Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
ACTA2	0	genome.wustl.edu	37	10	90708572	90708572	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	10	90708572	90708572	C	T	SNP	ACTA2	ENST00000224784	human	ensembl	69_37n	-1	known	missense	c.116	p.R39H	1.000	pfam_Actin-like,smart_Actin-like	pfam_Actin-like,smart_Actin-like,prints_Actin-like	-	no_errors	ACTA2	HGNC	ENSG00000107796	30	0	0.00	17	9	34.62	-	-	-
ALOX15B	0	genome.wustl.edu	37	17	7942523	7942523	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	17	7942523	7942523	G	A	SNP	ALOX15B	ENST00000380183	human	ensembl	69_37n	+1	known	missense	c.50	p.G17D	0.991	pfam_LipOase_LH2,superfamily_Lipase_LipOase,smart_LipOase_LH2,pfscan_LipOase_LH2,prints_LipOase_mml	pfam_LipOase_C,pfam_LipOase_LH2,superfamily_LipOase_C,superfamily_Lipase_LipOase,smart_LipOase_LH2,pfscan_LipOase_LH2,prints_LipOase_mml,prints_LipOase_C	-	no_errors	ALOX15B	HGNC	ENSG00000179593	39	0	0.00	16	10	38.46	-	-	-
ASPH	0	genome.wustl.edu	37	8	62460693	62460693	+	Silent	SNP	C	C	T			TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	8	62460693	62460693	C	T	SNP	ASPH	ENST00000379454	human	ensembl	69_37n	-1	known	silent	c.1701	p.V567	0.996	NULL	pfam_Asp-B-hydro/Triadin_dom,pfam_Asp_Arg_b-Hydrxlase,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	ASPH	HGNC	ENSG00000198363	74	0	0.00	43	19	30.65	-	-	-
ATN1	0	genome.wustl.edu	37	12	7045008	7045008	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	12	7045008	7045008	G	A	SNP	ATN1	ENST00000356654	human	ensembl	69_37n	+1	known	missense	c.578	p.G193E	0.623	NULL	pfam_Atrophin-like,prints_Atrophin-1	-	no_errors	ATN1	HGNC	ENSG00000111676	51	0	0.00	42	5	10.64	-	-	-
C11orf82	0	genome.wustl.edu	37	11	82639858	82639858	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	11	82639858	82639858	A	-	DEL	C11orf82	ENST00000430323	human	ensembl	69_37n	+1	known	frame_shift_del	c.153	p.N52fs	0.984	pfam_Rep_factor-A_C,superfamily_NA-bd_OB-fold-like	pfam_Rep_factor-A_C,superfamily_NA-bd_OB-fold-like	-	no_errors	C11orf82	HGNC	ENSG00000165490	88	0	0.00	13	2	13.33	-	-	-
C1RL	0	genome.wustl.edu	37	12	7249748	7249748	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	12	7249748	7249748	G	A	SNP	C1RL	ENST00000266542	human	ensembl	69_37n	-1	known	missense	c.703	p.P235S	1.000	superfamily_Pept_cys/ser_Trypsin-like,superfamily_Complement_control_module	pfam_Peptidase_S1_S6,pfam_CUB,superfamily_Pept_cys/ser_Trypsin-like,superfamily_CUB,superfamily_Complement_control_module,smart_CUB,smart_Peptidase_S1_S6,pfscan_CUB,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	C1RL	HGNC	ENSG00000139178	40	0	0.00	25	4	13.79	-	-	-
CCPG1	0	genome.wustl.edu	37	15	55653040	55653040	+	Missense_Mutation	SNP	T	T	C			TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	15	55653040	55653040	T	C	SNP	CCPG1	ENST00000310958	human	ensembl	69_37n	-1	known	missense	c.931	p.R311G	0.995	NULL	NULL	-	no_errors	CCPG1	HGNC	ENSG00000260916	89	0	0.00	13	4	23.53	-	-	-
