Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
ADCY9	0	genome.wustl.edu	37	16	4042255	4042255	+	Missense_Mutation	SNP	C	C	A			TCGA-AR-A0U3-01A-11D-A10G-09	TCGA-AR-A0U3-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8251555-77d3-4a20-9cc0-f7df0fda5955	264507ec-fd44-4bf0-94aa-abbe52c03810	16	4042255	4042255	C	A	SNP	ADCY9	ENST00000294016	human	ensembl	69_37n	-1	known	missense	c.2099	p.G700V	1.000	NULL	pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY9	HGNC	ENSG00000162104	52	0	0.00	45	27	37.50	-	-	-
ALKBH7	0	genome.wustl.edu	37	19	6374526	6374526	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A0U3-01A-11D-A10G-09	TCGA-AR-A0U3-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8251555-77d3-4a20-9cc0-f7df0fda5955	264507ec-fd44-4bf0-94aa-abbe52c03810	19	6374526	6374526	G	A	SNP	ALKBH7	ENST00000245812	human	ensembl	69_37n	+1	known	missense	c.429	p.M143I	1.000	NULL	NULL	-	no_errors	ALKBH7	HGNC	ENSG00000125652	52	0	0.00	96	21	17.95	-	-	-
BCL9	0	genome.wustl.edu	37	1	147095879	147095879	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A0U3-01A-11D-A10G-09	TCGA-AR-A0U3-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8251555-77d3-4a20-9cc0-f7df0fda5955	264507ec-fd44-4bf0-94aa-abbe52c03810	1	147095879	147095879	C	T	SNP	BCL9	ENST00000234739	human	ensembl	69_37n	+1	known	missense	c.3400	p.R1134W	1.000	NULL	pfam_BCL9_beta-catenin-bd_dom	-	no_errors	BCL9	HGNC	ENSG00000116128	44	0	0.00	36	30	44.78	-	-	-
C17orf104	0	genome.wustl.edu	37	17	42745436	42745436	+	Nonsense_Mutation	SNP	C	C	G			TCGA-AR-A0U3-01A-11D-A10G-09	TCGA-AR-A0U3-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8251555-77d3-4a20-9cc0-f7df0fda5955	264507ec-fd44-4bf0-94aa-abbe52c03810	17	42745436	42745436	C	G	SNP	C17orf104	ENST00000409122	human	ensembl	69_37n	+1	known	nonsense	c.2157	p.Y719*	0.992	NULL	NULL	-	no_errors	C17orf104	HGNC	ENSG00000180336	149	0	0.00	51	84	61.76	-	-	-
CALML6	0	genome.wustl.edu	37	1	1848267	1848267	+	Silent	SNP	C	C	T			TCGA-AR-A0U3-01A-11D-A10G-09	TCGA-AR-A0U3-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8251555-77d3-4a20-9cc0-f7df0fda5955	264507ec-fd44-4bf0-94aa-abbe52c03810	1	1848267	1848267	C	T	SNP	CALML6	ENST00000307786	human	ensembl	69_37n	+1	known	silent	c.330	p.S110	0.213	pfscan_EF_HAND_2	pfam_EF-hand,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	CALML6	HGNC	ENSG00000169885	61	0	0.00	19	28	59.57	-	-	-
DAO	0	genome.wustl.edu	37	12	109288102	109288102	+	Nonsense_Mutation	SNP	C	C	T			TCGA-AR-A0U3-01A-11D-A10G-09	TCGA-AR-A0U3-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8251555-77d3-4a20-9cc0-f7df0fda5955	264507ec-fd44-4bf0-94aa-abbe52c03810	12	109288102	109288102	C	T	SNP	DAO	ENST00000228476	human	ensembl	69_37n	+1	known	nonsense	c.571	p.R191*	1.000	pfam_FAD-dep_OxRdtase	pfam_FAD-dep_OxRdtase	-	no_errors	DAO	HGNC	ENSG00000110887	45	0	0.00	31	22	41.51	-	-	-
DNAH5	0	genome.wustl.edu	37	5	13737575	13737575	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A0U3-01A-11D-A10G-09	TCGA-AR-A0U3-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8251555-77d3-4a20-9cc0-f7df0fda5955	264507ec-fd44-4bf0-94aa-abbe52c03810	5	13737575	13737575	C	T	SNP	DNAH5	ENST00000265104	human	ensembl	69_37n	-1	known	missense	c.11241	p.M3747I	0.999	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH5	HGNC	ENSG00000039139	222	0	0.00	190	88	31.65	-	-	-
