Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
AACS	0	genome.wustl.edu	37	12	125576043	125576043	+	Missense_Mutation	SNP	T	T	A			TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	12	125576043	125576043	T	A	SNP	AACS	ENST00000316519	human	ensembl	69_37n	+1	known	missense	c.544	p.S182T	1.000	pfam_AMP-dep_Synth/Lig,tigrfam_Acac_CoA_synth	pfam_AMP-dep_Synth/Lig,pfam_Acyl-CoA_synth_DUF3448,tigrfam_Acac_CoA_synth	-	no_errors	AACS	HGNC	ENSG00000081760	71	0	0.00	91	12	11.65	-	-	-
ACTR1A	0	genome.wustl.edu	37	10	104247996	104247996	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	10	104247996	104247996	C	T	SNP	ACTR1A	ENST00000369905	human	ensembl	69_37n	-1	known	missense	c.226	p.E76K	1.000	pfam_Actin-like,smart_Actin-like,prints_Actin-like	pfam_Actin-like,smart_Actin-like,prints_Actin-like	-	no_errors	ACTR1A	HGNC	ENSG00000138107	85	0	0.00	100	52	34.21	-	-	-
ANKRD30B	0	genome.wustl.edu	37	18	14803817	14803817	+	Missense_Mutation	SNP	T	T	G			TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	18	14803817	14803817	T	G	SNP	ANKRD30B	ENST00000358984	human	ensembl	69_37n	+1	known	missense	c.2278	p.L760V	0.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD30B	HGNC	ENSG00000180777	289	1	0.34	79	19	19.39	-	-	-
ANKRD30BL	0	genome.wustl.edu	37	2	133015302	133015302	+	RNA	SNP	T	T	G			TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	2	133015302	133015302	T	G	SNP	ANKRD30BL	ENST00000470729	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.013	-	-	-	no_errors	ANKRD30BL	HGNC	ENSG00000163046	17	0	0.00	40	10	20.00	-	-	-
ARHGAP17	0	genome.wustl.edu	37	16	24979688	24979688	+	Missense_Mutation	SNP	C	C	G			TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	16	24979688	24979688	C	G	SNP	ARHGAP17	ENST00000289968	human	ensembl	69_37n	-1	known	missense	c.445	p.D149H	1.000	pfam_BAR_dom,smart_BAR_dom,pfscan_BAR_dom	pfam_BAR_dom,pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_BAR_dom,smart_RhoGAP_dom,pfscan_BAR_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP17	HGNC	ENSG00000140750	174	0	0.00	125	28	18.18	-	-	-
ARHGEF1	0	genome.wustl.edu	37	19	42410774	42410774	+	Splice_Site	SNP	T	T	C			TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	19	42410774	42410774	T	C	SNP	ARHGEF1	ENST00000337665	human	ensembl	69_37n	+1	known	splice_site	c.2700+2	e27+2	0.991	-	-	-	no_errors	ARHGEF1	HGNC	ENSG00000076928	18	0	0.00	17	6	25.00	-	-	-
ARL6	0	genome.wustl.edu	37	3	97506865	97506865	+	Missense_Mutation	SNP	C	C	A			TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	3	97506865	97506865	C	A	SNP	ARL6	ENST00000335979	human	ensembl	69_37n	+1	known	missense	c.381	p.F127L	1.000	pfam_Small_GTPase_ARF/SAR,pfam_Small_GTPase,pfam_SRP_receptor_beta_su,pfam_Gprotein_alpha_su,pfam_Gtr1_RagA,pfam_MIRO-like,smart_Small_GTPase_SAR1,smart_Small_GTPase_ARF,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase_ARF/SAR,pfam_Small_GTPase,pfam_SRP_receptor_beta_su,pfam_Gprotein_alpha_su,pfam_Gtr1_RagA,pfam_MIRO-like,smart_Small_GTPase_SAR1,smart_Small_GTPase_ARF,prints_Small_GTPase_ARF/SAR,tigrfam_Small_GTP-bd_dom	-	no_errors	ARL6	HGNC	ENSG00000113966	365	0	0.00	98	19	16.24	-	-	-
ARMC9	0	genome.wustl.edu	37	2	232156119	232156119	+	Silent	SNP	C	C	T			TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	2	232156119	232156119	C	T	SNP	ARMC9	ENST00000349938	human	ensembl	69_37n	+1	known	silent	c.1680	p.I560	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold,smart_LisH_dimerisation,pfscan_LisH_dimerisation	-	no_errors	ARMC9	HGNC	ENSG00000135931	156	0	0.00	81	18	18.18	-	-	-