COBLL1	0	genome.wustl.edu	37	2	165551146	165551146	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	2	165551146	165551146	A	-	DEL	COBLL1	ENST00000194871	human	ensembl	69_37n	-1	known	frame_shift_del	c.3071	p.L1024fs	0.925	NULL	pfam_Cordon-bleu_domain,pfscan_WH2_dom	-	no_errors	COBLL1	HGNC	ENSG00000082438	47	0	0.00	13	2	13.33	-	-	-
DUS2L	0	genome.wustl.edu	37	16	68087509	68087509	+	Missense_Mutation	SNP	T	T	A			TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	16	68087509	68087509	T	A	SNP	DUS2L	ENST00000358896	human	ensembl	69_37n	+1	known	missense	c.215	p.V72D	0.992	pfam_tRNA_hU_synthase	pfam_tRNA_hU_synthase,pfam_Ds-RNA-bd,smart_Ds-RNA-bd	-	no_errors	DUS2L	HGNC	ENSG00000167264	56	0	0.00	43	28	39.44	-	-	-
EEF2K	0	genome.wustl.edu	37	16	22262009	22262009	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	16	22262009	22262009	G	A	SNP	EEF2K	ENST00000263026	human	ensembl	69_37n	+1	known	missense	c.443	p.R148Q	1.000	pfam_MHCK_EF2_kinase,superfamily_Kinase-like_dom,smart_MHCK_EF2_kinase,pirsf_Elongation_factor_2_kinase,pfscan_MHCK_EF2_kinase	pfam_MHCK_EF2_kinase,pfam_Sel1-like,superfamily_Kinase-like_dom,smart_MHCK_EF2_kinase,pirsf_Elongation_factor_2_kinase,pfscan_MHCK_EF2_kinase	-	no_errors	EEF2K	HGNC	ENSG00000103319	44	0	0.00	40	9	18.37	-	-	-
EEF2K	0	genome.wustl.edu	37	16	22295264	22295264	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	16	22295264	22295264	G	A	SNP	EEF2K	ENST00000263026	human	ensembl	69_37n	+1	known	missense	c.2125	p.A709T	1.000	pirsf_Elongation_factor_2_kinase	pfam_MHCK_EF2_kinase,pfam_Sel1-like,superfamily_Kinase-like_dom,smart_MHCK_EF2_kinase,pirsf_Elongation_factor_2_kinase,pfscan_MHCK_EF2_kinase	-	no_errors	EEF2K	HGNC	ENSG00000103319	28	0	0.00	24	4	14.29	-	-	-
ELP2	0	genome.wustl.edu	37	18	33716295	33716295	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	18	33716295	33716295	A	-	DEL	ELP2	ENST00000358232	human	ensembl	69_37n	+1	known	frame_shift_del	c.243	p.G82fs	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	ELP2	HGNC	ENSG00000134759	127	0	0.00	14	2	12.50	-	-	-
ERBB3	0	genome.wustl.edu	37	12	56495328	56495328	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	12	56495328	56495328	G	-	DEL	ERBB3	ENST00000267101	human	ensembl	69_37n	+1	known	frame_shift_del	c.3518	p.E1174fs	1.000	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Furin-like_Cys-rich_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt,smart_Furin_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	ERBB3	HGNC	ENSG00000065361	52	0	0.00	16	2	11.11	-	-	-
FAM157B	0	genome.wustl.edu	37	9	141107536	141107537	+	RNA	INS	-	-	GCA			TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	9	141107536	141107537	-	GCA	INS	FAM157B	ENST00000446912	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.033:0.036	-	-	-	no_errors	FAM157B	HGNC	ENSG00000233013	33	0	0.00	31	9	22.50	-	-	-
FGFR1	0	genome.wustl.edu	37	8	38282147	38282147	+	Silent	SNP	G	G	A			TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	8	38282147	38282147	G	A	SNP	FGFR1	ENST00000425967	human	ensembl	69_37n	-1	known	silent	c.909	p.N303	0.971	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pirsf_Tyr_kinase_fibroblast_GF_rcpt,pfscan_Ig-like	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_fibroblast_GF_rcpt,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	FGFR1	HGNC	ENSG00000077782	73	0	0.00	58	30	34.09	-	-	-
