Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
AIM1L	0	genome.wustl.edu	37	1	26658066	26658067	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29798513-2bb1-49f8-8cf3-c903d72072c3	362512ab-407f-47d5-9d9a-dd29647fd176	1	26658066	26658067	-	A	INS	AIM1L	ENST00000527815	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1606_1605	p.I535fs	0.994:0.993	pfam_Beta/gamma_crystallin,superfamily_G_crystallin-rel,smart_Beta/gamma_crystallin,pfscan_Beta/gamma_crystallin	pfam_Beta/gamma_crystallin,pfam_Ricin_B_lectin,superfamily_G_crystallin-rel,superfamily_Ricin_B_lectin,smart_Beta/gamma_crystallin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin,pfscan_Beta/gamma_crystallin,prints_Beta/gamma_crystallin	-	no_errors	AIM1L	HGNC	ENSG00000176092	37	0	0.00	49	129	72.47	-	-	-
AIM1L	0	genome.wustl.edu	37	1	26658066	26658067	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-11A-41W-A10F-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29798513-2bb1-49f8-8cf3-c903d72072c3	371bff18-75e9-459a-9cf6-417ced089cfc	1	26658066	26658067	-	A	INS	AIM1L	ENST00000527815	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1606_1605	p.I535fs	0.994:0.993	pfam_Beta/gamma_crystallin,superfamily_G_crystallin-rel,smart_Beta/gamma_crystallin,pfscan_Beta/gamma_crystallin	pfam_Beta/gamma_crystallin,pfam_Ricin_B_lectin,superfamily_G_crystallin-rel,superfamily_Ricin_B_lectin,smart_Beta/gamma_crystallin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin,pfscan_Beta/gamma_crystallin,prints_Beta/gamma_crystallin	-	no_errors	AIM1L	HGNC	ENSG00000176092	35	0	0.00	49	129	72.47	-	-	-
ANXA13	0	genome.wustl.edu	37	8	124693590	124693590	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29798513-2bb1-49f8-8cf3-c903d72072c3	362512ab-407f-47d5-9d9a-dd29647fd176	8	124693590	124693590	G	A	SNP	ANXA13	ENST00000262219	human	ensembl	69_37n	-1	known	nonsense	c.964	p.Q322*	0.471	pfam_Annexin_repeat,superfamily_Annexin,smart_Annexin_repeat	pfam_Annexin_repeat,superfamily_Annexin,smart_Annexin_repeat,prints_Annexin,prints_AnnexinXIII	-	no_errors	ANXA13	HGNC	ENSG00000104537	248	0	0.00	431	150	25.82	-	-	-
ANXA13	0	genome.wustl.edu	37	8	124693590	124693590	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-11A-41W-A10F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29798513-2bb1-49f8-8cf3-c903d72072c3	371bff18-75e9-459a-9cf6-417ced089cfc	8	124693590	124693590	G	A	SNP	ANXA13	ENST00000262219	human	ensembl	69_37n	-1	known	nonsense	c.964	p.Q322*	0.471	pfam_Annexin_repeat,superfamily_Annexin,smart_Annexin_repeat	pfam_Annexin_repeat,superfamily_Annexin,smart_Annexin_repeat,prints_Annexin,prints_AnnexinXIII	-	no_errors	ANXA13	HGNC	ENSG00000104537	260	0	0.00	431	150	25.82	-	-	-
BTNL3	0	genome.wustl.edu	37	5	180420116	180420116	+	Missense_Mutation	SNP	C	C	A			TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29798513-2bb1-49f8-8cf3-c903d72072c3	362512ab-407f-47d5-9d9a-dd29647fd176	5	180420116	180420116	C	A	SNP	BTNL3	ENST00000342868	human	ensembl	69_37n	+1	known	missense	c.353	p.S118Y	0.000	pfam_Ig_V-set,smart_Ig_sub	pfam_SPRY_rcpt,pfam_Ig_V-set,superfamily_ConA-like_lec_gl,smart_Ig_sub,smart_Ig_V-set_subgr,smart_PRY,smart_SPla/RYanodine_receptor_subgr,prints_Butyrophylin,pfscan_B30.2/SPRY,pfscan_Ig-like	-	no_errors	BTNL3	HGNC	ENSG00000168903	43	0	0.00	82	21	20.39	-	-	-
BTNL3	0	genome.wustl.edu	37	5	180420116	180420116	+	Missense_Mutation	SNP	C	C	A			TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-11A-41W-A10F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29798513-2bb1-49f8-8cf3-c903d72072c3	371bff18-75e9-459a-9cf6-417ced089cfc	5	180420116	180420116	C	A	SNP	BTNL3	ENST00000342868	human	ensembl	69_37n	+1	known	missense	c.353	p.S118Y	0.000	pfam_Ig_V-set,smart_Ig_sub	pfam_SPRY_rcpt,pfam_Ig_V-set,superfamily_ConA-like_lec_gl,smart_Ig_sub,smart_Ig_V-set_subgr,smart_PRY,smart_SPla/RYanodine_receptor_subgr,prints_Butyrophylin,pfscan_B30.2/SPRY,pfscan_Ig-like	-	no_errors	BTNL3	HGNC	ENSG00000168903	44	0	0.00	82	21	20.39	-	-	-
CBLN1	0	genome.wustl.edu	37	16	49315311	49315312	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-11A-41W-A10F-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29798513-2bb1-49f8-8cf3-c903d72072c3	371bff18-75e9-459a-9cf6-417ced089cfc	16	49315311	49315312	-	A	INS	CBLN1	ENST00000219197	human	ensembl	69_37n	-1	known	frame_shift_ins	c.66_65	p.Q22fs	1.000:1.000	NULL	pfam_C1q,superfamily_Tumour_necrosis_fac-like,smart_C1q,pfscan_C1q,prints_C1q	-	no_errors	CBLN1	HGNC	ENSG00000102924	12	0	0.00	9	11	55.00	-	-	-
CCDC74A	0	genome.wustl.edu	37	2	132289349	132289349	+	Silent	SNP	A	A	G			TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29798513-2bb1-49f8-8cf3-c903d72072c3	362512ab-407f-47d5-9d9a-dd29647fd176	2	132289349	132289349	A	G	SNP	CCDC74A	ENST00000295171	human	ensembl	69_37n	+1	known	silent	c.657	p.K219	0.017	NULL	NULL	-	no_errors	CCDC74A	HGNC	ENSG00000163040	35	0	0.00	41	5	10.87	-	-	-
CDH24	0	genome.wustl.edu	37	14	23523784	23523785	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29798513-2bb1-49f8-8cf3-c903d72072c3	362512ab-407f-47d5-9d9a-dd29647fd176	14	23523784	23523785	-	C	INS	CDH24	ENST00000267383	human	ensembl	69_37n	-1	known	frame_shift_ins	c.715_714	p.L238fs	1.000:1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH24	HGNC	ENSG00000139880	22	0	0.00	46	6	11.54	-	-	-
