Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
ACSF2	0	genome.wustl.edu	37	17	48551936	48551936	+	RNA	SNP	G	G	A			TCGA-BH-A1ES-06A-12D-A243-09	TCGA-BH-A1ES-11A-33D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4c67368-9525-4d6f-8015-be7960045be1	b281f983-29fc-4389-bea2-cabf4c90b3df	17	48551936	48551936	G	A	SNP	ACSF2	ENST00000506085	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.012	-	-	-	no_errors	ACSF2	HGNC	ENSG00000167107	146	0	0.00	28	16	36.36	-	-	-
AKAP12	0	genome.wustl.edu	37	6	151674316	151674316	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BH-A1ES-06A-12D-A243-09	TCGA-BH-A1ES-11A-33D-A135-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4c67368-9525-4d6f-8015-be7960045be1	b281f983-29fc-4389-bea2-cabf4c90b3df	6	151674316	151674316	A	-	DEL	AKAP12	ENST00000253332	human	ensembl	69_37n	+1	known	frame_shift_del	c.4790	p.G1598fs	0.001	NULL	pfam_Pkinase-A_anch_WSK-motif,pfam_RII_binding_1	-	no_errors	AKAP12	HGNC	ENSG00000131016	133	0	0.00	13	2	13.33	-	-	-
AMOTL1	0	genome.wustl.edu	37	11	94532696	94532696	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A1ES-06A-12D-A243-09	TCGA-BH-A1ES-11A-33D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4c67368-9525-4d6f-8015-be7960045be1	b281f983-29fc-4389-bea2-cabf4c90b3df	11	94532696	94532696	G	A	SNP	AMOTL1	ENST00000433060	human	ensembl	69_37n	+1	known	missense	c.340	p.E114K	0.999	NULL	pfam_Angiomotin_C,prints_Angiomotin	-	no_errors	AMOTL1	HGNC	ENSG00000166025	97	0	0.00	26	5	16.13	-	-	-
ANKRD20A5P	0	genome.wustl.edu	37	18	14179217	14179217	+	RNA	DEL	A	A	-			TCGA-BH-A1ES-06A-12D-A243-09	TCGA-BH-A1ES-11A-33D-A135-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4c67368-9525-4d6f-8015-be7960045be1	b281f983-29fc-4389-bea2-cabf4c90b3df	18	14179217	14179217	A	-	DEL	ANKRD20A5P	ENST00000581181	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	ANKRD20A5P	HGNC	ENSG00000186481	19	0	0.00	0	2	40.00	-	-	-
ARHGEF19	0	genome.wustl.edu	37	1	16532853	16532853	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A1ES-06A-12D-A243-09	TCGA-BH-A1ES-11A-33D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4c67368-9525-4d6f-8015-be7960045be1	b281f983-29fc-4389-bea2-cabf4c90b3df	1	16532853	16532853	C	T	SNP	ARHGEF19	ENST00000441785	human	ensembl	69_37n	-1	known	missense	c.169	p.V57M	0.000	superfamily_DH-domain	pfam_DH-domain,superfamily_DH-domain,pfscan_DH-domain	-	no_start_codon	ARHGEF19	HGNC	ENSG00000142632	52	0	0.00	45	15	24.59	-	-	-
C17orf49	0	genome.wustl.edu	37	17	6920583	6920583	+	Silent	SNP	G	G	A			TCGA-BH-A1ES-06A-12D-A243-09	TCGA-BH-A1ES-11A-33D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4c67368-9525-4d6f-8015-be7960045be1	b281f983-29fc-4389-bea2-cabf4c90b3df	17	6920583	6920583	G	A	SNP	C17orf49	ENST00000546495	human	ensembl	69_37n	+1	known	silent	c.522	p.L174	1.000	NULL	superfamily_Homeodomain-like	-	no_errors	C17orf49	Clone_based_vega_gene	ENSG00000258315	385	0	0.00	19	3	13.64	-	-	-
C19orf42	0	genome.wustl.edu	37	19	16770904	16770904	+	Silent	SNP	C	C	T			TCGA-BH-A1ES-06A-12D-A243-09	TCGA-BH-A1ES-11A-33D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4c67368-9525-4d6f-8015-be7960045be1	b281f983-29fc-4389-bea2-cabf4c90b3df	19	16770904	16770904	C	T	SNP	C19orf42	ENST00000487803	human	ensembl	69_37n	-1	known	silent	c.18	p.L6	1.000	NULL	NULL	-	no_errors	C19orf42	HGNC	ENSG00000214046	43	0	0.00	28	4	12.50	-	-	-
