Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
ACSBG2	0	genome.wustl.edu	37	19	6183236	6183236	+	Silent	SNP	C	C	T			TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	19	6183236	6183236	C	T	SNP	ACSBG2	ENST00000252669	human	ensembl	69_37n	+1	known	silent	c.1275	p.S425	0.997	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSBG2	HGNC	ENSG00000130377	23	0	0.00	16	15	48.39	-	-	-
ADD2	0	genome.wustl.edu	37	2	70931513	70931513	+	Nonsense_Mutation	SNP	G	G	A			TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	2	70931513	70931513	G	A	SNP	ADD2	ENST00000264436	human	ensembl	69_37n	-1	known	nonsense	c.262	p.R88*	1.000	NULL	pfam_Aldolase_II/adducin_N,superfamily_Aldolase_II/adducin_N	-	no_errors	ADD2	HGNC	ENSG00000075340	22	0	0.00	7	12	63.16	-	-	-
AKT3	0	genome.wustl.edu	37	1	243727042	243727042	+	Missense_Mutation	SNP	G	G	C			TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	1	243727042	243727042	G	C	SNP	AKT3	ENST00000263826	human	ensembl	69_37n	-1	known	missense	c.928	p.P310A	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pleckstrin_homology,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_cat_dom	-	no_errors	AKT3	HGNC	ENSG00000117020	145	0	0.00	65	27	29.35	-	-	-
ALS2	0	genome.wustl.edu	37	2	202590162	202590162	+	Missense_Mutation	SNP	T	T	C			TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	2	202590162	202590162	T	C	SNP	ALS2	ENST00000439495	human	ensembl	69_37n	-1	known	missense	c.1225	p.N409D	1.000	pfam_MORN,smart_MORN	pfam_MORN,pfam_DH-domain,superfamily_DH-domain,smart_MORN,pfscan_DH-domain	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ALS2	HGNC	ENSG00000003393	129	0	0.00	37	62	62.63	-	-	-
ANKRD18B	0	genome.wustl.edu	37	9	33572347	33572347	+	Missense_Mutation	SNP	T	T	C			TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	9	33572347	33572347	T	C	SNP	ANKRD18B	ENST00000290943	human	ensembl	69_37n	+1	known	missense	c.3025	p.F1009L	0.000	NULL	pfam_DUF3496,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD18B	HGNC	ENSG00000230453	10	0	0.00	0	8	100.00	-	-	-
ANO2	0	genome.wustl.edu	37	12	5674793	5674793	+	Missense_Mutation	SNP	G	G	T			TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	12	5674793	5674793	G	T	SNP	ANO2	ENST00000356134	human	ensembl	69_37n	-1	known	missense	c.2661	p.N887K	0.884	pfam_Anoctamin	pfam_Anoctamin	-	no_errors	ANO2	HGNC	ENSG00000047617	31	0	0.00	42	19	31.15	-	-	-
AWAT1	0	genome.wustl.edu	37	X	69459753	69459753	+	Silent	SNP	C	C	T			TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	X	69459753	69459753	C	T	SNP	AWAT1	ENST00000374521	human	ensembl	69_37n	+1	known	silent	c.801	p.L267	0.704	pfam_DAGAT	pfam_DAGAT	-	no_errors	AWAT1	HGNC	ENSG00000204195	86	0	0.00	81	31	27.68	-	-	-
BCLAF1	0	genome.wustl.edu	37	6	136596775	136596776	+	Frame_Shift_Ins	INS	-	-	T			TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	6	136596775	136596776	-	T	INS	BCLAF1	ENST00000531224	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1747_1746	p.Q582fs	1.000:0.999	NULL	NULL	-	no_errors	BCLAF1	HGNC	ENSG00000029363	108	0	0.00	46	6	11.54	-	-	-
BICC1	0	genome.wustl.edu	37	10	60553276	60553276	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	10	60553276	60553276	G	A	SNP	BICC1	ENST00000373886	human	ensembl	69_37n	+1	known	missense	c.1080	p.M360I	1.000	NULL	pfam_KH_dom_type_1,pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_KH_dom,smart_SAM,pfscan_SAM,pfscan_KH_dom_type_1	-	no_errors	BICC1	HGNC	ENSG00000122870	223	0	0.00	203	60	22.73	-	-	-
BSDC1	0	genome.wustl.edu	37	1	32849538	32849538	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	1	32849538	32849538	C	T	SNP	BSDC1	ENST00000341071	human	ensembl	69_37n	-1	known	missense	c.301	p.V101M	1.000	NULL	pfam_BSD,smart_BSD,pfscan_BSD	-	no_errors	BSDC1	HGNC	ENSG00000160058	60	0	0.00	47	39	45.35	-	-	-
C11orf52	0	genome.wustl.edu	37	11	111789707	111789707	+	Missense_Mutation	SNP	G	G	C			TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	11	111789707	111789707	G	C	SNP	C11orf52	ENST00000278601	human	ensembl	69_37n	+1	known	missense	c.11	p.R4P	0.007	NULL	NULL	-	no_errors	C11orf52	HGNC	ENSG00000149300	43	0	0.00	19	36	64.29	-	-	-
