Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
AKAP8	0	genome.wustl.edu	37	19	15484018	15484019	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BH-A0HW-01A-11W-A050-09	TCGA-BH-A0HW-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	706ec3be-bd65-4f42-b5cc-603f7f62c91a	76e4b953-efcc-401c-916a-e3c7ecbe8de6	19	15484018	15484019	-	C	INS	AKAP8	ENST00000269701	human	ensembl	69_37n	-1	known	frame_shift_ins	c.505_504	p.Q168fs	0.986:0.890	NULL	pfam_AKAP95	-	no_errors	AKAP8	HGNC	ENSG00000105127	44	0	0.00	18	4	18.18	-	-	-
ARHGAP26	0	genome.wustl.edu	37	5	142513639	142513639	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A0HW-01A-11W-A050-09	TCGA-BH-A0HW-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	706ec3be-bd65-4f42-b5cc-603f7f62c91a	76e4b953-efcc-401c-916a-e3c7ecbe8de6	5	142513639	142513639	G	A	SNP	ARHGAP26	ENST00000443674	human	ensembl	69_37n	+1	novel	missense	c.662	p.R221H	0.358	NULL	pfam_RhoGAP_dom,pfam_SH3_domain,pfam_SH3_2,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,smart_RhoGAP_dom,smart_SH3_domain,pfscan_SH3_domain,pfscan_RhoGAP_dom	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ARHGAP26	HGNC	ENSG00000145819	163	1	0.61	63	16	20.00	-	-	-
ARID1A	0	genome.wustl.edu	37	1	27087880	27087880	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BH-A0HW-01A-11W-A050-09	TCGA-BH-A0HW-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	706ec3be-bd65-4f42-b5cc-603f7f62c91a	76e4b953-efcc-401c-916a-e3c7ecbe8de6	1	27087880	27087880	C	T	SNP	ARID1A	ENST00000324856	human	ensembl	69_37n	+1	known	nonsense	c.2167	p.Q723*	1.000	NULL	pfam_DUF3518,pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID1A	HGNC	ENSG00000117713	105	0	0.00	22	19	46.34	-	-	-
ATP6V1B1	0	genome.wustl.edu	37	2	71191572	71191573	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BH-A0HW-01A-11W-A050-09	TCGA-BH-A0HW-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	706ec3be-bd65-4f42-b5cc-603f7f62c91a	76e4b953-efcc-401c-916a-e3c7ecbe8de6	2	71191572	71191573	-	C	INS	ATP6V1B1	ENST00000234396	human	ensembl	69_37n	+1	known	frame_shift_ins	c.1148_1149	p.I386fs	1.000:0.999	pfam_ATPase_F1/V1/A1_a/bsu_nucl-bd,tigrfam_ATPase_V1-cplx_bsu	pfam_ATPase_F1/V1/A1_a/bsu_nucl-bd,pfam_ATPase_F1/V1/A1-cplx_a/bsu_C,pfam_ATPase_F1/V1/A1-cplx_a/bsu_N,superfamily_ATPase_F1/A1-cplx_a/bsu_N,superfamily_ATPase_F1/V1/A1-cplx_a/bsu_C,tigrfam_ATPase_V1-cplx_bsu	-	no_errors	ATP6V1B1	HGNC	ENSG00000116039	105	0	0.00	38	5	11.63	-	-	-
CAPRIN1	0	genome.wustl.edu	37	11	34093289	34093289	+	Missense_Mutation	SNP	A	A	G			TCGA-BH-A0HW-01A-11W-A050-09	TCGA-BH-A0HW-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	706ec3be-bd65-4f42-b5cc-603f7f62c91a	76e4b953-efcc-401c-916a-e3c7ecbe8de6	11	34093289	34093289	A	G	SNP	CAPRIN1	ENST00000341394	human	ensembl	69_37n	+1	known	missense	c.233	p.Y78C	1.000	NULL	pfam_Caprin-1_C	-	no_errors	CAPRIN1	HGNC	ENSG00000135387	225	0	0.00	142	138	49.11	-	-	-
