Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
ABCD2	0	genome.wustl.edu	37	12	39947821	39947821	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	12	39947821	39947821	G	A	SNP	ABCD2	ENST00000308666	human	ensembl	69_37n	-1	known	nonsense	c.2116	p.Q706*	1.000	NULL	pfam_ABC_Ald_N,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCD2	HGNC	ENSG00000173208	393	0	0.00	277	95	25.54	-	-	-
AGBL1	0	genome.wustl.edu	37	15	87531306	87531306	+	Silent	SNP	C	C	T			TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	15	87531306	87531306	C	T	SNP	AGBL1	ENST00000441037	human	ensembl	69_37n	+1	known	silent	c.3172	p.L1058	0.000	NULL	pfam_Peptidase_M14,superfamily_ARM-type_fold	-	no_errors	AGBL1	HGNC	ENSG00000166748	536	1	0.19	444	119	21.14	-	-	-
ANO5	0	genome.wustl.edu	37	11	22271833	22271833	+	Missense_Mutation	SNP	A	A	T			TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	11	22271833	22271833	A	T	SNP	ANO5	ENST00000324559	human	ensembl	69_37n	+1	known	missense	c.929	p.Y310F	1.000	pfam_Anoctamin	pfam_Anoctamin	-	no_errors	ANO5	HGNC	ENSG00000171714	586	0	0.00	485	161	24.88	-	-	-
APLF	0	genome.wustl.edu	37	2	68804999	68804999	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	2	68804999	68804999	G	A	SNP	APLF	ENST00000303795	human	ensembl	69_37n	+1	known	missense	c.1381	p.E461K	0.519	NULL	pfam_Znf_C2H2_APLF-like,superfamily_SMAD_FHA_domain	-	no_errors	APLF	HGNC	ENSG00000169621	387	0	0.00	331	122	26.87	-	-	-
ASXL3	0	genome.wustl.edu	37	18	31320321	31320321	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	18	31320321	31320321	G	A	SNP	ASXL3	ENST00000269197	human	ensembl	69_37n	+1	known	missense	c.2953	p.D985N	1.000	NULL	superfamily_Znf_FYVE_PHD	-	no_errors	ASXL3	HGNC	ENSG00000141431	103	0	0.00	93	29	23.77	-	-	-
ATRNL1	0	genome.wustl.edu	37	10	117075136	117075136	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	10	117075136	117075136	C	T	SNP	ATRNL1	ENST00000355044	human	ensembl	69_37n	+1	known	missense	c.2927	p.S976F	1.000	pfam_Plexin_repeat,superfamily_Plexin-like_fold,smart_Plexin-like	pfam_Kelch_1,pfam_Kelch_2,pfam_Plexin_repeat,pfam_CUB,pfam_EGF_extracell,superfamily_C-type_lectin_fold,superfamily_CUB,superfamily_Plexin-like_fold,smart_EGF-like,smart_CUB,smart_Plexin-like,smart_C-type_lectin,smart_EGF_laminin,pfscan_CUB,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_C-type_lectin	-	no_errors	ATRNL1	HGNC	ENSG00000107518	212	0	0.00	154	44	22.22	-	-	-
BEND3	0	genome.wustl.edu	37	6	107391941	107391941	+	Missense_Mutation	SNP	C	C	A			TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	6	107391941	107391941	C	A	SNP	BEND3	ENST00000369042	human	ensembl	69_37n	-1	known	missense	c.454	p.V152L	0.000	NULL	pfam_BEN_domain	-	no_errors	BEND3	HGNC	ENSG00000178409	232	0	0.00	168	61	26.64	-	-	-
BPTF	0	genome.wustl.edu	37	17	65909295	65909295	+	Silent	SNP	C	C	A			TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	17	65909295	65909295	C	A	SNP	BPTF	ENST00000321892	human	ensembl	69_37n	+1	known	silent	c.5673	p.I1891	1.000	NULL	pfam_Bromodomain,pfam_DDT_dom,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_DDT_dom_subgr,smart_Znf_PHD,smart_Bromodomain,pfscan_Znf_PHD-finger,pfscan_DDT_dom_superfamily,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BPTF	HGNC	ENSG00000171634	71	0	0.00	46	25	35.21	-	-	-