DPY19L2P1	0	genome.wustl.edu	37	7	35131356	35131357	+	RNA	DEL	TG	TG	-			TCGA-AR-A0U3-01A-11D-A10G-09	TCGA-AR-A0U3-10A-01D-A10G-09	TG	TG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8251555-77d3-4a20-9cc0-f7df0fda5955	264507ec-fd44-4bf0-94aa-abbe52c03810	7	35131356	35131357	TG	-	DEL	DPY19L2P1	ENST00000436258	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	DPY19L2P1	HGNC	ENSG00000189212	24	0	0.00	47	9	16.07	-	-	-
FCGBP	0	genome.wustl.edu	37	19	40383820	40383820	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A0U3-01A-11D-A10G-09	TCGA-AR-A0U3-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8251555-77d3-4a20-9cc0-f7df0fda5955	264507ec-fd44-4bf0-94aa-abbe52c03810	19	40383820	40383820	C	T	SNP	FCGBP	ENST00000221347	human	ensembl	69_37n	-1	known	missense	c.9790	p.G3264S	0.796	smart_VWC_out,smart_VWF_type-D	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_Fol_N,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EGF-like,smart_VWF_C,smart_VWC_out	-	no_errors	FCGBP	HGNC	ENSG00000090920	19	0	0.00	33	17	34.00	-	-	-
FEZF2	0	genome.wustl.edu	37	3	62356989	62356989	+	Silent	SNP	C	C	A			TCGA-AR-A0U3-01A-11D-A10G-09	TCGA-AR-A0U3-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8251555-77d3-4a20-9cc0-f7df0fda5955	264507ec-fd44-4bf0-94aa-abbe52c03810	3	62356989	62356989	C	A	SNP	FEZF2	ENST00000283268	human	ensembl	69_37n	-1	known	silent	c.1023	p.A341	0.989	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	FEZF2	HGNC	ENSG00000153266	103	0	0.00	75	46	37.70	-	-	-
IQUB	0	genome.wustl.edu	37	7	123150002	123150003	+	Frame_Shift_Ins	INS	-	-	A			TCGA-AR-A0U3-01A-11D-A10G-09	TCGA-AR-A0U3-10A-01D-A10G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8251555-77d3-4a20-9cc0-f7df0fda5955	264507ec-fd44-4bf0-94aa-abbe52c03810	7	123150002	123150003	-	A	INS	IQUB	ENST00000324698	human	ensembl	69_37n	-1	known	frame_shift_ins	c.485_484	p.S162fs	0.996:0.998	pfam_Ubiquitin,pfscan_Ubiquitin_supergroup	pfam_Ubiquitin,pfscan_Ubiquitin_supergroup	-	no_errors	IQUB	HGNC	ENSG00000164675	137	0	0.00	107	60	35.93	-	-	-
KIF2C	0	genome.wustl.edu	37	1	45213334	45213334	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A0U3-01A-11D-A10G-09	TCGA-AR-A0U3-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8251555-77d3-4a20-9cc0-f7df0fda5955	264507ec-fd44-4bf0-94aa-abbe52c03810	1	45213334	45213334	G	A	SNP	KIF2C	ENST00000372224	human	ensembl	69_37n	+1	known	missense	c.278	p.R93Q	1.000	NULL	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF2C	HGNC	ENSG00000142945	120	0	0.00	37	52	58.43	-	-	-
KLF17	0	genome.wustl.edu	37	1	44595388	44595388	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A0U3-01A-11D-A10G-09	TCGA-AR-A0U3-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8251555-77d3-4a20-9cc0-f7df0fda5955	264507ec-fd44-4bf0-94aa-abbe52c03810	1	44595388	44595388	G	A	SNP	KLF17	ENST00000372299	human	ensembl	69_37n	+1	known	missense	c.445	p.G149R	0.004	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	KLF17	HGNC	ENSG00000171872	60	0	0.00	19	7	26.92	-	-	-