CCDC3	0	genome.wustl.edu	37	10	12940472	12940472	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A0HW-01A-11W-A050-09	TCGA-BH-A0HW-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	706ec3be-bd65-4f42-b5cc-603f7f62c91a	76e4b953-efcc-401c-916a-e3c7ecbe8de6	10	12940472	12940472	C	T	SNP	CCDC3	ENST00000378825	human	ensembl	69_37n	-1	known	missense	c.757	p.A253T	0.003	NULL	NULL	-	no_errors	CCDC3	HGNC	ENSG00000151468	30	0	0.00	2	5	71.43	-	-	-
CEP55	0	genome.wustl.edu	37	10	95287850	95287851	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BH-A0HW-01A-11W-A050-09	TCGA-BH-A0HW-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	706ec3be-bd65-4f42-b5cc-603f7f62c91a	76e4b953-efcc-401c-916a-e3c7ecbe8de6	10	95287850	95287851	-	C	INS	CEP55	ENST00000371485	human	ensembl	69_37n	+1	known	frame_shift_ins	c.1335_1336	p.Q445fs	0.000:0.969	NULL	pfam_EABR	-	no_errors	CEP55	HGNC	ENSG00000138180	257	0	0.00	117	45	27.78	-	-	-
CHKB	0	genome.wustl.edu	37	22	51018484	51018484	+	Splice_Site	SNP	A	A	G			TCGA-BH-A0HW-01A-11W-A050-09	TCGA-BH-A0HW-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	706ec3be-bd65-4f42-b5cc-603f7f62c91a	76e4b953-efcc-401c-916a-e3c7ecbe8de6	22	51018484	51018484	A	G	SNP	CHKB	ENST00000471515	human	ensembl	69_37n	-1	known	splice_site	c.NULL	NULL	1.000	-	-	-	no_errors	CHKB	HGNC	ENSG00000100288	49	0	0.00	13	13	50.00	-	-	-
CNOT8	0	genome.wustl.edu	37	5	154254920	154254920	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A0HW-01A-11W-A050-09	TCGA-BH-A0HW-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	706ec3be-bd65-4f42-b5cc-603f7f62c91a	76e4b953-efcc-401c-916a-e3c7ecbe8de6	5	154254920	154254920	C	T	SNP	CNOT8	ENST00000285896	human	ensembl	69_37n	+1	known	missense	c.800	p.A267V	1.000	superfamily_RNaseH-like_dom	pfam_RNase_CAF1,superfamily_RNaseH-like_dom	-	no_errors	CNOT8	HGNC	ENSG00000155508	397	0	0.00	112	107	48.20	-	-	-
CNTN4	0	genome.wustl.edu	37	3	2787338	2787338	+	Silent	SNP	G	G	C			TCGA-BH-A0HW-01A-11W-A050-09	TCGA-BH-A0HW-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	706ec3be-bd65-4f42-b5cc-603f7f62c91a	76e4b953-efcc-401c-916a-e3c7ecbe8de6	3	2787338	2787338	G	C	SNP	CNTN4	ENST00000397461	human	ensembl	69_37n	+1	known	silent	c.315	p.S105	0.004	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Fibronectin_type3,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	CNTN4	HGNC	ENSG00000144619	461	0	0.00	82	60	42.25	-	-	-
CRTC2	0	genome.wustl.edu	37	1	153925831	153925831	+	Missense_Mutation	SNP	G	G	C			TCGA-BH-A0HW-01A-11W-A050-09	TCGA-BH-A0HW-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	706ec3be-bd65-4f42-b5cc-603f7f62c91a	76e4b953-efcc-401c-916a-e3c7ecbe8de6	1	153925831	153925831	G	C	SNP	CRTC2	ENST00000368633	human	ensembl	69_37n	-1	known	missense	c.518	p.S173C	1.000	NULL	NULL	-	no_errors	CRTC2	HGNC	ENSG00000160741	304	1	0.33	52	52	50.00	-	-	-
