Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
ANKRD26P1	0	genome.wustl.edu	37	16	46597935	46597935	+	RNA	SNP	G	G	A			TCGA-BH-A0DO-01B-11D-A12B-09	TCGA-BH-A0DO-11A-22D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	14649437-79a6-40bd-87b1-a278bfb2dcda	d5eab3e3-4a3c-4820-807d-a837c2d054f1	16	46597935	46597935	G	A	SNP	ANKRD26P1	ENST00000566201	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.816	-	-	-	no_errors	ANKRD26P1	HGNC	ENSG00000261239	43	0	0.00	36	6	14.29	-	-	-
CACNA1D	0	genome.wustl.edu	37	3	53779689	53779689	+	Silent	SNP	C	C	T			TCGA-BH-A0DO-01B-11D-A12B-09	TCGA-BH-A0DO-11A-22D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	14649437-79a6-40bd-87b1-a278bfb2dcda	d5eab3e3-4a3c-4820-807d-a837c2d054f1	3	53779689	53779689	C	T	SNP	CACNA1D	ENST00000288139	human	ensembl	69_37n	+1	known	silent	c.3105	p.I1035	0.890	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCCAlpha1,prints_VDCC_L_a1su,prints_LVDCC_a1dsu	-	no_errors	CACNA1D	HGNC	ENSG00000157388	297	0	0.00	261	69	20.91	-	-	-
CSMD1	0	genome.wustl.edu	37	8	4494943	4494943	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A0DO-01B-11D-A12B-09	TCGA-BH-A0DO-11A-22D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	14649437-79a6-40bd-87b1-a278bfb2dcda	d5eab3e3-4a3c-4820-807d-a837c2d054f1	8	4494943	4494943	G	A	SNP	CSMD1	ENST00000520002	human	ensembl	69_37n	-1	known	missense	c.223	p.H75Y	0.932	pfam_CUB,superfamily_CUB,smart_CUB,pfscan_CUB	pfam_CUB,pfam_Sushi_SCR_CCP,superfamily_CUB,superfamily_Complement_control_module,smart_CUB,smart_Sushi_SCR_CCP,pfscan_CUB,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD1	HGNC	ENSG00000183117	166	1	0.60	129	34	20.86	-	-	-
FMO3	0	genome.wustl.edu	37	1	171077313	171077313	+	Missense_Mutation	SNP	G	G	T			TCGA-BH-A0DO-01B-11D-A12B-09	TCGA-BH-A0DO-11A-22D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	14649437-79a6-40bd-87b1-a278bfb2dcda	d5eab3e3-4a3c-4820-807d-a837c2d054f1	1	171077313	171077313	G	T	SNP	FMO3	ENST00000367755	human	ensembl	69_37n	+1	known	missense	c.578	p.G193V	1.000	pfam_Flavin_mOase-like,pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pirsf_DiMe-aniline_mOase	pfam_Flavin_mOase-like,pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pirsf_DiMe-aniline_mOase,prints_Flavin_mOase,prints_Flavin_mOase_3,prints_Flavin_mOase_1,prints_Flavin_mOase_2	-	no_errors	FMO3	HGNC	ENSG00000007933	361	0	0.00	433	75	14.73	-	-	-
HIVEP2	0	genome.wustl.edu	37	6	143074830	143074830	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BH-A0DO-01B-11D-A12B-09	TCGA-BH-A0DO-11A-22D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	14649437-79a6-40bd-87b1-a278bfb2dcda	d5eab3e3-4a3c-4820-807d-a837c2d054f1	6	143074830	143074830	G	-	DEL	HIVEP2	ENST00000012134	human	ensembl	69_37n	-1	known	frame_shift_del	c.6755	p.T2252fs	0.878	NULL	pfam_Znf_C2H2,pfam_Znf_C2H2_jaz,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	HIVEP2	HGNC	ENSG00000010818	206	0	0.00	174	32	15.31	-	-	-