BMPR2	0	genome.wustl.edu	37	2	203242213	203242213	+	Nonsense_Mutation	SNP	C	C	T			TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	2	203242213	203242213	C	T	SNP	BMPR2	ENST00000374580	human	ensembl	69_37n	+1	known	nonsense	c.16	p.Q6*	0.233	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Activin_rcpt,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	BMPR2	HGNC	ENSG00000204217	49	0	0.00	58	25	30.12	-	-	-
BTN3A1	0	genome.wustl.edu	37	6	26412970	26412970	+	Silent	SNP	A	A	G			TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	6	26412970	26412970	A	G	SNP	BTN3A1	ENST00000476549	human	ensembl	69_37n	+1	known	silent	c.1056	p.K352	0.000	NULL	pfam_Ig_V-set,pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like	-	no_errors	BTN3A1	HGNC	ENSG00000026950	452	0	0.00	211	30	12.45	-	-	-
CARS2	0	genome.wustl.edu	37	13	111319757	111319759	+	In_Frame_Del	DEL	ATG	ATG	-			TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	ATG	ATG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	13	111319757	111319759	ATG	-	DEL	CARS2	ENST00000257347	human	ensembl	69_37n	-1	known	in_frame_del	c.849_847	p.H283in_frame_del	0.835:1.000:1.000	pfam_Cys-tRNA/MSH_ligase,pfam_aa-tRNA-synth_Ia,prints_Cys-tRNA/MSH_ligase,tigrfam_Cys-tRNA-synt	pfam_Cys-tRNA/MSH_ligase,pfam_Methionyl/Leucyl_tRNA_Synth,pfam_aa-tRNA-synth_Ia,superfamily_tRNAsynth_1a_anticodon-bd,prints_Cys-tRNA/MSH_ligase,tigrfam_Cys-tRNA-synt	-	no_errors	CARS2	HGNC	ENSG00000134905	304	0	0.00	91	11	10.58	-	-	-
CCDC144B	0	genome.wustl.edu	37	17	18528551	18528551	+	RNA	SNP	G	G	A			TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	17	18528551	18528551	G	A	SNP	CCDC144B	ENST00000450277	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.059	-	-	-	no_errors	CCDC144B	HGNC	ENSG00000154874	27	0	0.00	33	16	32.65	-	-	-
CEP63	0	genome.wustl.edu	37	3	134268924	134268924	+	Missense_Mutation	SNP	A	A	G			TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	3	134268924	134268924	A	G	SNP	CEP63	ENST00000337090	human	ensembl	69_37n	+1	known	missense	c.1202	p.Q401R	1.000	NULL	NULL	-	no_errors	CEP63	HGNC	ENSG00000182923	302	0	0.00	83	23	21.70	-	-	-
CNGB1	0	genome.wustl.edu	37	16	57965655	57965655	+	Silent	SNP	G	G	T			TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	16	57965655	57965655	G	T	SNP	CNGB1	ENST00000251102	human	ensembl	69_37n	-1	known	silent	c.1500	p.T500	0.998	NULL	pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	-	no_errors	CNGB1	HGNC	ENSG00000070729	140	0	0.00	172	37	17.70	-	-	-
CSPP1	0	genome.wustl.edu	37	8	68024243	68024243	+	Missense_Mutation	SNP	A	A	G			TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	8	68024243	68024243	A	G	SNP	CSPP1	ENST00000262210	human	ensembl	69_37n	+1	known	missense	c.1157	p.E386G	1.000	NULL	NULL	-	no_errors	CSPP1	HGNC	ENSG00000104218	395	0	0.00	203	52	20.39	-	-	-
DDX26B	0	genome.wustl.edu	37	X	134713802	134713802	+	Missense_Mutation	SNP	G	G	C			TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	X	134713802	134713802	G	C	SNP	DDX26B	ENST00000370752	human	ensembl	69_37n	+1	known	missense	c.2098	p.E700Q	0.008	NULL	pfscan_VWF_A	-	no_errors	DDX26B	HGNC	ENSG00000165359	157	0	0.00	76	20	20.83	-	-	-