CAP1	0	genome.wustl.edu	37	1	40525103	40525103	+	Missense_Mutation	SNP	C	C	G			TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	1	40525103	40525103	C	G	SNP	CAP1	ENST00000372792	human	ensembl	69_37n	+1	known	missense	c.85	p.R29G	0.709	pfam_Adenylate_cyclase-assoc_CAP_N	pfam_Adenylate_cyclase-assoc_CAP_N,pfam_Adenylate_cyclase-assoc_CAP_C,superfamily_Adenylate_cyclase-assoc_CAP_N,superfamily_Adenylate_cyclase-assoc_CAP_C,smart_CARP_motif	-	no_errors	CAP1	HGNC	ENSG00000131236	41	0	0.00	14	11	44.00	-	-	-
CD300A	0	genome.wustl.edu	37	17	72469868	72469868	+	Missense_Mutation	SNP	G	G	C			TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	17	72469868	72469868	G	C	SNP	CD300A	ENST00000360141	human	ensembl	69_37n	+1	known	missense	c.234	p.R78S	0.997	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like	-	no_errors	CD300A	HGNC	ENSG00000167851	47	0	0.00	64	8	11.11	-	-	-
CNIH	0	genome.wustl.edu	37	14	54896977	54896977	+	Splice_Site	SNP	A	A	C			TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	14	54896977	54896977	A	C	SNP	CNIH	ENST00000216416	human	ensembl	69_37n	-1	known	splice_site	c.407+2	e4+2	1.000	-	-	-	no_errors	CNIH	HGNC	ENSG00000100528	128	0	0.00	97	64	39.51	-	-	-
CNKSR3	0	genome.wustl.edu	37	6	154763259	154763259	+	Missense_Mutation	SNP	T	T	A			TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	6	154763259	154763259	T	A	SNP	CNKSR3	ENST00000367213	human	ensembl	69_37n	-1	known	missense	c.382	p.I128F	1.000	pfam_CRIC_domain_Chordata	pfam_CNKSR2,pfam_CRIC_domain_Chordata,pfam_SAM_type1,pfam_SAM_2,pfam_PDZ,superfamily_SAM/pointed,superfamily_PDZ,smart_SAM,smart_PDZ,pfscan_PDZ,pfscan_SAM	-	no_errors	CNKSR3	HGNC	ENSG00000153721	19	0	0.00	21	20	48.78	-	-	-
CRIP2	0	genome.wustl.edu	37	14	105945815	105945815	+	Missense_Mutation	SNP	C	C	G			TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	14	105945815	105945815	C	G	SNP	CRIP2	ENST00000329146	human	ensembl	69_37n	+1	known	missense	c.544	p.L182V	1.000	pfscan_Znf_LIM	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	CRIP2	HGNC	ENSG00000182809	20	0	0.00	7	11	61.11	-	-	-
DEFB113	0	genome.wustl.edu	37	6	49937333	49937333	+	Missense_Mutation	SNP	C	C	G			TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	6	49937333	49937333	C	G	SNP	DEFB113	ENST00000398718	human	ensembl	69_37n	-1	known	missense	c.6	p.K2N	0.984	NULL	NULL	-	no_errors	DEFB113	HGNC	ENSG00000214642	150	0	0.00	15	21	58.33	-	-	-
DYNC1I1	0	genome.wustl.edu	37	7	95726876	95726876	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	7	95726876	95726876	G	A	SNP	DYNC1I1	ENST00000324972	human	ensembl	69_37n	+1	known	missense	c.1909	p.E637K	1.000	NULL	pfam_Dynein_IC_1/2,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DYNC1I1	HGNC	ENSG00000158560	44	0	0.00	7	9	56.25	-	-	-
EIF3I	0	genome.wustl.edu	37	1	32691906	32691906	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	1	32691906	32691906	G	A	SNP	EIF3I	ENST00000373586	human	ensembl	69_37n	+1	known	missense	c.385	p.D129N	1.000	superfamily_WD40_repeat_dom,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	EIF3I	HGNC	ENSG00000084623	28	0	0.00	28	33	53.23	-	-	-
EPHA10	0	genome.wustl.edu	37	1	38185168	38185168	+	Silent	SNP	T	T	G			TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	1	38185168	38185168	T	G	SNP	EPHA10	ENST00000427468	human	ensembl	69_37n	-1	known	silent	c.2674	p.R892	1.000	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_cat_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_SAM/pointed,superfamily_Fibronectin_type3,superfamily_Growth_fac_rcpt,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_cat_dom	-	no_errors	EPHA10	HGNC	ENSG00000183317	13	0	0.00	16	6	27.27	-	-	-
ETV1	0	genome.wustl.edu	37	7	13946060	13946060	+	Missense_Mutation	SNP	C	C	G			TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	7	13946060	13946060	C	G	SNP	ETV1	ENST00000405218	human	ensembl	69_37n	-1	known	missense	c.1105	p.E369Q	1.000	pfam_Ets,smart_Ets,pfscan_Ets,prints_Ets	pfam_ETS_PEA3_N,pfam_Ets,smart_Ets,pfscan_Ets,prints_Ets	-	no_errors	ETV1	HGNC	ENSG00000006468	77	0	0.00	13	23	63.89	-	-	-
F8	0	genome.wustl.edu	37	X	154159895	154159895	+	Silent	SNP	A	A	G			TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	X	154159895	154159895	A	G	SNP	F8	ENST00000360256	human	ensembl	69_37n	-1	known	silent	c.2170	p.L724	1.000	superfamily_Cupredoxin	pfam_Coagulation_fac_5/8-C_type_dom,pfam_Cu-oxidase_3,pfam_Cu-oxidase_2,superfamily_Galactose-bd-like,superfamily_Cupredoxin,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	-	no_errors	F8	HGNC	ENSG00000185010	68	0	0.00	28	46	62.16	-	-	-