DNAJC22	0	genome.wustl.edu	37	12	49742746	49742746	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A0HW-01A-11W-A050-09	TCGA-BH-A0HW-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	706ec3be-bd65-4f42-b5cc-603f7f62c91a	76e4b953-efcc-401c-916a-e3c7ecbe8de6	12	49742746	49742746	G	A	SNP	DNAJC22	ENST00000395069	human	ensembl	69_37n	+1	known	missense	c.91	p.A31T	1.000	pfam_TM2	pfam_DnaJ_N,pfam_TM2,superfamily_DnaJ_N,smart_DnaJ_N,pfscan_DnaJ_N,prints_Hsp_DnaJ	-	no_errors	DNAJC22	HGNC	ENSG00000178401	92	0	0.00	28	5	15.15	-	-	-
EOMES	0	genome.wustl.edu	37	3	27761733	27761733	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A0HW-01A-11W-A050-09	TCGA-BH-A0HW-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	706ec3be-bd65-4f42-b5cc-603f7f62c91a	76e4b953-efcc-401c-916a-e3c7ecbe8de6	3	27761733	27761733	G	A	SNP	EOMES	ENST00000449599	human	ensembl	69_37n	-1	known	missense	c.965	p.A322V	0.999	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,prints_TF_T-box,pfscan_TF_T-box	-	no_errors	EOMES	HGNC	ENSG00000163508	209	0	0.00	53	47	46.53	-	-	-
FAM179B	0	genome.wustl.edu	37	14	45431981	45431982	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BH-A0HW-01A-11W-A050-09	TCGA-BH-A0HW-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	706ec3be-bd65-4f42-b5cc-603f7f62c91a	76e4b953-efcc-401c-916a-e3c7ecbe8de6	14	45431981	45431982	-	G	INS	FAM179B	ENST00000361577	human	ensembl	69_37n	+1	known	frame_shift_ins	c.357_358	p.L119fs	0.994:0.995	NULL	superfamily_ARM-type_fold	-	no_errors	FAM179B	HGNC	ENSG00000198718	55	0	0.00	13	2	13.33	-	-	-
FAM63A	0	genome.wustl.edu	37	1	150973769	150973769	+	Missense_Mutation	SNP	T	T	A			TCGA-BH-A0HW-01A-11W-A050-09	TCGA-BH-A0HW-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	706ec3be-bd65-4f42-b5cc-603f7f62c91a	76e4b953-efcc-401c-916a-e3c7ecbe8de6	1	150973769	150973769	T	A	SNP	FAM63A	ENST00000361738	human	ensembl	69_37n	-1	known	missense	c.677	p.K226M	1.000	pfam_DUF544	pfam_DUF544	-	no_errors	FAM63A	HGNC	ENSG00000143409	128	0	0.00	38	21	35.59	-	-	-
FGF23	0	genome.wustl.edu	37	12	4479710	4479710	+	Silent	SNP	C	C	T			TCGA-BH-A0HW-01A-11W-A050-09	TCGA-BH-A0HW-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	706ec3be-bd65-4f42-b5cc-603f7f62c91a	76e4b953-efcc-401c-916a-e3c7ecbe8de6	12	4479710	4479710	C	T	SNP	FGF23	ENST00000237837	human	ensembl	69_37n	-1	known	silent	c.555	p.S185	0.000	NULL	pfam_IL1_HBGF,superfamily_Cytokine_IL1-like,smart_IL1_HBGF,prints_IL1_HBGF	-	no_errors	FGF23	HGNC	ENSG00000118972	88	0	0.00	17	12	41.38	-	-	-
FLJ43860	0	genome.wustl.edu	37	8	142458155	142458155	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A0HW-01A-11W-A050-09	TCGA-BH-A0HW-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	706ec3be-bd65-4f42-b5cc-603f7f62c91a	76e4b953-efcc-401c-916a-e3c7ecbe8de6	8	142458155	142458155	G	A	SNP	FLJ43860	ENST00000430863	human	ensembl	69_37n	-1	known	missense	c.2671	p.R891W	0.003	NULL	NULL	-	pseudogene	AC100803.1	Clone_based_vega_gene	ENSG00000226807	47	0	0.00	8	21	72.41	-	-	-