DHPS	0	genome.wustl.edu	37	19	12788192	12788192	+	Missense_Mutation	SNP	T	T	G			TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	19	12788192	12788192	T	G	SNP	DHPS	ENST00000210060	human	ensembl	69_37n	-1	known	missense	c.697	p.S233R	1.000	pfam_Deoxyhypusine_synthase,tigrfam_Deoxyhypusine_synthase	pfam_Deoxyhypusine_synthase,tigrfam_Deoxyhypusine_synthase	-	no_errors	DHPS	HGNC	ENSG00000095059	50	0	0.00	81	18	18.18	-	-	-
EIF3I	0	genome.wustl.edu	37	1	32694340	32694340	+	Missense_Mutation	SNP	A	A	G			TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	1	32694340	32694340	A	G	SNP	EIF3I	ENST00000373586	human	ensembl	69_37n	+1	known	missense	c.652	p.T218A	1.000	superfamily_WD40_repeat_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	EIF3I	HGNC	ENSG00000084623	95	0	0.00	117	25	17.48	-	-	-
EPHA6	0	genome.wustl.edu	37	3	97356897	97356897	+	Missense_Mutation	SNP	G	G	T			TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	3	97356897	97356897	G	T	SNP	EPHA6	ENST00000389672	human	ensembl	69_37n	+1	known	missense	c.2755	p.D919Y	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_cat_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	EPHA6	HGNC	ENSG00000080224	221	0	0.00	143	18	11.18	-	-	-
GALNT5	0	genome.wustl.edu	37	2	158152231	158152231	+	Missense_Mutation	SNP	C	C	A			TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	2	158152231	158152231	C	A	SNP	GALNT5	ENST00000259056	human	ensembl	69_37n	+1	known	missense	c.1798	p.P600T	1.000	pfam_Glyco_trans_2	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT5	HGNC	ENSG00000136542	730	1	0.14	380	94	19.83	-	-	-
HIVEP3	0	genome.wustl.edu	37	1	41976178	41976178	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	1	41976178	41976178	C	T	SNP	HIVEP3	ENST00000247584	human	ensembl	69_37n	-1	known	missense	c.7165	p.G2389R	0.893	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	HIVEP3	HGNC	ENSG00000127124	24	0	0.00	35	8	18.60	-	-	-
IGSF9B	0	genome.wustl.edu	37	11	133807856	133807856	+	Missense_Mutation	SNP	G	G	T			TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	11	133807856	133807856	G	T	SNP	IGSF9B	ENST00000321016	human	ensembl	69_37n	-1	known	missense	c.410	p.A137D	1.000	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	IGSF9B	HGNC	ENSG00000080854	57	0	0.00	52	12	18.75	-	-	-
ITGA8	0	genome.wustl.edu	37	10	15573048	15573048	+	Splice_Site	SNP	C	C	A			TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	10	15573048	15573048	C	A	SNP	ITGA8	ENST00000378076	human	ensembl	69_37n	-1	known	splice_site	c.2982+1	e28+1	0.996	-	-	-	no_errors	ITGA8	HGNC	ENSG00000077943	277	0	0.00	64	16	20.00	-	-	-
ITGAD	0	genome.wustl.edu	37	16	31425771	31425771	+	Splice_Site	SNP	G	G	C			TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	16	31425771	31425771	G	C	SNP	ITGAD	ENST00000389202	human	ensembl	69_37n	+1	known	splice_site	c.1997-1	e17-1	0.961	-	-	-	no_errors	ITGAD	HGNC	ENSG00000156886	181	0	0.00	130	35	21.21	-	-	-
ITGAX	0	genome.wustl.edu	37	16	31373963	31373963	+	Silent	SNP	G	G	T			TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	16	31373963	31373963	G	T	SNP	ITGAX	ENST00000268296	human	ensembl	69_37n	+1	known	silent	c.1248	p.G416	0.154	smart_Int_alpha_beta-p	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_FG-GAP,pfam_Integrin_alpha_C_CS,smart_Int_alpha_beta-p,smart_VWF_A,prints_Integrin_alpha,pfscan_VWF_A	-	no_errors	ITGAX	HGNC	ENSG00000140678	27	0	0.00	45	19	29.69	-	-	-
KIAA0907	0	genome.wustl.edu	37	1	155903461	155903461	+	Missense_Mutation	SNP	T	T	C			TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	1	155903461	155903461	T	C	SNP	KIAA0907	ENST00000368321	human	ensembl	69_37n	-1	known	missense	c.218	p.K73R	1.000	NULL	NULL	-	no_errors	KIAA0907	HGNC	ENSG00000132680	93	0	0.00	99	11	10.00	-	-	-