CDK14	0	genome.wustl.edu	37	7	90233551	90233551	+	Silent	SNP	C	C	T			TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-11A-41W-A10F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29798513-2bb1-49f8-8cf3-c903d72072c3	371bff18-75e9-459a-9cf6-417ced089cfc	7	90233551	90233551	C	T	SNP	CDK14	ENST00000380050	human	ensembl	69_37n	+1	known	silent	c.111	p.T37	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CDK14	HGNC	ENSG00000058091	25	0	0.00	24	4	14.29	-	-	-
CDRT15P1	0	genome.wustl.edu	37	17	13928289	13928289	+	RNA	SNP	G	G	A			TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-11A-41W-A10F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29798513-2bb1-49f8-8cf3-c903d72072c3	371bff18-75e9-459a-9cf6-417ced089cfc	17	13928289	13928289	G	A	SNP	CDRT15P1	ENST00000268714	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.004	-	-	-	no_errors	CDRT15P1	HGNC	ENSG00000141028	18	0	0.00	17	8	32.00	-	-	-
CLN3	0	genome.wustl.edu	37	16	28498857	28498858	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29798513-2bb1-49f8-8cf3-c903d72072c3	362512ab-407f-47d5-9d9a-dd29647fd176	16	28498857	28498858	-	G	INS	CLN3	ENST00000359984	human	ensembl	69_37n	-1	known	frame_shift_ins	c.380_379	p.R127fs	1.000:1.000	pfam_Battenin_disease_Cln3,superfamily_MFS_dom_general_subst_transpt,pirsf_Battenin_disease_Cln3_subgr	pfam_Battenin_disease_Cln3,superfamily_MFS_dom_general_subst_transpt,pirsf_Battenin_disease_Cln3_subgr,prints_Battenin_disease_Cln3	-	no_errors	CLN3	HGNC	ENSG00000188603	31	0	0.00	27	8	22.86	-	-	-
CLN3	0	genome.wustl.edu	37	16	28498857	28498858	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-11A-41W-A10F-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29798513-2bb1-49f8-8cf3-c903d72072c3	371bff18-75e9-459a-9cf6-417ced089cfc	16	28498857	28498858	-	G	INS	CLN3	ENST00000359984	human	ensembl	69_37n	-1	known	frame_shift_ins	c.380_379	p.R127fs	1.000:1.000	pfam_Battenin_disease_Cln3,superfamily_MFS_dom_general_subst_transpt,pirsf_Battenin_disease_Cln3_subgr	pfam_Battenin_disease_Cln3,superfamily_MFS_dom_general_subst_transpt,pirsf_Battenin_disease_Cln3_subgr,prints_Battenin_disease_Cln3	-	no_errors	CLN3	HGNC	ENSG00000188603	40	0	0.00	27	8	22.86	-	-	-
DEDD2	0	genome.wustl.edu	37	19	42713899	42713900	+	Frame_Shift_Ins	INS	-	-	GC			TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29798513-2bb1-49f8-8cf3-c903d72072c3	362512ab-407f-47d5-9d9a-dd29647fd176	19	42713899	42713900	-	GC	INS	DEDD2	ENST00000336034	human	ensembl	69_37n	-1	known	frame_shift_ins	c.542_541	p.Q181fs	1.000:1.000	NULL	pfam_DED,superfamily_DEATH-like,smart_DED,pfscan_DED	-	no_errors	DEDD2	HGNC	ENSG00000160570	91	0	0.00	103	79	43.41	-	-	-
DEDD2	0	genome.wustl.edu	37	19	42713899	42713900	+	Frame_Shift_Ins	INS	-	-	GC			TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-11A-41W-A10F-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29798513-2bb1-49f8-8cf3-c903d72072c3	371bff18-75e9-459a-9cf6-417ced089cfc	19	42713899	42713900	-	GC	INS	DEDD2	ENST00000336034	human	ensembl	69_37n	-1	known	frame_shift_ins	c.542_541	p.Q181fs	1.000:1.000	NULL	pfam_DED,superfamily_DEATH-like,smart_DED,pfscan_DED	-	no_errors	DEDD2	HGNC	ENSG00000160570	50	0	0.00	103	79	43.41	-	-	-
DEDD2	0	genome.wustl.edu	37	19	42713903	42713903	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29798513-2bb1-49f8-8cf3-c903d72072c3	362512ab-407f-47d5-9d9a-dd29647fd176	19	42713903	42713903	G	-	DEL	DEDD2	ENST00000336034	human	ensembl	69_37n	-1	known	frame_shift_del	c.538	p.Q180fs	0.998	NULL	pfam_DED,superfamily_DEATH-like,smart_DED,pfscan_DED	-	no_errors	DEDD2	HGNC	ENSG00000160570	86	0	0.00	86	76	46.91	-	-	-
DEDD2	0	genome.wustl.edu	37	19	42713903	42713903	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-11A-41W-A10F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29798513-2bb1-49f8-8cf3-c903d72072c3	371bff18-75e9-459a-9cf6-417ced089cfc	19	42713903	42713903	G	-	DEL	DEDD2	ENST00000336034	human	ensembl	69_37n	-1	known	frame_shift_del	c.538	p.Q180fs	0.998	NULL	pfam_DED,superfamily_DEATH-like,smart_DED,pfscan_DED	-	no_errors	DEDD2	HGNC	ENSG00000160570	54	0	0.00	86	76	46.91	-	-	-
DHX32	0	genome.wustl.edu	37	10	127530357	127530357	+	Missense_Mutation	SNP	A	A	T			TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29798513-2bb1-49f8-8cf3-c903d72072c3	362512ab-407f-47d5-9d9a-dd29647fd176	10	127530357	127530357	A	T	SNP	DHX32	ENST00000284690	human	ensembl	69_37n	-1	known	missense	c.1498	p.F500I	1.000	pfam_Helicase-assoc_dom,smart_Helicase-assoc_dom	pfam_Helicase-assoc_dom,pfam_DUF1605,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd	-	no_errors	DHX32	HGNC	ENSG00000089876	63	0	0.00	65	43	39.81	-	-	-
DHX32	0	genome.wustl.edu	37	10	127530357	127530357	+	Missense_Mutation	SNP	A	A	T			TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-11A-41W-A10F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29798513-2bb1-49f8-8cf3-c903d72072c3	371bff18-75e9-459a-9cf6-417ced089cfc	10	127530357	127530357	A	T	SNP	DHX32	ENST00000284690	human	ensembl	69_37n	-1	known	missense	c.1498	p.F500I	1.000	pfam_Helicase-assoc_dom,smart_Helicase-assoc_dom	pfam_Helicase-assoc_dom,pfam_DUF1605,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd	-	no_errors	DHX32	HGNC	ENSG00000089876	81	0	0.00	65	43	39.81	-	-	-
EPN1	0	genome.wustl.edu	37	19	56203361	56203361	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-11A-41W-A10F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29798513-2bb1-49f8-8cf3-c903d72072c3	371bff18-75e9-459a-9cf6-417ced089cfc	19	56203361	56203361	G	A	SNP	EPN1	ENST00000411543	human	ensembl	69_37n	+1	known	missense	c.1262	p.G421D	1.000	NULL	pfam_Epsin_dom_N,pfam_ANTH,superfamily_ENTH_VHS,smart_Epsin-like_N,smart_Ubiquitin-int_motif,pfscan_Epsin-like_N,pfscan_Ubiquitin-int_motif	-	no_errors	EPN1	HGNC	ENSG00000063245	10	0	0.00	7	9	56.25	-	-	-