FLJ40852	0	genome.wustl.edu	37	7	141423729	141423729	+	RNA	DEL	T	T	-			TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	7	141423729	141423729	T	-	DEL	FLJ40852	ENST00000459753	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	RP5-894A10.5	Clone_based_vega_gene	ENSG00000228775	82	0	0.00	11	2	15.38	-	-	-
FRG1B	0	genome.wustl.edu	37	20	29612303	29612303	+	RNA	SNP	T	T	G			TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	20	29612303	29612303	T	G	SNP	FRG1B	ENST00000482423	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	FRG1B	HGNC	ENSG00000149531	11	0	0.00	8	6	42.86	-	-	-
INTS10	0	genome.wustl.edu	37	8	19677944	19677944	+	Missense_Mutation	SNP	C	C	G			TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	8	19677944	19677944	C	G	SNP	INTS10	ENST00000397977	human	ensembl	69_37n	+1	known	missense	c.356	p.T119R	1.000	NULL	NULL	-	no_errors	INTS10	HGNC	ENSG00000104613	107	0	0.00	25	6	19.35	-	-	-
INTU	0	genome.wustl.edu	37	4	128637566	128637566	+	Missense_Mutation	SNP	A	A	C			TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	4	128637566	128637566	A	C	SNP	INTU	ENST00000335251	human	ensembl	69_37n	+1	known	missense	c.2804	p.K935T	1.000	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	INTU	HGNC	ENSG00000164066	150	0	0.00	14	8	36.36	-	-	-
ITGB1	0	genome.wustl.edu	37	10	33212629	33212629	+	Missense_Mutation	SNP	A	A	G			TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	10	33212629	33212629	A	G	SNP	ITGB1	ENST00000374956	human	ensembl	69_37n	-1	known	missense	c.826	p.F276L	1.000	pirsf_Integrin_bsu,pfam_Integrin_bsu_N,smart_Integrin_bsu_N,prints_Integrin_bsu	pirsf_Integrin_bsu,pfam_Integrin_bsu_N,pfam_Integrin_bsu_tail,pfam_Integrin_bsu_cyt,pfam_EGF_extracell,superfamily_Integrin_bsu_tail,superfamily_Plexin-like_fold,smart_Plexin-like,smart_Integrin_bsu_N,prints_Integrin_bsu	-	no_errors	ITGB1	HGNC	ENSG00000150093	24	0	0.00	20	9	29.03	-	-	-
KIFC1	0	genome.wustl.edu	37	6	33374639	33374639	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	6	33374639	33374639	G	A	SNP	KIFC1	ENST00000428849	human	ensembl	69_37n	+1	known	missense	c.1964	p.R655H	0.997	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIFC1	HGNC	ENSG00000237649	98	0	0.00	53	7	11.67	-	-	-
KLHL6	0	genome.wustl.edu	37	3	183209883	183209883	+	Silent	SNP	C	C	A			TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	3	183209883	183209883	C	A	SNP	KLHL6	ENST00000341319	human	ensembl	69_37n	-1	known	silent	c.1698	p.R566	0.305	pfam_Kelch_1,smart_Kelch_1,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL6	HGNC	ENSG00000172578	19	0	0.00	17	13	43.33	-	-	-
