Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
CATSPER2	0	genome.wustl.edu	37	15	43939311	43939311	+	Missense_Mutation	SNP	G	G	C			TCGA-BH-A0W3-01A-11D-A10G-09	TCGA-BH-A0W3-10A-01X-A10H-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3fa14183-e0c5-4dc2-bb4a-d8dd42f6578b	6f5bdee8-4595-46eb-960a-3001189bb761	15	43939311	43939311	G	C	SNP	CATSPER2	ENST00000299989	human	ensembl	69_37n	-1	known	missense	c.325	p.L109V	0.977	NULL	pfam_Ion_trans_dom	-	no_errors	CATSPER2	HGNC	ENSG00000166762	181	0	0.00	154	106	40.61	-	-	-
COQ9	0	genome.wustl.edu	37	16	57493549	57493549	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BH-A0W3-01A-11D-A10G-09	TCGA-BH-A0W3-10A-01X-A10H-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3fa14183-e0c5-4dc2-bb4a-d8dd42f6578b	6f5bdee8-4595-46eb-960a-3001189bb761	16	57493549	57493549	T	-	DEL	COQ9	ENST00000262507	human	ensembl	69_37n	+1	known	frame_shift_del	c.784	p.S262fs	1.000	pfam_COQ9,tigrfam_Ubiq_biosynth_COQ9	pfam_COQ9,superfamily_Homeodomain-like,tigrfam_Ubiq_biosynth_COQ9	-	no_errors	COQ9	HGNC	ENSG00000088682	179	0	0.00	15	2	11.76	-	-	-
CP	0	genome.wustl.edu	37	3	148930395	148930395	+	Silent	SNP	G	G	A			TCGA-BH-A0W3-01A-11D-A10G-09	TCGA-BH-A0W3-10A-01X-A10H-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3fa14183-e0c5-4dc2-bb4a-d8dd42f6578b	6f5bdee8-4595-46eb-960a-3001189bb761	3	148930395	148930395	G	A	SNP	CP	ENST00000264613	human	ensembl	69_37n	-1	known	silent	c.237	p.T79	0.298	superfamily_Cupredoxin	pfam_Cu-oxidase_2,pfam_Cu-oxidase_3,pfam_Cu-oxidase,superfamily_Cupredoxin	-	no_errors	CP	HGNC	ENSG00000047457	131	0	0.00	138	117	45.70	-	-	-
ELAC2	0	genome.wustl.edu	37	17	12901771	12901771	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BH-A0W3-01A-11D-A10G-09	TCGA-BH-A0W3-10A-01X-A10H-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3fa14183-e0c5-4dc2-bb4a-d8dd42f6578b	6f5bdee8-4595-46eb-960a-3001189bb761	17	12901771	12901771	G	A	SNP	ELAC2	ENST00000584650	human	ensembl	69_37n	-1	novel	nonsense	c.877	p.R293*	0.999	NULL	pfam_Beta-lactamas-like	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ELAC2	HGNC	ENSG00000006744	205	0	0.00	70	56	44.44	-	-	-
ELK3	0	genome.wustl.edu	37	12	96653588	96653588	+	Missense_Mutation	SNP	C	C	A			TCGA-BH-A0W3-01A-11D-A10G-09	TCGA-BH-A0W3-10A-01X-A10H-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3fa14183-e0c5-4dc2-bb4a-d8dd42f6578b	6f5bdee8-4595-46eb-960a-3001189bb761	12	96653588	96653588	C	A	SNP	ELK3	ENST00000228741	human	ensembl	69_37n	+1	known	missense	c.1082	p.P361Q	1.000	NULL	pfam_Ets,smart_Ets,prints_Ets,pfscan_Ets	-	no_errors	ELK3	HGNC	ENSG00000111145	148	0	0.00	31	32	50.79	-	-	-
