Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
ANKRD52	0	genome.wustl.edu	37	12	56638218	56638218	+	Missense_Mutation	SNP	T	T	A			TCGA-AR-A254-01A-21D-A167-09	TCGA-AR-A254-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe2bdac0-832e-4268-bd8f-5dcfffda1979	d139e454-63f2-42da-8ab5-997fca0482b8	12	56638218	56638218	T	A	SNP	ANKRD52	ENST00000267116	human	ensembl	69_37n	-1	known	missense	c.2724	p.E908D	1.000	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD52	HGNC	ENSG00000139645	34	0	0.00	20	4	16.67	-	-	-
ASB10	0	genome.wustl.edu	37	7	150884267	150884268	+	Frame_Shift_Del	DEL	AG	AG	-			TCGA-AR-A254-01A-21D-A167-09	TCGA-AR-A254-10A-01D-A167-09	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe2bdac0-832e-4268-bd8f-5dcfffda1979	d139e454-63f2-42da-8ab5-997fca0482b8	7	150884267	150884268	AG	-	DEL	ASB10	ENST00000422024	human	ensembl	69_37n	-1	known	frame_shift_del	c.86_85	p.L29fs	0.003:0.000	NULL	pfam_Ankyrin_rpt,pfam_SOCS_C,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_SOCS_C,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SOCS_C	-	no_errors	ASB10	HGNC	ENSG00000146926	13	0	0.00	16	3	15.79	-	-	-
CARD8	0	genome.wustl.edu	37	19	48737790	48737790	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A254-01A-21D-A167-09	TCGA-AR-A254-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe2bdac0-832e-4268-bd8f-5dcfffda1979	d139e454-63f2-42da-8ab5-997fca0482b8	19	48737790	48737790	C	T	SNP	CARD8	ENST00000391898	human	ensembl	69_37n	-1	known	missense	c.220	p.E74K	0.000	NULL	pfam_CARD,superfamily_DEATH-like,pfscan_CARD	-	no_errors	CARD8	HGNC	ENSG00000105483	33	0	0.00	28	4	12.50	-	-	-
CDC6	0	genome.wustl.edu	37	17	38450220	38450220	+	Silent	SNP	G	G	A			TCGA-AR-A254-01A-21D-A167-09	TCGA-AR-A254-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe2bdac0-832e-4268-bd8f-5dcfffda1979	d139e454-63f2-42da-8ab5-997fca0482b8	17	38450220	38450220	G	A	SNP	CDC6	ENST00000209728	human	ensembl	69_37n	+1	known	silent	c.855	p.E285	1.000	pfam_ATPase_AAA_core,smart_AAA+_ATPase,pirsf_Cell_div_Cdc6	pfam_ATPase_AAA_core,pfam_Cdc6_C_dom,smart_AAA+_ATPase,pirsf_Cell_div_Cdc6	-	no_errors	CDC6	HGNC	ENSG00000094804	84	0	0.00	618	97	13.57	-	-	-
CNTNAP2	0	genome.wustl.edu	37	7	147600694	147600694	+	Silent	SNP	C	C	T			TCGA-AR-A254-01A-21D-A167-09	TCGA-AR-A254-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe2bdac0-832e-4268-bd8f-5dcfffda1979	d139e454-63f2-42da-8ab5-997fca0482b8	7	147600694	147600694	C	T	SNP	CNTNAP2	ENST00000361727	human	ensembl	69_37n	+1	known	silent	c.2136	p.N712	0.792	NULL	pfam_Laminin_G,pfam_Coagulation_fac_5/8-C_type_dom,pfam_EGF-like_dom,superfamily_Galactose-bd-like,superfamily_ConA-like_lec_gl,superfamily_Fibrinogen_a/b/g_C,smart_Coagulation_fac_5/8-C_type_dom,smart_Laminin_G,smart_EGF-like,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Laminin_G	-	no_errors	CNTNAP2	HGNC	ENSG00000174469	25	0	0.00	20	7	25.93	-	-	-
