Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
ADAM21P1	0	genome.wustl.edu	37	14	70714300	70714300	+	RNA	SNP	A	A	G			TCGA-B6-A0WY-01A-11D-A10G-09	TCGA-B6-A0WY-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c973a902-abdf-41a3-8250-57011dfef1f4	d6007264-3412-46b3-8775-f2c42146de20	14	70714300	70714300	A	G	SNP	ADAM21P1	ENST00000530196	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ADAM21P1	HGNC	ENSG00000235812	32	0	0.00	160	31	16.15	-	-	-
CHD1L	0	genome.wustl.edu	37	1	146747774	146747775	+	Frame_Shift_Ins	INS	-	-	A			TCGA-B6-A0WY-01A-11D-A10G-09	TCGA-B6-A0WY-10A-01D-A10G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c973a902-abdf-41a3-8250-57011dfef1f4	d6007264-3412-46b3-8775-f2c42146de20	1	146747774	146747775	-	A	INS	CHD1L	ENST00000369258	human	ensembl	69_37n	+1	known	frame_shift_ins	c.1392_1393	p.V465fs	0.964:0.999	pfam_HDA_complex_subunit-2/3,pfscan_Helicase_C	pfam_SNF2_N,pfam_Helicase_C,pfam_HDA_complex_subunit-2/3,pfam_Helicase/UvrB_dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_A1pp,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	CHD1L	HGNC	ENSG00000131778	39	0	0.00	116	15	11.45	-	-	-
ENDOU	0	genome.wustl.edu	37	12	48110712	48110712	+	Missense_Mutation	SNP	G	G	A			TCGA-B6-A0WY-01A-11D-A10G-09	TCGA-B6-A0WY-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c973a902-abdf-41a3-8250-57011dfef1f4	d6007264-3412-46b3-8775-f2c42146de20	12	48110712	48110712	G	A	SNP	ENDOU	ENST00000229003	human	ensembl	69_37n	-1	known	missense	c.389	p.P130L	0.222	pfam_Endoribonuclease_XendoU	pfam_Endoribonuclease_XendoU,pfam_Somatomedin_B_dom,smart_Somatomedin_B_dom,pfscan_Somatomedin_B_dom,prints_Somatomedin_B_chordata	-	no_errors	ENDOU	HGNC	ENSG00000111405	77	0	0.00	288	36	11.11	-	-	-
ERP27	0	genome.wustl.edu	37	12	15068440	15068440	+	Silent	SNP	G	G	A			TCGA-B6-A0WY-01A-11D-A10G-09	TCGA-B6-A0WY-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c973a902-abdf-41a3-8250-57011dfef1f4	d6007264-3412-46b3-8775-f2c42146de20	12	15068440	15068440	G	A	SNP	ERP27	ENST00000266397	human	ensembl	69_37n	-1	known	silent	c.757	p.L253	0.972	superfamily_Thioredoxin-like_fold	superfamily_Thioredoxin-like_fold	-	no_errors	ERP27	HGNC	ENSG00000139055	69	0	0.00	171	34	16.59	-	-	-
FBN1	0	genome.wustl.edu	37	15	48766481	48766481	+	Missense_Mutation	SNP	C	C	A			TCGA-B6-A0WY-01A-11D-A10G-09	TCGA-B6-A0WY-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c973a902-abdf-41a3-8250-57011dfef1f4	d6007264-3412-46b3-8775-f2c42146de20	15	48766481	48766481	C	A	SNP	FBN1	ENST00000316623	human	ensembl	69_37n	-1	known	missense	c.4181	p.G1394V	1.000	pfam_EGF-like_Ca-bd,smart_EGF-like_Ca-bd,smart_EGF-like,pirsf_Fibrillin,pfscan_EG-like_dom	pfam_EGF-like_Ca-bd,pfam_EGF-like_dom,pfam_TB_dom,superfamily_TB_dom,superfamily_Growth_fac_rcpt,smart_EGF-like,smart_EGF-like_Ca-bd,pirsf_Fibrillin,pfscan_EG-like_dom	-	no_errors	FBN1	HGNC	ENSG00000166147	36	0	0.00	162	29	15.18	-	-	-