MAPKBP1	0	genome.wustl.edu	37	15	42104263	42104263	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A0U3-01A-11D-A10G-09	TCGA-AR-A0U3-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8251555-77d3-4a20-9cc0-f7df0fda5955	264507ec-fd44-4bf0-94aa-abbe52c03810	15	42104263	42104263	G	A	SNP	MAPKBP1	ENST00000456763	human	ensembl	69_37n	+1	known	missense	c.436	p.A146T	0.953	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	MAPKBP1	HGNC	ENSG00000137802	71	0	0.00	43	31	41.33	-	-	-
MGAM	0	genome.wustl.edu	37	7	141765159	141765159	+	Silent	SNP	G	G	A			TCGA-AR-A0U3-01A-11D-A10G-09	TCGA-AR-A0U3-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8251555-77d3-4a20-9cc0-f7df0fda5955	264507ec-fd44-4bf0-94aa-abbe52c03810	7	141765159	141765159	G	A	SNP	MGAM	ENST00000549489	human	ensembl	69_37n	+1	known	silent	c.4509	p.Q1503	1.000	pfam_Glyco_hydro_31,superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_31,pfam_P_trefoil,superfamily_Glycoside_hydrolase_SF,superfamily_Glyco_hydro-type_carb-bd,smart_P_trefoil	-	no_errors	MGAM	HGNC	ENSG00000257335	58	0	0.00	84	12	12.50	-	-	-
NMT1	0	genome.wustl.edu	37	17	43183002	43183002	+	Nonsense_Mutation	SNP	C	C	T			TCGA-AR-A0U3-01A-11D-A10G-09	TCGA-AR-A0U3-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8251555-77d3-4a20-9cc0-f7df0fda5955	264507ec-fd44-4bf0-94aa-abbe52c03810	17	43183002	43183002	C	T	SNP	NMT1	ENST00000258960	human	ensembl	69_37n	+1	known	nonsense	c.1486	p.Q496*	1.000	pirsf_MyristoylCoA_TrFase	pfam_MyristoylCoA_TrFase_C,pfam_MyristoylCoA_TrFase_N,superfamily_Acyl_CoA_acyltransferase,pirsf_MyristoylCoA_TrFase	-	no_errors	NMT1	HGNC	ENSG00000136448	102	0	0.00	31	48	60.76	-	-	-
NPAP1	0	genome.wustl.edu	37	15	24923646	24923646	+	Frame_Shift_Del	DEL	C	C	-			TCGA-AR-A0U3-01A-11D-A10G-09	TCGA-AR-A0U3-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8251555-77d3-4a20-9cc0-f7df0fda5955	264507ec-fd44-4bf0-94aa-abbe52c03810	15	24923646	24923646	C	-	DEL	NPAP1	ENST00000329468	human	ensembl	69_37n	+1	known	frame_shift_del	c.2632	p.Q878fs	0.001	NULL	NULL	-	no_errors	NPAP1	HGNC	ENSG00000185823	108	0	0.00	82	39	30.47	-	-	-
OR6C76	0	genome.wustl.edu	37	12	55820959	55820959	+	Frame_Shift_Del	DEL	A	A	-			TCGA-AR-A0U3-01A-11D-A10G-09	TCGA-AR-A0U3-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8251555-77d3-4a20-9cc0-f7df0fda5955	264507ec-fd44-4bf0-94aa-abbe52c03810	12	55820959	55820959	A	-	DEL	OR6C76	ENST00000328314	human	ensembl	69_37n	+1	known	frame_shift_del	c.922	p.K311fs	0.016	NULL	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR6C76	HGNC	ENSG00000185821	34	0	0.00	25	5	16.67	-	-	-
PABPC4L	0	genome.wustl.edu	37	4	135121651	135121651	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A0U3-01A-11D-A10G-09	TCGA-AR-A0U3-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8251555-77d3-4a20-9cc0-f7df0fda5955	264507ec-fd44-4bf0-94aa-abbe52c03810	4	135121651	135121651	C	T	SNP	PABPC4L	ENST00000529122	human	ensembl	69_37n	-1	known	missense	c.698	p.R233Q	1.000	tigrfam_PABP_1234	pfam_RRM_dom,smart_RRM_dom,smart_RRM_dom_euk,pfscan_RRM_dom,tigrfam_PABP_1234	-	no_errors	PABPC4L	HGNC	ENSG00000254535	223	0	0.00	97	18	15.65	-	-	-