CTTNBP2	0	genome.wustl.edu	37	7	117431492	117431492	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A254-01A-21D-A167-09	TCGA-AR-A254-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe2bdac0-832e-4268-bd8f-5dcfffda1979	d139e454-63f2-42da-8ab5-997fca0482b8	7	117431492	117431492	C	T	SNP	CTTNBP2	ENST00000446636	human	ensembl	69_37n	-1	novel	missense	c.343	p.D115N	0.893	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	CTTNBP2	HGNC	ENSG00000077063	72	0	0.00	41	10	19.61	-	-	-
DLX6	0	genome.wustl.edu	37	7	96635680	96635680	+	Missense_Mutation	SNP	T	T	A			TCGA-AR-A254-01A-21D-A167-09	TCGA-AR-A254-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe2bdac0-832e-4268-bd8f-5dcfffda1979	d139e454-63f2-42da-8ab5-997fca0482b8	7	96635680	96635680	T	A	SNP	DLX6	ENST00000518156	human	ensembl	69_37n	+1	known	missense	c.391	p.Y131N	1.000	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,prints_HTH_motif,prints_Homeobox_metazoa,pfscan_Homeodomain	-	no_errors	DLX6	HGNC	ENSG00000006377	25	0	0.00	12	5	29.41	-	-	-
DNAH5	0	genome.wustl.edu	37	5	13901632	13901632	+	Missense_Mutation	SNP	T	T	A			TCGA-AR-A254-01A-21D-A167-09	TCGA-AR-A254-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe2bdac0-832e-4268-bd8f-5dcfffda1979	d139e454-63f2-42da-8ab5-997fca0482b8	5	13901632	13901632	T	A	SNP	DNAH5	ENST00000265104	human	ensembl	69_37n	-1	known	missense	c.1781	p.E594V	1.000	pfam_Dynein_heavy_dom-1	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH5	HGNC	ENSG00000039139	44	0	0.00	24	13	35.14	-	-	-
FAM171A1	0	genome.wustl.edu	37	10	15255282	15255282	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A254-01A-21D-A167-09	TCGA-AR-A254-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe2bdac0-832e-4268-bd8f-5dcfffda1979	d139e454-63f2-42da-8ab5-997fca0482b8	10	15255282	15255282	C	T	SNP	FAM171A1	ENST00000378116	human	ensembl	69_37n	-1	known	missense	c.2305	p.V769I	0.819	pfam_Uncharacterised_FAM171	pfam_Uncharacterised_FAM171	-	no_errors	FAM171A1	HGNC	ENSG00000148468	16	0	0.00	9	8	47.06	-	-	-
FNDC1	0	genome.wustl.edu	37	6	159621606	159621606	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A254-01A-21D-A167-09	TCGA-AR-A254-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe2bdac0-832e-4268-bd8f-5dcfffda1979	d139e454-63f2-42da-8ab5-997fca0482b8	6	159621606	159621606	C	T	SNP	FNDC1	ENST00000329629	human	ensembl	69_37n	+1	novel	missense	c.328	p.R110C	0.998	NULL	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	FNDC1	HGNC	ENSG00000164694	58	0	0.00	34	9	20.93	-	-	-
HLA-DRB1	0	genome.wustl.edu	37	6	32549481	32549481	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A254-01A-21D-A167-09	TCGA-AR-A254-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe2bdac0-832e-4268-bd8f-5dcfffda1979	d139e454-63f2-42da-8ab5-997fca0482b8	6	32549481	32549481	C	T	SNP	HLA-DRB1	ENST00000360004	human	ensembl	69_37n	-1	known	missense	c.505	p.A169T	0.016	pfam_Ig_C1-set,smart_Ig_C1-set,pfscan_Ig-like	pfam_MHC_II_b_N,pfam_Ig_C1-set,superfamily_MHC_I/II-like_Ag-recog,smart_MHC_II_b_N,smart_Ig_C1-set,pfscan_Ig-like	-	no_errors	HLA-DRB1	HGNC	ENSG00000196126	39	0	0.00	22	3	12.00	-	-	-