LAMB4	0	genome.wustl.edu	37	7	107746436	107746436	+	Missense_Mutation	SNP	C	C	G			TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	7	107746436	107746436	C	G	SNP	LAMB4	ENST00000205386	human	ensembl	69_37n	-1	known	missense	c.696	p.K232N	0.970	pfam_Laminin_N,smart_Laminin_N,pfscan_Laminin_N	pfam_EGF_laminin,pfam_Laminin_N,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,pfscan_Laminin_IV,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	LAMB4	HGNC	ENSG00000091128	221	0	0.00	161	36	18.27	-	-	-
LILRA5	0	genome.wustl.edu	37	19	54822884	54822884	+	Missense_Mutation	SNP	A	A	G			TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	19	54822884	54822884	A	G	SNP	LILRA5	ENST00000301219	human	ensembl	69_37n	-1	known	missense	c.512	p.F171S	0.000	smart_Ig_sub	smart_Ig_sub,smart_Ig_sub2	-	no_errors	LILRA5	HGNC	ENSG00000187116	55	0	0.00	78	13	14.29	-	-	-
LRP2	0	genome.wustl.edu	37	2	170011097	170011097	+	Missense_Mutation	SNP	C	C	G			TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	2	170011097	170011097	C	G	SNP	LRP2	ENST00000263816	human	ensembl	69_37n	-1	known	missense	c.12168	p.L4056F	0.997	superfamily_Growth_fac_rcpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt,superfamily_LDrepeatLR_classA_rpt,superfamily_TIL_dom,smart_LDrepeatLR_classA_rpt,smart_EGF-like,smart_EGF-like_Ca-bd,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP2	HGNC	ENSG00000081479	149	0	0.00	103	30	22.56	-	-	-
LRRIQ1	0	genome.wustl.edu	37	12	85449848	85449848	+	Missense_Mutation	SNP	T	T	A			TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	12	85449848	85449848	T	A	SNP	LRRIQ1	ENST00000393217	human	ensembl	69_37n	+1	known	missense	c.1277	p.L426Q	0.000	NULL	pfam_IQ_motif_EF-hand-BS,smart_IQ_motif_EF-hand-BS,smart_Leu-rich_rpt_typical-subtyp,pfscan_IQ_motif_EF-hand-BS	-	no_errors	LRRIQ1	HGNC	ENSG00000133640	244	0	0.00	31	10	24.39	-	-	-
LRRIQ1	0	genome.wustl.edu	37	12	85449849	85449849	+	Silent	SNP	A	A	G			TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	12	85449849	85449849	A	G	SNP	LRRIQ1	ENST00000393217	human	ensembl	69_37n	+1	known	silent	c.1278	p.L426	0.000	NULL	pfam_IQ_motif_EF-hand-BS,smart_IQ_motif_EF-hand-BS,smart_Leu-rich_rpt_typical-subtyp,pfscan_IQ_motif_EF-hand-BS	-	no_errors	LRRIQ1	HGNC	ENSG00000133640	244	0	0.00	32	10	23.81	-	-	-
MAML2	0	genome.wustl.edu	37	11	95825407	95825407	+	Silent	SNP	C	C	T			TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	11	95825407	95825407	C	T	SNP	MAML2	ENST00000440572	human	ensembl	69_37n	-1	known	silent	c.1788	p.Q596	0.003	NULL	pfam_Neuroggenic_mastermind-like_N	-	no_errors	MAML2	HGNC	ENSG00000184384	69	0	0.00	192	30	13.51	-	-	-
METTL14	0	genome.wustl.edu	37	4	119609080	119609080	+	Missense_Mutation	SNP	G	G	C			TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	4	119609080	119609080	G	C	SNP	METTL14	ENST00000388822	human	ensembl	69_37n	+1	known	missense	c.69	p.L23F	1.000	NULL	pfam_MT-A70-like,pfscan_MT-A70-like	-	no_errors	METTL14	HGNC	ENSG00000145388	297	0	0.00	178	40	18.35	-	-	-
MUC5B	0	genome.wustl.edu	37	11	1264014	1264014	+	Silent	SNP	G	G	C			TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	11	1264014	1264014	G	C	SNP	MUC5B	ENST00000447027	human	ensembl	69_37n	+1	known	silent	c.5913	p.L1971	0.000	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC5B	HGNC	ENSG00000117983	261	0	0.00	599	145	19.49	-	-	-