HERC2	0	genome.wustl.edu	37	15	28389261	28389261	+	Missense_Mutation	SNP	G	G	A			TCGA-B6-A0WY-01A-11D-A10G-09	TCGA-B6-A0WY-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c973a902-abdf-41a3-8250-57011dfef1f4	d6007264-3412-46b3-8775-f2c42146de20	15	28389261	28389261	G	A	SNP	HERC2	ENST00000261609	human	ensembl	69_37n	-1	known	missense	c.11261	p.A3754V	1.000	NULL	pfam_Reg_chr_condens,pfam_HECT,pfam_CPH_domain,pfam_Mib_Herc2,pfam_Cyt_B5,pfam_Znf_ZZ,pfam_APC_su10/DOC_dom,superfamily_Reg_csome_cond/b-lactamase_inh,superfamily_HECT,superfamily_Galactose-bd-like,superfamily_Cyt_B5,superfamily_UBA-like,superfamily_CUB,smart_Beta-propeller_rpt_TECPR,smart_Znf_ZZ,smart_HECT,pfscan_HECT,pfscan_Znf_ZZ,pfscan_Reg_chr_condens,pfscan_Cyt_B5,prints_Reg_chr_condens	-	no_errors	HERC2	HGNC	ENSG00000128731	16	0	0.00	60	15	19.74	-	-	-
KIAA2026	0	genome.wustl.edu	37	9	5922013	5922013	+	Missense_Mutation	SNP	G	G	A			TCGA-B6-A0WY-01A-11D-A10G-09	TCGA-B6-A0WY-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c973a902-abdf-41a3-8250-57011dfef1f4	d6007264-3412-46b3-8775-f2c42146de20	9	5922013	5922013	G	A	SNP	KIAA2026	ENST00000399933	human	ensembl	69_37n	-1	novel	missense	c.3983	p.T1328I	1.000	NULL	superfamily_Bromodomain	-	no_errors	KIAA2026	HGNC	ENSG00000183354	118	0	0.00	152	53	25.73	-	-	-
MLL4	0	genome.wustl.edu	37	19	36220093	36220093	+	Nonsense_Mutation	SNP	G	G	T			TCGA-B6-A0WY-01A-11D-A10G-09	TCGA-B6-A0WY-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c973a902-abdf-41a3-8250-57011dfef1f4	d6007264-3412-46b3-8775-f2c42146de20	19	36220093	36220093	G	T	SNP	MLL4	ENST00000222270	human	ensembl	69_37n	+1	known	nonsense	c.4813	p.E1605*	1.000	pirsf_MeTrfase_trithorax	pirsf_MeTrfase_trithorax,pfam_SET_dom,pfam_FYrich_C,pfam_Znf_PHD-finger,pfam_FYrich_N,pfam_Znf_CXXC,superfamily_Znf_FYVE_PHD,superfamily_Bromodomain,smart_Znf_PHD,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC	-	no_errors	MLL4	Clone_based_vega_gene	ENSG00000105663	12	0	0.00	98	28	22.05	-	-	-
MST1	0	genome.wustl.edu	37	3	49726070	49726070	+	Missense_Mutation	SNP	G	G	A			TCGA-B6-A0WY-01A-11D-A10G-09	TCGA-B6-A0WY-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c973a902-abdf-41a3-8250-57011dfef1f4	d6007264-3412-46b3-8775-f2c42146de20	3	49726070	49726070	G	A	SNP	MST1	ENST00000449682	human	ensembl	69_37n	-1	known	missense	c.55	p.P19S	0.908	NULL	pfam_Kringle,pfam_Peptidase_S1_S6,pfam_PAN-1_domain,superfamily_Pept_cys/ser_Trypsin-like,superfamily_Kringle-like,smart_Pan_app,smart_Kringle,smart_Peptidase_S1_S6,pfscan_Pan_app,pfscan_Kringle,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	MST1	HGNC	ENSG00000173531	14	0	0.00	45	14	23.73	-	-	-