KIAA1429	0	genome.wustl.edu	37	8	95500985	95500985	+	Missense_Mutation	SNP	A	A	C			TCGA-AR-A254-01A-21D-A167-09	TCGA-AR-A254-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe2bdac0-832e-4268-bd8f-5dcfffda1979	d139e454-63f2-42da-8ab5-997fca0482b8	8	95500985	95500985	A	C	SNP	KIAA1429	ENST00000297591	human	ensembl	69_37n	-1	known	missense	c.5388	p.F1796L	1.000	NULL	superfamily_ARM-type_fold	-	no_errors	KIAA1429	HGNC	ENSG00000164944	107	0	0.00	120	26	17.81	-	-	-
MYH14	0	genome.wustl.edu	37	19	50764750	50764750	+	Missense_Mutation	SNP	G	G	T			TCGA-AR-A254-01A-21D-A167-09	TCGA-AR-A254-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe2bdac0-832e-4268-bd8f-5dcfffda1979	d139e454-63f2-42da-8ab5-997fca0482b8	19	50764750	50764750	G	T	SNP	MYH14	ENST00000262269	human	ensembl	69_37n	+1	known	missense	c.2443	p.D815Y	1.000	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,superfamily_Prefoldin,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH14	HGNC	ENSG00000105357	11	0	0.00	5	5	50.00	-	-	-
NOTCH1	0	genome.wustl.edu	37	9	139390870	139390870	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A254-01A-21D-A167-09	TCGA-AR-A254-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe2bdac0-832e-4268-bd8f-5dcfffda1979	d139e454-63f2-42da-8ab5-997fca0482b8	9	139390870	139390870	C	T	SNP	NOTCH1	ENST00000277541	human	ensembl	69_37n	-1	known	missense	c.7321	p.A2441T	1.000	pirsf_Notch	pirsf_Notch,pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,pfam_Ankyrin_rpt,pfam_EGF_extracell,pfam_Notch_NOD_dom,pfam_DUF3454_notch,pfam_Notch_NODP_dom,superfamily_Ankyrin_rpt-contain_dom,superfamily_Notch_dom,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Notch_dom,smart_Ankyrin_rpt,prints_Notch_1,prints_Notch_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_EG-like_dom,pfscan_Notch_dom	-	no_errors	NOTCH1	HGNC	ENSG00000148400	47	0	0.00	26	5	16.13	-	-	-
PCDHB15	0	genome.wustl.edu	37	5	140626710	140626710	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A254-01A-21D-A167-09	TCGA-AR-A254-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe2bdac0-832e-4268-bd8f-5dcfffda1979	d139e454-63f2-42da-8ab5-997fca0482b8	5	140626710	140626710	G	A	SNP	PCDHB15	ENST00000231173	human	ensembl	69_37n	+1	known	missense	c.1564	p.E522K	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB15	HGNC	ENSG00000113248	38	0	0.00	21	6	22.22	-	-	-
PLCH1	0	genome.wustl.edu	37	3	155241748	155241748	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A254-01A-21D-A167-09	TCGA-AR-A254-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe2bdac0-832e-4268-bd8f-5dcfffda1979	d139e454-63f2-42da-8ab5-997fca0482b8	3	155241748	155241748	C	T	SNP	PLCH1	ENST00000340059	human	ensembl	69_37n	-1	known	missense	c.1372	p.E458K	1.000	superfamily_PLC-like_Pdiesterase_TIM-brl	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_C2_Ca-dep,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Pleckstrin_homology,smart_EF_hand_Ca-bd,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_Ca-dep,pfscan_EF_HAND_2,pfscan_C2_membr_targeting,pfscan_Pleckstrin_homology,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C	-	no_errors	PLCH1	HGNC	ENSG00000114805	79	0	0.00	59	13	18.06	-	-	-
