_S1_S6,pfam_Peptidase_S1A_nudel,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,prints_Peptidase_S1A,pfscan_Peptidase_S1_S6	pfam_Kringle,pfam_Peptidase_S1_S6,pfam_Peptidase_S1A_nudel,superfamily_Pept_cys/ser_Trypsin-like,superfamily_Kringle-like,smart_Kringle,smart_Peptidase_S1_S6,prints_Peptidase_S1A,pfscan_Kringle,pfscan_Peptidase_S1_S6	-	no_errors	LPA	HGNC	ENSG00000198670	62	0	0.00	54	36	40.00	-	-	-
LPCAT4	0	genome.wustl.edu	37	15	34654803	34654803	+	Nonsense_Mutation	SNP	A	A	T			TCGA-AQ-A1H2-01A-11D-A13L-09	TCGA-AQ-A1H2-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ab2dc63-51ce-4a96-b7ad-f0d9eb198d10	164f69db-8ade-412a-935c-2f2b05203616	15	34654803	34654803	A	T	SNP	LPCAT4	ENST00000314891	human	ensembl	69_37n	-1	known	nonsense	c.855	p.Y285*	1.000	NULL	pfam_Acyltransferase,smart_Acyltransferase	-	no_errors	LPCAT4	HGNC	ENSG00000176454	35	0	0.00	19	23	54.76	-	-	-
MC2R	0	genome.wustl.edu	37	18	13884764	13884764	+	Missense_Mutation	SNP	C	C	T			TCGA-AQ-A1H2-01A-11D-A13L-09	TCGA-AQ-A1H2-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ab2dc63-51ce-4a96-b7ad-f0d9eb198d10	164f69db-8ade-412a-935c-2f2b05203616	18	13884764	13884764	C	T	SNP	MC2R	ENST00000327606	human	ensembl	69_37n	-1	known	missense	c.754	p.A252T	0.121	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Melcrt_ACTH_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_ACTH_rcpt,prints_Melcrt_ACTH_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	MC2R	HGNC	ENSG00000185231	48	0	0.00	3	28	90.32	-	-	-
MDGA1	0	genome.wustl.edu	37	6	37619916	37619916	+	Missense_Mutation	SNP	C	C	G			TCGA-AQ-A1H2-01A-11D-A13L-09	TCGA-AQ-A1H2-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ab2dc63-51ce-4a96-b7ad-f0d9eb198d10	164f69db-8ade-412a-935c-2f2b05203616	6	37619916	37619916	C	G	SNP	MDGA1	ENST00000297153	human	ensembl	69_37n	-1	known	missense	c.1183	p.A395P	0.996	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_MAM_dom,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_MAM_dom,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Ig-like	-	no_errors	MDGA1	HGNC	ENSG00000112139	43	0	0.00	13	11	45.83	-	-	-
MLL3	0	genome.wustl.edu	37	7	152009002	152009002	+	Frame_Shift_Del	DEL	G	G	-			TCGA-AQ-A1H2-01A-11D-A13L-09	TCGA-AQ-A1H2-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ab2dc63-51ce-4a96-b7ad-f0d9eb198d10	164f69db-8ade-412a-935c-2f2b05203616	7	152009002	152009002	G	-	DEL	MLL3	ENST00000355193	human	ensembl	69_37n	-1	known	frame_shift_del	c.620	p.S207fs	0.932	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Znf_RING,smart_HMG_superfamily,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_DHHC_palmitoyltrfase,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	MLL3	HGNC	ENSG00000055609	38	0	0.00	16	30	60.00	-	-	-