F8	0	genome.wustl.edu	37	X	154194287	154194287	+	Missense_Mutation	SNP	G	G	C			TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	X	154194287	154194287	G	C	SNP	F8	ENST00000360256	human	ensembl	69_37n	-1	known	missense	c.1401	p.I467M	0.980	pfam_Cu-oxidase_3,superfamily_Cupredoxin	pfam_Coagulation_fac_5/8-C_type_dom,pfam_Cu-oxidase_3,pfam_Cu-oxidase_2,superfamily_Galactose-bd-like,superfamily_Cupredoxin,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	-	no_errors	F8	HGNC	ENSG00000185010	138	1	0.72	127	16	11.11	-	-	-
FAAH2	0	genome.wustl.edu	37	X	57358158	57358158	+	Silent	SNP	T	T	C			TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	X	57358158	57358158	T	C	SNP	FAAH2	ENST00000374900	human	ensembl	69_37n	+1	known	silent	c.540	p.C180	1.000	pfam_Amidase,superfamily_Amidase_dom	pfam_Amidase,superfamily_Amidase_dom	-	no_errors	FAAH2	HGNC	ENSG00000165591	79	0	0.00	20	11	35.48	-	-	-
GRIN2A	0	genome.wustl.edu	37	16	9857875	9857875	+	Nonsense_Mutation	SNP	C	C	A			TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	16	9857875	9857875	C	A	SNP	GRIN2A	ENST00000330684	human	ensembl	69_37n	-1	known	nonsense	c.3526	p.E1176*	0.976	pfam_NMDAR2_C	pfam_NMDAR2_C,pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,pfam_ANF_lig-bd_rcpt,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIN2A	HGNC	ENSG00000183454	32	0	0.00	4	16	80.00	-	-	-
HDAC10	0	genome.wustl.edu	37	22	50688545	50688545	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	22	50688545	50688545	C	T	SNP	HDAC10	ENST00000415993	human	ensembl	69_37n	-1	known	missense	c.239	p.S80N	1.000	NULL	NULL	-	no_errors	HDAC10	HGNC	ENSG00000100429	12	0	0.00	11	14	56.00	-	-	-
HERC2	0	genome.wustl.edu	37	15	28446656	28446656	+	Silent	SNP	T	T	A			TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	15	28446656	28446656	T	A	SNP	HERC2	ENST00000261609	human	ensembl	69_37n	-1	known	silent	c.7662	p.R2554	1.000	pfam_CPH_domain	pfam_Reg_chr_condens,pfam_HECT,pfam_CPH_domain,pfam_Mib_Herc2,pfam_Cyt_B5,pfam_Znf_ZZ,pfam_APC_su10/DOC_dom,superfamily_Reg_csome_cond/b-lactamase_inh,superfamily_HECT,superfamily_Galactose-bd-like,superfamily_Cyt_B5,superfamily_UBA-like,superfamily_CUB,smart_Beta-propeller_rpt_TECPR,smart_Znf_ZZ,smart_HECT,pfscan_HECT,pfscan_Znf_ZZ,pfscan_Reg_chr_condens,pfscan_Cyt_B5,prints_Reg_chr_condens	-	no_errors	HERC2	HGNC	ENSG00000128731	126	0	0.00	57	87	60.00	-	-	-
HNF4A	0	genome.wustl.edu	37	20	43036067	43036067	+	Missense_Mutation	SNP	C	C	G			TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	20	43036067	43036067	C	G	SNP	HNF4A	ENST00000316099	human	ensembl	69_37n	+1	known	missense	c.337	p.R113G	0.990	pfam_Znf_hrmn_rcpt,smart_Znf_hrmn_rcpt,pfscan_Znf_hrmn_rcpt,prints_Znf_hrmn_rcpt	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_COUP_TF,prints_Retinoid-X_rcpt/HNF4	-	no_errors	HNF4A	HGNC	ENSG00000101076	14	0	0.00	6	10	62.50	-	-	-
HYDIN	0	genome.wustl.edu	37	16	70993566	70993566	+	Silent	SNP	A	A	G			TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	16	70993566	70993566	A	G	SNP	HYDIN	ENST00000316490	human	ensembl	69_37n	-1	known	silent	c.6123	p.H2041	0.953	NULL	superfamily_PapD-like	-	no_errors	HYDIN	HGNC	ENSG00000157423	13	0	0.00	2	3	60.00	-	-	-
IDI1	0	genome.wustl.edu	37	10	1094816	1094816	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	10	1094816	1094816	C	T	SNP	IDI1	ENST00000381344	human	ensembl	69_37n	-1	known	missense	c.128	p.R43Q	0.001	NULL	pfam_NUDIX_hydrolase_dom,superfamily_NUDIX_hydrolase_dom-like,pirsf_IsopentenylPP_isomerase_typ1,tigrfam_IsopentenylPP_isomerase_typ1	-	no_errors	IDI1	HGNC	ENSG00000067064	9	0	0.00	2	5	71.43	-	-	-
IFIT5	0	genome.wustl.edu	37	10	91177984	91177984	+	Missense_Mutation	SNP	A	A	G			TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	10	91177984	91177984	A	G	SNP	IFIT5	ENST00000371795	human	ensembl	69_37n	+1	known	missense	c.1028	p.D343G	1.000	smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	pfam_TPR_2,pfam_TPR-1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	IFIT5	HGNC	ENSG00000152778	53	0	0.00	37	26	40.62	-	-	-