RASAL3	0	genome.wustl.edu	37	19	15565071	15565071	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A254-01A-21D-A167-09	TCGA-AR-A254-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe2bdac0-832e-4268-bd8f-5dcfffda1979	d139e454-63f2-42da-8ab5-997fca0482b8	19	15565071	15565071	C	T	SNP	RASAL3	ENST00000343625	human	ensembl	69_37n	-1	known	missense	c.2168	p.R723Q	0.034	superfamily_Rho_GTPase_activation_prot,smart_RasGAP	pfam_RasGAP,superfamily_Rho_GTPase_activation_prot,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_RasGAP,pfscan_RasGAP	-	no_errors	RASAL3	HGNC	ENSG00000105122	34	0	0.00	23	4	14.81	-	-	-
RTN2	0	genome.wustl.edu	37	19	45997940	45997940	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A254-01A-21D-A167-09	TCGA-AR-A254-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe2bdac0-832e-4268-bd8f-5dcfffda1979	d139e454-63f2-42da-8ab5-997fca0482b8	19	45997940	45997940	G	A	SNP	RTN2	ENST00000245923	human	ensembl	69_37n	-1	known	missense	c.403	p.R135C	0.003	NULL	pfam_Reticulon,pfscan_Reticulon	-	no_errors	RTN2	HGNC	ENSG00000125744	30	0	0.00	23	6	20.69	-	-	-
RUNX1	0	genome.wustl.edu	37	21	36206874	36206874	+	Frame_Shift_Del	DEL	T	T	-			TCGA-AR-A254-01A-21D-A167-09	TCGA-AR-A254-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe2bdac0-832e-4268-bd8f-5dcfffda1979	d139e454-63f2-42da-8ab5-997fca0482b8	21	36206874	36206874	T	-	DEL	RUNX1	ENST00000300305	human	ensembl	69_37n	-1	known	frame_shift_del	c.638	p.Q213fs	1.000	pirsf_TF_Runt-rel_RUNX	pfam_AML1/Runt_N,pfam_RunxI,superfamily_p53-like_TF_DNA-bd,pirsf_TF_Runt-rel_RUNX,pfscan_AML1/Runt_N,prints_AML1_Runt	-	no_errors	RUNX1	HGNC	ENSG00000159216	38	0	0.00	22	11	33.33	-	-	-
SLC29A3	0	genome.wustl.edu	37	10	73111334	73111334	+	Silent	SNP	C	C	A			TCGA-AR-A254-01A-21D-A167-09	TCGA-AR-A254-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe2bdac0-832e-4268-bd8f-5dcfffda1979	d139e454-63f2-42da-8ab5-997fca0482b8	10	73111334	73111334	C	A	SNP	SLC29A3	ENST00000373189	human	ensembl	69_37n	+1	known	silent	c.399	p.I133	0.999	NULL	pfam_Eqnu_transpt,prints_Eqnu_transpt	-	no_errors	SLC29A3	HGNC	ENSG00000198246	41	0	0.00	46	28	37.84	-	-	-
SLC29A3	0	genome.wustl.edu	37	10	73115895	73115895	+	Missense_Mutation	SNP	C	C	A			TCGA-AR-A254-01A-21D-A167-09	TCGA-AR-A254-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe2bdac0-832e-4268-bd8f-5dcfffda1979	d139e454-63f2-42da-8ab5-997fca0482b8	10	73115895	73115895	C	A	SNP	SLC29A3	ENST00000373189	human	ensembl	69_37n	+1	known	missense	c.668	p.S223Y	0.324	pfam_Eqnu_transpt,prints_Eqnu_transpt	pfam_Eqnu_transpt,prints_Eqnu_transpt	-	no_errors	SLC29A3	HGNC	ENSG00000198246	44	0	0.00	67	35	34.31	-	-	-