C1orf54	0	genome.wustl.edu	37	1	150248171	150248171	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A1ES-06A-12D-A243-09	TCGA-BH-A1ES-11A-33D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4c67368-9525-4d6f-8015-be7960045be1	b281f983-29fc-4389-bea2-cabf4c90b3df	1	150248171	150248171	C	T	SNP	C1orf54	ENST00000369099	human	ensembl	69_37n	+1	known	missense	c.152	p.T51I	1.000	NULL	NULL	-	no_errors	C1orf54	HGNC	ENSG00000118292	376	0	0.00	85	11	11.46	-	-	-
CDS1	0	genome.wustl.edu	37	4	85530598	85530598	+	Missense_Mutation	SNP	A	A	G			TCGA-BH-A1ES-06A-12D-A243-09	TCGA-BH-A1ES-11A-33D-A135-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4c67368-9525-4d6f-8015-be7960045be1	b281f983-29fc-4389-bea2-cabf4c90b3df	4	85530598	85530598	A	G	SNP	CDS1	ENST00000295887	human	ensembl	69_37n	+1	known	missense	c.262	p.I88V	1.000	pfam_PC_trans,pirsf_PC_Trfase_euk	pfam_PC_trans,pirsf_PC_Trfase_euk	-	no_errors	CDS1	HGNC	ENSG00000163624	619	0	0.00	45	16	26.23	-	-	-
CHST3	0	genome.wustl.edu	37	10	73767932	73767932	+	Silent	SNP	G	G	A			TCGA-BH-A1ES-06A-12D-A243-09	TCGA-BH-A1ES-11A-33D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4c67368-9525-4d6f-8015-be7960045be1	b281f983-29fc-4389-bea2-cabf4c90b3df	10	73767932	73767932	G	A	SNP	CHST3	ENST00000373115	human	ensembl	69_37n	+1	known	silent	c.1143	p.K381	1.000	pfam_Sulfotransferase_dom,pirsf_Carbohydrate_sulfotransferase	pfam_Sulfotransferase_dom,pirsf_Carbohydrate_sulfotransferase	-	no_errors	CHST3	HGNC	ENSG00000122863	9	0	0.00	25	6	19.35	-	-	-
COTL1	0	genome.wustl.edu	37	16	84600388	84600388	+	RNA	SNP	G	G	A			TCGA-BH-A1ES-06A-12D-A243-09	TCGA-BH-A1ES-11A-33D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4c67368-9525-4d6f-8015-be7960045be1	b281f983-29fc-4389-bea2-cabf4c90b3df	16	84600388	84600388	G	A	SNP	COTL1	ENST00000567278	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	COTL1	HGNC	ENSG00000103187	74	0	0.00	47	15	24.19	-	-	-
CRIPAK	0	genome.wustl.edu	37	4	1388635	1388635	+	Silent	SNP	T	T	C			TCGA-BH-A1ES-06A-12D-A243-09	TCGA-BH-A1ES-11A-33D-A135-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4c67368-9525-4d6f-8015-be7960045be1	b281f983-29fc-4389-bea2-cabf4c90b3df	4	1388635	1388635	T	C	SNP	CRIPAK	ENST00000324803	human	ensembl	69_37n	+1	known	silent	c.336	p.C112	0.008	smart_Post-SET_dom	smart_Post-SET_dom	-	no_errors	CRIPAK	HGNC	ENSG00000179979	99	1	1.00	127	32	20.13	-	-	-
CTH	0	genome.wustl.edu	37	1	70904845	70904845	+	RNA	DEL	G	G	-			TCGA-BH-A1ES-06A-12D-A243-09	TCGA-BH-A1ES-11A-33D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4c67368-9525-4d6f-8015-be7960045be1	b281f983-29fc-4389-bea2-cabf4c90b3df	1	70904845	70904845	G	-	DEL	CTH	ENST00000482383	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	CTH	HGNC	ENSG00000116761	213	0	0.00	16	2	11.11	-	-	-