FOLH1	0	genome.wustl.edu	37	11	49192781	49192781	+	Missense_Mutation	SNP	T	T	A			TCGA-BH-A0HW-01A-11W-A050-09	TCGA-BH-A0HW-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	706ec3be-bd65-4f42-b5cc-603f7f62c91a	76e4b953-efcc-401c-916a-e3c7ecbe8de6	11	49192781	49192781	T	A	SNP	FOLH1	ENST00000256999	human	ensembl	69_37n	-1	known	missense	c.1274	p.E425V	1.000	pfam_Peptidase_M28	pfam_TFR-like_dimer_dom,pfam_Protease-assoc_domain,pfam_Peptidase_M28,superfamily_TFR-like_dimer_dom	-	no_errors	FOLH1	HGNC	ENSG00000086205	193	0	0.00	95	51	34.93	-	-	-
GABBR2	0	genome.wustl.edu	37	9	101052989	101052989	+	Silent	SNP	G	G	A			TCGA-BH-A0HW-01A-11W-A050-09	TCGA-BH-A0HW-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	706ec3be-bd65-4f42-b5cc-603f7f62c91a	76e4b953-efcc-401c-916a-e3c7ecbe8de6	9	101052989	101052989	G	A	SNP	GABBR2	ENST00000259455	human	ensembl	69_37n	-1	known	silent	c.2703	p.H901	1.000	NULL	pfam_GPCR_3_C,pfam_ANF_lig-bd_rcpt,prints_GPCR_3_GABA_rcpt_B2,prints_GPCR_3_GABA_rcpt_B,prints_GPCR_3_GABA_rcpt_B1,prints_GPCR_3,pfscan_GPCR_3_C	-	no_errors	GABBR2	HGNC	ENSG00000136928	181	0	0.00	68	11	13.75	-	-	-
GDF6	0	genome.wustl.edu	37	8	97172770	97172770	+	Missense_Mutation	SNP	T	T	A			TCGA-BH-A0HW-01A-11W-A050-09	TCGA-BH-A0HW-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	706ec3be-bd65-4f42-b5cc-603f7f62c91a	76e4b953-efcc-401c-916a-e3c7ecbe8de6	8	97172770	97172770	T	A	SNP	GDF6	ENST00000287020	human	ensembl	69_37n	-1	known	missense	c.151	p.M51L	1.000	NULL	pfam_TGF-b_C,pfam_TGF-b_N,smart_TGF-b_C	-	no_errors	GDF6	HGNC	ENSG00000156466	56	0	0.00	20	4	16.67	-	-	-
GRID1	0	genome.wustl.edu	37	10	87406859	87406860	+	RNA	INS	-	-	A			TCGA-BH-A0HW-01A-11W-A050-09	TCGA-BH-A0HW-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	706ec3be-bd65-4f42-b5cc-603f7f62c91a	76e4b953-efcc-401c-916a-e3c7ecbe8de6	10	87406859	87406860	-	A	INS	GRID1	ENST00000474115	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	GRID1	HGNC	ENSG00000182771	45	0	0.00	6	4	40.00	-	-	-
KHK	0	genome.wustl.edu	37	2	27320451	27320451	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BH-A0HW-01A-11W-A050-09	TCGA-BH-A0HW-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	706ec3be-bd65-4f42-b5cc-603f7f62c91a	76e4b953-efcc-401c-916a-e3c7ecbe8de6	2	27320451	27320451	C	-	DEL	KHK	ENST00000260598	human	ensembl	69_37n	+1	known	frame_shift_del	c.498	p.R167fs	1.000	pfam_PfkB	pfam_PfkB	-	no_errors	KHK	HGNC	ENSG00000138030	64	0	0.00	16	2	11.11	-	-	-
KRT81	0	genome.wustl.edu	37	12	52681780	52681780	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BH-A0HW-01A-11W-A050-09	TCGA-BH-A0HW-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	706ec3be-bd65-4f42-b5cc-603f7f62c91a	76e4b953-efcc-401c-916a-e3c7ecbe8de6	12	52681780	52681780	C	T	SNP	KRT81	ENST00000327741	human	ensembl	69_37n	-1	known	nonsense	c.888	p.W296*	1.000	pfam_F,superfamily_Prefoldin	pfam_F,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	KRT81	HGNC	ENSG00000205426	175	0	0.00	72	21	22.58	-	-	-