SPTAN1	0	genome.wustl.edu	37	9	131374449	131374449	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A254-01A-21D-A167-09	TCGA-AR-A254-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe2bdac0-832e-4268-bd8f-5dcfffda1979	d139e454-63f2-42da-8ab5-997fca0482b8	9	131374449	131374449	G	A	SNP	SPTAN1	ENST00000358161	human	ensembl	69_37n	+1	known	missense	c.4967	p.S1656N	1.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_EF-hand_Ca_insen,pfam_SH3_domain,pfam_EF-hand,pfam_SH3_2,superfamily_SH3_domain,smart_Spectrin/alpha-actinin,smart_SH3_domain,smart_EF_hand_Ca-bd,prints_Spectrin_alpha_SH3,prints_SH3_domain,pfscan_EF_HAND_2,pfscan_SH3_domain	-	no_errors	SPTAN1	HGNC	ENSG00000197694	53	0	0.00	22	19	46.34	-	-	-
SPTAN1	0	genome.wustl.edu	37	9	131374450	131374450	+	Missense_Mutation	SNP	C	C	G			TCGA-AR-A254-01A-21D-A167-09	TCGA-AR-A254-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe2bdac0-832e-4268-bd8f-5dcfffda1979	d139e454-63f2-42da-8ab5-997fca0482b8	9	131374450	131374450	C	G	SNP	SPTAN1	ENST00000358161	human	ensembl	69_37n	+1	known	missense	c.4968	p.S1656R	1.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_EF-hand_Ca_insen,pfam_SH3_domain,pfam_EF-hand,pfam_SH3_2,superfamily_SH3_domain,smart_Spectrin/alpha-actinin,smart_SH3_domain,smart_EF_hand_Ca-bd,prints_Spectrin_alpha_SH3,prints_SH3_domain,pfscan_EF_HAND_2,pfscan_SH3_domain	-	no_errors	SPTAN1	HGNC	ENSG00000197694	50	0	0.00	23	19	45.24	-	-	-
SYNPO	0	genome.wustl.edu	37	5	150029320	150029320	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A254-01A-21D-A167-09	TCGA-AR-A254-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe2bdac0-832e-4268-bd8f-5dcfffda1979	d139e454-63f2-42da-8ab5-997fca0482b8	5	150029320	150029320	G	A	SNP	SYNPO	ENST00000394243	human	ensembl	69_37n	+1	known	missense	c.2215	p.V739I	0.993	NULL	NULL	-	no_errors	SYNPO	HGNC	ENSG00000171992	20	0	0.00	11	5	31.25	-	-	-
SYT3	0	genome.wustl.edu	37	19	51129221	51129221	+	Silent	SNP	G	G	A			TCGA-AR-A254-01A-21D-A167-09	TCGA-AR-A254-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe2bdac0-832e-4268-bd8f-5dcfffda1979	d139e454-63f2-42da-8ab5-997fca0482b8	19	51129221	51129221	G	A	SNP	SYT3	ENST00000338916	human	ensembl	69_37n	-1	known	silent	c.1335	p.A445	0.916	superfamily_C2_Ca/lipid-bd_dom_CaLB,pfscan_C2_membr_targeting	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting,prints_Synaptotagmin,prints_C2_dom	-	no_errors	SYT3	HGNC	ENSG00000213023	46	0	0.00	30	4	11.76	-	-	-
TADA2A	0	genome.wustl.edu	37	17	35822222	35822222	+	Nonsense_Mutation	SNP	C	C	T			TCGA-AR-A254-01A-21D-A167-09	TCGA-AR-A254-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe2bdac0-832e-4268-bd8f-5dcfffda1979	d139e454-63f2-42da-8ab5-997fca0482b8	17	35822222	35822222	C	T	SNP	TADA2A	ENST00000225396	human	ensembl	69_37n	+1	known	nonsense	c.709	p.Q237*	1.000	pirsf_Transcriptional_adaptor_2	pfam_SWIRM,pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pirsf_Transcriptional_adaptor_2,pfscan_SWIRM,pfscan_Myb-like_dom	-	no_errors	TADA2A	HGNC	ENSG00000108264	78	0	0.00	59	21	26.25	-	-	-