C1orf31	0	genome.wustl.edu	37	1	234519488	234519488	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	1	234519488	234519488	G	A	SNP	C1orf31	ENST00000366615	human	ensembl	69_37n	+1	known	missense	c.392	p.R131K	1.000	pfam_Cyt_c_oxidase_su6B,superfamily_Cyt_c_oxidase_su6B	pfam_Cyt_c_oxidase_su6B,superfamily_Cyt_c_oxidase_su6B	-	no_errors	C1orf31	HGNC	ENSG00000168275	121	0	0.00	102	33	24.44	-	-	-
C3orf30	0	genome.wustl.edu	37	3	118865111	118865111	+	Silent	SNP	C	C	T			TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	3	118865111	118865111	C	T	SNP	C3orf30	ENST00000295622	human	ensembl	69_37n	+1	known	silent	c.75	p.G25	0.000	NULL	superfamily_cAMP_dep_PK_reg_su_I/II_a/b	-	no_errors	C3orf30	HGNC	ENSG00000163424	54	0	0.00	40	13	24.53	-	-	-
C9orf91	0	genome.wustl.edu	37	9	117396146	117396146	+	Missense_Mutation	SNP	G	G	C			TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	9	117396146	117396146	G	C	SNP	C9orf91	ENST00000374049	human	ensembl	69_37n	+1	known	missense	c.576	p.Q192H	1.000	NULL	NULL	-	no_errors	C9orf91	HGNC	ENSG00000157693	80	0	0.00	86	20	18.87	-	-	-
CDC25C	0	genome.wustl.edu	37	5	137621494	137621494	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	5	137621494	137621494	G	T	SNP	CDC25C	ENST00000514017	human	ensembl	69_37n	-1	novel	nonsense	c.713	p.S238*	1.000	superfamily_Rhodanese-like_dom,prints_MPI_Phosphatase	pfam_MPI_Phosphatase,pfam_Rhodanese-like_dom,superfamily_Rhodanese-like_dom,smart_Rhodanese-like_dom,pfscan_Rhodanese-like_dom,prints_MPI_Phosphatase	-	no_start_codon:pseudogene:no_stop_codon	CDC25C	HGNC	ENSG00000158402	152	1	0.65	133	35	20.83	-	-	-
COG3	0	genome.wustl.edu	37	13	46050340	46050340	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	13	46050340	46050340	C	T	SNP	COG3	ENST00000349995	human	ensembl	69_37n	+1	known	missense	c.179	p.P60L	1.000	NULL	pfam_COG_su3,superfamily_Cullin_repeat-like_dom	-	no_errors	COG3	HGNC	ENSG00000136152	158	0	0.00	100	32	24.24	-	-	-
DNMT3A	0	genome.wustl.edu	37	2	25471111	25471111	+	Missense_Mutation	SNP	T	T	G			TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	2	25471111	25471111	T	G	SNP	DNMT3A	ENST00000264709	human	ensembl	69_37n	-1	known	missense	c.650	p.K217T	1.000	NULL	pfam_PWWP,pfam_C5_MeTfrase,superfamily_Znf_FYVE_PHD,smart_PWWP,pfscan_PWWP	-	no_errors	DNMT3A	HGNC	ENSG00000119772	167	0	0.00	145	36	19.89	-	-	-
DTX4	0	genome.wustl.edu	37	11	58949648	58949648	+	Silent	SNP	G	G	A			TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	11	58949648	58949648	G	A	SNP	DTX4	ENST00000227451	human	ensembl	69_37n	+1	known	silent	c.648	p.V216	0.000	NULL	pfam_WWE-dom,pfam_Znf_C3HC4_RING-type,smart_WWE-dom_subgr,smart_Znf_RING,pfscan_WWE-dom,pfscan_Znf_RING	-	no_errors	DTX4	HGNC	ENSG00000110042	8	0	0.00	11	4	26.67	-	-	-
EEF1B2	0	genome.wustl.edu	37	2	207027604	207027604	+	Missense_Mutation	SNP	C	C	G			TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	2	207027604	207027604	C	G	SNP	EEF1B2	ENST00000236957	human	ensembl	69_37n	+1	known	missense	c.675	p.I225M	1.000	pfam_Transl_elong_fac_EF1B_bsu/dsu,superfamily_Transl_elong_fac_EF1B_bsu/dsu,smart_Transl_elong_fac_EF1B_bsu/dsu	pfam_Transl_elong_fac_EF1B_bsu/dsu,pfam_EF-1_beta_acid_region_euk,superfamily_Transl_elong_fac_EF1B_bsu/dsu,superfamily_Glutathione-S-Trfase_C-like,smart_Transl_elong_fac_EF1B_bsu/dsu	-	no_errors	EEF1B2	HGNC	ENSG00000114942	107	0	0.00	96	45	31.91	-	-	-
