Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
ABCA9	0	genome.wustl.edu	37	17	67029972	67029972	+	Missense_Mutation	SNP	C	C	A			TCGA-AR-A2LL-01A-11D-A17W-09	TCGA-AR-A2LL-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b2fb8e3-62a1-45b0-9d8d-c2b2e9d392ee	2db1c6af-2da9-4408-b5cf-b1f0e65ec6e0	17	67029972	67029972	C	A	SNP	ABCA9	ENST00000340001	human	ensembl	69_37n	-1	known	missense	c.1171	p.D391Y	0.003	NULL	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA9	HGNC	ENSG00000154258	58	0	0.00	88	26	22.81	-	-	-
C14orf105	0	genome.wustl.edu	37	14	57949847	57949847	+	Missense_Mutation	SNP	G	G	T			TCGA-AR-A2LL-01A-11D-A17W-09	TCGA-AR-A2LL-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b2fb8e3-62a1-45b0-9d8d-c2b2e9d392ee	2db1c6af-2da9-4408-b5cf-b1f0e65ec6e0	14	57949847	57949847	G	T	SNP	C14orf105	ENST00000216445	human	ensembl	69_37n	-1	known	missense	c.329	p.P110Q	1.000	NULL	NULL	-	no_errors	C14orf105	HGNC	ENSG00000100557	80	0	0.00	91	33	26.61	-	-	-
CD48	0	genome.wustl.edu	37	1	160654790	160654790	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A2LL-01A-11D-A17W-09	TCGA-AR-A2LL-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b2fb8e3-62a1-45b0-9d8d-c2b2e9d392ee	2db1c6af-2da9-4408-b5cf-b1f0e65ec6e0	1	160654790	160654790	C	T	SNP	CD48	ENST00000368046	human	ensembl	69_37n	-1	known	missense	c.272	p.S91N	0.000	pfam_Ig_V-set,smart_Ig_sub	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like	-	no_errors	CD48	HGNC	ENSG00000117091	46	0	0.00	95	55	36.67	-	-	-
CDH1	0	genome.wustl.edu	37	16	68844244	68844244	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A2LL-01A-11D-A17W-09	TCGA-AR-A2LL-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b2fb8e3-62a1-45b0-9d8d-c2b2e9d392ee	2db1c6af-2da9-4408-b5cf-b1f0e65ec6e0	16	68844244	68844244	G	A	SNP	CDH1	ENST00000261769	human	ensembl	69_37n	+1	known	missense	c.832	p.G278R	1.000	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH1	HGNC	ENSG00000039068	43	0	0.00	17	11	39.29	-	-	-
CLNK	0	genome.wustl.edu	37	4	10515108	10515108	+	Missense_Mutation	SNP	G	G	T			TCGA-AR-A2LL-01A-11D-A17W-09	TCGA-AR-A2LL-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b2fb8e3-62a1-45b0-9d8d-c2b2e9d392ee	2db1c6af-2da9-4408-b5cf-b1f0e65ec6e0	4	10515108	10515108	G	T	SNP	CLNK	ENST00000226951	human	ensembl	69_37n	-1	known	missense	c.886	p.P296T	0.120	NULL	pfam_SH2,smart_SH2,prints_SH2,pfscan_SH2	-	no_errors	CLNK	HGNC	ENSG00000109684	61	0	0.00	58	58	50.00	-	-	-
CSNK1G2	0	genome.wustl.edu	37	19	1978327	1978327	+	Missense_Mutation	SNP	T	T	C			TCGA-AR-A2LL-01A-11D-A17W-09	TCGA-AR-A2LL-10A-01D-A17W-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b2fb8e3-62a1-45b0-9d8d-c2b2e9d392ee	2db1c6af-2da9-4408-b5cf-b1f0e65ec6e0	19	1978327	1978327	T	C	SNP	CSNK1G2	ENST00000255641	human	ensembl	69_37n	+1	known	missense	c.211	p.Y71H	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Casein_kinase-1_gamma_C,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CSNK1G2	HGNC	ENSG00000133275	22	0	0.00	25	8	24.24	-	-	-