IKBKE	0	genome.wustl.edu	37	1	206650162	206650162	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	1	206650162	206650162	C	T	SNP	IKBKE	ENST00000367120	human	ensembl	69_37n	+1	known	missense	c.682	p.R228W	0.723	pfam_Prot_kinase_cat_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	IKBKE	HGNC	ENSG00000143466	20	0	0.00	17	5	21.74	-	-	-
KANSL3	0	genome.wustl.edu	37	2	97267392	97267392	+	Silent	SNP	G	G	A			TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	2	97267392	97267392	G	A	SNP	KANSL3	ENST00000431828	human	ensembl	69_37n	-1	known	silent	c.2604	p.P868	0.920	NULL	NULL	-	no_errors	KANSL3	HGNC	ENSG00000114982	16	0	0.00	15	11	42.31	-	-	-
KCNC2	0	genome.wustl.edu	37	12	75441951	75441951	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	12	75441951	75441951	C	T	SNP	KCNC2	ENST00000549446	human	ensembl	69_37n	-1	known	missense	c.1762	p.D588N	1.000	NULL	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_Ion_trans_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv3,prints_K_chnl_volt-dep_Kv	-	no_errors	KCNC2	HGNC	ENSG00000166006	57	0	0.00	11	16	59.26	-	-	-
KCNJ8	0	genome.wustl.edu	37	12	21919255	21919255	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	12	21919255	21919255	C	T	SNP	KCNJ8	ENST00000240662	human	ensembl	69_37n	-1	known	missense	c.677	p.R226H	1.000	pfam_K_chnl_inward-rec_Kir_Cr2,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir	pfam_K_chnl_inward-rec_Kir_Cr2,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir_Cr2,prints_K_chnl_inward-rec_Kir6.1	-	no_errors	KCNJ8	HGNC	ENSG00000121361	34	0	0.00	16	11	40.74	-	-	-
KIAA0232	0	genome.wustl.edu	37	4	6863899	6863899	+	Missense_Mutation	SNP	G	G	C			TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	4	6863899	6863899	G	C	SNP	KIAA0232	ENST00000307659	human	ensembl	69_37n	+1	known	missense	c.1790	p.S597T	1.000	NULL	NULL	-	no_errors	KIAA0232	HGNC	ENSG00000170871	67	0	0.00	5	12	70.59	-	-	-
KIAA1683	0	genome.wustl.edu	37	19	18377840	18377840	+	Missense_Mutation	SNP	C	C	A			TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	19	18377840	18377840	C	A	SNP	KIAA1683	ENST00000392413	human	ensembl	69_37n	-1	known	missense	c.510	p.Q170H	0.997	NULL	pfam_IQ_motif_EF-hand-BS,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS	-	no_errors	KIAA1683	HGNC	ENSG00000130518	11	0	0.00	19	14	42.42	-	-	-
KRT14	0	genome.wustl.edu	37	17	39740663	39740663	+	Missense_Mutation	SNP	T	T	C			TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	17	39740663	39740663	T	C	SNP	KRT14	ENST00000167586	human	ensembl	69_37n	-1	known	missense	c.611	p.Y204C	0.939	pfam_F,prints_Keratin_I	pfam_F,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	KRT14	HGNC	ENSG00000186847	27	0	0.00	9	20	68.97	-	-	-
LAMA3	0	genome.wustl.edu	37	18	21481288	21481288	+	Splice_Site	SNP	G	G	T			TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	18	21481288	21481288	G	T	SNP	LAMA3	ENST00000313654	human	ensembl	69_37n	+1	known	splice_site	c.6201+1	e48+1	1.000	-	-	-	no_errors	LAMA3	HGNC	ENSG00000053747	30	0	0.00	18	13	41.94	-	-	-
MAGEC3	0	genome.wustl.edu	37	X	140969432	140969432	+	Silent	SNP	A	A	G			TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	X	140969432	140969432	A	G	SNP	MAGEC3	ENST00000298296	human	ensembl	69_37n	+1	known	silent	c.759	p.V253	0.000	pfam_MAGE,pfscan_MAGE	pfam_MAGE,pfscan_MAGE	-	no_errors	MAGEC3	HGNC	ENSG00000165509	66	0	0.00	92	33	26.19	-	-	-
MAMLD1	0	genome.wustl.edu	37	X	149639246	149639246	+	Silent	SNP	C	C	A			TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	X	149639246	149639246	C	A	SNP	MAMLD1	ENST00000432680	human	ensembl	69_37n	+1	known	silent	c.1326	p.G442	0.027	NULL	NULL	-	no_errors	MAMLD1	HGNC	ENSG00000013619	20	0	0.00	14	17	53.12	-	-	-
MAN2A1	0	genome.wustl.edu	37	5	109200756	109200756	+	Missense_Mutation	SNP	A	A	G			TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	5	109200756	109200756	A	G	SNP	MAN2A1	ENST00000261483	human	ensembl	69_37n	+1	known	missense	c.3191	p.N1064S	0.602	pfam_Glyco_hydro_38_C,superfamily_Glyco_hydro-type_carb-bd	pfam_Glyco_hydro_38_core,pfam_Glyco_hydro_38_C,pfam_Glyco_hydro_38_cen_dom,superfamily_Glyco_hydro-type_carb-bd,superfamily_Glyco_hydro/deAcase_b/a-brl,smart_Glyco_hydro_38_cen_dom	-	no_errors	MAN2A1	HGNC	ENSG00000112893	77	0	0.00	9	15	62.50	-	-	-