FSTL4	0	genome.wustl.edu	37	5	132585181	132585181	+	Missense_Mutation	SNP	A	A	T			TCGA-BH-A0W3-01A-11D-A10G-09	TCGA-BH-A0W3-10A-01X-A10H-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3fa14183-e0c5-4dc2-bb4a-d8dd42f6578b	6f5bdee8-4595-46eb-960a-3001189bb761	5	132585181	132585181	A	T	SNP	FSTL4	ENST00000265342	human	ensembl	69_37n	-1	known	missense	c.815	p.V272D	0.994	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Kazal-type_dom,pfam_Prot_inh_Kazal,smart_Prot_inh_Kazal,smart_Ig_sub,smart_Ig_sub2,pfscan_EF_HAND_2,pfscan_Ig-like	-	no_errors	FSTL4	HGNC	ENSG00000053108	99	0	0.00	10	7	41.18	-	-	-
KCNK4	0	genome.wustl.edu	37	11	64064601	64064601	+	Missense_Mutation	SNP	T	T	A			TCGA-BH-A0W3-01A-11D-A10G-09	TCGA-BH-A0W3-10A-01X-A10H-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3fa14183-e0c5-4dc2-bb4a-d8dd42f6578b	6f5bdee8-4595-46eb-960a-3001189bb761	11	64064601	64064601	T	A	SNP	KCNK4	ENST00000394525	human	ensembl	69_37n	+1	known	missense	c.324	p.N108K	0.981	pfam_Ion_trans_2,prints_2pore_dom_K_chnl	pfam_Ion_trans_2,prints_2pore_dom_K_chnl_TRAAK,prints_2pore_dom_K_chnl_TREK,prints_2pore_dom_K_chnl,prints_2pore_dom_K_chnl_TASK	-	no_errors	KCNK4	HGNC	ENSG00000182450	31	0	0.00	7	10	58.82	-	-	-
LMO7	0	genome.wustl.edu	37	13	76370783	76370783	+	Silent	SNP	A	A	G			TCGA-BH-A0W3-01A-11D-A10G-09	TCGA-BH-A0W3-10A-01X-A10H-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3fa14183-e0c5-4dc2-bb4a-d8dd42f6578b	6f5bdee8-4595-46eb-960a-3001189bb761	13	76370783	76370783	A	G	SNP	LMO7	ENST00000357063	human	ensembl	69_37n	+1	known	silent	c.516	p.T172	0.317	superfamily_CH-domain,smart_CH-domain	pfam_CH-domain,pfam_PDZ,superfamily_CH-domain,superfamily_PDZ,smart_CH-domain,smart_PDZ,pfscan_CH-domain,pfscan_PDZ,prints_SM22_calponin	-	no_errors	LMO7	HGNC	ENSG00000136153	120	0	0.00	58	50	46.30	-	-	-
LRCH1	0	genome.wustl.edu	37	13	47279264	47279264	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A0W3-01A-11D-A10G-09	TCGA-BH-A0W3-10A-01X-A10H-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3fa14183-e0c5-4dc2-bb4a-d8dd42f6578b	6f5bdee8-4595-46eb-960a-3001189bb761	13	47279264	47279264	G	A	SNP	LRCH1	ENST00000389798	human	ensembl	69_37n	+1	known	missense	c.1462	p.A488T	1.000	NULL	pfam_Leu-rich_rpt,pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,smart_Leu-rich_rpt_typical-subtyp,smart_CH-domain,pfscan_CH-domain	-	no_errors	LRCH1	HGNC	ENSG00000136141	117	0	0.00	60	110	64.71	-	-	-
METTL5	0	genome.wustl.edu	37	2	170669020	170669020	+	Missense_Mutation	SNP	T	T	G			TCGA-BH-A0W3-01A-11D-A10G-09	TCGA-BH-A0W3-10A-01X-A10H-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3fa14183-e0c5-4dc2-bb4a-d8dd42f6578b	6f5bdee8-4595-46eb-960a-3001189bb761	2	170669020	170669020	T	G	SNP	METTL5	ENST00000442181	human	ensembl	69_37n	-1	novel	missense	c.288	p.L96F	0.726	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	METTL5	HGNC	ENSG00000138382	110	0	0.00	118	92	43.60	-	-	-