IGHG1	0	genome.wustl.edu	37	14	106208558	106208558	+	Silent	SNP	T	T	C			TCGA-BH-A0DO-01B-11D-A12B-09	TCGA-BH-A0DO-11A-22D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	14649437-79a6-40bd-87b1-a278bfb2dcda	d5eab3e3-4a3c-4820-807d-a837c2d054f1	14	106208558	106208558	T	C	SNP	IGHG1	ENST00000390548	human	ensembl	69_37n	-1	known	silent	c.342	p.A114	0.000	NULL	pfam_Ig_C1-set,pfam_CD80_C2-set,smart_Ig_C1-set,pfscan_Ig-like	-	no_start_codon	IGHG1	HGNC	ENSG00000211896	234	0	0.00	222	43	16.17	-	-	-
MAPK8IP3	0	genome.wustl.edu	37	16	1793389	1793389	+	Missense_Mutation	SNP	G	G	C			TCGA-BH-A0DO-01B-11D-A12B-09	TCGA-BH-A0DO-11A-22D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	14649437-79a6-40bd-87b1-a278bfb2dcda	d5eab3e3-4a3c-4820-807d-a837c2d054f1	16	1793389	1793389	G	C	SNP	MAPK8IP3	ENST00000250894	human	ensembl	69_37n	+1	known	missense	c.656	p.R219P	1.000	NULL	pfam_JNK/Rab-associated_protein-1_N,superfamily_WD40_repeat_dom	-	no_errors	MAPK8IP3	HGNC	ENSG00000138834	46	0	0.00	51	6	10.53	-	-	-
MMP12	0	genome.wustl.edu	37	11	102743804	102743804	+	RNA	DEL	T	T	-			TCGA-BH-A0DO-01B-11D-A12B-09	TCGA-BH-A0DO-11A-22D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	14649437-79a6-40bd-87b1-a278bfb2dcda	d5eab3e3-4a3c-4820-807d-a837c2d054f1	11	102743804	102743804	T	-	DEL	MMP12	ENST00000326227	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MMP12	HGNC	ENSG00000110347	89	0	0.00	89	17	15.60	-	-	-
MX1	0	genome.wustl.edu	37	21	42823096	42823096	+	Missense_Mutation	SNP	A	A	G			TCGA-BH-A0DO-01B-11D-A12B-09	TCGA-BH-A0DO-11A-22D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	14649437-79a6-40bd-87b1-a278bfb2dcda	d5eab3e3-4a3c-4820-807d-a837c2d054f1	21	42823096	42823096	A	G	SNP	MX1	ENST00000398598	human	ensembl	69_37n	+1	known	missense	c.1435	p.M479V	0.271	pfam_Dynamin_central	pfam_Dynamin_central,pfam_Dynamin_GTPase,pfam_GED,smart_Dynamin_GTPase,smart_GED,prints_Dynamin	-	no_errors	MX1	HGNC	ENSG00000157601	401	1	0.25	340	80	19.05	-	-	-
PASK	0	genome.wustl.edu	37	2	242051776	242051776	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A0DO-01B-11D-A12B-09	TCGA-BH-A0DO-11A-22D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	14649437-79a6-40bd-87b1-a278bfb2dcda	d5eab3e3-4a3c-4820-807d-a837c2d054f1	2	242051776	242051776	C	T	SNP	PASK	ENST00000358649	human	ensembl	69_37n	-1	known	missense	c.3433	p.E1145K	0.956	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PAS_fold,superfamily_Kinase-like_dom,smart_PAS,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_PAS,pfscan_Prot_kinase_cat_dom,tigrfam_PAS	-	no_errors	PASK	HGNC	ENSG00000115687	149	1	0.67	102	29	22.14	-	-	-
PIK3CA	0	genome.wustl.edu	37	3	178952074	178952074	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A0DO-01B-11D-A12B-09	TCGA-BH-A0DO-11A-22D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	14649437-79a6-40bd-87b1-a278bfb2dcda	d5eab3e3-4a3c-4820-807d-a837c2d054f1	3	178952074	178952074	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	+1	known	missense	c.3129	p.M1043I	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	183	0	0.00	198	43	17.77	-	-	-