MAPKBP1	0	genome.wustl.edu	37	15	42113197	42113197	+	Silent	SNP	G	G	C			TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	15	42113197	42113197	G	C	SNP	MAPKBP1	ENST00000456763	human	ensembl	69_37n	+1	known	silent	c.2667	p.S889	0.006	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	MAPKBP1	HGNC	ENSG00000137802	9	0	0.00	2	5	71.43	-	-	-
MET	0	genome.wustl.edu	37	7	116340214	116340216	+	In_Frame_Del	DEL	GAT	GAT	-			TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	GAT	GAT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	7	116340214	116340216	GAT	-	DEL	MET	ENST00000318493	human	ensembl	69_37n	+1	known	in_frame_del	c.1076_1078	p.RS359in_frame_delP	1.000:1.000:1.000	pirsf_Tyr_kinase_HGF/MSP_rcpt,pfam_Semaphorin/CD100_Ag,superfamily_Semaphorin/CD100_Ag,smart_Semaphorin/CD100_Ag,pfscan_Semaphorin/CD100_Ag	pirsf_Tyr_kinase_HGF/MSP_rcpt,pfam_Semaphorin/CD100_Ag,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_IPT_TIG_rcpt,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Kinase-like_dom,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_IPT_TIG_rcpt,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Semaphorin/CD100_Ag,pfscan_Prot_kinase_cat_dom	-	no_errors	MET	HGNC	ENSG00000105976	25	0	0.00	16	6	27.27	-	-	-
MET	0	genome.wustl.edu	37	7	116340219	116340221	+	In_Frame_Del	DEL	GCC	GCC	-			TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	GCC	GCC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	7	116340219	116340221	GCC	-	DEL	MET	ENST00000318493	human	ensembl	69_37n	+1	known	in_frame_del	c.1081_1083	p.A361in_frame_del	1.000:1.000:0.022	pirsf_Tyr_kinase_HGF/MSP_rcpt,pfam_Semaphorin/CD100_Ag,superfamily_Semaphorin/CD100_Ag,smart_Semaphorin/CD100_Ag,pfscan_Semaphorin/CD100_Ag	pirsf_Tyr_kinase_HGF/MSP_rcpt,pfam_Semaphorin/CD100_Ag,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_IPT_TIG_rcpt,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Kinase-like_dom,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_IPT_TIG_rcpt,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Semaphorin/CD100_Ag,pfscan_Prot_kinase_cat_dom	-	no_errors	MET	HGNC	ENSG00000105976	25	0	0.00	16	6	25.00	-	-	-
MET	0	genome.wustl.edu	37	7	116340222	116340223	+	Frame_Shift_Ins	INS	-	-	T			TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	7	116340222	116340223	-	T	INS	MET	ENST00000318493	human	ensembl	69_37n	+1	known	frame_shift_ins	c.1084_1085	p.M362fs	0.551:1.000	pirsf_Tyr_kinase_HGF/MSP_rcpt,pfam_Semaphorin/CD100_Ag,superfamily_Semaphorin/CD100_Ag,smart_Semaphorin/CD100_Ag,pfscan_Semaphorin/CD100_Ag	pirsf_Tyr_kinase_HGF/MSP_rcpt,pfam_Semaphorin/CD100_Ag,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_IPT_TIG_rcpt,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Kinase-like_dom,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_IPT_TIG_rcpt,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Semaphorin/CD100_Ag,pfscan_Prot_kinase_cat_dom	-	no_errors	MET	HGNC	ENSG00000105976	25	0	0.00	17	7	29.17	-	-	-
MMS19	0	genome.wustl.edu	37	10	99220677	99220677	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	10	99220677	99220677	G	A	SNP	MMS19	ENST00000370782	human	ensembl	69_37n	-1	known	missense	c.2399	p.T800I	1.000	superfamily_ARM-type_fold	pfam_Tscrpt_MMS19_N,superfamily_ARM-type_fold	-	no_errors	MMS19	HGNC	ENSG00000155229	20	0	0.00	16	14	46.67	-	-	-
NF2	0	genome.wustl.edu	37	22	30057312	30057312	+	Nonsense_Mutation	SNP	C	C	A			TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	22	30057312	30057312	C	A	SNP	NF2	ENST00000338641	human	ensembl	69_37n	+1	known	nonsense	c.794	p.S265*	1.000	pirsf_ERM,pfam_FERM_PH-like_C,pfscan_FERM_domain	pirsf_ERM,pfam_ERM_C,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM_N,superfamily_FERM_central,superfamily_Moesin,smart_Band_41_domain,prints_Ez/rad/moesin,prints_Band_41_fam,prints_Tropomyosin,pfscan_FERM_domain	-	no_errors	NF2	HGNC	ENSG00000186575	48	0	0.00	12	19	61.29	-	-	-
NKTR	0	genome.wustl.edu	37	3	42678448	42678448	+	Missense_Mutation	SNP	C	C	A			TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	3	42678448	42678448	C	A	SNP	NKTR	ENST00000232978	human	ensembl	69_37n	+1	known	missense	c.1252	p.L418I	0.000	NULL	pfam_Cyclophilin-like_PPIase_dom,superfamily_Cyclophilin-like_PPIase_dom,prints_Cyclophilin-like_PPIase_dom,pfscan_Cyclophilin-like_PPIase_dom	-	no_errors	NKTR	HGNC	ENSG00000114857	52	0	0.00	55	23	29.49	-	-	-