CYB5A	0	genome.wustl.edu	37	18	71930670	71930670	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A1ES-06A-12D-A243-09	TCGA-BH-A1ES-11A-33D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4c67368-9525-4d6f-8015-be7960045be1	b281f983-29fc-4389-bea2-cabf4c90b3df	18	71930670	71930670	C	T	SNP	CYB5A	ENST00000340533	human	ensembl	69_37n	-1	known	missense	c.172	p.D58N	1.000	pfam_Cyt_B5,superfamily_Cyt_B5,prints_Cyt_B5,pfscan_Cyt_B5	pfam_Cyt_B5,superfamily_Cyt_B5,prints_Cyt_B5,pfscan_Cyt_B5	-	no_errors	CYB5A	HGNC	ENSG00000166347	250	0	0.00	29	4	12.12	-	-	-
DMXL1	0	genome.wustl.edu	37	5	118465089	118465089	+	Missense_Mutation	SNP	C	C	A			TCGA-BH-A1ES-06A-12D-A243-09	TCGA-BH-A1ES-11A-33D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4c67368-9525-4d6f-8015-be7960045be1	b281f983-29fc-4389-bea2-cabf4c90b3df	5	118465089	118465089	C	A	SNP	DMXL1	ENST00000539542	human	ensembl	69_37n	+1	known	missense	c.1286	p.S429Y	0.615	superfamily_WD40_repeat_dom	pfam_Rav1p_C,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DMXL1	HGNC	ENSG00000172869	124	0	0.00	34	8	18.60	-	-	-
DYNC1H1	0	genome.wustl.edu	37	14	102500367	102500367	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BH-A1ES-06A-12D-A243-09	TCGA-BH-A1ES-11A-33D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4c67368-9525-4d6f-8015-be7960045be1	b281f983-29fc-4389-bea2-cabf4c90b3df	14	102500367	102500367	G	T	SNP	DYNC1H1	ENST00000360184	human	ensembl	69_37n	+1	known	nonsense	c.10468	p.E3490*	1.000	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_Thioredoxin-like_fold,superfamily_Glutathione-S-Trfase_C-like,smart_AAA+_ATPase	-	no_errors	DYNC1H1	HGNC	ENSG00000197102	180	0	0.00	30	4	11.76	-	-	-
EPHA6	0	genome.wustl.edu	37	3	96706581	96706581	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A1ES-06A-12D-A243-09	TCGA-BH-A1ES-11A-33D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4c67368-9525-4d6f-8015-be7960045be1	b281f983-29fc-4389-bea2-cabf4c90b3df	3	96706581	96706581	G	A	SNP	EPHA6	ENST00000506569	human	ensembl	69_37n	+1	putative	missense	c.691	p.G231S	0.977	pfam_Ephrin_rcpt_lig-bd_dom,superfamily_Galactose-bd-like,smart_Ephrin_rcpt_lig-bd_dom	pfam_Ephrin_rcpt_lig-bd_dom,superfamily_Galactose-bd-like,smart_Ephrin_rcpt_lig-bd_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	EPHA6	HGNC	ENSG00000080224	204	0	0.00	17	9	34.62	-	-	-
FAM157B	0	genome.wustl.edu	37	9	141107536	141107537	+	RNA	INS	-	-	GCA			TCGA-BH-A1ES-06A-12D-A243-09	TCGA-BH-A1ES-11A-33D-A135-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4c67368-9525-4d6f-8015-be7960045be1	b281f983-29fc-4389-bea2-cabf4c90b3df	9	141107536	141107537	-	GCA	INS	FAM157B	ENST00000446912	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.033:0.036	-	-	-	no_errors	FAM157B	HGNC	ENSG00000233013	70	0	0.00	48	19	28.36	-	-	-
FAM157C	0	genome.wustl.edu	37	16	90168691	90168691	+	RNA	SNP	G	G	A			TCGA-BH-A1ES-06A-12D-A243-09	TCGA-BH-A1ES-11A-33D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4c67368-9525-4d6f-8015-be7960045be1	b281f983-29fc-4389-bea2-cabf4c90b3df	16	90168691	90168691	G	A	SNP	FAM157C	ENST00000563357	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.006	-	-	-	no_errors	FAM157C	HGNC	ENSG00000260528	72	0	0.00	88	14	13.73	-	-	-