LRRC47	0	genome.wustl.edu	37	1	3697704	3697704	+	Missense_Mutation	SNP	G	G	C			TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	1	3697704	3697704	G	C	SNP	LRRC47	ENST00000378251	human	ensembl	69_37n	-1	known	missense	c.1700	p.P567R	0.999	NULL	pfam_Leu-rich_rpt,pfam_B3/B4_tRNA-bd,smart_Leu-rich_rpt_typical-subtyp,smart_B3/B4_tRNA-bd	-	no_errors	LRRC47	HGNC	ENSG00000130764	35	0	0.00	30	10	25.00	-	-	-
MBIP	0	genome.wustl.edu	37	14	36783776	36783776	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	14	36783776	36783776	T	-	DEL	MBIP	ENST00000416007	human	ensembl	69_37n	-1	known	frame_shift_del	c.513	p.A172fs	1.000	NULL	NULL	-	no_errors	MBIP	HGNC	ENSG00000151332	86	0	0.00	10	2	16.67	-	-	-
MEG9	0	genome.wustl.edu	37	14	101539147	101539147	+	RNA	DEL	A	A	-			TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	14	101539147	101539147	A	-	DEL	MEG9	ENST00000429368	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.059	-	-	-	no_errors	MEG9	HGNC	ENSG00000223403	8	0	0.00	4	2	33.33	-	-	-
MMD	0	genome.wustl.edu	37	17	53491548	53491548	+	Silent	SNP	A	A	T			TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	17	53491548	53491548	A	T	SNP	MMD	ENST00000262065	human	ensembl	69_37n	-1	known	silent	c.72	p.T24	0.968	pfam_HlyIII-related	pfam_HlyIII-related,tigrfam_HylIII	-	no_errors	MMD	HGNC	ENSG00000108960	121	0	0.00	52	14	21.21	-	-	-
MMP14	0	genome.wustl.edu	37	14	23314529	23314529	+	Silent	SNP	A	A	G			TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	14	23314529	23314529	A	G	SNP	MMP14	ENST00000311852	human	ensembl	69_37n	+1	known	silent	c.1371	p.E457	1.000	pirsf_Pept_M10A_matrix_strom,pfam_Hemopexin/matrixin_repeat,superfamily_Hemopexin/matrixin,smart_Hemopexin/matrixin_repeat	pirsf_Pept_M10A_matrix_strom,pfam_Hemopexin/matrixin_repeat,pfam_Pept_M10_metallopeptidase,pfam_Pept_M10A_metallopeptidase_C,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin/matrixin,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_Hemopexin/matrixin_repeat,prints_Pept_M10A_matrixin	-	no_errors	MMP14	HGNC	ENSG00000157227	48	0	0.00	17	12	41.38	-	-	-
MSH6	0	genome.wustl.edu	37	2	48027782	48027782	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	2	48027782	48027782	T	-	DEL	MSH6	ENST00000234420	human	ensembl	69_37n	+1	known	frame_shift_del	c.2660	p.K888fs	1.000	pfam_DNA_mismatch_repair_MutS_core,superfamily_DNA_mismatch_repair_MutS_core,smart_DNA_mismatch_repair_MutS_core,pirsf_DNA_mismatch_repair_Msh6	pfam_DNA_mismatch_repair_MutS_C,pfam_DNA_mismatch_repair_MutS-lik_N,pfam_DNA_mismatch_repair_MutS_core,pfam_PWWP,pfam_DNA_mismatch_repair_MutS_clamp,pfam_DNA_mismatch_repair_MutS_connt,superfamily_DNA_mismatch_repair_MutS_core,superfamily_DNA_mismatch_repair_MutS_N,superfamily_DNA_mismatch_repair_MutS_connt,smart_PWWP,smart_DNA_mismatch_repair_MutS_core,smart_DNA_mismatch_repair_MutS_C,pirsf_DNA_mismatch_repair_Msh6,pfscan_PWWP	-	no_errors	MSH6	HGNC	ENSG00000116062	45	0	0.00	14	2	12.50	-	-	-
MYH2	0	genome.wustl.edu	37	17	10443330	10443330	+	Silent	SNP	C	C	T			TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	17	10443330	10443330	C	T	SNP	MYH2	ENST00000245503	human	ensembl	69_37n	-1	known	silent	c.1062	p.K354	1.000	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_Prefoldin,superfamily_Ribosomal_L29,superfamily_t-SNARE,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH2	HGNC	ENSG00000125414	121	0	0.00	30	23	43.40	-	-	-