NECAB1	0	genome.wustl.edu	37	8	91937819	91937819	+	Missense_Mutation	SNP	G	G	T			TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	8	91937819	91937819	G	T	SNP	NECAB1	ENST00000417640	human	ensembl	69_37n	+1	known	missense	c.551	p.S184I	0.997	NULL	pfam_Antibiotic_mOase,superfamily_Dimeric_a/b-barrel,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	NECAB1	HGNC	ENSG00000123119	124	0	0.00	220	29	11.65	-	-	-
NECAP2	0	genome.wustl.edu	37	1	16770220	16770220	+	Missense_Mutation	SNP	G	G	T			TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	1	16770220	16770220	G	T	SNP	NECAP2	ENST00000443980	human	ensembl	69_37n	+1	known	missense	c.186	p.R62S	0.990	pfam_NECAP-1	pfam_NECAP-1	-	no_errors	NECAP2	HGNC	ENSG00000157191	50	0	0.00	62	10	13.89	-	-	-
NEDD9	0	genome.wustl.edu	37	6	11190312	11190312	+	Missense_Mutation	SNP	T	T	A			TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	6	11190312	11190312	T	A	SNP	NEDD9	ENST00000379446	human	ensembl	69_37n	-1	known	missense	c.1790	p.Q597L	0.133	NULL	pfam_CAS_DUF3513,pfam_Serine_rich,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	NEDD9	HGNC	ENSG00000111859	37	0	0.00	63	18	22.22	-	-	-
NUP88	0	genome.wustl.edu	37	17	5289552	5289552	+	Missense_Mutation	SNP	C	C	G			TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	17	5289552	5289552	C	G	SNP	NUP88	ENST00000573584	human	ensembl	69_37n	-1	known	missense	c.2200	p.D734H	1.000	pfam_Nucleoporin_Nup88	pfam_Nucleoporin_Nup88	-	no_errors	NUP88	HGNC	ENSG00000108559	537	0	0.00	270	78	22.41	-	-	-
OR4A5	0	genome.wustl.edu	37	11	51411671	51411671	+	Missense_Mutation	SNP	G	G	C			TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	11	51411671	51411671	G	C	SNP	OR4A5	ENST00000319760	human	ensembl	69_37n	-1	known	missense	c.725	p.T242S	0.001	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR4A5	HGNC	ENSG00000221840	119	0	0.00	66	15	18.52	-	-	-
OR5L2	0	genome.wustl.edu	37	11	55594925	55594925	+	Missense_Mutation	SNP	T	T	G			TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	11	55594925	55594925	T	G	SNP	OR5L2	ENST00000378397	human	ensembl	69_37n	+1	known	missense	c.231	p.I77M	0.044	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR5L2	HGNC	ENSG00000205030	365	0	0.00	383	78	16.92	-	-	-
OXGR1	0	genome.wustl.edu	37	13	97639673	97639673	+	Missense_Mutation	SNP	T	T	C			TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	13	97639673	97639673	T	C	SNP	OXGR1	ENST00000298440	human	ensembl	69_37n	-1	known	missense	c.341	p.H114R	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_P2_purnocptor	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_P2_purnocptor	-	no_errors	OXGR1	HGNC	ENSG00000165621	77	0	0.00	112	33	22.76	-	-	-
PARP8	0	genome.wustl.edu	37	5	50055554	50055554	+	Nonsense_Mutation	SNP	A	A	T			TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	5	50055554	50055554	A	T	SNP	PARP8	ENST00000281631	human	ensembl	69_37n	+1	known	nonsense	c.262	p.R88*	1.000	NULL	pfam_Poly(ADP-ribose)pol_cat_dom,pfscan_Poly(ADP-ribose)pol_cat_dom	-	no_errors	PARP8	HGNC	ENSG00000151883	412	0	0.00	126	16	11.27	-	-	-
PDE2A	0	genome.wustl.edu	37	11	72300269	72300269	+	Missense_Mutation	SNP	C	C	G			TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	11	72300269	72300269	C	G	SNP	PDE2A	ENST00000334456	human	ensembl	69_37n	-1	known	missense	c.889	p.G297R	1.000	pfam_GAF,smart_GAF	pfam_PDEase_catalytic_dom,pfam_GAF,smart_GAF,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE2A	HGNC	ENSG00000186642	43	0	0.00	41	8	16.33	-	-	-