ESX1	0	genome.wustl.edu	37	X	103494943	103494944	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-11A-41W-A10F-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29798513-2bb1-49f8-8cf3-c903d72072c3	371bff18-75e9-459a-9cf6-417ced089cfc	X	103494943	103494944	-	T	INS	ESX1	ENST00000372588	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1187_1186	p.V396fs	0.004:0.104	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,prints_POU,pfscan_Homeodomain	-	no_errors	ESX1	HGNC	ENSG00000123576	59	0	0.00	46	6	11.54	-	-	-
FAM217B	0	genome.wustl.edu	37	20	58520079	58520079	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29798513-2bb1-49f8-8cf3-c903d72072c3	362512ab-407f-47d5-9d9a-dd29647fd176	20	58520079	58520079	C	T	SNP	FAM217B	ENST00000358293	human	ensembl	69_37n	+1	known	missense	c.1081	p.H361Y	0.000	NULL	NULL	-	no_errors	FAM217B	HGNC	ENSG00000196227	111	0	0.00	219	28	11.34	-	-	-
FAM217B	0	genome.wustl.edu	37	20	58520079	58520079	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-11A-41W-A10F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29798513-2bb1-49f8-8cf3-c903d72072c3	371bff18-75e9-459a-9cf6-417ced089cfc	20	58520079	58520079	C	T	SNP	FAM217B	ENST00000358293	human	ensembl	69_37n	+1	known	missense	c.1081	p.H361Y	0.000	NULL	NULL	-	no_errors	FAM217B	HGNC	ENSG00000196227	116	0	0.00	219	28	11.34	-	-	-
FNDC1	0	genome.wustl.edu	37	6	159670105	159670105	+	Missense_Mutation	SNP	C	C	A			TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29798513-2bb1-49f8-8cf3-c903d72072c3	362512ab-407f-47d5-9d9a-dd29647fd176	6	159670105	159670105	C	A	SNP	FNDC1	ENST00000329629	human	ensembl	69_37n	+1	novel	missense	c.4411	p.H1471N	0.985	NULL	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	FNDC1	HGNC	ENSG00000164694	26	0	0.00	7	16	69.57	-	-	-
FNDC1	0	genome.wustl.edu	37	6	159670105	159670105	+	Missense_Mutation	SNP	C	C	A			TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-11A-41W-A10F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29798513-2bb1-49f8-8cf3-c903d72072c3	371bff18-75e9-459a-9cf6-417ced089cfc	6	159670105	159670105	C	A	SNP	FNDC1	ENST00000329629	human	ensembl	69_37n	+1	novel	missense	c.4411	p.H1471N	0.985	NULL	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	FNDC1	HGNC	ENSG00000164694	28	0	0.00	7	16	69.57	-	-	-
HDGFRP2	0	genome.wustl.edu	37	19	4499592	4499594	+	In_Frame_Del	DEL	AGT	AGT	-			TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-11A-41W-A10F-09	AGT	AGT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29798513-2bb1-49f8-8cf3-c903d72072c3	371bff18-75e9-459a-9cf6-417ced089cfc	19	4499592	4499594	AGT	-	DEL	HDGFRP2	ENST00000301284	human	ensembl	69_37n	+1	known	in_frame_del	c.1680_1682	p.V561in_frame_del	0.727:0.733:0.021	pfam_LEDGF	pfam_LEDGF,pfam_PWWP,smart_PWWP,pfscan_PWWP	-	no_errors	CTB-50L17.10	Clone_based_vega_gene	ENSG00000167674	15	0	0.00	10	8	44.44	-	-	-
HNRNPD	0	genome.wustl.edu	37	4	83277695	83277695	+	Missense_Mutation	SNP	T	T	C			TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29798513-2bb1-49f8-8cf3-c903d72072c3	362512ab-407f-47d5-9d9a-dd29647fd176	4	83277695	83277695	T	C	SNP	HNRNPD	ENST00000313899	human	ensembl	69_37n	-1	known	missense	c.995	p.Y332C	1.000	NULL	pfam_RRM_dom,pfam_CARG-binding_factor_N,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	HNRNPD	HGNC	ENSG00000138668	163	0	0.00	46	117	71.78	-	-	-
HNRNPD	0	genome.wustl.edu	37	4	83277695	83277695	+	Missense_Mutation	SNP	T	T	C			TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-11A-41W-A10F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29798513-2bb1-49f8-8cf3-c903d72072c3	371bff18-75e9-459a-9cf6-417ced089cfc	4	83277695	83277695	T	C	SNP	HNRNPD	ENST00000313899	human	ensembl	69_37n	-1	known	missense	c.995	p.Y332C	1.000	NULL	pfam_RRM_dom,pfam_CARG-binding_factor_N,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	HNRNPD	HGNC	ENSG00000138668	272	0	0.00	46	117	71.78	-	-	-
KIAA0195	0	genome.wustl.edu	37	17	73490997	73490997	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29798513-2bb1-49f8-8cf3-c903d72072c3	362512ab-407f-47d5-9d9a-dd29647fd176	17	73490997	73490997	C	-	DEL	KIAA0195	ENST00000314256	human	ensembl	69_37n	+1	known	frame_shift_del	c.2610	p.L871fs	1.000	NULL	pfam_ATPase_P-typ_cation-transptr_C	-	no_errors	KIAA0195	HGNC	ENSG00000177728	36	0	0.00	66	56	45.90	-	-	-
KIAA0195	0	genome.wustl.edu	37	17	73490997	73490997	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-11A-41W-A10F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29798513-2bb1-49f8-8cf3-c903d72072c3	371bff18-75e9-459a-9cf6-417ced089cfc	17	73490997	73490997	C	-	DEL	KIAA0195	ENST00000314256	human	ensembl	69_37n	+1	known	frame_shift_del	c.2610	p.L871fs	1.000	NULL	pfam_ATPase_P-typ_cation-transptr_C	-	no_errors	KIAA0195	HGNC	ENSG00000177728	48	0	0.00	66	56	45.90	-	-	-
MUC5B	0	genome.wustl.edu	37	11	1268931	1268931	+	Silent	SNP	A	A	C			TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-11A-41W-A10F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29798513-2bb1-49f8-8cf3-c903d72072c3	371bff18-75e9-459a-9cf6-417ced089cfc	11	1268931	1268931	A	C	SNP	MUC5B	ENST00000447027	human	ensembl	69_37n	+1	known	silent	c.10830	p.A3610	0.000	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC5B	HGNC	ENSG00000117983	9	0	0.00	1	4	80.00	-	-	-