GALNT10	0	genome.wustl.edu	37	5	153789185	153789185	+	Missense_Mutation	SNP	G	G	T			TCGA-BH-A1ES-06A-12D-A243-09	TCGA-BH-A1ES-11A-33D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4c67368-9525-4d6f-8015-be7960045be1	b281f983-29fc-4389-bea2-cabf4c90b3df	5	153789185	153789185	G	T	SNP	GALNT10	ENST00000297107	human	ensembl	69_37n	+1	known	missense	c.1249	p.A417S	0.672	NULL	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT10	HGNC	ENSG00000164574	135	0	0.00	35	4	10.26	-	-	-
GPR112	0	genome.wustl.edu	37	X	135430311	135430311	+	Silent	SNP	C	C	A			TCGA-BH-A1ES-06A-12D-A243-09	TCGA-BH-A1ES-11A-33D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4c67368-9525-4d6f-8015-be7960045be1	b281f983-29fc-4389-bea2-cabf4c90b3df	X	135430311	135430311	C	A	SNP	GPR112	ENST00000370652	human	ensembl	69_37n	+1	known	silent	c.4446	p.S1482	0.001	NULL	pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_Pentaxin,superfamily_ConA-like_lec_gl,smart_Pentaxin,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	GPR112	HGNC	ENSG00000156920	58	0	0.00	54	11	16.92	-	-	-
IL21R	0	genome.wustl.edu	37	16	27457410	27457411	+	Splice_Site	DEL	GT	GT	-			TCGA-BH-A1ES-06A-12D-A243-09	TCGA-BH-A1ES-11A-33D-A135-09	GT	GT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4c67368-9525-4d6f-8015-be7960045be1	b281f983-29fc-4389-bea2-cabf4c90b3df	16	27457410	27457411	GT	-	DEL	IL21R	ENST00000337929	human	ensembl	69_37n	+1	known	splice_site_del	c.867+1_867+1	e7+1	1.000:0.992	-	-	-	no_errors	IL21R	HGNC	ENSG00000103522	56	0	0.00	17	2	10.53	-	-	-
KRTAP5-2	0	genome.wustl.edu	37	11	1619181	1619181	+	Silent	SNP	G	G	A			TCGA-BH-A1ES-06A-12D-A243-09	TCGA-BH-A1ES-11A-33D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4c67368-9525-4d6f-8015-be7960045be1	b281f983-29fc-4389-bea2-cabf4c90b3df	11	1619181	1619181	G	A	SNP	KRTAP5-2	ENST00000412090	human	ensembl	69_37n	-1	known	silent	c.300	p.S100	0.053	NULL	NULL	-	no_errors	KRTAP5-2	HGNC	ENSG00000205867	102	0	0.00	66	8	10.81	-	-	-
KRTAP5-2	0	genome.wustl.edu	37	11	1619184	1619184	+	Silent	SNP	G	G	A			TCGA-BH-A1ES-06A-12D-A243-09	TCGA-BH-A1ES-11A-33D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4c67368-9525-4d6f-8015-be7960045be1	b281f983-29fc-4389-bea2-cabf4c90b3df	11	1619184	1619184	G	A	SNP	KRTAP5-2	ENST00000412090	human	ensembl	69_37n	-1	known	silent	c.297	p.G99	0.365	NULL	NULL	-	no_errors	KRTAP5-2	HGNC	ENSG00000205867	90	0	0.00	58	11	15.94	-	-	-
MGAM	0	genome.wustl.edu	37	7	141794263	141794263	+	Silent	SNP	A	A	G			TCGA-BH-A1ES-06A-12D-A243-09	TCGA-BH-A1ES-11A-33D-A135-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4c67368-9525-4d6f-8015-be7960045be1	b281f983-29fc-4389-bea2-cabf4c90b3df	7	141794263	141794263	A	G	SNP	MGAM	ENST00000475668	human	ensembl	69_37n	+1	putative	silent	c.7275	p.T2425	0.003	pfam_Glyco_hydro_31,superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_31,pfam_P_trefoil,superfamily_Glycoside_hydrolase_SF,superfamily_Glyco_hydro-type_carb-bd,smart_P_trefoil	-	no_errors	MGAM	HGNC	ENSG00000257335	57	0	0.00	35	5	12.50	-	-	-
MUC3A	0	genome.wustl.edu	37	7	100552549	100552549	+	Missense_Mutation	SNP	C	C	A			TCGA-BH-A1ES-06A-12D-A243-09	TCGA-BH-A1ES-11A-33D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4c67368-9525-4d6f-8015-be7960045be1	b281f983-29fc-4389-bea2-cabf4c90b3df	7	100552549	100552549	C	A	SNP	MUC3A	ENST00000319509	human	ensembl	69_37n	+1	known	missense	c.1300	p.L434I	0.020	NULL	pfam_SEA,smart_EGF-like,smart_SEA,pfscan_EG-like_dom,pfscan_SEA	-	no_start_codon	MUC3A	HGNC	ENSG00000169894	9	0	0.00	30	7	18.92	-	-	-