EPHA2	0	genome.wustl.edu	37	1	16464648	16464648	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A2LL-01A-11D-A17W-09	TCGA-AR-A2LL-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b2fb8e3-62a1-45b0-9d8d-c2b2e9d392ee	2db1c6af-2da9-4408-b5cf-b1f0e65ec6e0	1	16464648	16464648	C	T	SNP	EPHA2	ENST00000358432	human	ensembl	69_37n	-1	known	missense	c.1012	p.V338M	0.166	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_cat_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,pfam_Interferon_alpha/beta_rcpt_bsu,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_cat_dom	-	no_errors	EPHA2	HGNC	ENSG00000142627	10	0	0.00	10	5	33.33	-	-	-
FCGBP	0	genome.wustl.edu	37	19	40377034	40377034	+	Silent	SNP	G	G	A			TCGA-AR-A2LL-01A-11D-A17W-09	TCGA-AR-A2LL-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b2fb8e3-62a1-45b0-9d8d-c2b2e9d392ee	2db1c6af-2da9-4408-b5cf-b1f0e65ec6e0	19	40377034	40377034	G	A	SNP	FCGBP	ENST00000221347	human	ensembl	69_37n	-1	known	silent	c.11388	p.N3796	0.470	pfam_VWF_type-D,smart_VWF_type-D	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_Fol_N,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EGF-like,smart_VWF_C,smart_VWC_out	-	no_errors	FCGBP	HGNC	ENSG00000090920	21	0	0.00	31	6	16.22	-	-	-
FKTN	0	genome.wustl.edu	37	9	108380351	108380351	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A2LL-01A-11D-A17W-09	TCGA-AR-A2LL-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b2fb8e3-62a1-45b0-9d8d-c2b2e9d392ee	2db1c6af-2da9-4408-b5cf-b1f0e65ec6e0	9	108380351	108380351	C	T	SNP	FKTN	ENST00000223528	human	ensembl	69_37n	+1	known	missense	c.1022	p.P341L	0.998	pfam_LicD	pfam_LicD,superfamily_Hedgehog_sig/DD-Pept_Zn-bd_dom	-	no_errors	FKTN	HGNC	ENSG00000106692	41	0	0.00	21	6	22.22	-	-	-
FRMD3	0	genome.wustl.edu	37	9	85905548	85905548	+	Missense_Mutation	SNP	C	C	G			TCGA-AR-A2LL-01A-11D-A17W-09	TCGA-AR-A2LL-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b2fb8e3-62a1-45b0-9d8d-c2b2e9d392ee	2db1c6af-2da9-4408-b5cf-b1f0e65ec6e0	9	85905548	85905548	C	G	SNP	FRMD3	ENST00000304195	human	ensembl	69_37n	-1	known	missense	c.1165	p.E389Q	0.998	NULL	pfam_FERM_N,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM-adjacent,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain,prints_Band_41_fam,prints_Ez/rad/moesin	-	no_errors	FRMD3	HGNC	ENSG00000172159	43	0	0.00	57	42	42.42	-	-	-
GRPR	0	genome.wustl.edu	37	X	16170432	16170432	+	Silent	SNP	C	C	T			TCGA-AR-A2LL-01A-11D-A17W-09	TCGA-AR-A2LL-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b2fb8e3-62a1-45b0-9d8d-c2b2e9d392ee	2db1c6af-2da9-4408-b5cf-b1f0e65ec6e0	X	16170432	16170432	C	T	SNP	GRPR	ENST00000380289	human	ensembl	69_37n	+1	known	silent	c.819	p.F273	0.843	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Bombsn_rcpt,prints_Gastrin_pep_rcpt,prints_7TM_GPCR_Rhodpsn,prints_NPY_rcpt	-	no_errors	GRPR	HGNC	ENSG00000126010	38	0	0.00	22	12	35.29	-	-	-