MYO7B	0	genome.wustl.edu	37	2	128334255	128334255	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	2	128334255	128334255	C	T	SNP	MYO7B	ENST00000389524	human	ensembl	69_37n	+1	known	missense	c.821	p.T274M	0.001	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_MyTH4_dom,pfam_FERM_central,pfam_IQ_motif_EF-hand-BS,pfam_SH3_2,superfamily_FERM_central,superfamily_SH3_domain,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_MyTH4_dom,smart_Band_41_domain,smart_SH3_domain,pfscan_FERM_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_MyTH4_dom,pfscan_SH3_domain,prints_Myosin_head_motor_dom	-	no_errors	MYO7B	HGNC	ENSG00000169994	33	0	0.00	32	4	11.11	-	-	-
NAA25	0	genome.wustl.edu	37	12	112509715	112509715	+	Silent	SNP	G	G	A			TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	12	112509715	112509715	G	A	SNP	NAA25	ENST00000261745	human	ensembl	69_37n	-1	known	silent	c.1020	p.N340	0.108	pfam_N-acetylTrfase_B_cplx_non-cat	pfam_N-acetylTrfase_B_cplx_non-cat,pfscan_TPR-contain_dom	-	no_errors	NAA25	HGNC	ENSG00000111300	70	0	0.00	23	4	14.81	-	-	-
NAE1	0	genome.wustl.edu	37	16	66839867	66839867	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	16	66839867	66839867	G	-	DEL	NAE1	ENST00000290810	human	ensembl	69_37n	-1	known	frame_shift_del	c.1393	p.L465fs	1.000	superfamily_Molybdenum_cofac_synth_MoeB	pfam_ThiF_NAD_FAD-bd,superfamily_Molybdenum_cofac_synth_MoeB	-	no_errors	NAE1	HGNC	ENSG00000159593	68	0	0.00	14	2	12.50	-	-	-
NDUFB5	0	genome.wustl.edu	37	3	179334812	179334812	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	3	179334812	179334812	G	-	DEL	NDUFB5	ENST00000259037	human	ensembl	69_37n	+1	known	frame_shift_del	c.322	p.E108fs	1.000	pfam_NADH_UbQ_OxRdtase_B5_su	pfam_NADH_UbQ_OxRdtase_B5_su	-	no_errors	NDUFB5	HGNC	ENSG00000136521	52	0	0.00	14	2	12.50	-	-	-
NEMF	0	genome.wustl.edu	37	14	50281529	50281529	+	Missense_Mutation	SNP	T	T	C			TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	14	50281529	50281529	T	C	SNP	NEMF	ENST00000298310	human	ensembl	69_37n	-1	known	missense	c.1624	p.I542V	1.000	pfam_DUF814	pfam_Fibro-bd_N,pfam_DUF3441,pfam_DUF814,superfamily_FlgN-like_dom	-	no_errors	NEMF	HGNC	ENSG00000165525	137	0	0.00	25	11	30.56	-	-	-
NFAT5	0	genome.wustl.edu	37	16	69725862	69725862	+	Missense_Mutation	SNP	G	G	T			TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	16	69725862	69725862	G	T	SNP	NFAT5	ENST00000432919	human	ensembl	69_37n	+1	known	missense	c.2134	p.A712S	1.000	NULL	pfam_RHD,superfamily_p53-like_TF_DNA-bd,superfamily_Ig_E-set,smart_IPT_TIG_rcpt,pfscan_RHD,prints_NFAT	-	no_errors	NFAT5	HGNC	ENSG00000102908	74	0	0.00	23	15	39.47	-	-	-
NFXL1	0	genome.wustl.edu	37	4	47901430	47901430	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	4	47901430	47901430	A	-	DEL	NFXL1	ENST00000381538	human	ensembl	69_37n	-1	known	frame_shift_del	c.783	p.F261fs	1.000	NULL	pfam_Znf_NFX1,smart_Znf_NFX1,pfscan_Znf_RING	-	no_errors	NFXL1	HGNC	ENSG00000170448	50	0	0.00	15	2	11.76	-	-	-