PTCHD1	0	genome.wustl.edu	37	X	23411483	23411483	+	Silent	SNP	C	C	T			TCGA-BH-A0DO-01B-11D-A12B-09	TCGA-BH-A0DO-11A-22D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	14649437-79a6-40bd-87b1-a278bfb2dcda	d5eab3e3-4a3c-4820-807d-a837c2d054f1	X	23411483	23411483	C	T	SNP	PTCHD1	ENST00000379361	human	ensembl	69_37n	+1	known	silent	c.1848	p.S616	1.000	pfam_Patched	pfam_Patched,pfscan_SSD	-	no_errors	PTCHD1	HGNC	ENSG00000165186	81	0	0.00	67	11	14.10	-	-	-
S100P	0	genome.wustl.edu	37	4	6698746	6698746	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BH-A0DO-01B-11D-A12B-09	TCGA-BH-A0DO-11A-22D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	14649437-79a6-40bd-87b1-a278bfb2dcda	d5eab3e3-4a3c-4820-807d-a837c2d054f1	4	6698746	6698746	T	-	DEL	S100P	ENST00000296370	human	ensembl	69_37n	+1	known	frame_shift_del	c.265	p.F89fs	0.056	NULL	pfam_S100_Ca-bd_sub,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	S100P	HGNC	ENSG00000163993	141	0	0.00	148	30	16.76	-	-	-
SETX	0	genome.wustl.edu	37	9	135153491	135153491	+	Missense_Mutation	SNP	T	T	G			TCGA-BH-A0DO-01B-11D-A12B-09	TCGA-BH-A0DO-11A-22D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	14649437-79a6-40bd-87b1-a278bfb2dcda	d5eab3e3-4a3c-4820-807d-a837c2d054f1	9	135153491	135153491	T	G	SNP	SETX	ENST00000372169	human	ensembl	69_37n	-1	known	missense	c.6808	p.N2270H	0.093	NULL	NULL	-	no_errors	SETX	HGNC	ENSG00000107290	227	0	0.00	167	48	22.33	-	-	-
SIGLEC6	0	genome.wustl.edu	37	19	52033695	52033695	+	Silent	SNP	G	G	A			TCGA-BH-A0DO-01B-11D-A12B-09	TCGA-BH-A0DO-11A-22D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	14649437-79a6-40bd-87b1-a278bfb2dcda	d5eab3e3-4a3c-4820-807d-a837c2d054f1	19	52033695	52033695	G	A	SNP	SIGLEC6	ENST00000425629	human	ensembl	69_37n	-1	known	silent	c.750	p.S250	0.069	pfscan_Ig-like	pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	SIGLEC6	HGNC	ENSG00000105492	121	0	0.00	120	21	14.89	-	-	-
SLITRK1	0	genome.wustl.edu	37	13	84454919	84454919	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A0DO-01B-11D-A12B-09	TCGA-BH-A0DO-11A-22D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	14649437-79a6-40bd-87b1-a278bfb2dcda	d5eab3e3-4a3c-4820-807d-a837c2d054f1	13	84454919	84454919	C	T	SNP	SLITRK1	ENST00000377084	human	ensembl	69_37n	-1	known	missense	c.724	p.E242K	1.000	smart_Cys-rich_flank_reg_C	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	SLITRK1	HGNC	ENSG00000178235	149	0	0.00	138	36	20.69	-	-	-