EIF1AX	0	genome.wustl.edu	37	X	20148714	20148714	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	X	20148714	20148714	C	A	SNP	EIF1AX	ENST00000379607	human	ensembl	69_37n	-1	known	nonsense	c.349	p.E117*	1.000	superfamily_NA-bd_OB-fold-like	pfam_RNA-binding_domain_S1_IF1,superfamily_NA-bd_OB-fold-like,smart_TIF_eIF-1A,pfscan_RNA-binding_domain_S1_IF1,tigrfam_TIF_eIF-1A	-	no_errors	EIF1AX	HGNC	ENSG00000173674	565	0	0.00	518	142	21.52	-	-	-
ELMOD2	0	genome.wustl.edu	37	4	141446688	141446688	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	4	141446688	141446688	G	A	SNP	ELMOD2	ENST00000323570	human	ensembl	69_37n	+1	known	missense	c.106	p.D36N	1.000	NULL	pfam_Engulfment_cell_motility_ELMO	-	no_errors	ELMOD2	HGNC	ENSG00000179387	495	0	0.00	229	137	37.43	-	-	-
ENPP2	0	genome.wustl.edu	37	8	120608116	120608116	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	8	120608116	120608116	G	A	SNP	ENPP2	ENST00000259486	human	ensembl	69_37n	-1	known	missense	c.1099	p.H367Y	1.000	pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core	pfam_Phosphodiest/P_Trfase,pfam_Somatomedin_B_dom,pfam_DNA/RNA_non-sp_Endonuclease,superfamily_Alkaline_phosphatase_core,smart_Somatomedin_B_dom,smart_DNA/RNA_non-sp_Endonuclease,smart_Extracellular_endonuc_su_A,pfscan_Somatomedin_B_dom,prints_Somatomedin_B_chordata	-	no_errors	ENPP2	HGNC	ENSG00000136960	330	0	0.00	237	61	20.47	-	-	-
GRIP2	0	genome.wustl.edu	37	3	14551332	14551332	+	RNA	SNP	C	C	T			TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	3	14551332	14551332	C	T	SNP	GRIP2	ENST00000273083	human	ensembl	69_37n	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	GRIP2	HGNC	ENSG00000144596	52	0	0.00	124	20	13.89	-	-	-
HLF	0	genome.wustl.edu	37	17	53342935	53342935	+	Silent	SNP	G	G	A			TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	17	53342935	53342935	G	A	SNP	HLF	ENST00000226067	human	ensembl	69_37n	+1	known	silent	c.90	p.L30	1.000	NULL	pfam_bZIP_2,smart_bZIP,pfscan_bZIP	-	no_errors	HLF	HGNC	ENSG00000108924	73	0	0.00	43	16	27.12	-	-	-
IL17RC	0	genome.wustl.edu	37	3	9959575	9959575	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	3	9959575	9959575	G	A	SNP	IL17RC	ENST00000451165	human	ensembl	69_37n	+1	known	missense	c.155	p.S52N	0.002	NULL	NULL	-	no_errors	IL17RC	HGNC	ENSG00000163702	45	0	0.00	44	21	31.34	-	-	-
KBTBD10	0	genome.wustl.edu	37	2	170366577	170366577	+	Missense_Mutation	SNP	G	G	C			TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	2	170366577	170366577	G	C	SNP	KBTBD10	ENST00000284669	human	ensembl	69_37n	+1	known	missense	c.289	p.D97H	1.000	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KBTBD10	HGNC	ENSG00000239474	213	0	0.00	205	60	22.64	-	-	-