NOP14	0	genome.wustl.edu	37	4	2945909	2945909	+	Silent	SNP	C	C	T			TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	4	2945909	2945909	C	T	SNP	NOP14	ENST00000416614	human	ensembl	69_37n	-1	known	silent	c.1782	p.V594	1.000	pfam_Nop14	pfam_Nop14	-	no_errors	NOP14	HGNC	ENSG00000087269	60	0	0.00	32	4	11.11	-	-	-
NPC1	0	genome.wustl.edu	37	18	21136530	21136530	+	Missense_Mutation	SNP	A	A	T			TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	18	21136530	21136530	A	T	SNP	NPC1	ENST00000269228	human	ensembl	69_37n	-1	known	missense	c.1003	p.L335M	0.002	tigrfam_NP_C_type	pfam_Patched,pfam_MMPL-typ,pfscan_SSD,tigrfam_NP_C_type	-	no_errors	NPC1	HGNC	ENSG00000141458	38	0	0.00	33	4	10.81	-	-	-
NPTX2	0	genome.wustl.edu	37	7	98257809	98257809	+	Silent	SNP	T	T	C			TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	7	98257809	98257809	T	C	SNP	NPTX2	ENST00000265634	human	ensembl	69_37n	+1	known	silent	c.1164	p.I388	0.333	pfam_Pentaxin,superfamily_ConA-like_lec_gl,smart_Pentaxin,prints_Pentaxin	pfam_Pentaxin,superfamily_ConA-like_lec_gl,smart_Pentaxin,prints_Pentaxin	-	no_errors	NPTX2	HGNC	ENSG00000106236	70	0	0.00	53	12	18.46	-	-	-
OR1Q1	0	genome.wustl.edu	37	9	125377241	125377241	+	Silent	SNP	C	C	T			TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	9	125377241	125377241	C	T	SNP	OR1Q1	ENST00000297913	human	ensembl	69_37n	+1	known	silent	c.225	p.S75	0.577	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR1Q1	HGNC	ENSG00000165202	102	0	0.00	73	35	32.41	-	-	-
OR2D2	0	genome.wustl.edu	37	11	6913561	6913561	+	Silent	SNP	T	T	G			TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	11	6913561	6913561	T	G	SNP	OR2D2	ENST00000299459	human	ensembl	69_37n	-1	known	silent	c.171	p.T57	0.996	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt	-	no_errors	OR2D2	HGNC	ENSG00000166368	82	0	0.00	49	9	15.52	-	-	-
PASK	0	genome.wustl.edu	37	2	242065791	242065791	+	Missense_Mutation	SNP	C	C	G			TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	2	242065791	242065791	C	G	SNP	PASK	ENST00000358649	human	ensembl	69_37n	-1	known	missense	c.2539	p.V847L	0.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PAS_fold,superfamily_Kinase-like_dom,smart_PAS,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_PAS,pfscan_Prot_kinase_cat_dom,tigrfam_PAS	-	no_errors	PASK	HGNC	ENSG00000115687	60	0	0.00	28	30	51.72	-	-	-
PCDHGA11	0	genome.wustl.edu	37	5	140802474	140802474	+	Silent	SNP	G	G	A			TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	5	140802474	140802474	G	A	SNP	PCDHGA11	ENST00000398587	human	ensembl	69_37n	+1	known	silent	c.1680	p.A560	0.000	superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHGA11	HGNC	ENSG00000253873	65	0	0.00	11	13	54.17	-	-	-
PCDHGA4	0	genome.wustl.edu	37	5	140735269	140735269	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	5	140735269	140735269	C	-	DEL	PCDHGA4	ENST00000571252	human	ensembl	69_37n	+1	known	frame_shift_del	c.502	p.Q168fs	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA4	HGNC	ENSG00000262576	54	0	0.00	13	2	13.33	-	-	-