PEAK1	0	genome.wustl.edu	37	15	77406585	77406585	+	Silent	SNP	G	G	A			TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	15	77406585	77406585	G	A	SNP	PEAK1	ENST00000312493	human	ensembl	69_37n	-1	known	silent	c.5154	p.S1718	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	PEAK1	Clone_based_vega_gene	ENSG00000173517	96	0	0.00	130	20	13.33	-	-	-
PEAR1	0	genome.wustl.edu	37	1	156883814	156883814	+	Missense_Mutation	SNP	T	T	A			TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	1	156883814	156883814	T	A	SNP	PEAR1	ENST00000292357	human	ensembl	69_37n	+1	known	missense	c.2884	p.W962R	0.084	NULL	pfam_EGF_laminin,superfamily_Growth_fac_rcpt,smart_EGF-like,smart_EGF_laminin,pfscan_EG-like_dom,pfscan_EMI_domain	-	no_errors	PEAR1	HGNC	ENSG00000187800	19	0	0.00	31	14	31.11	-	-	-
PHKB	0	genome.wustl.edu	37	16	47531346	47531346	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	16	47531346	47531346	C	T	SNP	PHKB	ENST00000299167	human	ensembl	69_37n	+1	known	missense	c.113	p.P38L	0.992	NULL	pfam_Glyco_hydro_15,superfamily_6-hairpin_glycosidase-like	-	no_errors	PHKB	HGNC	ENSG00000102893	403	0	0.00	96	32	25.00	-	-	-
PLEKHS1	0	genome.wustl.edu	37	10	115540387	115540387	+	Missense_Mutation	SNP	C	C	G			TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	10	115540387	115540387	C	G	SNP	PLEKHS1	ENST00000369312	human	ensembl	69_37n	+1	known	missense	c.948	p.I316M	1.000	NULL	NULL	-	no_errors	PLEKHS1	HGNC	ENSG00000148735	218	1	0.46	107	19	15.08	-	-	-
PLS1	0	genome.wustl.edu	37	3	142403210	142403210	+	Silent	SNP	C	C	T			TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	3	142403210	142403210	C	T	SNP	PLS1	ENST00000337777	human	ensembl	69_37n	+1	known	silent	c.861	p.T287	0.905	pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	pfam_CH-domain,pfam_EF-hand,superfamily_CH-domain,smart_EF_hand_Ca-bd,smart_CH-domain,pfscan_CH-domain,pfscan_EF_HAND_2	-	no_errors	PLS1	HGNC	ENSG00000120756	122	0	0.00	112	16	12.50	-	-	-
PRR23B	0	genome.wustl.edu	37	3	138738845	138738845	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	3	138738845	138738845	C	T	SNP	PRR23B	ENST00000329447	human	ensembl	69_37n	-1	known	missense	c.659	p.R220H	0.000	pfam_UPF0572	pfam_UPF0572	-	no_errors	PRR23B	HGNC	ENSG00000184814	49	0	0.00	76	23	23.00	-	-	-
PSMA5	0	genome.wustl.edu	37	1	109952632	109952632	+	Missense_Mutation	SNP	A	A	C			TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	1	109952632	109952632	A	C	SNP	PSMA5	ENST00000271308	human	ensembl	69_37n	-1	known	missense	c.566	p.M189R	1.000	pfam_Proteasome_sua/b	pfam_Proteasome_sua/b,pfam_Proteasome_asu_N,smart_Proteasome_asu_N	-	no_errors	PSMA5	HGNC	ENSG00000143106	434	1	0.23	180	49	21.40	-	-	-
PTGIS	0	genome.wustl.edu	37	20	48124493	48124493	+	Missense_Mutation	SNP	T	T	A			TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	20	48124493	48124493	T	A	SNP	PTGIS	ENST00000244043	human	ensembl	69_37n	-1	known	missense	c.1467	p.E489D	0.056	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_E_grp-I	-	no_errors	PTGIS	HGNC	ENSG00000124212	10	0	0.00	44	12	21.43	-	-	-