LRP3	0	genome.wustl.edu	37	19	33695733	33695733	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BH-A0HW-01A-11W-A050-09	TCGA-BH-A0HW-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	706ec3be-bd65-4f42-b5cc-603f7f62c91a	76e4b953-efcc-401c-916a-e3c7ecbe8de6	19	33695733	33695733	G	-	DEL	LRP3	ENST00000253193	human	ensembl	69_37n	+1	known	frame_shift_del	c.450	p.G151fs	1.000	pfam_CUB,superfamily_CUB,smart_CUB,pfscan_CUB	pfam_LDrepeatLR_classA_rpt,pfam_CUB,superfamily_CUB,superfamily_LDrepeatLR_classA_rpt,smart_CUB,smart_LDrepeatLR_classA_rpt,pfscan_CUB,pfscan_LDrepeatLR_classA_rpt	-	no_errors	LRP3	HGNC	ENSG00000130881	62	0	0.00	15	2	11.11	-	-	-
MECOM	0	genome.wustl.edu	37	3	168813030	168813030	+	Silent	SNP	G	G	A			TCGA-BH-A0HW-01A-11W-A050-09	TCGA-BH-A0HW-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	706ec3be-bd65-4f42-b5cc-603f7f62c91a	76e4b953-efcc-401c-916a-e3c7ecbe8de6	3	168813030	168813030	G	A	SNP	MECOM	ENST00000494292	human	ensembl	69_37n	-1	known	silent	c.2826	p.C942	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Znf_BED_prd,smart_SET_dom,smart_Znf_C2H2-like,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	MECOM	HGNC	ENSG00000085276	142	0	0.00	106	18	14.52	-	-	-
OR10K2	0	genome.wustl.edu	37	1	158390579	158390579	+	Silent	SNP	C	C	T			TCGA-BH-A0HW-01A-11W-A050-09	TCGA-BH-A0HW-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	706ec3be-bd65-4f42-b5cc-603f7f62c91a	76e4b953-efcc-401c-916a-e3c7ecbe8de6	1	158390579	158390579	C	T	SNP	OR10K2	ENST00000314902	human	ensembl	69_37n	-1	known	silent	c.78	p.L26	0.212	prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR10K2	HGNC	ENSG00000180708	267	0	0.00	62	95	60.51	-	-	-
PCDHA6	0	genome.wustl.edu	37	5	140209681	140209681	+	Silent	SNP	C	C	T			TCGA-BH-A0HW-01A-11W-A050-09	TCGA-BH-A0HW-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	706ec3be-bd65-4f42-b5cc-603f7f62c91a	76e4b953-efcc-401c-916a-e3c7ecbe8de6	5	140209681	140209681	C	T	SNP	PCDHA6	ENST00000529310	human	ensembl	69_37n	+1	known	silent	c.2005	p.L669	0.795	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHA6	HGNC	ENSG00000081842	51	0	0.00	8	12	60.00	-	-	-
PORCN	0	genome.wustl.edu	37	X	48378800	48378800	+	Missense_Mutation	SNP	A	A	T			TCGA-BH-A0HW-01A-11W-A050-09	TCGA-BH-A0HW-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	706ec3be-bd65-4f42-b5cc-603f7f62c91a	76e4b953-efcc-401c-916a-e3c7ecbe8de6	X	48378800	48378800	A	T	SNP	PORCN	ENST00000326194	human	ensembl	69_37n	+1	known	missense	c.1322	p.E441V	1.000	NULL	pfam_MBOAT_fam	-	no_errors	PORCN	HGNC	ENSG00000102312	195	0	0.00	72	60	45.45	-	-	-
PTPRD	0	genome.wustl.edu	37	9	8486284	8486284	+	Missense_Mutation	SNP	G	G	T			TCGA-BH-A0HW-01A-11W-A050-09	TCGA-BH-A0HW-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	706ec3be-bd65-4f42-b5cc-603f7f62c91a	76e4b953-efcc-401c-916a-e3c7ecbe8de6	9	8486284	8486284	G	T	SNP	PTPRD	ENST00000356435	human	ensembl	69_37n	-1	known	missense	c.2533	p.P845T	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Fibronectin_type3,pfam_Ig_I-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRD	HGNC	ENSG00000153707	87	0	0.00	21	25	54.35	-	-	-