HERC6	0	genome.wustl.edu	37	4	89338639	89338639	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A2LL-01A-11D-A17W-09	TCGA-AR-A2LL-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b2fb8e3-62a1-45b0-9d8d-c2b2e9d392ee	2db1c6af-2da9-4408-b5cf-b1f0e65ec6e0	4	89338639	89338639	G	A	SNP	HERC6	ENST00000264346	human	ensembl	69_37n	+1	known	missense	c.1621	p.A541T	0.012	NULL	pfam_HECT,pfam_Reg_chr_condens,superfamily_HECT,superfamily_Reg_csome_cond/b-lactamase_inh,smart_HECT,pfscan_HECT,pfscan_Reg_chr_condens,prints_Reg_chr_condens	-	no_errors	HERC6	HGNC	ENSG00000138642	75	0	0.00	83	18	17.82	-	-	-
IL1RAPL2	0	genome.wustl.edu	37	X	105011476	105011476	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A2LL-01A-11D-A17W-09	TCGA-AR-A2LL-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b2fb8e3-62a1-45b0-9d8d-c2b2e9d392ee	2db1c6af-2da9-4408-b5cf-b1f0e65ec6e0	X	105011476	105011476	C	T	SNP	IL1RAPL2	ENST00000344799	human	ensembl	69_37n	+1	known	missense	c.1883	p.T628M	0.217	NULL	pfam_TIR_dom,superfamily_TIR_dom,smart_Ig_sub,smart_TIR_dom,pfscan_TIR_dom,pfscan_Ig-like,prints_IL1_rcpt_1,prints_Interleukin-1_rcpt_II	-	no_errors	IL1RAPL2	HGNC	ENSG00000189108	65	0	0.00	40	22	35.48	-	-	-
IRAK1BP1	0	genome.wustl.edu	37	6	79577396	79577396	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A2LL-01A-11D-A17W-09	TCGA-AR-A2LL-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b2fb8e3-62a1-45b0-9d8d-c2b2e9d392ee	2db1c6af-2da9-4408-b5cf-b1f0e65ec6e0	6	79577396	79577396	C	T	SNP	IRAK1BP1	ENST00000369940	human	ensembl	69_37n	+1	known	missense	c.103	p.P35S	0.042	NULL	pfam_DUF541	-	no_errors	IRAK1BP1	HGNC	ENSG00000146243	15	0	0.00	17	15	46.88	-	-	-
ITGA6	0	genome.wustl.edu	37	2	173362764	173362764	+	Missense_Mutation	SNP	T	T	C			TCGA-AR-A2LL-01A-11D-A17W-09	TCGA-AR-A2LL-10A-01D-A17W-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b2fb8e3-62a1-45b0-9d8d-c2b2e9d392ee	2db1c6af-2da9-4408-b5cf-b1f0e65ec6e0	2	173362764	173362764	T	C	SNP	ITGA6	ENST00000264106	human	ensembl	69_37n	+1	known	missense	c.3167	p.I1056T	1.000	NULL	pfam_Integrin_alpha-2,pfam_FG-GAP,smart_Int_alpha_beta-p,prints_Integrin_alpha	-	no_errors	ITGA6	HGNC	ENSG00000091409	177	0	0.00	146	80	35.40	-	-	-
ITGAM	0	genome.wustl.edu	37	16	31282377	31282377	+	Missense_Mutation	SNP	T	T	C			TCGA-AR-A2LL-01A-11D-A17W-09	TCGA-AR-A2LL-10A-01D-A17W-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b2fb8e3-62a1-45b0-9d8d-c2b2e9d392ee	2db1c6af-2da9-4408-b5cf-b1f0e65ec6e0	16	31282377	31282377	T	C	SNP	ITGAM	ENST00000544665	human	ensembl	69_37n	+1	known	missense	c.530	p.M177T	1.000	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_FG-GAP,pfam_Integrin_alpha_C_CS,smart_Int_alpha_beta-p,smart_VWF_A,pfscan_VWF_A,prints_Integrin_alpha	-	no_errors	ITGAM	HGNC	ENSG00000169896	56	0	0.00	51	30	37.04	-	-	-