MUC5B	0	genome.wustl.edu	37	11	1270250	1270250	+	Missense_Mutation	SNP	G	G	T			TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29798513-2bb1-49f8-8cf3-c903d72072c3	362512ab-407f-47d5-9d9a-dd29647fd176	11	1270250	1270250	G	T	SNP	MUC5B	ENST00000447027	human	ensembl	69_37n	+1	known	missense	c.12149	p.G4050V	0.000	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC5B	HGNC	ENSG00000117983	12	0	0.00	5	3	37.50	-	-	-
MYO10	0	genome.wustl.edu	37	5	16675085	16675085	+	Missense_Mutation	SNP	G	G	C			TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29798513-2bb1-49f8-8cf3-c903d72072c3	362512ab-407f-47d5-9d9a-dd29647fd176	5	16675085	16675085	G	C	SNP	MYO10	ENST00000513610	human	ensembl	69_37n	-1	known	missense	c.4841	p.T1614S	1.000	pfam_MyTH4_dom,smart_MyTH4_dom,pfscan_MyTH4_dom	pfam_Myosin_head_motor_dom,pfam_MyTH4_dom,pfam_Pleckstrin_homology,pfam_FERM_central,pfam_IQ_motif_EF-hand-BS,pfam_Ras-assoc,superfamily_FERM_central,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_Pleckstrin_homology,smart_MyTH4_dom,smart_Band_41_domain,pfscan_FERM_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_MyTH4_dom,pfscan_Pleckstrin_homology,prints_Myosin_head_motor_dom	-	no_errors	MYO10	HGNC	ENSG00000145555	120	0	0.00	147	23	13.53	-	-	-
MYO10	0	genome.wustl.edu	37	5	16675085	16675085	+	Missense_Mutation	SNP	G	G	C			TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-11A-41W-A10F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29798513-2bb1-49f8-8cf3-c903d72072c3	371bff18-75e9-459a-9cf6-417ced089cfc	5	16675085	16675085	G	C	SNP	MYO10	ENST00000513610	human	ensembl	69_37n	-1	known	missense	c.4841	p.T1614S	1.000	pfam_MyTH4_dom,smart_MyTH4_dom,pfscan_MyTH4_dom	pfam_Myosin_head_motor_dom,pfam_MyTH4_dom,pfam_Pleckstrin_homology,pfam_FERM_central,pfam_IQ_motif_EF-hand-BS,pfam_Ras-assoc,superfamily_FERM_central,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_Pleckstrin_homology,smart_MyTH4_dom,smart_Band_41_domain,pfscan_FERM_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_MyTH4_dom,pfscan_Pleckstrin_homology,prints_Myosin_head_motor_dom	-	no_errors	MYO10	HGNC	ENSG00000145555	129	0	0.00	147	23	13.53	-	-	-
OR2G6	0	genome.wustl.edu	37	1	248685620	248685620	+	Missense_Mutation	SNP	G	G	T			TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29798513-2bb1-49f8-8cf3-c903d72072c3	362512ab-407f-47d5-9d9a-dd29647fd176	1	248685620	248685620	G	T	SNP	OR2G6	ENST00000343414	human	ensembl	69_37n	+1	known	missense	c.673	p.V225L	0.001	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2G6	HGNC	ENSG00000188558	305	0	0.00	289	174	37.50	-	-	-
OR2G6	0	genome.wustl.edu	37	1	248685620	248685620	+	Missense_Mutation	SNP	G	G	T			TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-11A-41W-A10F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29798513-2bb1-49f8-8cf3-c903d72072c3	371bff18-75e9-459a-9cf6-417ced089cfc	1	248685620	248685620	G	T	SNP	OR2G6	ENST00000343414	human	ensembl	69_37n	+1	known	missense	c.673	p.V225L	0.001	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2G6	HGNC	ENSG00000188558	298	0	0.00	289	174	37.50	-	-	-
PCDHA1	0	genome.wustl.edu	37	5	140167742	140167742	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29798513-2bb1-49f8-8cf3-c903d72072c3	362512ab-407f-47d5-9d9a-dd29647fd176	5	140167742	140167742	C	T	SNP	PCDHA1	ENST00000504120	human	ensembl	69_37n	+1	known	missense	c.1867	p.R623C	0.997	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA1	HGNC	ENSG00000204970	19	0	0.00	59	20	25.32	-	-	-
PCDHA1	0	genome.wustl.edu	37	5	140167742	140167742	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-11A-41W-A10F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29798513-2bb1-49f8-8cf3-c903d72072c3	371bff18-75e9-459a-9cf6-417ced089cfc	5	140167742	140167742	C	T	SNP	PCDHA1	ENST00000504120	human	ensembl	69_37n	+1	known	missense	c.1867	p.R623C	0.997	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA1	HGNC	ENSG00000204970	40	0	0.00	59	20	25.32	-	-	-
PHF15	0	genome.wustl.edu	37	5	133896481	133896481	+	Missense_Mutation	SNP	A	A	G			TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29798513-2bb1-49f8-8cf3-c903d72072c3	362512ab-407f-47d5-9d9a-dd29647fd176	5	133896481	133896481	A	G	SNP	PHF15	ENST00000448712	human	ensembl	69_37n	+1	known	missense	c.566	p.E189G	1.000	pfam_Enhancer_polycomb-like_N	pfam_Enhancer_polycomb-like_N,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	PHF15	HGNC	ENSG00000043143	29	0	0.00	12	13	52.00	-	-	-
PHF15	0	genome.wustl.edu	37	5	133896481	133896481	+	Missense_Mutation	SNP	A	A	G			TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-11A-41W-A10F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29798513-2bb1-49f8-8cf3-c903d72072c3	371bff18-75e9-459a-9cf6-417ced089cfc	5	133896481	133896481	A	G	SNP	PHF15	ENST00000448712	human	ensembl	69_37n	+1	known	missense	c.566	p.E189G	1.000	pfam_Enhancer_polycomb-like_N	pfam_Enhancer_polycomb-like_N,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	PHF15	HGNC	ENSG00000043143	15	0	0.00	12	13	52.00	-	-	-
POP5	0	genome.wustl.edu	37	12	121018957	121018957	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29798513-2bb1-49f8-8cf3-c903d72072c3	362512ab-407f-47d5-9d9a-dd29647fd176	12	121018957	121018957	C	A	SNP	POP5	ENST00000357500	human	ensembl	69_37n	-1	known	nonsense	c.124	p.G42*	1.000	pfam_RNase_P/MRP_subunit,pirsf_RNase_P/MRP_POP5	pfam_RNase_P/MRP_subunit,pirsf_RNase_P/MRP_POP5	-	no_errors	POP5	HGNC	ENSG00000167272	39	0	0.00	41	21	33.87	-	-	-