TNR	0	genome.wustl.edu	37	1	175323569	175323569	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A254-01A-21D-A167-09	TCGA-AR-A254-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe2bdac0-832e-4268-bd8f-5dcfffda1979	d139e454-63f2-42da-8ab5-997fca0482b8	1	175323569	175323569	C	T	SNP	TNR	ENST00000263525	human	ensembl	69_37n	-1	known	missense	c.3340	p.D1114N	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C,superfamily_Fibronectin_type3,smart_EGF-like,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C,pfscan_Fibronectin_type3	-	no_errors	TNR	HGNC	ENSG00000116147	72	0	0.00	82	11	11.83	-	-	-
TP53	0	genome.wustl.edu	37	17	7579315	7579315	+	Nonsense_Mutation	SNP	G	G	T			TCGA-AR-A254-01A-21D-A167-09	TCGA-AR-A254-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe2bdac0-832e-4268-bd8f-5dcfffda1979	d139e454-63f2-42da-8ab5-997fca0482b8	17	7579315	7579315	G	T	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	nonsense	c.372	p.C124*	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	11	0	0.00	6	6	50.00	-	-	-
TRA2B	0	genome.wustl.edu	37	3	185643364	185643364	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A254-01A-21D-A167-09	TCGA-AR-A254-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe2bdac0-832e-4268-bd8f-5dcfffda1979	d139e454-63f2-42da-8ab5-997fca0482b8	3	185643364	185643364	C	T	SNP	TRA2B	ENST00000453386	human	ensembl	69_37n	-1	known	missense	c.221	p.R74H	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	TRA2B	HGNC	ENSG00000136527	52	0	0.00	28	10	26.32	-	-	-
TRIM32	0	genome.wustl.edu	37	9	119460572	119460572	+	Missense_Mutation	SNP	T	T	A			TCGA-AR-A254-01A-21D-A167-09	TCGA-AR-A254-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe2bdac0-832e-4268-bd8f-5dcfffda1979	d139e454-63f2-42da-8ab5-997fca0482b8	9	119460572	119460572	T	A	SNP	TRIM32	ENST00000373983	human	ensembl	69_37n	+1	known	missense	c.551	p.V184D	1.000	NULL	pfam_NHL_repeat,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,smart_Znf_B-box,pfscan_NHL_repeat_subgr,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM32	HGNC	ENSG00000119401	36	0	0.00	17	5	22.73	-	-	-
TRIM34	0	genome.wustl.edu	37	11	5631431	5631431	+	Missense_Mutation	SNP	T	T	A			TCGA-AR-A254-01A-21D-A167-09	TCGA-AR-A254-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe2bdac0-832e-4268-bd8f-5dcfffda1979	d139e454-63f2-42da-8ab5-997fca0482b8	11	5631431	5631431	T	A	SNP	TRIM34	ENST00000337072	human	ensembl	69_37n	+1	known	missense	c.914	p.M305K	0.000	NULL	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl,smart_Znf_RING,smart_Znf_B-box,smart_SPla/RYanodine_receptor_subgr,prints_Butyrophylin,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM34	HGNC	ENSG00000258659	44	0	0.00	20	5	20.00	-	-	-
ZSCAN20	0	genome.wustl.edu	37	1	33956999	33956999	+	Frame_Shift_Del	DEL	A	A	-			TCGA-AR-A254-01A-21D-A167-09	TCGA-AR-A254-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fe2bdac0-832e-4268-bd8f-5dcfffda1979	d139e454-63f2-42da-8ab5-997fca0482b8	1	33956999	33956999	A	-	DEL	ZSCAN20	ENST00000326544	human	ensembl	69_37n	+1	known	frame_shift_del	c.1141	p.N382fs	1.000	smart_SANT/Myb	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_SANT/Myb,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZSCAN20	HGNC	ENSG00000121903	22	0	0.00	15	2	11.76	-	-	-