MNT	0	genome.wustl.edu	37	17	2291304	2291304	+	Missense_Mutation	SNP	C	C	G			TCGA-AQ-A1H2-01A-11D-A13L-09	TCGA-AQ-A1H2-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ab2dc63-51ce-4a96-b7ad-f0d9eb198d10	164f69db-8ade-412a-935c-2f2b05203616	17	2291304	2291304	C	G	SNP	MNT	ENST00000174618	human	ensembl	69_37n	-1	known	missense	c.847	p.E283Q	1.000	superfamily_HLH_DNA-bd	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_errors	MNT	HGNC	ENSG00000070444	17	0	0.00	30	32	51.61	-	-	-
MYH15	0	genome.wustl.edu	37	3	108129757	108129757	+	Nonsense_Mutation	SNP	G	G	A			TCGA-AQ-A1H2-01A-11D-A13L-09	TCGA-AQ-A1H2-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ab2dc63-51ce-4a96-b7ad-f0d9eb198d10	164f69db-8ade-412a-935c-2f2b05203616	3	108129757	108129757	G	A	SNP	MYH15	ENST00000273353	human	ensembl	69_37n	-1	known	nonsense	c.4228	p.Q1410*	1.000	pfam_Myosin_tail,superfamily_Lambda_DNA-bd_dom	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,superfamily_Prefoldin,superfamily_Lambda_DNA-bd_dom,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom	-	no_errors	MYH15	HGNC	ENSG00000144821	11	0	0.00	5	8	61.54	-	-	-
PCDHGA2	0	genome.wustl.edu	37	5	140718824	140718824	+	Missense_Mutation	SNP	T	T	A			TCGA-AQ-A1H2-01A-11D-A13L-09	TCGA-AQ-A1H2-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ab2dc63-51ce-4a96-b7ad-f0d9eb198d10	164f69db-8ade-412a-935c-2f2b05203616	5	140718824	140718824	T	A	SNP	PCDHGA2	ENST00000394576	human	ensembl	69_37n	+1	known	missense	c.286	p.C96S	1.000	pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHGA2	HGNC	ENSG00000081853	47	0	0.00	26	19	42.22	-	-	-
PHLPP2	0	genome.wustl.edu	37	16	71683564	71683565	+	Frame_Shift_Ins	INS	-	-	G			TCGA-AQ-A1H2-01A-11D-A13L-09	TCGA-AQ-A1H2-10A-01D-A13O-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ab2dc63-51ce-4a96-b7ad-f0d9eb198d10	164f69db-8ade-412a-935c-2f2b05203616	16	71683564	71683565	-	G	INS	PHLPP2	ENST00000356272	human	ensembl	69_37n	-1	known	frame_shift_ins	c.3201_3200	p.A1068fs	0.983:1.000	NULL	pfam_PP2C-like,pfam_Leu-rich_rpt,superfamily_PP2C-like,smart_Leu-rich_rpt_typical-subtyp,smart_PP2C-like	-	no_errors	PHLPP2	HGNC	ENSG00000040199	36	0	0.00	14	3	17.65	-	-	-
PHOX2B	0	genome.wustl.edu	37	4	41749389	41749389	+	Missense_Mutation	SNP	C	C	T			TCGA-AQ-A1H2-01A-11D-A13L-09	TCGA-AQ-A1H2-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ab2dc63-51ce-4a96-b7ad-f0d9eb198d10	164f69db-8ade-412a-935c-2f2b05203616	4	41749389	41749389	C	T	SNP	PHOX2B	ENST00000226382	human	ensembl	69_37n	-1	known	missense	c.406	p.D136N	1.000	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_Antifreeze_1	-	no_errors	PHOX2B	HGNC	ENSG00000109132	11	0	0.00	10	13	56.52	-	-	-
PIK3CA	0	genome.wustl.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G			TCGA-AQ-A1H2-01A-11D-A13L-09	TCGA-AQ-A1H2-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ab2dc63-51ce-4a96-b7ad-f0d9eb198d10	164f69db-8ade-412a-935c-2f2b05203616	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	+1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	60	0	0.00	40	17	29.82	-	-	-