POP5	0	genome.wustl.edu	37	12	121018957	121018957	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-11A-41W-A10F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29798513-2bb1-49f8-8cf3-c903d72072c3	371bff18-75e9-459a-9cf6-417ced089cfc	12	121018957	121018957	C	A	SNP	POP5	ENST00000357500	human	ensembl	69_37n	-1	known	nonsense	c.124	p.G42*	1.000	pfam_RNase_P/MRP_subunit,pirsf_RNase_P/MRP_POP5	pfam_RNase_P/MRP_subunit,pirsf_RNase_P/MRP_POP5	-	no_errors	POP5	HGNC	ENSG00000167272	49	0	0.00	41	21	33.87	-	-	-
PRUNE2	0	genome.wustl.edu	37	9	79324439	79324439	+	Missense_Mutation	SNP	A	A	T			TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29798513-2bb1-49f8-8cf3-c903d72072c3	362512ab-407f-47d5-9d9a-dd29647fd176	9	79324439	79324439	A	T	SNP	PRUNE2	ENST00000428286	human	ensembl	69_37n	-1	known	missense	c.1674	p.D558E	0.276	NULL	pfam_Bcl2-/adenovirus-E1B,pfam_CRAL-TRIO_dom,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom	-	no_errors	PRUNE2	HGNC	ENSG00000106772	226	0	0.00	73	184	71.60	-	-	-
PRUNE2	0	genome.wustl.edu	37	9	79324439	79324439	+	Missense_Mutation	SNP	A	A	T			TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-11A-41W-A10F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29798513-2bb1-49f8-8cf3-c903d72072c3	371bff18-75e9-459a-9cf6-417ced089cfc	9	79324439	79324439	A	T	SNP	PRUNE2	ENST00000428286	human	ensembl	69_37n	-1	known	missense	c.1674	p.D558E	0.276	NULL	pfam_Bcl2-/adenovirus-E1B,pfam_CRAL-TRIO_dom,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom	-	no_errors	PRUNE2	HGNC	ENSG00000106772	382	0	0.00	73	184	71.60	-	-	-
RHOXF2	0	genome.wustl.edu	37	X	119293081	119293081	+	Silent	SNP	C	C	T			TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29798513-2bb1-49f8-8cf3-c903d72072c3	362512ab-407f-47d5-9d9a-dd29647fd176	X	119293081	119293081	C	T	SNP	RHOXF2	ENST00000371388	human	ensembl	69_37n	+1	known	silent	c.240	p.G80	0.000	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	-	no_errors	RHOXF2	HGNC	ENSG00000131721	80	0	0.00	63	11	14.67	-	-	-
RHOXF2	0	genome.wustl.edu	37	X	119293081	119293081	+	Silent	SNP	C	C	T			TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-11A-41W-A10F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29798513-2bb1-49f8-8cf3-c903d72072c3	371bff18-75e9-459a-9cf6-417ced089cfc	X	119293081	119293081	C	T	SNP	RHOXF2	ENST00000371388	human	ensembl	69_37n	+1	known	silent	c.240	p.G80	0.000	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	-	no_errors	RHOXF2	HGNC	ENSG00000131721	99	0	0.00	63	11	14.67	-	-	-
RSC1A1	0	genome.wustl.edu	37	1	15987818	15987818	+	Silent	SNP	C	C	T			TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29798513-2bb1-49f8-8cf3-c903d72072c3	362512ab-407f-47d5-9d9a-dd29647fd176	1	15987818	15987818	C	T	SNP	RSC1A1	ENST00000345034	human	ensembl	69_37n	+1	known	silent	c.1455	p.H485	0.009	NULL	superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk	-	no_errors	RSC1A1	HGNC	ENSG00000215695	119	0	0.00	120	14	10.45	-	-	-
RSC1A1	0	genome.wustl.edu	37	1	15987818	15987818	+	Silent	SNP	C	C	T			TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-11A-41W-A10F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29798513-2bb1-49f8-8cf3-c903d72072c3	371bff18-75e9-459a-9cf6-417ced089cfc	1	15987818	15987818	C	T	SNP	RSC1A1	ENST00000345034	human	ensembl	69_37n	+1	known	silent	c.1455	p.H485	0.009	NULL	superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk	-	no_errors	RSC1A1	HGNC	ENSG00000215695	139	0	0.00	120	14	10.45	-	-	-
SDPR	0	genome.wustl.edu	37	2	192700907	192700907	+	Silent	SNP	C	C	T			TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29798513-2bb1-49f8-8cf3-c903d72072c3	362512ab-407f-47d5-9d9a-dd29647fd176	2	192700907	192700907	C	T	SNP	SDPR	ENST00000304141	human	ensembl	69_37n	-1	known	silent	c.1020	p.A340	0.000	NULL	NULL	-	no_errors	SDPR	HGNC	ENSG00000168497	223	0	0.00	164	78	32.23	-	-	-
SDPR	0	genome.wustl.edu	37	2	192700907	192700907	+	Silent	SNP	C	C	T			TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-11A-41W-A10F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29798513-2bb1-49f8-8cf3-c903d72072c3	371bff18-75e9-459a-9cf6-417ced089cfc	2	192700907	192700907	C	T	SNP	SDPR	ENST00000304141	human	ensembl	69_37n	-1	known	silent	c.1020	p.A340	0.000	NULL	NULL	-	no_errors	SDPR	HGNC	ENSG00000168497	167	0	0.00	164	78	32.23	-	-	-
SMARCA4	0	genome.wustl.edu	37	19	11144187	11144188	+	Frame_Shift_Del	DEL	GG	GG	-			TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-10A-01W-A071-09	GG	GG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29798513-2bb1-49f8-8cf3-c903d72072c3	362512ab-407f-47d5-9d9a-dd29647fd176	19	11144187	11144188	GG	-	DEL	SMARCA4	ENST00000358026	human	ensembl	69_37n	+1	known	frame_shift_del	c.3768_3769	p.D1257fs	1.000:1.000	NULL	pfam_SNF2_N,pfam_Bromodomain,pfam_BRK_domain,pfam_HSA,pfam_Helicase_C,pfam_Gln-Leu-Gln_QLQ,superfamily_Bromodomain,smart_Gln-Leu-Gln_QLQ,smart_HAS_subgr,smart_BRK_domain,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Bromodomain,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	SMARCA4	HGNC	ENSG00000127616	45	0	0.00	35	45	56.25	-	-	-
SMARCA4	0	genome.wustl.edu	37	19	11144187	11144188	+	Frame_Shift_Del	DEL	GG	GG	-			TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-11A-41W-A10F-09	GG	GG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29798513-2bb1-49f8-8cf3-c903d72072c3	371bff18-75e9-459a-9cf6-417ced089cfc	19	11144187	11144188	GG	-	DEL	SMARCA4	ENST00000358026	human	ensembl	69_37n	+1	known	frame_shift_del	c.3768_3769	p.D1257fs	1.000:1.000	NULL	pfam_SNF2_N,pfam_Bromodomain,pfam_BRK_domain,pfam_HSA,pfam_Helicase_C,pfam_Gln-Leu-Gln_QLQ,superfamily_Bromodomain,smart_Gln-Leu-Gln_QLQ,smart_HAS_subgr,smart_BRK_domain,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Bromodomain,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	SMARCA4	HGNC	ENSG00000127616	20	0	0.00	35	45	56.25	-	-	-