NCOR1	0	genome.wustl.edu	37	17	16049835	16049835	+	Nonsense_Mutation	SNP	G	G	A			TCGA-B6-A0WY-01A-11D-A10G-09	TCGA-B6-A0WY-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c973a902-abdf-41a3-8250-57011dfef1f4	d6007264-3412-46b3-8775-f2c42146de20	17	16049835	16049835	G	A	SNP	NCOR1	ENST00000268712	human	ensembl	69_37n	-1	known	nonsense	c.937	p.Q313*	1.000	NULL	pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	NCOR1	HGNC	ENSG00000141027	219	1	0.45	179	71	28.40	-	-	-
NRAP	0	genome.wustl.edu	37	10	115370292	115370292	+	Nonsense_Mutation	SNP	G	G	A			TCGA-B6-A0WY-01A-11D-A10G-09	TCGA-B6-A0WY-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c973a902-abdf-41a3-8250-57011dfef1f4	d6007264-3412-46b3-8775-f2c42146de20	10	115370292	115370292	G	A	SNP	NRAP	ENST00000369358	human	ensembl	69_37n	-1	known	nonsense	c.3553	p.R1185*	1.000	pfscan_Nebulin_35r-motif	pfam_Nebulin_35r-motif,pfam_Znf_LIM,smart_Znf_LIM,smart_Nebulin_35r-motif,pfscan_Znf_LIM,pfscan_Nebulin_35r-motif,prints_Nebulin	-	no_errors	NRAP	HGNC	ENSG00000197893	75	0	0.00	192	24	11.11	-	-	-
OR2T33	0	genome.wustl.edu	37	1	248436504	248436504	+	Missense_Mutation	SNP	G	G	C			TCGA-B6-A0WY-01A-11D-A10G-09	TCGA-B6-A0WY-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c973a902-abdf-41a3-8250-57011dfef1f4	d6007264-3412-46b3-8775-f2c42146de20	1	248436504	248436504	G	C	SNP	OR2T33	ENST00000318021	human	ensembl	69_37n	-1	known	missense	c.613	p.L205V	0.020	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2T33	HGNC	ENSG00000177212	52	0	0.00	128	19	12.93	-	-	-
SLC6A10P	0	genome.wustl.edu	37	16	32893876	32893876	+	RNA	SNP	T	T	C			TCGA-B6-A0WY-01A-11D-A10G-09	TCGA-B6-A0WY-10A-01D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c973a902-abdf-41a3-8250-57011dfef1f4	d6007264-3412-46b3-8775-f2c42146de20	16	32893876	32893876	T	C	SNP	SLC6A10P	ENST00000330048	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.959	-	-	-	no_errors	SLC6A10P	HGNC	ENSG00000214617	9	0	0.00	40	26	39.39	-	-	-
TERF2IP	0	genome.wustl.edu	37	16	75690148	75690148	+	Missense_Mutation	SNP	G	G	A			TCGA-B6-A0WY-01A-11D-A10G-09	TCGA-B6-A0WY-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c973a902-abdf-41a3-8250-57011dfef1f4	d6007264-3412-46b3-8775-f2c42146de20	16	75690148	75690148	G	A	SNP	TERF2IP	ENST00000300086	human	ensembl	69_37n	+1	putative	missense	c.839	p.C280Y	1.000	NULL	pfam_Rap1_Myb_dom,superfamily_Homeodomain-like,superfamily_BRCT_dom	-	no_errors	TERF2IP	HGNC	ENSG00000166848	35	0	0.00	89	24	21.24	-	-	-
UGGT2	0	genome.wustl.edu	37	13	96555290	96555290	+	Missense_Mutation	SNP	C	C	A			TCGA-B6-A0WY-01A-11D-A10G-09	TCGA-B6-A0WY-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c973a902-abdf-41a3-8250-57011dfef1f4	d6007264-3412-46b3-8775-f2c42146de20	13	96555290	96555290	C	A	SNP	UGGT2	ENST00000376747	human	ensembl	69_37n	-1	known	missense	c.2320	p.G774W	1.000	NULL	pfam_UDP-g_GGtrans,pfam_Glyco_trans_8	-	no_errors	UGGT2	HGNC	ENSG00000102595	117	0	0.00	82	31	27.43	-	-	-