NOX3	0	genome.wustl.edu	37	6	155750119	155750119	+	Silent	SNP	C	C	T			TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	6	155750119	155750119	C	T	SNP	NOX3	ENST00000159060	human	ensembl	69_37n	-1	known	silent	c.954	p.A318	0.147	pfam_FAD-bd_8,pfam_OxRdtase_FAD-bd_dom,superfamily_Riboflavin_synthase-like_b-brl	pfam_Fe_red_NAD-bd_6,pfam_FAD-bd_8,pfam_Fe3_Rdtase_TM_dom,pfam_OxRdtase_FAD-bd_dom,superfamily_Riboflavin_synthase-like_b-brl,prints_Cyt_b245_heavy_chain	-	no_errors	NOX3	HGNC	ENSG00000074771	19	0	0.00	14	9	39.13	-	-	-
ODF1	0	genome.wustl.edu	37	8	103572897	103572898	+	Frame_Shift_Del	DEL	TG	TG	-			TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	TG	TG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	8	103572897	103572898	TG	-	DEL	ODF1	ENST00000285402	human	ensembl	69_37n	+1	known	frame_shift_del	c.538_539	p.V181fs	0.120:0.137	pfam_Hsp20,superfamily_HSP20-like_chaperone,pfscan_Hsp20	pfam_Hsp20,superfamily_HSP20-like_chaperone,pfscan_Hsp20	-	no_errors	ODF1	HGNC	ENSG00000155087	34	0	0.00	38	13	25.00	-	-	-
OR2D2	0	genome.wustl.edu	37	11	6913043	6913044	+	Frame_Shift_Ins	INS	-	-	T			TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	11	6913043	6913044	-	T	INS	OR2D2	ENST00000299459	human	ensembl	69_37n	-1	known	frame_shift_ins	c.689_688	p.S230fs	0.833:0.817	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt	-	no_errors	OR2D2	HGNC	ENSG00000166368	49	0	0.00	13	2	13.33	-	-	-
OR8D1	0	genome.wustl.edu	37	11	124179975	124179976	+	Frame_Shift_Ins	INS	-	-	AT			TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	11	124179975	124179976	-	AT	INS	OR8D1	ENST00000357821	human	ensembl	69_37n	-1	known	frame_shift_ins	c.688_687	p.S229fs	0.020:0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR8D1	HGNC	ENSG00000196341	50	0	0.00	16	2	11.11	-	-	-
PASD1	0	genome.wustl.edu	37	X	150844587	150844587	+	Missense_Mutation	SNP	A	A	G			TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	X	150844587	150844587	A	G	SNP	PASD1	ENST00000370357	human	ensembl	69_37n	+1	known	missense	c.2294	p.E765G	0.002	NULL	smart_PAS,pfscan_PAS	-	no_errors	PASD1	HGNC	ENSG00000166049	37	0	0.00	36	13	26.53	-	-	-
PDIA5	0	genome.wustl.edu	37	3	122811242	122811242	+	Silent	SNP	G	G	A			TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	3	122811242	122811242	G	A	SNP	PDIA5	ENST00000316218	human	ensembl	69_37n	+1	known	silent	c.210	p.V70	1.000	superfamily_Thioredoxin-like_fold	pfam_Thioredoxin_domain,pfam_AhpC/TSA,superfamily_Thioredoxin-like_fold,prints_Thioredoxin	-	no_errors	PDIA5	HGNC	ENSG00000065485	39	0	0.00	12	30	71.43	-	-	-
PRKCI	0	genome.wustl.edu	37	3	170015134	170015134	+	Missense_Mutation	SNP	G	G	C			TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	3	170015134	170015134	G	C	SNP	PRKCI	ENST00000295797	human	ensembl	69_37n	+1	known	missense	c.1540	p.A514P	1.000	pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_PKC_zeta,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_OPR_PB1,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_OPR_PB1,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_PKC_zeta,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom,prints_DAG/PE-bd	-	no_errors	PRKCI	HGNC	ENSG00000163558	71	0	0.00	27	76	73.79	-	-	-
PROX2	0	genome.wustl.edu	37	14	75329523	75329523	+	Missense_Mutation	SNP	G	G	T			TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	14	75329523	75329523	G	T	SNP	PROX2	ENST00000445876	human	ensembl	69_37n	-1	known	missense	c.1015	p.H339N	0.070	NULL	pfam_Prox1,superfamily_Homeodomain-like	-	no_errors	PROX2	HGNC	ENSG00000119608	45	0	0.00	14	26	63.41	-	-	-
PRUNE2	0	genome.wustl.edu	37	9	79320287	79320287	+	Missense_Mutation	SNP	G	G	C			TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	9	79320287	79320287	G	C	SNP	PRUNE2	ENST00000428286	human	ensembl	69_37n	-1	known	missense	c.5826	p.H1942Q	0.998	NULL	pfam_Bcl2-/adenovirus-E1B,pfam_CRAL-TRIO_dom,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom	-	no_errors	PRUNE2	HGNC	ENSG00000106772	24	0	0.00	15	11	42.31	-	-	-
PTPN20C	0	genome.wustl.edu	37	10	49313245	49313245	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	10	49313245	49313245	C	T	SNP	PTPN20C	ENST00000455582	human	ensembl	69_37n	-1	known	missense	c.295	p.E99K	0.002	NULL	NULL	-	no_stop_codon:bad_bp_length_for_coding_region	PTPN20C	HGNC	ENSG00000126542	29	0	0.00	10	5	33.33	-	-	-