KCNN2	0	genome.wustl.edu	37	5	113831863	113831863	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	5	113831863	113831863	C	T	SNP	KCNN2	ENST00000264773	human	ensembl	69_37n	+1	known	missense	c.1724	p.S575L	1.000	NULL	pfam_K_chnl_Ca-activ_SK,pfam_CaM-bd_dom,pfam_Ion_trans_2,superfamily_CaM-bd_dom,prints_K_chnl_Ca-activ_SK	-	no_errors	KCNN2	HGNC	ENSG00000080709	69	0	0.00	50	24	32.43	-	-	-
LIMS2	0	genome.wustl.edu	37	2	128399741	128399741	+	Missense_Mutation	SNP	C	C	A			TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	2	128399741	128399741	C	A	SNP	LIMS2	ENST00000324938	human	ensembl	69_37n	-1	known	missense	c.615	p.K205N	1.000	pfam_Znf_LIM,smart_Znf_LIM,pirsf_PINCH	pfam_Znf_LIM,smart_Znf_LIM,pirsf_PINCH,pfscan_Znf_LIM	-	no_errors	LIMS2	HGNC	ENSG00000072163	16	0	0.00	10	5	33.33	-	-	-
LINC00621	0	genome.wustl.edu	37	13	23490129	23490129	+	RNA	SNP	C	C	G			TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	13	23490129	23490129	C	G	SNP	LINC00621	ENST00000577004	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.998	-	-	-	no_errors	LINC00621	HGNC	ENSG00000262619	84	0	0.00	67	27	28.72	-	-	-
LRRIQ4	0	genome.wustl.edu	37	3	169539890	169539890	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	3	169539890	169539890	G	A	SNP	LRRIQ4	ENST00000340806	human	ensembl	69_37n	+1	known	missense	c.181	p.E61K	0.072	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,pfscan_IQ_motif_EF-hand-BS	-	no_errors	LRRIQ4	HGNC	ENSG00000188306	140	0	0.00	140	34	19.54	-	-	-
MAPK9	0	genome.wustl.edu	37	5	179676088	179676088	+	Silent	SNP	G	G	A			TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	5	179676088	179676088	G	A	SNP	MAPK9	ENST00000452135	human	ensembl	69_37n	-1	known	silent	c.501	p.I167	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_MAPK_JNK	-	no_errors	MAPK9	HGNC	ENSG00000050748	213	0	0.00	201	48	19.28	-	-	-
MARS2	0	genome.wustl.edu	37	2	198570604	198570604	+	Silent	SNP	C	C	T			TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	2	198570604	198570604	C	T	SNP	MARS2	ENST00000282276	human	ensembl	69_37n	+1	known	silent	c.475	p.L159	1.000	pfam_Methionyl/Leucyl_tRNA_Synth,tigrfam_Met-tRNA_synth	pfam_Methionyl/Leucyl_tRNA_Synth,pfam_aa-tRNA-synth_Ia,pfam_Cys-tRNA/MSH_ligase,superfamily_tRNAsynth_1a_anticodon-bd,prints_Met-tRNA_synth,tigrfam_Met-tRNA_synth	-	no_errors	MARS2	HGNC	ENSG00000247626	38	0	0.00	25	11	30.56	-	-	-
MIA2	0	genome.wustl.edu	37	14	39717240	39717240	+	Missense_Mutation	SNP	C	C	G			TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	14	39717240	39717240	C	G	SNP	MIA2	ENST00000556784	human	ensembl	69_37n	+1	known	missense	c.1459	p.Q487E	0.677	NULL	pfam_SH3_2,superfamily_SH3_domain	-	no_errors	MIA2	HGNC	ENSG00000150526	89	0	0.00	49	16	24.62	-	-	-
MLL2	0	genome.wustl.edu	37	12	49431434	49431434	+	Missense_Mutation	SNP	C	C	G			TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	12	49431434	49431434	C	G	SNP	MLL2	ENST00000301067	human	ensembl	69_37n	-1	known	missense	c.9705	p.K3235N	1.000	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Znf_RING,smart_HMG_superfamily,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	MLL2	HGNC	ENSG00000167548	102	0	0.00	89	29	24.58	-	-	-