RAD51	0	genome.wustl.edu	37	15	41021711	41021711	+	Missense_Mutation	SNP	T	T	G			TCGA-BH-A0HW-01A-11W-A050-09	TCGA-BH-A0HW-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	706ec3be-bd65-4f42-b5cc-603f7f62c91a	76e4b953-efcc-401c-916a-e3c7ecbe8de6	15	41021711	41021711	T	G	SNP	RAD51	ENST00000382643	human	ensembl	69_37n	+1	known	missense	c.656	p.L219R	1.000	pfam_DNA_recomb/repair_Rad51_C,pfam_DNA_recomb/repair_RecA,smart_AAA+_ATPase,pirsf_DNA_recomb/repair_RecA-like,pfscan_DNA_recomb_RecA/RadB_ATP-bd,tigrfam_DNA_recomb/repair_Rad51	pfam_DNA_recomb/repair_Rad51_C,pfam_DNA_recomb/repair_RecA,superfamily_DNA_repair_Rad51/TF_NusA_a-hlx,smart_AAA+_ATPase,pirsf_DNA_recomb/repair_RecA-like,pfscan_DNA_recomb_RecA/RadB_ATP-bd,pfscan_RecA_monomer-monomer_interface,tigrfam_DNA_recomb/repair_Rad51	-	no_errors	RAD51	HGNC	ENSG00000051180	65	0	0.00	19	23	54.76	-	-	-
RPS4X	0	genome.wustl.edu	37	X	71493102	71493102	+	Missense_Mutation	SNP	T	T	G			TCGA-BH-A0HW-01A-11W-A050-09	TCGA-BH-A0HW-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	706ec3be-bd65-4f42-b5cc-603f7f62c91a	76e4b953-efcc-401c-916a-e3c7ecbe8de6	X	71493102	71493102	T	G	SNP	RPS4X	ENST00000316084	human	ensembl	69_37n	-1	known	missense	c.670	p.N224H	1.000	pirsf_Ribosomal_S4e	pfam_Ribosomal_S4e_central,pfam_Ribosomal_S4e_N,pfam_S4_RNA-bd,pfam_KOW,smart_S4_RNA-bd,pirsf_Ribosomal_S4e,pfscan_S4_RNA-bd	-	no_errors	RPS4X	HGNC	ENSG00000198034	239	0	0.00	106	98	48.04	-	-	-
SLC16A13	0	genome.wustl.edu	37	17	6940081	6940081	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A0HW-01A-11W-A050-09	TCGA-BH-A0HW-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	706ec3be-bd65-4f42-b5cc-603f7f62c91a	76e4b953-efcc-401c-916a-e3c7ecbe8de6	17	6940081	6940081	C	T	SNP	SLC16A13	ENST00000308027	human	ensembl	69_37n	+1	known	missense	c.235	p.P79S	0.996	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,pfam_Atg22-like,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC16A13	HGNC	ENSG00000174327	82	0	0.00	32	6	15.79	-	-	-
SLC17A7	0	genome.wustl.edu	37	19	49933805	49933806	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BH-A0HW-01A-11W-A050-09	TCGA-BH-A0HW-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	706ec3be-bd65-4f42-b5cc-603f7f62c91a	76e4b953-efcc-401c-916a-e3c7ecbe8de6	19	49933805	49933806	-	G	INS	SLC17A7	ENST00000221485	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1654_1653	p.R551fs	0.558:0.428	NULL	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC17A7	HGNC	ENSG00000104888	50	0	0.00	20	3	13.04	-	-	-
SLC9A3	0	genome.wustl.edu	37	5	475689	475689	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BH-A0HW-01A-11W-A050-09	TCGA-BH-A0HW-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	706ec3be-bd65-4f42-b5cc-603f7f62c91a	76e4b953-efcc-401c-916a-e3c7ecbe8de6	5	475689	475689	G	-	DEL	SLC9A3	ENST00000264938	human	ensembl	69_37n	-1	known	frame_shift_del	c.2238	p.D747fs	0.015	NULL	pfam_Cation/H_exchanger,superfamily_Reg_factor_effector_bac,prints_Na/H_exchanger_3/5,prints_NaH_exchanger,tigrfam_NaH_exchanger	-	no_errors	SLC9A3	HGNC	ENSG00000066230	58	0	0.00	17	2	10.53	-	-	-