KLF15	0	genome.wustl.edu	37	3	126070862	126070862	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A2LL-01A-11D-A17W-09	TCGA-AR-A2LL-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b2fb8e3-62a1-45b0-9d8d-c2b2e9d392ee	2db1c6af-2da9-4408-b5cf-b1f0e65ec6e0	3	126070862	126070862	C	T	SNP	KLF15	ENST00000296233	human	ensembl	69_37n	-1	known	missense	c.904	p.G302S	0.448	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	KLF15	HGNC	ENSG00000163884	53	0	0.00	39	34	46.58	-	-	-
MYO3B	0	genome.wustl.edu	37	2	171509542	171509542	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A2LL-01A-11D-A17W-09	TCGA-AR-A2LL-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b2fb8e3-62a1-45b0-9d8d-c2b2e9d392ee	2db1c6af-2da9-4408-b5cf-b1f0e65ec6e0	2	171509542	171509542	C	T	SNP	MYO3B	ENST00000334231	human	ensembl	69_37n	+1	known	missense	c.3964	p.P1322S	0.991	NULL	pfam_Myosin_head_motor_dom,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,pfscan_Prot_kinase_cat_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO3B	HGNC	ENSG00000071909	77	0	0.00	63	31	32.98	-	-	-
NUP98	0	genome.wustl.edu	37	11	3723746	3723746	+	Missense_Mutation	SNP	C	C	A			TCGA-AR-A2LL-01A-11D-A17W-09	TCGA-AR-A2LL-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b2fb8e3-62a1-45b0-9d8d-c2b2e9d392ee	2db1c6af-2da9-4408-b5cf-b1f0e65ec6e0	11	3723746	3723746	C	A	SNP	NUP98	ENST00000324932	human	ensembl	69_37n	-1	known	missense	c.3459	p.Q1153H	0.306	NULL	pfam_Nup96,pfam_Peptidase_S59,superfamily_Peptidase_S59	-	no_errors	NUP98	HGNC	ENSG00000110713	48	0	0.00	36	20	35.71	-	-	-
OR4C5	0	genome.wustl.edu	37	11	48387505	48387505	+	Silent	SNP	G	G	A			TCGA-AR-A2LL-01A-11D-A17W-09	TCGA-AR-A2LL-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b2fb8e3-62a1-45b0-9d8d-c2b2e9d392ee	2db1c6af-2da9-4408-b5cf-b1f0e65ec6e0	11	48387505	48387505	G	A	SNP	OR4C5	ENST00000319813	human	ensembl	69_37n	-1	known	silent	c.513	p.V171	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR4C5	HGNC	ENSG00000176540	20	0	0.00	11	5	31.25	-	-	-
OR4F17	0	genome.wustl.edu	37	19	111016	111016	+	Missense_Mutation	SNP	T	T	G			TCGA-AR-A2LL-01A-11D-A17W-09	TCGA-AR-A2LL-10A-01D-A17W-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b2fb8e3-62a1-45b0-9d8d-c2b2e9d392ee	2db1c6af-2da9-4408-b5cf-b1f0e65ec6e0	19	111016	111016	T	G	SNP	OR4F17	ENST00000318050	human	ensembl	69_37n	+1	known	missense	c.338	p.F113C	0.999	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR4F17	HGNC	ENSG00000176695	20	0	0.00	7	4	36.36	-	-	-