NELL2	0	genome.wustl.edu	37	12	44914000	44914000	+	Missense_Mutation	SNP	C	C	G			TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	12	44914000	44914000	C	G	SNP	NELL2	ENST00000437801	human	ensembl	69_37n	-1	known	missense	c.2338	p.D780H	1.000	pfam_VWF_C,smart_VWC_out,smart_VWF_C,pfscan_VWF_C	pfam_EGF-like_Ca-bd,pfam_VWF_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,smart_VWC_out,smart_VWF_C,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom,pfscan_VWF_C	-	no_errors	NELL2	HGNC	ENSG00000184613	83	0	0.00	55	22	28.57	-	-	-
NEXN	0	genome.wustl.edu	37	1	78381798	78381798	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	1	78381798	78381798	G	A	SNP	NEXN	ENST00000334785	human	ensembl	69_37n	+1	known	missense	c.7	p.D3N	1.000	NULL	pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like	-	no_errors	NEXN	HGNC	ENSG00000162614	148	0	0.00	91	16	14.95	-	-	-
NHLRC1	0	genome.wustl.edu	37	6	18121699	18121699	+	Missense_Mutation	SNP	A	A	G			TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	6	18121699	18121699	A	G	SNP	NHLRC1	ENST00000340650	human	ensembl	69_37n	-1	known	missense	c.1139	p.L380P	1.000	pfscan_NHL_repeat_subgr	smart_Znf_RING,pfscan_NHL_repeat_subgr,pfscan_Znf_RING	-	no_errors	NHLRC1	HGNC	ENSG00000187566	103	0	0.00	58	27	31.76	-	-	-
NNT	0	genome.wustl.edu	37	5	43644857	43644857	+	Missense_Mutation	SNP	G	G	C			TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	5	43644857	43644857	G	C	SNP	NNT	ENST00000264663	human	ensembl	69_37n	+1	known	missense	c.1243	p.D415H	1.000	tigrfam_NADP_transhyd_a	pfam_NADH_DH_b,pfam_AlaDH/PNT_NAD(H)-bd,pfam_AlaDH/PNT_N,tigrfam_NADP_transhyd_a	-	no_errors	NNT	HGNC	ENSG00000112992	279	0	0.00	257	73	22.12	-	-	-
NOXO1	0	genome.wustl.edu	37	16	2029831	2029831	+	Silent	SNP	C	C	T			TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	16	2029831	2029831	C	T	SNP	NOXO1	ENST00000397280	human	ensembl	69_37n	-1	known	silent	c.675	p.P225	0.000	pfscan_SH3_domain	pfam_SH3_domain,pfam_Phox,superfamily_Phox,superfamily_SH3_domain,smart_SH3_domain,pfscan_Phox,pfscan_SH3_domain	-	no_errors	NOXO1	HGNC	ENSG00000196408	21	0	0.00	25	11	30.56	-	-	-
NPHS1	0	genome.wustl.edu	37	19	36322218	36322218	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	19	36322218	36322218	G	A	SNP	NPHS1	ENST00000378910	human	ensembl	69_37n	-1	known	missense	c.3367	p.R1123W	0.069	NULL	pfam_CD80_C2-set,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	NPHS1	HGNC	ENSG00000161270	70	0	0.00	52	16	23.19	-	-	-
NUP98	0	genome.wustl.edu	37	11	3707308	3707308	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	11	3707308	3707308	G	A	SNP	NUP98	ENST00000524563	human	ensembl	69_37n	-1	known	nonsense	c.514	p.Q172*	1.000	pfam_Nup96	pfam_Nup96	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	NUP98	HGNC	ENSG00000110713	122	0	0.00	103	13	11.21	-	-	-
ODZ1	0	genome.wustl.edu	37	X	123539084	123539084	+	Missense_Mutation	SNP	C	C	G			TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	X	123539084	123539084	C	G	SNP	ODZ1	ENST00000422452	human	ensembl	69_37n	-1	known	missense	c.5188	p.D1730H	1.000	NULL	pfam_Ten_N,pfam_EGF_extracell,superfamily_CarboxyPept-like_regulatory,smart_EGF-like,pfscan_EG-like_dom,tigrfam_YD	-	no_errors	ODZ1	HGNC	ENSG00000009694	108	0	0.00	95	37	28.03	-	-	-