PCDHGB6	0	genome.wustl.edu	37	5	140788351	140788351	+	Missense_Mutation	SNP	A	A	T			TCGA-AR-A0U3-01A-11D-A10G-09	TCGA-AR-A0U3-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8251555-77d3-4a20-9cc0-f7df0fda5955	264507ec-fd44-4bf0-94aa-abbe52c03810	5	140788351	140788351	A	T	SNP	PCDHGB6	ENST00000520790	human	ensembl	69_37n	+1	known	missense	c.582	p.L194F	0.046	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGB6	HGNC	ENSG00000253305	87	0	0.00	58	33	36.26	-	-	-
PKD1L2	0	genome.wustl.edu	37	16	81242149	81242150	+	Frame_Shift_Del	DEL	TT	TT	-			TCGA-AR-A0U3-01A-11D-A10G-09	TCGA-AR-A0U3-10A-01D-A10G-09	TT	TT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8251555-77d3-4a20-9cc0-f7df0fda5955	264507ec-fd44-4bf0-94aa-abbe52c03810	16	81242149	81242150	TT	-	DEL	PKD1L2	ENST00000337114	human	ensembl	69_37n	-1	known	frame_shift_del	c.707_706	p.N236fs	0.998:0.999	pfam_Lectin_gal-bd_dom,pfscan_Lectin_gal-bd_dom	pfam_Lectin_gal-bd_dom,pfam_C-type_lectin,pfam_PKD/REJ-like,superfamily_C-type_lectin_fold,superfamily_Coatomer/clathrin_app_Ig-like,superfamily_PKD_dom,smart_C-type_lectin,pfscan_C-type_lectin,pfscan_Lectin_gal-bd_dom,pfscan_REJ-like	-	no_errors	PKD1L2	HGNC	ENSG00000166473	40	0	0.00	32	4	11.11	-	-	-
PLD5	0	genome.wustl.edu	37	1	242253180	242253180	+	Silent	SNP	G	G	A			TCGA-AR-A0U3-01A-11D-A10G-09	TCGA-AR-A0U3-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8251555-77d3-4a20-9cc0-f7df0fda5955	264507ec-fd44-4bf0-94aa-abbe52c03810	1	242253180	242253180	G	A	SNP	PLD5	ENST00000536534	human	ensembl	69_37n	-1	known	silent	c.1587	p.G529	0.000	NULL	smart_PLipase_D/transphosphatidylase	-	no_errors	PLD5	HGNC	ENSG00000180287	287	0	0.00	312	117	27.27	-	-	-
PVRL3	0	genome.wustl.edu	37	3	110837787	110837787	+	Missense_Mutation	SNP	T	T	G			TCGA-AR-A0U3-01A-11D-A10G-09	TCGA-AR-A0U3-10A-01D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8251555-77d3-4a20-9cc0-f7df0fda5955	264507ec-fd44-4bf0-94aa-abbe52c03810	3	110837787	110837787	T	G	SNP	PVRL3	ENST00000485303	human	ensembl	69_37n	+1	known	missense	c.787	p.L263V	0.998	NULL	pfam_CD80_C2-set,pfam_Ig_V-set,pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like	-	no_errors	PVRL3	HGNC	ENSG00000177707	67	0	0.00	46	33	41.77	-	-	-
RFX4	0	genome.wustl.edu	37	12	107078653	107078653	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A0U3-01A-11D-A10G-09	TCGA-AR-A0U3-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8251555-77d3-4a20-9cc0-f7df0fda5955	264507ec-fd44-4bf0-94aa-abbe52c03810	12	107078653	107078653	C	T	SNP	RFX4	ENST00000229387	human	ensembl	69_37n	+1	known	missense	c.62	p.S21L	0.003	NULL	NULL	-	no_errors	RFX4	HGNC	ENSG00000111783	94	0	0.00	59	28	32.18	-	-	-
RFXANK	0	genome.wustl.edu	37	19	19304795	19304795	+	Nonsense_Mutation	SNP	C	C	T			TCGA-AR-A0U3-01A-11D-A10G-09	TCGA-AR-A0U3-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8251555-77d3-4a20-9cc0-f7df0fda5955	264507ec-fd44-4bf0-94aa-abbe52c03810	19	19304795	19304795	C	T	SNP	RFXANK	ENST00000303088	human	ensembl	69_37n	+1	known	nonsense	c.40	p.Q14*	0.635	pirsf_DNA-bd_RFXANK	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pirsf_DNA-bd_RFXANK,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	RFXANK	HGNC	ENSG00000064490	88	0	0.00	63	32	33.68	-	-	-