OR8K3	0	genome.wustl.edu	37	11	56086657	56086657	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A2LL-01A-11D-A17W-09	TCGA-AR-A2LL-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b2fb8e3-62a1-45b0-9d8d-c2b2e9d392ee	2db1c6af-2da9-4408-b5cf-b1f0e65ec6e0	11	56086657	56086657	G	A	SNP	OR8K3	ENST00000312711	human	ensembl	69_37n	+1	known	missense	c.875	p.R292Q	0.997	prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR8K3	HGNC	ENSG00000181689	66	0	0.00	49	6	10.91	-	-	-
PTEN	0	genome.wustl.edu	37	10	89692886	89692886	+	Missense_Mutation	SNP	T	T	A			TCGA-AR-A2LL-01A-11D-A17W-09	TCGA-AR-A2LL-10A-01D-A17W-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b2fb8e3-62a1-45b0-9d8d-c2b2e9d392ee	2db1c6af-2da9-4408-b5cf-b1f0e65ec6e0	10	89692886	89692886	T	A	SNP	PTEN	ENST00000371953	human	ensembl	69_37n	+1	known	missense	c.370	p.C124S	1.000	pfam_Dual-sp_phosphatase_cat-dom,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Bifunc_PIno_P3_Pase/Pase_PTEN,pfscan_Tyr/Dual-specificity_Pase,pfscan_Phosphatase_tensin-typ	pfam_Tensin_phosphatase_C2-dom,pfam_Dual-sp_phosphatase_cat-dom,pfam_Tyr_Pase_rcpt/non-rcpt,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Tyr_Pase_cat,pirsf_Bifunc_PIno_P3_Pase/Pase_PTEN,pfscan_Tyr/Dual-specificity_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	PTEN	HGNC	ENSG00000171862	94	0	0.00	28	27	49.09	-	-	-
RAPGEF4	0	genome.wustl.edu	37	2	173891911	173891911	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A2LL-01A-11D-A17W-09	TCGA-AR-A2LL-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b2fb8e3-62a1-45b0-9d8d-c2b2e9d392ee	2db1c6af-2da9-4408-b5cf-b1f0e65ec6e0	2	173891911	173891911	G	A	SNP	RAPGEF4	ENST00000397081	human	ensembl	69_37n	+1	known	missense	c.2482	p.V828I	1.000	pfam_RasGRF_CDC25,superfamily_Ras_GEF_dom,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25	pfam_RasGRF_CDC25,pfam_cNMP-bd_dom,pfam_DEP_dom,pfam_Ras-like_Gua-exchang_fac_N,pfam_Ras-assoc,superfamily_Ras_GEF_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,smart_DEP_dom,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_cNMP-bd_dom,pfscan_DEP_dom,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N,prints_cAMP/cGMP_kin	-	no_errors	RAPGEF4	HGNC	ENSG00000091428	36	0	0.00	33	10	23.26	-	-	-
RAPGEF6	0	genome.wustl.edu	37	5	130825308	130825308	+	Missense_Mutation	SNP	A	A	C			TCGA-AR-A2LL-01A-11D-A17W-09	TCGA-AR-A2LL-10A-01D-A17W-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b2fb8e3-62a1-45b0-9d8d-c2b2e9d392ee	2db1c6af-2da9-4408-b5cf-b1f0e65ec6e0	5	130825308	130825308	A	C	SNP	RAPGEF6	ENST00000509018	human	ensembl	69_37n	-1	known	missense	c.1771	p.F591V	0.968	pfam_PDZ,superfamily_Ras_GEF_dom,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_RasGRF_CDC25,pfam_PDZ,pfam_Ras-assoc,pfam_cNMP-bd_dom,pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,superfamily_PDZ,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,smart_Ras-like_Gua-exchang_fac_N,smart_PDZ,smart_Ras-assoc,smart_RasGRF_CDC25,pfscan_cNMP-bd_dom,pfscan_PDZ,pfscan_Ras-assoc,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RAPGEF6	HGNC	ENSG00000158987	68	0	0.00	55	35	38.89	-	-	-