PAN2	0	genome.wustl.edu	37	12	56718085	56718085	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	12	56718085	56718085	C	A	SNP	PAN2	ENST00000425394	human	ensembl	69_37n	-1	known	nonsense	c.1921	p.G641*	1.000	pfam_Peptidase_C19,pfscan_Peptidase_C19	pfam_Exonuclease_RNaseT/DNA_pol3,pfam_Peptidase_C19,superfamily_RNaseH-like_dom,superfamily_WD40_repeat_dom,smart_Exonuclease,pfscan_Peptidase_C19	-	no_errors	PAN2	HGNC	ENSG00000135473	183	0	0.00	145	34	18.99	-	-	-
PIK3CA	0	genome.wustl.edu	37	3	178936091	178936091	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	3	178936091	178936091	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	+1	known	missense	c.1633	p.E545K	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	260	0	0.00	172	58	25.22	-	-	-
PLEK	0	genome.wustl.edu	37	2	68607462	68607462	+	Silent	SNP	G	G	C			TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	2	68607462	68607462	G	C	SNP	PLEK	ENST00000234313	human	ensembl	69_37n	+1	known	silent	c.45	p.G15	0.795	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Pleckstrin_homology,pfam_DEP_dom,smart_Pleckstrin_homology,smart_DEP_dom,pfscan_DEP_dom,pfscan_Pleckstrin_homology	-	no_errors	PLEK	HGNC	ENSG00000115956	126	0	0.00	117	33	22.00	-	-	-
PPP1R21	0	genome.wustl.edu	37	2	48668100	48668100	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	2	48668100	48668100	C	A	SNP	PPP1R21	ENST00000294952	human	ensembl	69_37n	+1	known	nonsense	c.8	p.S3*	1.000	NULL	pfam_KLRAQ/TTKRSYEDQ_C,pfam_Unchr_KLRAQ/TTKRSYEDQ_N,superfamily_Ferritin/RR-like	-	no_errors	PPP1R21	HGNC	ENSG00000162869	27	0	0.00	31	10	23.81	-	-	-
RANBP6	0	genome.wustl.edu	37	9	6015273	6015273	+	Missense_Mutation	SNP	C	C	G			TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	9	6015273	6015273	C	G	SNP	RANBP6	ENST00000259569	human	ensembl	69_37n	-1	known	missense	c.335	p.S112T	1.000	superfamily_ARM-type_fold	pfam_HEAT,superfamily_ARM-type_fold	-	no_errors	RANBP6	HGNC	ENSG00000137040	137	0	0.00	130	54	29.35	-	-	-
RBFOX1	0	genome.wustl.edu	37	16	7568188	7568188	+	Missense_Mutation	SNP	C	C	A			TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	16	7568188	7568188	C	A	SNP	RBFOX1	ENST00000547372	human	ensembl	69_37n	+1	known	missense	c.196	p.Q66K	1.000	pirsf_RNA-bd_Fox-1	pfam_Fox-1_C_dom,pfam_RRM_dom,smart_RRM_dom,pirsf_RNA-bd_Fox-1,pfscan_RRM_dom	-	no_errors	RBFOX1	HGNC	ENSG00000078328	106	0	0.00	80	34	29.57	-	-	-
RIOK2	0	genome.wustl.edu	37	5	96503693	96503693	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	5	96503693	96503693	C	T	SNP	RIOK2	ENST00000283109	human	ensembl	69_37n	-1	known	missense	c.875	p.R292K	0.995	NULL	pfam_RIO-like_kinase,pfam_RIO2_kinase_winged_hlx_N,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_RIO_kinase	-	no_errors	RIOK2	HGNC	ENSG00000058729	40	0	0.00	31	5	13.89	-	-	-
RLF	0	genome.wustl.edu	37	1	40703390	40703390	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	1	40703390	40703390	G	A	SNP	RLF	ENST00000372771	human	ensembl	69_37n	+1	known	missense	c.3016	p.E1006K	0.992	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	RLF	HGNC	ENSG00000117000	104	0	0.00	177	104	36.88	-	-	-