NASP	0	genome.wustl.edu	37	1	46073222	46073222	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BH-A1ES-06A-12D-A243-09	TCGA-BH-A1ES-11A-33D-A135-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4c67368-9525-4d6f-8015-be7960045be1	b281f983-29fc-4389-bea2-cabf4c90b3df	1	46073222	46073222	A	-	DEL	NASP	ENST00000402363	human	ensembl	69_37n	+1	known	frame_shift_del	c.645	p.G217fs	0.076	NULL	pfam_Tetratricopeptide_SHNi-TPR_dom,pfam_TPR-1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	NASP	HGNC	ENSG00000132780	77	0	0.00	56	8	12.50	-	-	-
NLRP2	0	genome.wustl.edu	37	19	55501622	55501622	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A1ES-06A-12D-A243-09	TCGA-BH-A1ES-11A-33D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4c67368-9525-4d6f-8015-be7960045be1	b281f983-29fc-4389-bea2-cabf4c90b3df	19	55501622	55501622	G	A	SNP	NLRP2	ENST00000543277	human	ensembl	69_37n	+1	known	missense	c.225	p.M75I	0.000	NULL	NULL	-	no_start_codon	NLRP2	HGNC	ENSG00000022556	90	0	0.00	21	6	22.22	-	-	-
NPTX1	0	genome.wustl.edu	37	17	78447237	78447237	+	Missense_Mutation	SNP	T	T	G			TCGA-BH-A1ES-06A-12D-A243-09	TCGA-BH-A1ES-11A-33D-A135-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4c67368-9525-4d6f-8015-be7960045be1	b281f983-29fc-4389-bea2-cabf4c90b3df	17	78447237	78447237	T	G	SNP	NPTX1	ENST00000306773	human	ensembl	69_37n	-1	known	missense	c.660	p.K220N	0.989	NULL	pfam_Pentaxin,superfamily_ConA-like_lec_gl,smart_Pentaxin,prints_Pentaxin	-	no_errors	NPTX1	HGNC	ENSG00000171246	166	0	0.00	75	9	10.71	-	-	-
ODZ1	0	genome.wustl.edu	37	X	123554275	123554275	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BH-A1ES-06A-12D-A243-09	TCGA-BH-A1ES-11A-33D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4c67368-9525-4d6f-8015-be7960045be1	b281f983-29fc-4389-bea2-cabf4c90b3df	X	123554275	123554275	C	-	DEL	ODZ1	ENST00000422452	human	ensembl	69_37n	-1	known	frame_shift_del	c.4868	p.G1623fs	0.993	NULL	pfam_Ten_N,pfam_EGF_extracell,superfamily_CarboxyPept-like_regulatory,smart_EGF-like,pfscan_EG-like_dom,tigrfam_YD	-	no_errors	ODZ1	HGNC	ENSG00000009694	95	0	0.00	38	5	11.63	-	-	-
OR4C13	0	genome.wustl.edu	37	11	49974289	49974289	+	Missense_Mutation	SNP	C	C	A			TCGA-BH-A1ES-06A-12D-A243-09	TCGA-BH-A1ES-11A-33D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4c67368-9525-4d6f-8015-be7960045be1	b281f983-29fc-4389-bea2-cabf4c90b3df	11	49974289	49974289	C	A	SNP	OR4C13	ENST00000555099	human	ensembl	69_37n	+1	known	missense	c.315	p.F105L	0.006	pfam_7TM_GPCR_Rhodpsn,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR4C13	HGNC	ENSG00000258817	271	1	0.37	79	22	21.78	-	-	-
PCDHB12	0	genome.wustl.edu	37	5	140590635	140590635	+	Missense_Mutation	SNP	C	C	A			TCGA-BH-A1ES-06A-12D-A243-09	TCGA-BH-A1ES-11A-33D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4c67368-9525-4d6f-8015-be7960045be1	b281f983-29fc-4389-bea2-cabf4c90b3df	5	140590635	140590635	C	A	SNP	PCDHB12	ENST00000239450	human	ensembl	69_37n	+1	known	missense	c.2156	p.A719E	0.002	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB12	HGNC	ENSG00000120328	56	0	0.00	111	25	18.38	-	-	-