PVRL3	0	genome.wustl.edu	37	3	110852796	110852796	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	3	110852796	110852796	G	A	SNP	PVRL3	ENST00000485303	human	ensembl	69_37n	+1	known	missense	c.1384	p.E462K	1.000	NULL	pfam_CD80_C2-set,pfam_Ig_V-set,pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like	-	no_errors	PVRL3	HGNC	ENSG00000177707	56	0	0.00	23	23	50.00	-	-	-
ROBO1	0	genome.wustl.edu	37	3	78734951	78734951	+	Missense_Mutation	SNP	C	C	A			TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	3	78734951	78734951	C	A	SNP	ROBO1	ENST00000464233	human	ensembl	69_37n	-1	known	missense	c.1287	p.Q429H	1.000	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	ROBO1	HGNC	ENSG00000169855	48	0	0.00	32	35	52.24	-	-	-
RPGR	0	genome.wustl.edu	37	X	38145271	38145272	+	In_Frame_Ins	INS	-	-	CCC			TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	X	38145271	38145272	-	CCC	INS	RPGR	ENST00000378505	human	ensembl	69_37n	-1	known	in_frame_ins	c.2981_2980	p.994in_frame_insG	0.060:0.135	NULL	pfam_Reg_chr_condens,superfamily_Reg_csome_cond/b-lactamase_inh,pfscan_Reg_chr_condens,prints_Reg_chr_condens	-	no_errors	RPGR	HGNC	ENSG00000156313	39	0	0.00	19	3	13.64	-	-	-
SCFD2	0	genome.wustl.edu	37	4	54231620	54231620	+	Silent	SNP	A	A	T			TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	4	54231620	54231620	A	T	SNP	SCFD2	ENST00000401642	human	ensembl	69_37n	-1	known	silent	c.489	p.V163	0.002	NULL	pfam_Sec1-like,superfamily_Sec1-like	-	no_errors	SCFD2	HGNC	ENSG00000184178	18	0	0.00	45	18	28.12	-	-	-
SCN1A	0	genome.wustl.edu	37	2	166848260	166848260	+	Frame_Shift_Del	DEL	G	G	-			TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	2	166848260	166848260	G	-	DEL	SCN1A	ENST00000303395	human	ensembl	69_37n	-1	known	frame_shift_del	c.5525	p.P1842fs	1.000	NULL	pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,prints_Na_channel_a1su,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN1A	HGNC	ENSG00000144285	66	0	0.00	17	2	10.53	-	-	-
SLC23A1	0	genome.wustl.edu	37	5	138718947	138718947	+	Frame_Shift_Del	DEL	G	G	-			TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	5	138718947	138718947	G	-	DEL	SLC23A1	ENST00000508270	human	ensembl	69_37n	-1	putative	frame_shift_del	c.218	p.P73fs	0.076	NULL	pfam_Xant/urac/vitC	-	no_start_codon:no_stop_codon:bad_bp_length_for_coding_region	SLC23A1	HGNC	ENSG00000170482	9	0	0.00	4	2	33.33	-	-	-
SLC7A3	0	genome.wustl.edu	37	X	70149842	70149842	+	Silent	SNP	C	C	T			TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	X	70149842	70149842	C	T	SNP	SLC7A3	ENST00000298085	human	ensembl	69_37n	-1	known	silent	c.6	p.P2	0.801	tigrfam_Cat_AA_permease	pfam_AA-permease_dom,pirsf_AA/rel_permease1,tigrfam_Cat_AA_permease	-	no_errors	SLC7A3	HGNC	ENSG00000165349	9	0	0.00	10	6	37.50	-	-	-
SPEF2	0	genome.wustl.edu	37	5	35727923	35727923	+	Missense_Mutation	SNP	G	G	C			TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	5	35727923	35727923	G	C	SNP	SPEF2	ENST00000356031	human	ensembl	69_37n	+1	known	missense	c.3061	p.E1021Q	1.000	NULL	pfam_DUF1042,pfam_Adenylate_kin,pfam_HATC,superfamily_CH-domain,pfscan_CH-domain	-	no_errors	SPEF2	HGNC	ENSG00000152582	43	0	0.00	29	34	53.97	-	-	-
SSBP3	0	genome.wustl.edu	37	1	54722839	54722839	+	Silent	SNP	G	G	A			TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	1	54722839	54722839	G	A	SNP	SSBP3	ENST00000371320	human	ensembl	69_37n	-1	known	silent	c.468	p.Y156	0.983	pfam_SSDP_ss-bd	pfam_SSDP_ss-bd,smart_LisH_dimerisation,pfscan_LisH_dimerisation,prints_SSDP_DNA-bd	-	no_errors	SSBP3	HGNC	ENSG00000157216	19	0	0.00	28	14	33.33	-	-	-
TLN1	0	genome.wustl.edu	37	9	35711758	35711758	+	Missense_Mutation	SNP	G	G	C			TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	9	35711758	35711758	G	C	SNP	TLN1	ENST00000314888	human	ensembl	69_37n	-1	known	missense	c.3713	p.A1238G	1.000	pfam_Vinculin-bd_dom,superfamily_Vinculin/catenin	pfam_Talin_cent,pfam_Vinculin-bd_dom,pfam_ILWEQ,pfam_FERM_N,pfam_FERM_central,pfam_Insln_rcpt_S1,superfamily_Talin_cent,superfamily_Vinculin/catenin,superfamily_FERM_central,smart_Band_41_domain,smart_ILWEQ,pfscan_FERM_domain,pfscan_ILWEQ	-	no_errors	TLN1	HGNC	ENSG00000137076	15	0	0.00	4	10	71.43	-	-	-