RNF180	0	genome.wustl.edu	37	5	63621163	63621163	+	Missense_Mutation	SNP	C	C	A			TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	5	63621163	63621163	C	A	SNP	RNF180	ENST00000389100	human	ensembl	69_37n	+1	known	missense	c.1378	p.L460M	1.000	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF180	HGNC	ENSG00000164197	366	0	0.00	266	110	29.26	-	-	-
ROS1	0	genome.wustl.edu	37	6	117622168	117622168	+	Missense_Mutation	SNP	G	G	T			TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	6	117622168	117622168	G	T	SNP	ROS1	ENST00000368508	human	ensembl	69_37n	-1	known	missense	c.6702	p.N2234K	0.000	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_LDLR_classB_rpt,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom	-	no_errors	ROS1	HGNC	ENSG00000047936	231	0	0.00	178	47	20.89	-	-	-
RP9P	0	genome.wustl.edu	37	7	32961023	32961023	+	RNA	SNP	A	A	G			TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	7	32961023	32961023	A	G	SNP	RP9P	ENST00000381639	human	ensembl	69_37n	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RP9P	HGNC	ENSG00000205763	12	0	0.00	7	6	46.15	-	-	-
SCN1A	0	genome.wustl.edu	37	2	166859083	166859083	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	2	166859083	166859083	C	T	SNP	SCN1A	ENST00000303395	human	ensembl	69_37n	-1	known	missense	c.4183	p.D1395N	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,prints_Na_channel_a1su,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN1A	HGNC	ENSG00000144285	287	0	0.00	197	76	27.84	-	-	-
SEMA5A	0	genome.wustl.edu	37	5	9154769	9154769	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	5	9154769	9154769	G	A	SNP	SEMA5A	ENST00000382496	human	ensembl	69_37n	-1	known	nonsense	c.1312	p.Q438*	0.172	pfam_Semaphorin/CD100_Ag,superfamily_Semaphorin/CD100_Ag,smart_Semaphorin/CD100_Ag,pfscan_Semaphorin/CD100_Ag	pfam_Semaphorin/CD100_Ag,pfam_Thrombospondin_1_rpt,superfamily_Semaphorin/CD100_Ag,superfamily_Thrombospondin_1_rpt,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_Thrombospondin_1_rpt,pfscan_Semaphorin/CD100_Ag,pfscan_Thrombospondin_1_rpt	-	no_errors	SEMA5A	HGNC	ENSG00000112902	108	0	0.00	89	24	21.24	-	-	-
SLC37A2	0	genome.wustl.edu	37	11	124954753	124954753	+	Missense_Mutation	SNP	G	G	C			TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	11	124954753	124954753	G	C	SNP	SLC37A2	ENST00000298280	human	ensembl	69_37n	+1	known	missense	c.1072	p.D358H	0.453	pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC37A2	HGNC	ENSG00000134955	139	0	0.00	66	38	36.54	-	-	-
SLIT2	0	genome.wustl.edu	37	4	20541118	20541118	+	Silent	SNP	C	C	T			TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	4	20541118	20541118	C	T	SNP	SLIT2	ENST00000504154	human	ensembl	69_37n	+1	known	silent	c.1887	p.L629	0.807	smart_Leu-rich_rpt_typical-subtyp	pfam_EGF-like_dom,pfam_Laminin_G,pfam_Leu-rich_rpt,pfam_LRR-contain_N,pfam_Cys-rich_flank_reg_C,superfamily_ConA-like_lec_gl,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_EGF-like_Ca-bd,smart_EGF-like,smart_Fol_N,smart_Laminin_G,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	SLIT2	HGNC	ENSG00000145147	514	0	0.00	402	112	21.79	-	-	-