STAM2	0	genome.wustl.edu	37	2	152988657	152988657	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A0DO-01B-11D-A12B-09	TCGA-BH-A0DO-11A-22D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	14649437-79a6-40bd-87b1-a278bfb2dcda	d5eab3e3-4a3c-4820-807d-a837c2d054f1	2	152988657	152988657	C	T	SNP	STAM2	ENST00000263904	human	ensembl	69_37n	-1	known	missense	c.996	p.M332I	1.000	NULL	pfam_VHS,pfam_SH3_domain,pfam_SH3_2,pfam_Ubiquitin-int_motif,superfamily_ENTH_VHS,superfamily_SH3_domain,smart_VHS_subgr,smart_Ubiquitin-int_motif,smart_SH3_domain,pfscan_SH3_domain,pfscan_Ubiquitin-int_motif,pfscan_VHS,prints_SH3_domain,prints_p67phox	-	no_errors	STAM2	HGNC	ENSG00000115145	362	1	0.27	307	70	18.52	-	-	-
TCHH	0	genome.wustl.edu	37	1	152079924	152079924	+	Silent	SNP	G	G	A			TCGA-BH-A0DO-01B-11D-A12B-09	TCGA-BH-A0DO-11A-22D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	14649437-79a6-40bd-87b1-a278bfb2dcda	d5eab3e3-4a3c-4820-807d-a837c2d054f1	1	152079924	152079924	G	A	SNP	TCHH	ENST00000368804	human	ensembl	69_37n	-1	known	silent	c.5769	p.V1923	0.000	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2	-	no_errors	TCHH	HGNC	ENSG00000159450	200	0	0.00	231	46	16.49	-	-	-
TP53I13	0	genome.wustl.edu	37	17	27899472	27899472	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BH-A0DO-01B-11D-A12B-09	TCGA-BH-A0DO-11A-22D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	14649437-79a6-40bd-87b1-a278bfb2dcda	d5eab3e3-4a3c-4820-807d-a837c2d054f1	17	27899472	27899472	G	-	DEL	TP53I13	ENST00000301057	human	ensembl	69_37n	+1	known	frame_shift_del	c.826	p.G276fs	0.748	NULL	NULL	-	no_errors	TP53I13	HGNC	ENSG00000167543	11	0	0.00	4	2	33.33	-	-	-
TTN	0	genome.wustl.edu	37	2	179449667	179449667	+	Silent	SNP	A	A	G			TCGA-BH-A0DO-01B-11D-A12B-09	TCGA-BH-A0DO-11A-22D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	14649437-79a6-40bd-87b1-a278bfb2dcda	d5eab3e3-4a3c-4820-807d-a837c2d054f1	2	179449667	179449667	A	G	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	silent	c.56997	p.F18999	0.975	pfam_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_Fibronectin_type3,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	47	0	0.00	34	4	10.53	-	-	-
WDR87	0	genome.wustl.edu	37	19	38380122	38380122	+	Silent	SNP	G	G	A			TCGA-BH-A0DO-01B-11D-A12B-09	TCGA-BH-A0DO-11A-22D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	14649437-79a6-40bd-87b1-a278bfb2dcda	d5eab3e3-4a3c-4820-807d-a837c2d054f1	19	38380122	38380122	G	A	SNP	WDR87	ENST00000447313	human	ensembl	69_37n	-1	known	silent	c.4189	p.L1397	0.000	superfamily_ARM-type_fold	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,superfamily_Quinolinate_PRibosylTrfase_C,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR87	HGNC	ENSG00000171804	397	1	0.25	449	79	14.96	-	-	-
ZNF568	0	genome.wustl.edu	37	19	37441513	37441513	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A0DO-01B-11D-A12B-09	TCGA-BH-A0DO-11A-22D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	14649437-79a6-40bd-87b1-a278bfb2dcda	d5eab3e3-4a3c-4820-807d-a837c2d054f1	19	37441513	37441513	G	A	SNP	ZNF568	ENST00000333987	human	ensembl	69_37n	+1	known	missense	c.1458	p.M486I	0.489	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF568	HGNC	ENSG00000198453	166	0	0.00	150	24	13.79	-	-	-