PTPN14	0	genome.wustl.edu	37	1	214557148	214557148	+	Missense_Mutation	SNP	G	G	C			TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	1	214557148	214557148	G	C	SNP	PTPN14	ENST00000366956	human	ensembl	69_37n	-1	known	missense	c.2050	p.H684D	0.989	pirsf_Tyr_Pase_non-rcpt_typ-14/21	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_FERM_central,pfam_FERM_N,pfam_FERM_PH-like_C,pfam_Dual-sp_phosphatase_cat-dom,superfamily_FERM_central,smart_Band_41_domain,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Tyr_Pase_non-rcpt_typ-14/21,pfscan_FERM_domain,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt,prints_Band_41_fam	-	no_errors	PTPN14	HGNC	ENSG00000152104	18	0	0.00	62	15	19.48	-	-	-
RIMBP2	0	genome.wustl.edu	37	12	130927134	130927134	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	12	130927134	130927134	G	A	SNP	RIMBP2	ENST00000261655	human	ensembl	69_37n	-1	known	missense	c.712	p.R238W	0.780	superfamily_SH3_domain	pfam_SH3_2,pfam_SH3_domain,superfamily_SH3_domain,superfamily_Fibronectin_type3,smart_SH3_domain,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_SH3_domain,prints_SH3_domain	-	no_errors	RIMBP2	HGNC	ENSG00000060709	66	0	0.00	93	27	22.50	-	-	-
RNA5-8SP6	0	genome.wustl.edu	37	Y	10037843	10037843	+	RNA	SNP	C	C	T			TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	Y	10037843	10037843	C	T	SNP	RNA5-8SP6	ENST00000515896	human	ensembl	69_37n	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RNA5-8SP6	HGNC	ENSG00000251705	32	0	0.00	8	5	38.46	-	-	-
RSPO2	0	genome.wustl.edu	37	8	109001415	109001415	+	Missense_Mutation	SNP	C	C	A			TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	8	109001415	109001415	C	A	SNP	RSPO2	ENST00000276659	human	ensembl	69_37n	-1	known	missense	c.152	p.G51V	1.000	superfamily_Growth_fac_rcpt,smart_Furin_repeat	superfamily_Growth_fac_rcpt,superfamily_Thrombospondin_1_rpt,smart_Furin_repeat,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	-	no_errors	RSPO2	HGNC	ENSG00000147655	130	1	0.76	132	20	13.16	-	-	-
RTN4RL2	0	genome.wustl.edu	37	11	57235332	57235332	+	Silent	SNP	C	C	T			TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	11	57235332	57235332	C	T	SNP	RTN4RL2	ENST00000335099	human	ensembl	69_37n	+1	known	silent	c.282	p.L94	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	RTN4RL2	HGNC	ENSG00000186907	39	0	0.00	128	31	19.50	-	-	-
SELPLG	0	genome.wustl.edu	37	12	109017672	109017674	+	In_Frame_Del	DEL	GCA	GCA	-			TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	GCA	GCA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	12	109017672	109017674	GCA	-	DEL	SELPLG	ENST00000550948	human	ensembl	69_37n	-1	known	in_frame_del	c.412_410	p.VP137in_frame_delA	0.000:0.000:0.000	NULL	NULL	-	no_errors	SELPLG	HGNC	ENSG00000110876	66	0	0.00	213	50	12.20	-	-	-
SIPA1L2	0	genome.wustl.edu	37	1	232650538	232650538	+	Missense_Mutation	SNP	T	T	C			TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	1	232650538	232650538	T	C	SNP	SIPA1L2	ENST00000262861	human	ensembl	69_37n	-1	known	missense	c.548	p.N183S	1.000	NULL	pfam_DUF3401,pfam_Rap_GAP,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ,pfscan_Rap_GAP	-	no_errors	SIPA1L2	HGNC	ENSG00000116991	141	1	0.70	182	31	14.55	-	-	-
SLC45A3	0	genome.wustl.edu	37	1	205628387	205628387	+	Missense_Mutation	SNP	C	C	G			TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	1	205628387	205628387	C	G	SNP	SLC45A3	ENST00000367145	human	ensembl	69_37n	-1	known	missense	c.1637	p.S546T	0.826	NULL	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	-	no_errors	SLC45A3	HGNC	ENSG00000158715	15	0	0.00	36	26	41.94	-	-	-