SMARCA4	0	genome.wustl.edu	37	19	11144189	11144190	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29798513-2bb1-49f8-8cf3-c903d72072c3	362512ab-407f-47d5-9d9a-dd29647fd176	19	11144189	11144190	-	C	INS	SMARCA4	ENST00000358026	human	ensembl	69_37n	+1	known	frame_shift_ins	c.3770_3771	p.E1258fs	1.000:0.906	NULL	pfam_SNF2_N,pfam_Bromodomain,pfam_BRK_domain,pfam_HSA,pfam_Helicase_C,pfam_Gln-Leu-Gln_QLQ,superfamily_Bromodomain,smart_Gln-Leu-Gln_QLQ,smart_HAS_subgr,smart_BRK_domain,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Bromodomain,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	SMARCA4	HGNC	ENSG00000127616	44	0	0.00	37	45	54.88	-	-	-
SMARCA4	0	genome.wustl.edu	37	19	11144189	11144190	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-11A-41W-A10F-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29798513-2bb1-49f8-8cf3-c903d72072c3	371bff18-75e9-459a-9cf6-417ced089cfc	19	11144189	11144190	-	C	INS	SMARCA4	ENST00000358026	human	ensembl	69_37n	+1	known	frame_shift_ins	c.3770_3771	p.E1258fs	1.000:0.906	NULL	pfam_SNF2_N,pfam_Bromodomain,pfam_BRK_domain,pfam_HSA,pfam_Helicase_C,pfam_Gln-Leu-Gln_QLQ,superfamily_Bromodomain,smart_Gln-Leu-Gln_QLQ,smart_HAS_subgr,smart_BRK_domain,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Bromodomain,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	SMARCA4	HGNC	ENSG00000127616	22	0	0.00	37	45	54.88	-	-	-
SMO	0	genome.wustl.edu	37	7	128852230	128852230	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29798513-2bb1-49f8-8cf3-c903d72072c3	362512ab-407f-47d5-9d9a-dd29647fd176	7	128852230	128852230	C	T	SNP	SMO	ENST00000249373	human	ensembl	69_37n	+1	known	missense	c.2302	p.P768S	0.996	NULL	pfam_Frizzled,pfam_Frizzled_dom,pfam_GPCR_2_secretin-like,superfamily_Frizzled_dom,smart_Frizzled_dom,pfscan_Frizzled_dom,pfscan_GPCR_2-like,prints_Frizzled	-	no_errors	SMO	HGNC	ENSG00000128602	58	0	0.00	71	18	20.00	-	-	-
SMO	0	genome.wustl.edu	37	7	128852230	128852230	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-11A-41W-A10F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29798513-2bb1-49f8-8cf3-c903d72072c3	371bff18-75e9-459a-9cf6-417ced089cfc	7	128852230	128852230	C	T	SNP	SMO	ENST00000249373	human	ensembl	69_37n	+1	known	missense	c.2302	p.P768S	0.996	NULL	pfam_Frizzled,pfam_Frizzled_dom,pfam_GPCR_2_secretin-like,superfamily_Frizzled_dom,smart_Frizzled_dom,pfscan_Frizzled_dom,pfscan_GPCR_2-like,prints_Frizzled	-	no_errors	SMO	HGNC	ENSG00000128602	49	0	0.00	71	18	20.00	-	-	-
SPEN	0	genome.wustl.edu	37	1	16265833	16265834	+	Frame_Shift_Del	DEL	GA	GA	-			TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-10A-01W-A071-09	GA	GA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29798513-2bb1-49f8-8cf3-c903d72072c3	362512ab-407f-47d5-9d9a-dd29647fd176	1	16265833	16265834	GA	-	DEL	SPEN	ENST00000375759	human	ensembl	69_37n	+1	known	frame_shift_del	c.10906_10907	p.H3638fs	0.999:1.000	superfamily_SPOC-like,pfscan_SPOC_met	pfam_RRM_dom,pfam_SPOC_C,superfamily_SPOC-like,smart_RRM_dom,pfscan_SPOC_met,pfscan_RRM_dom	-	no_errors	SPEN	HGNC	ENSG00000065526	136	0	0.00	75	13	14.77	-	-	-
SPEN	0	genome.wustl.edu	37	1	16265833	16265834	+	Frame_Shift_Del	DEL	GA	GA	-			TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-11A-41W-A10F-09	GA	GA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29798513-2bb1-49f8-8cf3-c903d72072c3	371bff18-75e9-459a-9cf6-417ced089cfc	1	16265833	16265834	GA	-	DEL	SPEN	ENST00000375759	human	ensembl	69_37n	+1	known	frame_shift_del	c.10906_10907	p.H3638fs	0.999:1.000	superfamily_SPOC-like,pfscan_SPOC_met	pfam_RRM_dom,pfam_SPOC_C,superfamily_SPOC-like,smart_RRM_dom,pfscan_SPOC_met,pfscan_RRM_dom	-	no_errors	SPEN	HGNC	ENSG00000065526	160	0	0.00	75	13	14.77	-	-	-
SRGAP1	0	genome.wustl.edu	37	12	64474111	64474111	+	Missense_Mutation	SNP	C	C	A			TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29798513-2bb1-49f8-8cf3-c903d72072c3	362512ab-407f-47d5-9d9a-dd29647fd176	12	64474111	64474111	C	A	SNP	SRGAP1	ENST00000355086	human	ensembl	69_37n	+1	known	missense	c.1369	p.Q457K	1.000	NULL	pfam_RhoGAP_dom,pfam_FCH,pfam_SH3_domain,pfam_SH3_2,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,superfamily_Fuc/Ara_isomerase_C,smart_FCH,smart_RhoGAP_dom,smart_SH3_domain,pfscan_FCH,pfscan_SH3_domain,pfscan_RhoGAP_dom	-	no_errors	SRGAP1	HGNC	ENSG00000196935	105	0	0.00	102	69	40.35	-	-	-
SRGAP1	0	genome.wustl.edu	37	12	64474111	64474111	+	Missense_Mutation	SNP	C	C	A			TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-11A-41W-A10F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29798513-2bb1-49f8-8cf3-c903d72072c3	371bff18-75e9-459a-9cf6-417ced089cfc	12	64474111	64474111	C	A	SNP	SRGAP1	ENST00000355086	human	ensembl	69_37n	+1	known	missense	c.1369	p.Q457K	1.000	NULL	pfam_RhoGAP_dom,pfam_FCH,pfam_SH3_domain,pfam_SH3_2,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,superfamily_Fuc/Ara_isomerase_C,smart_FCH,smart_RhoGAP_dom,smart_SH3_domain,pfscan_FCH,pfscan_SH3_domain,pfscan_RhoGAP_dom	-	no_errors	SRGAP1	HGNC	ENSG00000196935	161	0	0.00	102	69	40.35	-	-	-