PKN1	0	genome.wustl.edu	37	19	14578443	14578443	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A1ES-06A-12D-A243-09	TCGA-BH-A1ES-11A-33D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4c67368-9525-4d6f-8015-be7960045be1	b281f983-29fc-4389-bea2-cabf4c90b3df	19	14578443	14578443	G	A	SNP	PKN1	ENST00000342216	human	ensembl	69_37n	+1	known	missense	c.1816	p.A606T	0.225	NULL	pfam_Prot_kinase_cat_dom,pfam_HR1_rho-bd,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_HR1_rho-bd,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_HR1_rho-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Prot_kinase_cat_dom	-	no_errors	PKN1	HGNC	ENSG00000123143	79	0	0.00	26	5	16.13	-	-	-
PNLDC1	0	genome.wustl.edu	37	6	160225641	160225641	+	Missense_Mutation	SNP	A	A	G			TCGA-BH-A1ES-06A-12D-A243-09	TCGA-BH-A1ES-11A-33D-A135-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4c67368-9525-4d6f-8015-be7960045be1	b281f983-29fc-4389-bea2-cabf4c90b3df	6	160225641	160225641	A	G	SNP	PNLDC1	ENST00000275275	human	ensembl	69_37n	+1	known	missense	c.400	p.I134V	0.967	pfam_RNase_CAF1,superfamily_RNaseH-like_dom	pfam_RNase_CAF1,superfamily_RNaseH-like_dom	-	no_errors	PNLDC1	HGNC	ENSG00000146453	303	0	0.00	101	18	15.13	-	-	-
POU5F1	0	genome.wustl.edu	37	6	31132414	31132414	+	Silent	SNP	G	G	A			TCGA-BH-A1ES-06A-12D-A243-09	TCGA-BH-A1ES-11A-33D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4c67368-9525-4d6f-8015-be7960045be1	b281f983-29fc-4389-bea2-cabf4c90b3df	6	31132414	31132414	G	A	SNP	POU5F1	ENST00000259915	human	ensembl	69_37n	-1	known	silent	c.1047	p.S349	0.565	NULL	pfam_POU_specific,pfam_Homeodomain,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_POU_specific,smart_Homeodomain,pfscan_Homeodomain,pfscan_POU_specific,prints_POU	-	no_errors	POU5F1	HGNC	ENSG00000204531	75	0	0.00	34	4	10.53	-	-	-
RASSF1	0	genome.wustl.edu	37	3	50369009	50369009	+	Silent	SNP	G	G	A			TCGA-BH-A1ES-06A-12D-A243-09	TCGA-BH-A1ES-11A-33D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4c67368-9525-4d6f-8015-be7960045be1	b281f983-29fc-4389-bea2-cabf4c90b3df	3	50369009	50369009	G	A	SNP	RASSF1	ENST00000357043	human	ensembl	69_37n	-1	known	silent	c.753	p.R251	1.000	pfam_Ras-assoc,smart_Ras-assoc,pfscan_Ras-assoc	pfam_Ras-assoc,pfam_Prot_Kinase_C-like_PE/DAG-bd,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Ras-assoc,pfscan_Ras-assoc,pfscan_SARAH,pfscan_Prot_Kinase_C-like_PE/DAG-bd	-	no_errors	RASSF1	HGNC	ENSG00000068028	58	0	0.00	20	7	25.93	-	-	-
RBMX	0	genome.wustl.edu	37	X	135956107	135956107	+	RNA	SNP	G	G	A			TCGA-BH-A1ES-06A-12D-A243-09	TCGA-BH-A1ES-11A-33D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4c67368-9525-4d6f-8015-be7960045be1	b281f983-29fc-4389-bea2-cabf4c90b3df	X	135956107	135956107	G	A	SNP	RBMX	ENST00000496459	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.702	-	-	-	no_errors	RBMX	HGNC	ENSG00000147274	9	0	0.00	33	19	36.54	-	-	-
RETSAT	0	genome.wustl.edu	37	2	85573033	85573033	+	Silent	SNP	G	G	A			TCGA-BH-A1ES-06A-12D-A243-09	TCGA-BH-A1ES-11A-33D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4c67368-9525-4d6f-8015-be7960045be1	b281f983-29fc-4389-bea2-cabf4c90b3df	2	85573033	85573033	G	A	SNP	RETSAT	ENST00000438611	human	ensembl	69_37n	-1	known	silent	c.283	p.L95	0.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	RETSAT	HGNC	ENSG00000042445	56	0	0.00	32	4	11.11	-	-	-