PRPF6	0	genome.wustl.edu	37	20	62657296	62657296	+	Missense_Mutation	SNP	A	A	G			TCGA-AQ-A1H2-01A-11D-A13L-09	TCGA-AQ-A1H2-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ab2dc63-51ce-4a96-b7ad-f0d9eb198d10	164f69db-8ade-412a-935c-2f2b05203616	20	62657296	62657296	A	G	SNP	PRPF6	ENST00000266079	human	ensembl	69_37n	+1	known	missense	c.1913	p.N638S	1.000	smart_HAT	pfam_PRP1_N,smart_HAT,smart_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	PRPF6	HGNC	ENSG00000101161	20	0	0.00	26	18	40.91	-	-	-
ROBO1	0	genome.wustl.edu	37	3	78987810	78987810	+	Missense_Mutation	SNP	C	C	T			TCGA-AQ-A1H2-01A-11D-A13L-09	TCGA-AQ-A1H2-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ab2dc63-51ce-4a96-b7ad-f0d9eb198d10	164f69db-8ade-412a-935c-2f2b05203616	3	78987810	78987810	C	T	SNP	ROBO1	ENST00000464233	human	ensembl	69_37n	-1	known	missense	c.440	p.C147Y	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	ROBO1	HGNC	ENSG00000169855	79	0	0.00	51	37	42.05	-	-	-
SPEN	0	genome.wustl.edu	37	1	16261272	16261273	+	Frame_Shift_Ins	INS	-	-	CT			TCGA-AQ-A1H2-01A-11D-A13L-09	TCGA-AQ-A1H2-10A-01D-A13O-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ab2dc63-51ce-4a96-b7ad-f0d9eb198d10	164f69db-8ade-412a-935c-2f2b05203616	1	16261272	16261273	-	CT	INS	SPEN	ENST00000375759	human	ensembl	69_37n	+1	known	frame_shift_ins	c.8537_8538	p.E2846fs	1.000:0.920	NULL	pfam_RRM_dom,pfam_SPOC_C,superfamily_SPOC-like,smart_RRM_dom,pfscan_SPOC_met,pfscan_RRM_dom	-	no_errors	SPEN	HGNC	ENSG00000065526	44	0	0.00	7	23	76.67	-	-	-
SPRY3	0	genome.wustl.edu	37	X	155004063	155004063	+	Missense_Mutation	SNP	C	C	T			TCGA-AQ-A1H2-01A-11D-A13L-09	TCGA-AQ-A1H2-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ab2dc63-51ce-4a96-b7ad-f0d9eb198d10	164f69db-8ade-412a-935c-2f2b05203616	X	155004063	155004063	C	T	SNP	SPRY3	ENST00000302805	human	ensembl	69_37n	+1	known	missense	c.530	p.S177F	1.000	pfam_Sprouty	pfam_Sprouty	-	no_errors	SPRY3	HGNC	ENSG00000168939	144	0	0.00	81	65	44.52	-	-	-
TRAPPC1	0	genome.wustl.edu	37	17	7833976	7833976	+	Missense_Mutation	SNP	C	C	T			TCGA-AQ-A1H2-01A-11D-A13L-09	TCGA-AQ-A1H2-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ab2dc63-51ce-4a96-b7ad-f0d9eb198d10	164f69db-8ade-412a-935c-2f2b05203616	17	7833976	7833976	C	T	SNP	TRAPPC1	ENST00000303731	human	ensembl	69_37n	-1	known	missense	c.386	p.R129Q	0.994	pfam_Sybindin,superfamily_Longin-like_dom	pfam_Sybindin,superfamily_Longin-like_dom	-	no_errors	TRAPPC1	HGNC	ENSG00000170043	40	0	0.00	16	15	48.39	-	-	-
YY2	0	genome.wustl.edu	37	X	21874875	21874875	+	Silent	SNP	C	C	T			TCGA-AQ-A1H2-01A-11D-A13L-09	TCGA-AQ-A1H2-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1ab2dc63-51ce-4a96-b7ad-f0d9eb198d10	164f69db-8ade-412a-935c-2f2b05203616	X	21874875	21874875	C	T	SNP	YY2	ENST00000429584	human	ensembl	69_37n	+1	known	silent	c.273	p.C91	0.010	pirsf_TF_Yin_yang	smart_Znf_C2H2-like,pirsf_TF_Yin_yang,pfscan_Znf_C2H2	-	no_errors	YY2	HGNC	ENSG00000230797	28	0	0.00	21	13	38.24	-	-	-