ST14	0	genome.wustl.edu	37	11	130078396	130078396	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29798513-2bb1-49f8-8cf3-c903d72072c3	362512ab-407f-47d5-9d9a-dd29647fd176	11	130078396	130078396	C	T	SNP	ST14	ENST00000278742	human	ensembl	69_37n	+1	known	missense	c.2086	p.R696C	1.000	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pirsf_Peptidase_S1A_matripase,pfscan_Peptidase_S1_S6	pfam_Peptidase_S1_S6,pfam_LDrepeatLR_classA_rpt,pfam_CUB,pfam_SEA,superfamily_Pept_cys/ser_Trypsin-like,superfamily_CUB,superfamily_LDrepeatLR_classA_rpt,smart_CUB,smart_LDrepeatLR_classA_rpt,smart_Peptidase_S1_S6,pirsf_Peptidase_S1A_matripase,pfscan_CUB,pfscan_LDrepeatLR_classA_rpt,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	ST14	HGNC	ENSG00000149418	32	0	0.00	24	5	17.24	-	-	-
ST14	0	genome.wustl.edu	37	11	130078396	130078396	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-11A-41W-A10F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29798513-2bb1-49f8-8cf3-c903d72072c3	371bff18-75e9-459a-9cf6-417ced089cfc	11	130078396	130078396	C	T	SNP	ST14	ENST00000278742	human	ensembl	69_37n	+1	known	missense	c.2086	p.R696C	1.000	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pirsf_Peptidase_S1A_matripase,pfscan_Peptidase_S1_S6	pfam_Peptidase_S1_S6,pfam_LDrepeatLR_classA_rpt,pfam_CUB,pfam_SEA,superfamily_Pept_cys/ser_Trypsin-like,superfamily_CUB,superfamily_LDrepeatLR_classA_rpt,smart_CUB,smart_LDrepeatLR_classA_rpt,smart_Peptidase_S1_S6,pirsf_Peptidase_S1A_matripase,pfscan_CUB,pfscan_LDrepeatLR_classA_rpt,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	ST14	HGNC	ENSG00000149418	32	0	0.00	24	5	17.24	-	-	-
STAT2	0	genome.wustl.edu	37	12	56750353	56750353	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29798513-2bb1-49f8-8cf3-c903d72072c3	362512ab-407f-47d5-9d9a-dd29647fd176	12	56750353	56750353	C	T	SNP	STAT2	ENST00000314128	human	ensembl	69_37n	-1	known	missense	c.3	p.M1I	1.000	superfamily_STAT_TF_prot_interaction	pfam_STAT_TF_DNA-bd,pfam_STAT_TF_alpha,pfam_STAT_TF_prot_interaction,pfam_STAT2_C,pfam_SH2,superfamily_p53-like_TF_DNA-bd,superfamily_STAT_TF_coiled-coil,superfamily_STAT_TF_prot_interaction,smart_STAT_TF_prot_interaction,smart_SH2,pfscan_SH2	-	no_errors	STAT2	HGNC	ENSG00000170581	130	0	0.00	192	32	14.29	-	-	-
STAT2	0	genome.wustl.edu	37	12	56750353	56750353	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-11A-41W-A10F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29798513-2bb1-49f8-8cf3-c903d72072c3	371bff18-75e9-459a-9cf6-417ced089cfc	12	56750353	56750353	C	T	SNP	STAT2	ENST00000314128	human	ensembl	69_37n	-1	known	missense	c.3	p.M1I	1.000	superfamily_STAT_TF_prot_interaction	pfam_STAT_TF_DNA-bd,pfam_STAT_TF_alpha,pfam_STAT_TF_prot_interaction,pfam_STAT2_C,pfam_SH2,superfamily_p53-like_TF_DNA-bd,superfamily_STAT_TF_coiled-coil,superfamily_STAT_TF_prot_interaction,smart_STAT_TF_prot_interaction,smart_SH2,pfscan_SH2	-	no_errors	STAT2	HGNC	ENSG00000170581	132	0	0.00	192	32	14.29	-	-	-
STAT5B	0	genome.wustl.edu	37	17	40371806	40371806	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29798513-2bb1-49f8-8cf3-c903d72072c3	362512ab-407f-47d5-9d9a-dd29647fd176	17	40371806	40371806	G	A	SNP	STAT5B	ENST00000293328	human	ensembl	69_37n	-1	known	missense	c.605	p.T202M	1.000	pfam_STAT_TF_alpha,superfamily_STAT_TF_coiled-coil	pfam_STAT_TF_DNA-bd,pfam_STAT_TF_alpha,pfam_STAT_TF_prot_interaction,pfam_SH2,superfamily_p53-like_TF_DNA-bd,superfamily_STAT_TF_coiled-coil,superfamily_STAT_TF_prot_interaction,smart_STAT_TF_prot_interaction,smart_SH2,pfscan_SH2	-	no_errors	STAT5B	HGNC	ENSG00000173757	27	0	0.00	17	15	46.88	-	-	-
STAT5B	0	genome.wustl.edu	37	17	40371806	40371806	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-11A-41W-A10F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29798513-2bb1-49f8-8cf3-c903d72072c3	371bff18-75e9-459a-9cf6-417ced089cfc	17	40371806	40371806	G	A	SNP	STAT5B	ENST00000293328	human	ensembl	69_37n	-1	known	missense	c.605	p.T202M	1.000	pfam_STAT_TF_alpha,superfamily_STAT_TF_coiled-coil	pfam_STAT_TF_DNA-bd,pfam_STAT_TF_alpha,pfam_STAT_TF_prot_interaction,pfam_SH2,superfamily_p53-like_TF_DNA-bd,superfamily_STAT_TF_coiled-coil,superfamily_STAT_TF_prot_interaction,smart_STAT_TF_prot_interaction,smart_SH2,pfscan_SH2	-	no_errors	STAT5B	HGNC	ENSG00000173757	26	0	0.00	17	15	46.88	-	-	-
STAT6	0	genome.wustl.edu	37	12	57499326	57499326	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29798513-2bb1-49f8-8cf3-c903d72072c3	362512ab-407f-47d5-9d9a-dd29647fd176	12	57499326	57499326	C	T	SNP	STAT6	ENST00000300134	human	ensembl	69_37n	-1	known	missense	c.737	p.G246D	0.993	pfam_STAT_TF_alpha,superfamily_STAT_TF_coiled-coil	pfam_STAT_TF_DNA-bd,pfam_STAT_TF_alpha,pfam_STAT_TF_prot_interaction,pfam_SH2,superfamily_p53-like_TF_DNA-bd,superfamily_STAT_TF_coiled-coil,superfamily_STAT_TF_prot_interaction,smart_STAT_TF_prot_interaction,smart_SH2,pfscan_SH2	-	no_errors	STAT6	HGNC	ENSG00000166888	26	0	0.00	51	8	13.56	-	-	-
STAT6	0	genome.wustl.edu	37	12	57499326	57499326	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-11A-41W-A10F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29798513-2bb1-49f8-8cf3-c903d72072c3	371bff18-75e9-459a-9cf6-417ced089cfc	12	57499326	57499326	C	T	SNP	STAT6	ENST00000300134	human	ensembl	69_37n	-1	known	missense	c.737	p.G246D	0.993	pfam_STAT_TF_alpha,superfamily_STAT_TF_coiled-coil	pfam_STAT_TF_DNA-bd,pfam_STAT_TF_alpha,pfam_STAT_TF_prot_interaction,pfam_SH2,superfamily_p53-like_TF_DNA-bd,superfamily_STAT_TF_coiled-coil,superfamily_STAT_TF_prot_interaction,smart_STAT_TF_prot_interaction,smart_SH2,pfscan_SH2	-	no_errors	STAT6	HGNC	ENSG00000166888	33	0	0.00	51	8	13.56	-	-	-