SSH3	0	genome.wustl.edu	37	11	67077640	67077640	+	Missense_Mutation	SNP	G	G	C			TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	11	67077640	67077640	G	C	SNP	SSH3	ENST00000308127	human	ensembl	69_37n	+1	known	missense	c.1513	p.E505Q	0.870	NULL	pfam_Dual-sp_phosphatase_cat-dom,pfam_DEK_C,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Tyr/Dual-specificity_Pase,pfscan_Dual-sp_phosphatase_subgr_cat	-	no_errors	SSH3	HGNC	ENSG00000172830	77	0	0.00	80	17	17.53	-	-	-
TBC1D24	0	genome.wustl.edu	37	16	2548280	2548280	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	16	2548280	2548280	C	A	SNP	TBC1D24	ENST00000293970	human	ensembl	69_37n	+1	known	nonsense	c.1025	p.S342*	1.000	smart_TLDc	pfam_TLDc,pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,smart_TLDc	-	no_errors	TBC1D24	HGNC	ENSG00000162065	87	0	0.00	68	25	26.88	-	-	-
TCF4	0	genome.wustl.edu	37	18	52899811	52899811	+	Silent	SNP	C	C	T			TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	18	52899811	52899811	C	T	SNP	TCF4	ENST00000398339	human	ensembl	69_37n	-1	known	silent	c.1884	p.T628	0.905	NULL	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_errors	TCF4	HGNC	ENSG00000196628	256	0	0.00	186	74	28.46	-	-	-
TNRC18	0	genome.wustl.edu	37	7	5410036	5410036	+	Missense_Mutation	SNP	C	C	G			TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	7	5410036	5410036	C	G	SNP	TNRC18	ENST00000399537	human	ensembl	69_37n	-1	known	missense	c.4189	p.E1397Q	1.000	NULL	pfam_BAH_dom,smart_BAH_dom,pfscan_BAH_dom	-	no_errors	TNRC18	HGNC	ENSG00000182095	107	0	0.00	104	26	20.00	-	-	-
TRAPPC2P1	0	genome.wustl.edu	37	19	57876384	57876384	+	Missense_Mutation	SNP	G	G	C			TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	19	57876384	57876384	G	C	SNP	TRAPPC2P1	ENST00000543226	human	ensembl	69_37n	+1	known	missense	c.183	p.L61F	1.000	pfam_Sedlin,superfamily_Longin-like_dom	pfam_Sedlin,pfam_Sybindin,superfamily_Longin-like_dom	-	no_errors	TRAPPC2P1	HGNC	ENSG00000256060	145	0	0.00	91	35	27.56	-	-	-
TSSK1B	0	genome.wustl.edu	37	5	112770420	112770420	+	Silent	SNP	C	C	T			TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	5	112770420	112770420	C	T	SNP	TSSK1B	ENST00000390666	human	ensembl	69_37n	-1	known	silent	c.117	p.A39	0.176	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	TSSK1B	HGNC	ENSG00000212122	125	0	0.00	96	44	31.43	-	-	-
USP45	0	genome.wustl.edu	37	6	99936655	99936655	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	6	99936655	99936655	C	T	SNP	USP45	ENST00000327681	human	ensembl	69_37n	-1	known	missense	c.520	p.E174K	1.000	NULL	pfam_Peptidase_C19,pfam_Znf_UBP,superfamily_Znf_FYVE_PHD,pfscan_Znf_UBP,pfscan_Peptidase_C19	-	no_errors	USP45	HGNC	ENSG00000123552	326	0	0.00	223	64	22.30	-	-	-
ZNF192	0	genome.wustl.edu	37	6	28120897	28120897	+	Missense_Mutation	SNP	A	A	T			TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	6	28120897	28120897	A	T	SNP	ZNF192	ENST00000330236	human	ensembl	69_37n	+1	known	missense	c.839	p.Q280L	0.118	pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF192	HGNC	ENSG00000198315	143	0	0.00	95	32	25.20	-	-	-
ZNF394	0	genome.wustl.edu	37	7	99091324	99091324	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	7	99091324	99091324	C	T	SNP	ZNF394	ENST00000337673	human	ensembl	69_37n	-1	known	missense	c.1514	p.R505H	0.158	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF394	HGNC	ENSG00000160908	404	0	0.00	370	116	23.87	-	-	-