RFC1	0	genome.wustl.edu	37	4	39297368	39297368	+	Silent	SNP	G	G	A			TCGA-BH-A1ES-06A-12D-A243-09	TCGA-BH-A1ES-11A-33D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4c67368-9525-4d6f-8015-be7960045be1	b281f983-29fc-4389-bea2-cabf4c90b3df	4	39297368	39297368	G	A	SNP	RFC1	ENST00000381897	human	ensembl	69_37n	-1	known	silent	c.2823	p.A941	0.996	pfam_DNA_replication_fac_RFC1_C,superfamily_DNA_pol3_clamp-load_cplx_C,pirsf_DNA_replication_fac_C_lsu	pfam_DNA_replication_fac_RFC1_C,pfam_BRCT_dom,pfam_ATPase_AAA_core,superfamily_DNA_pol3_clamp-load_cplx_C,superfamily_BRCT_dom,smart_BRCT_dom,smart_AAA+_ATPase,pirsf_DNA_replication_fac_C_lsu,pfscan_BRCT_dom	-	no_errors	RFC1	HGNC	ENSG00000035928	133	0	0.00	34	4	10.53	-	-	-
SH3KBP1	0	genome.wustl.edu	37	X	19560045	19560045	+	Missense_Mutation	SNP	C	C	A			TCGA-BH-A1ES-06A-12D-A243-09	TCGA-BH-A1ES-11A-33D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4c67368-9525-4d6f-8015-be7960045be1	b281f983-29fc-4389-bea2-cabf4c90b3df	X	19560045	19560045	C	A	SNP	SH3KBP1	ENST00000397821	human	ensembl	69_37n	-1	known	missense	c.1890	p.Q630H	1.000	NULL	pfam_SH3_2,pfam_SH3_domain,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,prints_p67phox,prints_SH3_domain,prints_Spectrin_alpha_SH3	-	no_errors	SH3KBP1	HGNC	ENSG00000147010	78	0	0.00	75	24	24.24	-	-	-
SLC45A4	0	genome.wustl.edu	37	8	142222352	142222352	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A1ES-06A-12D-A243-09	TCGA-BH-A1ES-11A-33D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4c67368-9525-4d6f-8015-be7960045be1	b281f983-29fc-4389-bea2-cabf4c90b3df	8	142222352	142222352	C	T	SNP	SLC45A4	ENST00000517878	human	ensembl	69_37n	-1	known	missense	c.2245	p.V749M	0.000	NULL	superfamily_MFS_dom_general_subst_transpt	-	no_errors	SLC45A4	HGNC	ENSG00000022567	25	0	0.00	44	8	15.38	-	-	-
SRL	0	genome.wustl.edu	37	16	4242562	4242562	+	Silent	SNP	G	G	A			TCGA-BH-A1ES-06A-12D-A243-09	TCGA-BH-A1ES-11A-33D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4c67368-9525-4d6f-8015-be7960045be1	b281f983-29fc-4389-bea2-cabf4c90b3df	16	4242562	4242562	G	A	SNP	SRL	ENST00000399609	human	ensembl	69_37n	-1	known	silent	c.1014	p.I338	1.000	NULL	pfam_Dynamin_GTPase,pfam_GTP_binding_domain	-	no_errors	SRL	HGNC	ENSG00000185739	190	1	0.52	101	16	13.68	-	-	-
TBP	0	genome.wustl.edu	37	6	170871004	170871004	+	Silent	SNP	G	G	A			TCGA-BH-A1ES-06A-12D-A243-09	TCGA-BH-A1ES-11A-33D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4c67368-9525-4d6f-8015-be7960045be1	b281f983-29fc-4389-bea2-cabf4c90b3df	6	170871004	170871004	G	A	SNP	TBP	ENST00000230354	human	ensembl	69_37n	+1	known	silent	c.180	p.Q60	0.991	NULL	pfam_TBP,prints_TBP	-	no_errors	TBP	HGNC	ENSG00000112592	44	0	0.00	41	6	12.77	-	-	-
TBP	0	genome.wustl.edu	37	6	170871052	170871052	+	Silent	SNP	G	G	A			TCGA-BH-A1ES-06A-12D-A243-09	TCGA-BH-A1ES-11A-33D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4c67368-9525-4d6f-8015-be7960045be1	b281f983-29fc-4389-bea2-cabf4c90b3df	6	170871052	170871052	G	A	SNP	TBP	ENST00000230354	human	ensembl	69_37n	+1	known	silent	c.228	p.Q76	0.994	NULL	pfam_TBP,prints_TBP	-	no_errors	TBP	HGNC	ENSG00000112592	27	0	0.00	23	20	45.45	-	-	-