SPEG	0	genome.wustl.edu	37	2	220333886	220333886	+	Missense_Mutation	SNP	T	T	A			TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	2	220333886	220333886	T	A	SNP	SPEG	ENST00000312358	human	ensembl	69_37n	+1	novel	missense	c.3500	p.L1167Q	1.000	NULL	pfam_Ig_I-set,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	SPEG	HGNC	ENSG00000072195	13	0	0.00	23	12	34.29	-	-	-
SPG20	0	genome.wustl.edu	37	13	36886528	36886528	+	Missense_Mutation	SNP	A	A	G			TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	13	36886528	36886528	A	G	SNP	SPG20	ENST00000355182	human	ensembl	69_37n	-1	known	missense	c.1570	p.S524P	1.000	pfam_Senescence/spartin	pfam_Senescence/spartin,pfam_MIT,smart_MIT	-	no_errors	SPG20	HGNC	ENSG00000133104	416	0	0.00	102	39	27.66	-	-	-
SSPO	0	genome.wustl.edu	37	7	149500337	149500337	+	RNA	SNP	T	T	G			TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	7	149500337	149500337	T	G	SNP	SSPO	ENST00000378016	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.108	-	-	-	no_errors	SSPO	HGNC	ENSG00000197558	22	0	0.00	51	9	15.00	-	-	-
SYT17	0	genome.wustl.edu	37	16	19278387	19278387	+	Nonsense_Mutation	SNP	G	G	T			TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	16	19278387	19278387	G	T	SNP	SYT17	ENST00000355377	human	ensembl	69_37n	+1	known	nonsense	c.1414	p.E472*	1.000	NULL	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting,prints_Synaptotagmin	-	no_errors	SYT17	HGNC	ENSG00000103528	15	0	0.00	43	8	15.69	-	-	-
TMUB2	0	genome.wustl.edu	37	17	42265092	42265092	+	Missense_Mutation	SNP	C	C	G			TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	17	42265092	42265092	C	G	SNP	TMUB2	ENST00000538716	human	ensembl	69_37n	+1	known	missense	c.16	p.L6V	0.999	NULL	pfam_Ubiquitin,smart_Ubiquitin,pfscan_Ubiquitin_supergroup	-	no_errors	TMUB2	HGNC	ENSG00000168591	455	0	0.00	142	59	29.21	-	-	-
TP53	0	genome.wustl.edu	37	17	7578190	7578190	+	Missense_Mutation	SNP	T	T	C			TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	17	7578190	7578190	T	C	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.659	p.Y220C	0.998	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	179	1	0.56	104	52	33.33	-	-	-
TRIM49B	0	genome.wustl.edu	37	11	49053370	49053370	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	11	49053370	49053370	G	A	SNP	TRIM49B	ENST00000332682	human	ensembl	69_37n	+1	known	missense	c.219	p.M73I	0.855	NULL	pfam_SPRY_rcpt,pfam_Znf_B-box,superfamily_ConA-like_lec_gl,smart_Znf_RING,smart_Znf_B-box,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM49B	HGNC	ENSG00000182053	350	0	0.00	157	38	19.49	-	-	-
UAP1	0	genome.wustl.edu	37	1	162557384	162557384	+	Missense_Mutation	SNP	C	C	G			TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	1	162557384	162557384	C	G	SNP	UAP1	ENST00000271469	human	ensembl	69_37n	+1	known	missense	c.954	p.D318E	0.996	pfam_UDPGP_trans	pfam_UDPGP_trans	-	no_errors	UAP1	HGNC	ENSG00000117143	160	0	0.00	130	16	10.96	-	-	-
ZNF169	0	genome.wustl.edu	37	9	97063282	97063282	+	Missense_Mutation	SNP	C	C	A			TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	9	97063282	97063282	C	A	SNP	ZNF169	ENST00000395395	human	ensembl	69_37n	+1	known	missense	c.1442	p.T481K	0.687	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF169	HGNC	ENSG00000175787	70	0	0.00	85	14	14.00	-	-	-
ZNF37A	0	genome.wustl.edu	37	10	38407207	38407207	+	Silent	SNP	A	A	G			TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	10	38407207	38407207	A	G	SNP	ZNF37A	ENST00000351773	human	ensembl	69_37n	+1	known	silent	c.1128	p.T376	0.975	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF37A	HGNC	ENSG00000075407	205	0	0.00	97	28	22.40	-	-	-