MMRN2	0	genome.wustl.edu	37	10	88703812	88703812	+	Silent	SNP	G	G	A			TCGA-BH-A0W3-01A-11D-A10G-09	TCGA-BH-A0W3-10A-01X-A10H-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3fa14183-e0c5-4dc2-bb4a-d8dd42f6578b	6f5bdee8-4595-46eb-960a-3001189bb761	10	88703812	88703812	G	A	SNP	MMRN2	ENST00000372027	human	ensembl	69_37n	-1	known	silent	c.729	p.P243	1.000	NULL	pfam_C1q,pfam_EMI_domain,superfamily_Tumour_necrosis_fac-like,superfamily_tRNA-bd_arm,smart_C1q,prints_C1q,pfscan_C1q,pfscan_EMI_domain	-	no_errors	MMRN2	HGNC	ENSG00000173269	34	0	0.00	14	7	33.33	-	-	-
MYH7B	0	genome.wustl.edu	37	20	33568852	33568852	+	Silent	SNP	C	C	T			TCGA-BH-A0W3-01A-11D-A10G-09	TCGA-BH-A0W3-10A-01X-A10H-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3fa14183-e0c5-4dc2-bb4a-d8dd42f6578b	6f5bdee8-4595-46eb-960a-3001189bb761	20	33568852	33568852	C	T	SNP	MYH7B	ENST00000262873	human	ensembl	69_37n	+1	novel	silent	c.642	p.S214	0.998	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_Myosin_S1_N,superfamily_Prefoldin,superfamily_tRNA-bd_arm,superfamily_t-SNARE,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH7B	HGNC	ENSG00000078814	163	0	0.00	18	26	59.09	-	-	-
PDE2A	0	genome.wustl.edu	37	11	72290428	72290428	+	Splice_Site	SNP	C	C	G			TCGA-BH-A0W3-01A-11D-A10G-09	TCGA-BH-A0W3-10A-01X-A10H-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3fa14183-e0c5-4dc2-bb4a-d8dd42f6578b	6f5bdee8-4595-46eb-960a-3001189bb761	11	72290428	72290428	C	G	SNP	PDE2A	ENST00000334456	human	ensembl	69_37n	-1	known	splice_site	c.2257-1	e27-1	1.000	-	-	-	no_errors	PDE2A	HGNC	ENSG00000186642	42	0	0.00	8	5	38.46	-	-	-
PIK3CA	0	genome.wustl.edu	37	3	178936082	178936082	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A0W3-01A-11D-A10G-09	TCGA-BH-A0W3-10A-01X-A10H-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3fa14183-e0c5-4dc2-bb4a-d8dd42f6578b	6f5bdee8-4595-46eb-960a-3001189bb761	3	178936082	178936082	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	+1	known	missense	c.1624	p.E542K	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	36	0	0.00	69	76	52.41	-	-	-
SCN2A	0	genome.wustl.edu	37	2	166245338	166245338	+	Silent	SNP	C	C	T			TCGA-BH-A0W3-01A-11D-A10G-09	TCGA-BH-A0W3-10A-01X-A10H-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3fa14183-e0c5-4dc2-bb4a-d8dd42f6578b	6f5bdee8-4595-46eb-960a-3001189bb761	2	166245338	166245338	C	T	SNP	SCN2A	ENST00000283256	human	ensembl	69_37n	+1	known	silent	c.5022	p.Y1674	0.954	pfam_Ion_trans_dom,pfam_PKD1_2_channel	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_DUF3451,pfam_PKD1_2_channel,smart_IQ_motif_EF-hand-BS,prints_Na_channel_asu,prints_PKD_2,pfscan_IQ_motif_EF-hand-BS	-	no_errors	SCN2A	HGNC	ENSG00000136531	854	0	0.00	144	121	45.66	-	-	-