SIRPB2	0	genome.wustl.edu	37	20	1460499	1460499	+	Missense_Mutation	SNP	G	G	C			TCGA-AR-A2LL-01A-11D-A17W-09	TCGA-AR-A2LL-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b2fb8e3-62a1-45b0-9d8d-c2b2e9d392ee	2db1c6af-2da9-4408-b5cf-b1f0e65ec6e0	20	1460499	1460499	G	C	SNP	SIRPB2	ENST00000359801	human	ensembl	69_37n	-1	known	missense	c.297	p.I99M	0.147	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_V-set,pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	SIRPB2	HGNC	ENSG00000196209	46	0	0.00	75	19	20.21	-	-	-
SOGA2	0	genome.wustl.edu	37	18	8784388	8784388	+	Silent	SNP	G	G	A			TCGA-AR-A2LL-01A-11D-A17W-09	TCGA-AR-A2LL-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b2fb8e3-62a1-45b0-9d8d-c2b2e9d392ee	2db1c6af-2da9-4408-b5cf-b1f0e65ec6e0	18	8784388	8784388	G	A	SNP	SOGA2	ENST00000359865	human	ensembl	69_37n	+1	known	silent	c.1278	p.S426	0.774	NULL	pfam_DUF3166	-	no_errors	SOGA2	HGNC	ENSG00000168502	27	0	0.00	25	5	16.67	-	-	-
TUBA3C	0	genome.wustl.edu	37	13	19748238	19748238	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A2LL-01A-11D-A17W-09	TCGA-AR-A2LL-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b2fb8e3-62a1-45b0-9d8d-c2b2e9d392ee	2db1c6af-2da9-4408-b5cf-b1f0e65ec6e0	13	19748238	19748238	C	T	SNP	TUBA3C	ENST00000400113	human	ensembl	69_37n	-1	known	missense	c.1118	p.R373Q	1.000	pfam_Tubulin/FtsZ_2-layer-sand-dom,superfamily_Tub_FtsZ_C,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Alpha_tubulin,prints_Delta_tubulin	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Alpha_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Delta_tubulin,prints_Beta_tubulin	-	no_errors	TUBA3C	HGNC	ENSG00000198033	64	0	0.00	36	23	38.98	-	-	-
WDR25	0	genome.wustl.edu	37	14	100847946	100847946	+	Missense_Mutation	SNP	T	T	C			TCGA-AR-A2LL-01A-11D-A17W-09	TCGA-AR-A2LL-10A-01D-A17W-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b2fb8e3-62a1-45b0-9d8d-c2b2e9d392ee	2db1c6af-2da9-4408-b5cf-b1f0e65ec6e0	14	100847946	100847946	T	C	SNP	WDR25	ENST00000335290	human	ensembl	69_37n	+1	known	missense	c.685	p.Y229H	0.001	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR25	HGNC	ENSG00000176473	28	0	0.00	30	9	23.08	-	-	-
WNT16	0	genome.wustl.edu	37	7	120969710	120969711	+	Frame_Shift_Ins	INS	-	-	TT			TCGA-AR-A2LL-01A-11D-A17W-09	TCGA-AR-A2LL-10A-01D-A17W-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b2fb8e3-62a1-45b0-9d8d-c2b2e9d392ee	2db1c6af-2da9-4408-b5cf-b1f0e65ec6e0	7	120969710	120969711	-	TT	INS	WNT16	ENST00000222462	human	ensembl	69_37n	+1	known	frame_shift_ins	c.185_186	p.R62fs	0.992:1.000	pfam_Wnt,smart_Wnt	pfam_Wnt,smart_Wnt,prints_Wnt16,prints_Wnt	-	no_errors	WNT16	HGNC	ENSG00000002745	15	0	0.00	27	7	20.59	-	-	-