TACC1	0	genome.wustl.edu	37	8	38696043	38696043	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A0HW-01A-11W-A050-09	TCGA-BH-A0HW-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	706ec3be-bd65-4f42-b5cc-603f7f62c91a	76e4b953-efcc-401c-916a-e3c7ecbe8de6	8	38696043	38696043	G	A	SNP	TACC1	ENST00000379931	human	ensembl	69_37n	+1	known	missense	c.1931	p.R644Q	0.999	pfam_TACC	pfam_TACC	-	no_errors	TACC1	HGNC	ENSG00000147526	278	1	0.36	485	95	16.38	-	-	-
TTC9C	0	genome.wustl.edu	37	11	62505789	62505789	+	Missense_Mutation	SNP	A	A	T			TCGA-BH-A0HW-01A-11W-A050-09	TCGA-BH-A0HW-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	706ec3be-bd65-4f42-b5cc-603f7f62c91a	76e4b953-efcc-401c-916a-e3c7ecbe8de6	11	62505789	62505789	A	T	SNP	TTC9C	ENST00000316461	human	ensembl	69_37n	+1	known	missense	c.451	p.T151S	1.000	NULL	pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC9C	HGNC	ENSG00000162222	135	0	0.00	85	53	38.41	-	-	-
WBSCR28	0	genome.wustl.edu	37	7	73279580	73279580	+	Silent	SNP	C	C	T			TCGA-BH-A0HW-01A-11W-A050-09	TCGA-BH-A0HW-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	706ec3be-bd65-4f42-b5cc-603f7f62c91a	76e4b953-efcc-401c-916a-e3c7ecbe8de6	7	73279580	73279580	C	T	SNP	WBSCR28	ENST00000320531	human	ensembl	69_37n	+1	known	silent	c.330	p.G110	0.007	NULL	NULL	-	no_errors	WBSCR28	HGNC	ENSG00000175877	79	0	0.00	25	7	21.88	-	-	-
WNT6	0	genome.wustl.edu	37	2	219735910	219735910	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A0HW-01A-11W-A050-09	TCGA-BH-A0HW-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	706ec3be-bd65-4f42-b5cc-603f7f62c91a	76e4b953-efcc-401c-916a-e3c7ecbe8de6	2	219735910	219735910	G	A	SNP	WNT6	ENST00000233948	human	ensembl	69_37n	+1	known	missense	c.242	p.R81H	1.000	pfam_Wnt,smart_Wnt	pfam_Wnt,smart_Wnt,prints_Wnt,prints_Wnt6	-	no_errors	WNT6	HGNC	ENSG00000115596	39	0	0.00	10	7	38.89	-	-	-
ZFP36L2	0	genome.wustl.edu	37	2	43452622	43452623	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BH-A0HW-01A-11W-A050-09	TCGA-BH-A0HW-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	706ec3be-bd65-4f42-b5cc-603f7f62c91a	76e4b953-efcc-401c-916a-e3c7ecbe8de6	2	43452622	43452623	-	C	INS	ZFP36L2	ENST00000282388	human	ensembl	69_37n	-1	known	frame_shift_ins	c.321_320	p.G108fs	0.998:1.000	pfam_Tis11B_N	pfam_Tis11B_N,pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	ZFP36L2	HGNC	ENSG00000152518	49	0	0.00	1	9	90.00	-	-	-
ZNF135	0	genome.wustl.edu	37	19	58578672	58578673	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BH-A0HW-01A-11W-A050-09	TCGA-BH-A0HW-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	706ec3be-bd65-4f42-b5cc-603f7f62c91a	76e4b953-efcc-401c-916a-e3c7ecbe8de6	19	58578672	58578673	-	A	INS	ZNF135	ENST00000401053	human	ensembl	69_37n	+1	known	frame_shift_ins	c.892_893	p.C299fs	0.001:0.007	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF135	HGNC	ENSG00000176293	112	0	0.00	55	49	47.12	-	-	-