SIK3	0	genome.wustl.edu	37	11	116732018	116732018	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BH-A0W3-01A-11D-A10G-09	TCGA-BH-A0W3-10A-01X-A10H-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3fa14183-e0c5-4dc2-bb4a-d8dd42f6578b	6f5bdee8-4595-46eb-960a-3001189bb761	11	116732018	116732018	G	-	DEL	SIK3	ENST00000375300	human	ensembl	69_37n	-1	known	frame_shift_del	c.2253	p.M752fs	0.024	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Prot_kinase_cat_dom	-	no_errors	SIK3	HGNC	ENSG00000160584	67	0	0.00	8	26	76.47	-	-	-
TMEM120B	0	genome.wustl.edu	37	12	122212588	122212588	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A0W3-01A-11D-A10G-09	TCGA-BH-A0W3-10A-01X-A10H-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3fa14183-e0c5-4dc2-bb4a-d8dd42f6578b	6f5bdee8-4595-46eb-960a-3001189bb761	12	122212588	122212588	G	A	SNP	TMEM120B	ENST00000342607	human	ensembl	69_37n	+1	known	missense	c.797	p.R266Q	1.000	pfam_TMPIT	pfam_TMPIT	-	no_errors	TMEM120B	HGNC	ENSG00000188735	114	0	0.00	32	38	54.29	-	-	-
TRBV4-1	0	genome.wustl.edu	37	7	142013464	142013464	+	Silent	SNP	C	C	T			TCGA-BH-A0W3-01A-11D-A10G-09	TCGA-BH-A0W3-10A-01X-A10H-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3fa14183-e0c5-4dc2-bb4a-d8dd42f6578b	6f5bdee8-4595-46eb-960a-3001189bb761	7	142013464	142013464	C	T	SNP	TRBV4-1	ENST00000390357	human	ensembl	69_37n	+1	known	silent	c.319	p.L107	0.000	pfam_Ig_V-set,pfscan_Ig-like	pfam_Ig_V-set,pfscan_Ig-like	-	no_stop_codon:bad_bp_length_for_coding_region	TRBV4-1	HGNC	ENSG00000211710	41	0	0.00	23	22	48.89	-	-	-
WEE2	0	genome.wustl.edu	37	7	141427142	141427142	+	Silent	SNP	A	A	T			TCGA-BH-A0W3-01A-11D-A10G-09	TCGA-BH-A0W3-10A-01X-A10H-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3fa14183-e0c5-4dc2-bb4a-d8dd42f6578b	6f5bdee8-4595-46eb-960a-3001189bb761	7	141427142	141427142	A	T	SNP	WEE2	ENST00000397541	human	ensembl	69_37n	+1	known	silent	c.1431	p.A477	0.315	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Wee1-like_protein_kinase,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Wee1-like_protein_kinase,pfscan_Prot_kinase_cat_dom	-	no_errors	WEE2	HGNC	ENSG00000214102	63	0	0.00	34	22	39.29	-	-	-
ZKSCAN1	0	genome.wustl.edu	37	7	99631717	99631717	+	Missense_Mutation	SNP	C	C	G			TCGA-BH-A0W3-01A-11D-A10G-09	TCGA-BH-A0W3-10A-01X-A10H-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3fa14183-e0c5-4dc2-bb4a-d8dd42f6578b	6f5bdee8-4595-46eb-960a-3001189bb761	7	99631717	99631717	C	G	SNP	ZKSCAN1	ENST00000324306	human	ensembl	69_37n	+1	known	missense	c.1589	p.S530C	0.227	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZKSCAN1	HGNC	ENSG00000106261	58	0	0.00	34	19	35.85	-	-	-