RGPD3	0	genome.wustl.edu	37	2	107040513	107040516	+	Frame_Shift_Del	DEL	TAGA	TAGA	-			TCGA-AR-A0U3-01A-11D-A10G-09	TCGA-AR-A0U3-10A-01D-A10G-09	TAGA	TAGA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8251555-77d3-4a20-9cc0-f7df0fda5955	264507ec-fd44-4bf0-94aa-abbe52c03810	2	107040513	107040516	TAGA	-	DEL	RGPD3	ENST00000304514	human	ensembl	69_37n	-1	known	frame_shift_del	c.3910_3907	p.K1304fs	1.000:0.998:1.000:1.000	NULL	pfam_Ran_bind_dom,pfam_GRIP,pfam_TPR-1,pfam_TPR_2,smart_TPR_repeat,smart_Ran_bind_dom,smart_GRIP,pfscan_GRIP,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Ran_bind_dom	-	no_errors	RGPD3	HGNC	ENSG00000153165	170	0	0.00	142	45	24.06	-	-	-
RGS5	0	genome.wustl.edu	37	1	163117185	163117185	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A0U3-01A-11D-A10G-09	TCGA-AR-A0U3-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8251555-77d3-4a20-9cc0-f7df0fda5955	264507ec-fd44-4bf0-94aa-abbe52c03810	1	163117185	163117185	C	T	SNP	RGS5	ENST00000313961	human	ensembl	69_37n	-1	known	missense	c.493	p.D165N	1.000	pfam_Regulat_G_prot_signal,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal,pfscan_Regulat_G_prot_signal,prints_Regulat_G_prot_signal	pfam_Regulat_G_prot_signal,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal,pfscan_Regulat_G_prot_signal,prints_Regulat_G_prot_signal	-	no_errors	RGS5	HGNC	ENSG00000143248	133	0	0.00	112	53	32.12	-	-	-
SLX4	0	genome.wustl.edu	37	16	3640194	3640194	+	Missense_Mutation	SNP	C	C	A			TCGA-AR-A0U3-01A-11D-A10G-09	TCGA-AR-A0U3-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8251555-77d3-4a20-9cc0-f7df0fda5955	264507ec-fd44-4bf0-94aa-abbe52c03810	16	3640194	3640194	C	A	SNP	SLX4	ENST00000294008	human	ensembl	69_37n	-1	known	missense	c.3445	p.D1149Y	0.000	NULL	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	-	no_errors	SLX4	HGNC	ENSG00000188827	119	0	0.00	97	60	37.97	-	-	-
SMCHD1	0	genome.wustl.edu	37	18	2743899	2743899	+	Silent	SNP	C	C	T			TCGA-AR-A0U3-01A-11D-A10G-09	TCGA-AR-A0U3-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8251555-77d3-4a20-9cc0-f7df0fda5955	264507ec-fd44-4bf0-94aa-abbe52c03810	18	2743899	2743899	C	T	SNP	SMCHD1	ENST00000320876	human	ensembl	69_37n	+1	known	silent	c.3774	p.L1258	0.575	NULL	pfam_SMC_hinge,superfamily_SMC_hinge,superfamily_ATPase-like_ATP-bd,smart_SMC_hinge	-	no_errors	SMCHD1	HGNC	ENSG00000101596	160	0	0.00	138	85	38.12	-	-	-
TEK	0	genome.wustl.edu	37	9	27169494	27169494	+	Silent	SNP	G	G	A			TCGA-AR-A0U3-01A-11D-A10G-09	TCGA-AR-A0U3-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8251555-77d3-4a20-9cc0-f7df0fda5955	264507ec-fd44-4bf0-94aa-abbe52c03810	9	27169494	27169494	G	A	SNP	TEK	ENST00000380036	human	ensembl	69_37n	+1	known	silent	c.495	p.V165	1.000	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Tyr_kin_Tie2_Ig-like_dom-1_N,pfam_Prot_kinase_cat_dom,pfam_Fibronectin_type3,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_EGF-like,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_EG-like_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	TEK	HGNC	ENSG00000120156	76	0	0.00	13	22	62.86	-	-	-
TMEM9B	0	genome.wustl.edu	37	11	8969901	8969901	+	Missense_Mutation	SNP	T	T	A			TCGA-AR-A0U3-01A-11D-A10G-09	TCGA-AR-A0U3-10A-01D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8251555-77d3-4a20-9cc0-f7df0fda5955	264507ec-fd44-4bf0-94aa-abbe52c03810	11	8969901	8969901	T	A	SNP	TMEM9B	ENST00000534025	human	ensembl	69_37n	-1	known	missense	c.563	p.K188M	1.000	pfam_TMEM9	pfam_TMEM9	-	no_errors	TMEM9B	HGNC	ENSG00000175348	48	0	0.00	49	31	38.27	-	-	-