SYNE1	0	genome.wustl.edu	37	6	152652194	152652194	+	Silent	SNP	G	G	A			TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29798513-2bb1-49f8-8cf3-c903d72072c3	362512ab-407f-47d5-9d9a-dd29647fd176	6	152652194	152652194	G	A	SNP	SYNE1	ENST00000265368	human	ensembl	69_37n	-1	known	silent	c.13626	p.V4542	0.970	superfamily_Calpain_domain_III,superfamily_ABC_transptrTM_dom_typ1,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC_transptrTM_dom_typ1,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE1	HGNC	ENSG00000131018	308	0	0.00	362	46	11.25	-	-	-
SYNE1	0	genome.wustl.edu	37	6	152652194	152652194	+	Silent	SNP	G	G	A			TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-11A-41W-A10F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29798513-2bb1-49f8-8cf3-c903d72072c3	371bff18-75e9-459a-9cf6-417ced089cfc	6	152652194	152652194	G	A	SNP	SYNE1	ENST00000265368	human	ensembl	69_37n	-1	known	silent	c.13626	p.V4542	0.970	superfamily_Calpain_domain_III,superfamily_ABC_transptrTM_dom_typ1,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC_transptrTM_dom_typ1,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE1	HGNC	ENSG00000131018	314	0	0.00	362	46	11.25	-	-	-
USH2A	0	genome.wustl.edu	37	1	215955505	215955505	+	Missense_Mutation	SNP	C	C	A			TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29798513-2bb1-49f8-8cf3-c903d72072c3	362512ab-407f-47d5-9d9a-dd29647fd176	1	215955505	215955505	C	A	SNP	USH2A	ENST00000366943	human	ensembl	69_37n	-1	known	missense	c.10619	p.G3540V	1.000	superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_EGF_laminin,pfam_Laminin_G,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_LamG-like,smart_Laminin_N,smart_EGF_laminin,smart_Fibronectin_type3,smart_Laminin_G,pfscan_EGF_laminin,pfscan_Fibronectin_type3,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	USH2A	HGNC	ENSG00000042781	118	0	0.00	145	111	43.36	-	-	-
USH2A	0	genome.wustl.edu	37	1	215955505	215955505	+	Missense_Mutation	SNP	C	C	A			TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-11A-41W-A10F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29798513-2bb1-49f8-8cf3-c903d72072c3	371bff18-75e9-459a-9cf6-417ced089cfc	1	215955505	215955505	C	A	SNP	USH2A	ENST00000366943	human	ensembl	69_37n	-1	known	missense	c.10619	p.G3540V	1.000	superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_EGF_laminin,pfam_Laminin_G,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_LamG-like,smart_Laminin_N,smart_EGF_laminin,smart_Fibronectin_type3,smart_Laminin_G,pfscan_EGF_laminin,pfscan_Fibronectin_type3,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	USH2A	HGNC	ENSG00000042781	191	0	0.00	145	111	43.36	-	-	-
ZFP112	0	genome.wustl.edu	37	19	44834085	44834085	+	Silent	SNP	C	C	T			TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29798513-2bb1-49f8-8cf3-c903d72072c3	362512ab-407f-47d5-9d9a-dd29647fd176	19	44834085	44834085	C	T	SNP	ZFP112	ENST00000536500	human	ensembl	69_37n	-1	known	silent	c.294	p.R98	0.875	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZFP112	HGNC	ENSG00000062370	42	0	0.00	59	45	43.27	-	-	-
ZFP112	0	genome.wustl.edu	37	19	44834085	44834085	+	Silent	SNP	C	C	T			TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-11A-41W-A10F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29798513-2bb1-49f8-8cf3-c903d72072c3	371bff18-75e9-459a-9cf6-417ced089cfc	19	44834085	44834085	C	T	SNP	ZFP112	ENST00000536500	human	ensembl	69_37n	-1	known	silent	c.294	p.R98	0.875	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZFP112	HGNC	ENSG00000062370	82	0	0.00	59	45	43.27	-	-	-
ZNF527	0	genome.wustl.edu	37	19	37879753	37879753	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29798513-2bb1-49f8-8cf3-c903d72072c3	362512ab-407f-47d5-9d9a-dd29647fd176	19	37879753	37879753	C	T	SNP	ZNF527	ENST00000436120	human	ensembl	69_37n	+1	known	missense	c.802	p.H268Y	0.948	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF527	HGNC	ENSG00000189164	397	0	0.00	398	260	39.51	-	-	-
ZNF527	0	genome.wustl.edu	37	19	37879753	37879753	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-11A-41W-A10F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29798513-2bb1-49f8-8cf3-c903d72072c3	371bff18-75e9-459a-9cf6-417ced089cfc	19	37879753	37879753	C	T	SNP	ZNF527	ENST00000436120	human	ensembl	69_37n	+1	known	missense	c.802	p.H268Y	0.948	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF527	HGNC	ENSG00000189164	390	1	0.26	398	260	39.51	-	-	-
ZNF672	0	genome.wustl.edu	37	1	249141669	249141669	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29798513-2bb1-49f8-8cf3-c903d72072c3	362512ab-407f-47d5-9d9a-dd29647fd176	1	249141669	249141669	G	A	SNP	ZNF672	ENST00000306562	human	ensembl	69_37n	+1	known	missense	c.196	p.G66S	0.662	pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF672	HGNC	ENSG00000171161	11	0	0.00	17	11	39.29	-	-	-
ZNF672	0	genome.wustl.edu	37	1	249141669	249141669	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-11A-41W-A10F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	29798513-2bb1-49f8-8cf3-c903d72072c3	371bff18-75e9-459a-9cf6-417ced089cfc	1	249141669	249141669	G	A	SNP	ZNF672	ENST00000306562	human	ensembl	69_37n	+1	known	missense	c.196	p.G66S	0.662	pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF672	HGNC	ENSG00000171161	10	0	0.00	17	11	39.29	-	-	-