TPR	0	genome.wustl.edu	37	1	186321122	186321122	+	Missense_Mutation	SNP	G	G	T			TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	1	186321122	186321122	G	T	SNP	TPR	ENST00000367478	human	ensembl	69_37n	-1	known	missense	c.2455	p.L819M	1.000	NULL	pfam_TPR_MLP1_2,superfamily_Prefoldin,superfamily_tRNA-bd_arm	-	no_errors	TPR	HGNC	ENSG00000047410	257	0	0.00	270	137	33.58	-	-	-
TRPM6	0	genome.wustl.edu	37	9	77435320	77435320	+	Missense_Mutation	SNP	T	T	G			TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	9	77435320	77435320	T	G	SNP	TRPM6	ENST00000451710	human	ensembl	69_37n	-1	known	missense	c.1034	p.E345A	0.997	NULL	pfam_MHCK_EF2_kinase,pfam_Ion_trans_dom,superfamily_Kinase-like_dom,smart_MHCK_EF2_kinase,pfscan_MHCK_EF2_kinase	-	no_errors	TRPM6	HGNC	ENSG00000119121	75	0	0.00	69	33	32.35	-	-	-
USH2A	0	genome.wustl.edu	37	1	215953193	215953193	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	1	215953193	215953193	G	A	SNP	USH2A	ENST00000366943	human	ensembl	69_37n	-1	known	missense	c.10931	p.T3644M	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_EGF_laminin,pfam_Laminin_G,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_LamG-like,smart_Laminin_N,smart_EGF_laminin,smart_Fibronectin_type3,smart_Laminin_G,pfscan_EGF_laminin,pfscan_Fibronectin_type3,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	USH2A	HGNC	ENSG00000042781	64	0	0.00	25	20	44.44	-	-	-
VDR	0	genome.wustl.edu	37	12	48240182	48240182	+	Silent	SNP	C	C	T			TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	12	48240182	48240182	C	T	SNP	VDR	ENST00000229022	human	ensembl	69_37n	-1	known	silent	c.960	p.L320	0.999	pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Nucl_hrmn_rcpt_lig-bd_core	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_VitD_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt	-	no_errors	VDR	HGNC	ENSG00000111424	13	0	0.00	3	5	62.50	-	-	-
VNN1	0	genome.wustl.edu	37	6	133032939	133032939	+	Missense_Mutation	SNP	C	C	A			TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	6	133032939	133032939	C	A	SNP	VNN1	ENST00000367928	human	ensembl	69_37n	-1	known	missense	c.250	p.G84C	0.989	pfam_C-N_Hydrolase,superfamily_C-N_Hydrolase,pirsf_Biotinidase_euk,pfscan_C-N_Hydrolase	pfam_C-N_Hydrolase,superfamily_C-N_Hydrolase,pirsf_Biotinidase_euk,pfscan_C-N_Hydrolase	-	no_errors	VNN1	HGNC	ENSG00000112299	118	0	0.00	100	12	10.71	-	-	-
VPS13C	0	genome.wustl.edu	37	15	62172909	62172909	+	Missense_Mutation	SNP	G	G	C			TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	15	62172909	62172909	G	C	SNP	VPS13C	ENST00000261517	human	ensembl	69_37n	-1	known	missense	c.9901	p.Q3301E	0.978	NULL	pfam_VPSAP,pfam_Autophagy-rel_C	-	no_errors	VPS13C	HGNC	ENSG00000129003	118	0	0.00	13	19	59.38	-	-	-
VPS18	0	genome.wustl.edu	37	15	41195138	41195138	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	15	41195138	41195138	C	T	SNP	VPS18	ENST00000220509	human	ensembl	69_37n	+1	known	missense	c.2521	p.R841W	1.000	NULL	pfam_Pep3_Vps18,pfam_Clathrin_H-chain/VPS_repeat,superfamily_ARM-type_fold	-	no_errors	VPS18	HGNC	ENSG00000104142	16	0	0.00	11	19	61.29	-	-	-
ZIM3	0	genome.wustl.edu	37	19	57649909	57649909	+	Missense_Mutation	SNP	G	G	C			TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	19	57649909	57649909	G	C	SNP	ZIM3	ENST00000269834	human	ensembl	69_37n	-1	known	missense	c.73	p.L25V	0.003	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZIM3	HGNC	ENSG00000141946	41	0	0.00	12	20	62.50	-	-	-
ZNF300	0	genome.wustl.edu	37	5	150275563	150275564	+	Frame_Shift_Ins	INS	-	-	C			TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	5	150275563	150275564	-	C	INS	ZNF300	ENST00000446148	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1286_1285	p.E429fs	0.885:0.871	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF300	HGNC	ENSG00000145908	56	0	0.00	16	2	11.11	-	-	-
ZNF711	0	genome.wustl.edu	37	X	84526405	84526405	+	Missense_Mutation	SNP	C	C	A			TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	X	84526405	84526405	C	A	SNP	ZNF711	ENST00000395402	human	ensembl	69_37n	+1	known	missense	c.1881	p.H627Q	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Transcrp_activ_Zfx/Zfy-dom,pfam_Znf_C2H2,pfam_Znf_C2H2_jaz,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF711	HGNC	ENSG00000147180	48	0	0.00	14	16	53.33	-	-	-