TP53	0	genome.wustl.edu	37	17	7578429	7578429	+	Frame_Shift_Del	DEL	C	C	-			TCGA-AR-A0U3-01A-11D-A10G-09	TCGA-AR-A0U3-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8251555-77d3-4a20-9cc0-f7df0fda5955	264507ec-fd44-4bf0-94aa-abbe52c03810	17	7578429	7578429	C	-	DEL	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	frame_shift_del	c.501	p.Q167fs	0.986	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	64	0	0.00	9	29	72.50	-	-	-
UHRF1BP1L	0	genome.wustl.edu	37	12	100482727	100482727	+	Silent	SNP	T	T	C			TCGA-AR-A0U3-01A-11D-A10G-09	TCGA-AR-A0U3-10A-01D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8251555-77d3-4a20-9cc0-f7df0fda5955	264507ec-fd44-4bf0-94aa-abbe52c03810	12	100482727	100482727	T	C	SNP	UHRF1BP1L	ENST00000279907	human	ensembl	69_37n	-1	known	silent	c.987	p.L329	1.000	NULL	NULL	-	no_errors	UHRF1BP1L	HGNC	ENSG00000111647	120	0	0.00	92	75	44.91	-	-	-
UNC45A	0	genome.wustl.edu	37	15	91496180	91496180	+	Missense_Mutation	SNP	G	G	T			TCGA-AR-A0U3-01A-11D-A10G-09	TCGA-AR-A0U3-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8251555-77d3-4a20-9cc0-f7df0fda5955	264507ec-fd44-4bf0-94aa-abbe52c03810	15	91496180	91496180	G	T	SNP	UNC45A	ENST00000418476	human	ensembl	69_37n	+1	known	missense	c.2325	p.K775N	1.000	superfamily_ARM-type_fold	pfam_UNC-45/Ring3,superfamily_ARM-type_fold,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	UNC45A	HGNC	ENSG00000140553	24	0	0.00	20	13	39.39	-	-	-
VPS53	0	genome.wustl.edu	37	17	489514	489514	+	Missense_Mutation	SNP	C	C	A			TCGA-AR-A0U3-01A-11D-A10G-09	TCGA-AR-A0U3-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8251555-77d3-4a20-9cc0-f7df0fda5955	264507ec-fd44-4bf0-94aa-abbe52c03810	17	489514	489514	C	A	SNP	VPS53	ENST00000437048	human	ensembl	69_37n	-1	known	missense	c.1309	p.D437Y	1.000	pfam_Vps53_N	pfam_Vps53_N,pfam_Vacuolar_sorting-assoc_54	-	no_errors	VPS53	HGNC	ENSG00000141252	138	0	0.00	36	70	66.04	-	-	-
WSB2	0	genome.wustl.edu	37	12	118472017	118472017	+	Missense_Mutation	SNP	G	G	T			TCGA-AR-A0U3-01A-11D-A10G-09	TCGA-AR-A0U3-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8251555-77d3-4a20-9cc0-f7df0fda5955	264507ec-fd44-4bf0-94aa-abbe52c03810	12	118472017	118472017	G	T	SNP	WSB2	ENST00000315436	human	ensembl	69_37n	-1	known	missense	c.1199	p.T400K	1.000	pfam_SOCS_C,smart_SOCS_C,pfscan_SOCS_C	pfam_WD40_repeat,pfam_SOCS_C,superfamily_WD40_repeat_dom,smart_WD40_repeat,smart_SOCS_C,prints_G-protein_beta_WD-40_rep,pfscan_SOCS_C,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WSB2	HGNC	ENSG00000176871	154	0	0.00	135	58	30.05	-	-	-
ZNF729	0	genome.wustl.edu	37	19	22496524	22496524	+	Missense_Mutation	SNP	A	A	G			TCGA-AR-A0U3-01A-11D-A10G-09	TCGA-AR-A0U3-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c8251555-77d3-4a20-9cc0-f7df0fda5955	264507ec-fd44-4bf0-94aa-abbe52c03810	19	22496524	22496524	A	G	SNP	ZNF729	ENST00000357491	human	ensembl	69_37n	+1	known	missense	c.305	p.D102G	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_stop_codon	ZNF729	HGNC	ENSG00000196350	116	0	0.00	92	73	44.24	-	-	-