THOC5	0	genome.wustl.edu	37	22	29907214	29907214	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BH-A1ES-06A-12D-A243-09	TCGA-BH-A1ES-11A-33D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4c67368-9525-4d6f-8015-be7960045be1	b281f983-29fc-4389-bea2-cabf4c90b3df	22	29907214	29907214	G	-	DEL	THOC5	ENST00000397871	human	ensembl	69_37n	-1	known	frame_shift_del	c.1869	p.N624fs	1.000	NULL	pfam_THO_Thoc5	-	no_errors	THOC5	HGNC	ENSG00000100296	73	0	0.00	13	2	13.33	-	-	-
TRIM60	0	genome.wustl.edu	37	4	165962604	165962604	+	Silent	SNP	T	T	C			TCGA-BH-A1ES-06A-12D-A243-09	TCGA-BH-A1ES-11A-33D-A135-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4c67368-9525-4d6f-8015-be7960045be1	b281f983-29fc-4389-bea2-cabf4c90b3df	4	165962604	165962604	T	C	SNP	TRIM60	ENST00000341062	human	ensembl	69_37n	+1	known	silent	c.1380	p.P460	0.051	superfamily_ConA-like_lec_gl,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY	pfam_SPRY_rcpt,pfam_Znf_C3HC4_RING-type,pfam_Znf_B-box,superfamily_ConA-like_lec_gl,smart_Znf_RING,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM60	HGNC	ENSG00000176979	169	0	0.00	45	7	13.46	-	-	-
TULP3	0	genome.wustl.edu	37	12	3040227	3040227	+	Missense_Mutation	SNP	A	A	C			TCGA-BH-A1ES-06A-12D-A243-09	TCGA-BH-A1ES-11A-33D-A135-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4c67368-9525-4d6f-8015-be7960045be1	b281f983-29fc-4389-bea2-cabf4c90b3df	12	3040227	3040227	A	C	SNP	TULP3	ENST00000228245	human	ensembl	69_37n	+1	known	missense	c.517	p.T173P	0.000	NULL	pfam_Tubby_C,superfamily_Tubby_C-like,prints_Tubby_C,prints_Tubby_N	-	no_errors	TULP3	HGNC	ENSG00000078246	106	1	0.93	52	10	15.87	-	-	-
ZC3H13	0	genome.wustl.edu	37	13	46616352	46616352	+	Missense_Mutation	SNP	C	C	A			TCGA-BH-A1ES-06A-12D-A243-09	TCGA-BH-A1ES-11A-33D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4c67368-9525-4d6f-8015-be7960045be1	b281f983-29fc-4389-bea2-cabf4c90b3df	13	46616352	46616352	C	A	SNP	ZC3H13	ENST00000242848	human	ensembl	69_37n	-1	known	missense	c.286	p.V96L	1.000	NULL	pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	ZC3H13	HGNC	ENSG00000123200	309	0	0.00	48	7	12.73	-	-	-
ZNF208	0	genome.wustl.edu	37	19	22156863	22156863	+	Missense_Mutation	SNP	C	C	A			TCGA-BH-A1ES-06A-12D-A243-09	TCGA-BH-A1ES-11A-33D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4c67368-9525-4d6f-8015-be7960045be1	b281f983-29fc-4389-bea2-cabf4c90b3df	19	22156863	22156863	C	A	SNP	ZNF208	ENST00000397126	human	ensembl	69_37n	-1	known	missense	c.973	p.V325F	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF208	HGNC	ENSG00000160321	71	0	0.00	21	5	19.23	-	-	-
ZNF799	0	genome.wustl.edu	37	19	12501969	12501970	+	Frame_Shift_Del	DEL	GA	GA	-			TCGA-BH-A1ES-06A-12D-A243-09	TCGA-BH-A1ES-11A-33D-A135-09	GA	GA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e4c67368-9525-4d6f-8015-be7960045be1	b281f983-29fc-4389-bea2-cabf4c90b3df	19	12501969	12501970	GA	-	DEL	ZNF799	ENST00000430385	human	ensembl	69_37n	-1	known	frame_shift_del	c.1243_1242	p.T416fs	0.990:0.062	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF799	HGNC	ENSG00000196466	233	0	0.00	64	8	11.11	-	-	-