PRAMEF18	0	genome.wustl.edu	37	1	13474849	13474849	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	1	13474849	13474849	G	A	SNP	PRAMEF18	ENST00000376126	human	ensembl	69_37n	-1	known	missense	c.1280	p.S427L	0.000	NULL	NULL	-	no_errors	PRAMEF18	HGNC	ENSG00000204491	34	0	0.00	19	3	13.64	-	-	-
PRR14L	0	genome.wustl.edu	37	22	32121576	32121576	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	22	32121576	32121576	G	-	DEL	PRR14L	ENST00000397493	human	ensembl	69_37n	-1	known	frame_shift_del	c.495	p.S166fs	0.639	NULL	NULL	-	no_errors	PRR14L	HGNC	ENSG00000183530	54	0	0.00	17	2	10.53	-	-	-
PRX	0	genome.wustl.edu	37	19	40901699	40901699	+	Silent	SNP	G	G	A			TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	19	40901699	40901699	G	A	SNP	PRX	ENST00000324001	human	ensembl	69_37n	-1	known	silent	c.2560	p.L854	0.155	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PRX	HGNC	ENSG00000105227	23	0	0.00	133	35	20.83	-	-	-
PRX	0	genome.wustl.edu	37	19	40902909	40902909	+	Silent	SNP	G	G	C			TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	19	40902909	40902909	G	C	SNP	PRX	ENST00000324001	human	ensembl	69_37n	-1	known	silent	c.1350	p.V450	0.483	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PRX	HGNC	ENSG00000105227	18	0	0.00	30	11	26.83	-	-	-
PRX	0	genome.wustl.edu	37	19	40903119	40903119	+	Silent	SNP	G	G	C			TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	19	40903119	40903119	G	C	SNP	PRX	ENST00000324001	human	ensembl	69_37n	-1	known	silent	c.1140	p.V380	0.426	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PRX	HGNC	ENSG00000105227	10	0	0.00	24	11	31.43	-	-	-
PSMA3	0	genome.wustl.edu	37	14	58727696	58727696	+	Silent	SNP	C	C	T			TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	14	58727696	58727696	C	T	SNP	PSMA3	ENST00000216455	human	ensembl	69_37n	+1	known	silent	c.435	p.D145	0.838	pfam_Proteasome_sua/b	pfam_Proteasome_sua/b,pfam_Proteasome_asu_N,smart_Proteasome_asu_N	-	no_errors	PSMA3	HGNC	ENSG00000100567	80	0	0.00	25	4	13.79	-	-	-
RFX2	0	genome.wustl.edu	37	19	6007781	6007781	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	19	6007781	6007781	G	A	SNP	RFX2	ENST00000589340	human	ensembl	69_37n	-1	putative	missense	c.154	p.P52S	0.989	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	RFX2	HGNC	ENSG00000087903	53	0	0.00	34	9	20.93	-	-	-
RYR3	0	genome.wustl.edu	37	15	34105734	34105734	+	Missense_Mutation	SNP	G	G	C			TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	15	34105734	34105734	G	C	SNP	RYR3	ENST00000389232	human	ensembl	69_37n	+1	known	missense	c.10456	p.A3486P	1.000	superfamily_ARM-type_fold	pfam_Ryanodine_rcpt,pfam_Ca-rel_channel,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,superfamily_4_helix_cytokine-like_core,superfamily_ARM-type_fold,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_HAND_2,pfscan_MIR_motif	-	no_errors	RYR3	HGNC	ENSG00000198838	48	0	0.00	20	8	28.57	-	-	-
RYR3	0	genome.wustl.edu	37	15	34140623	34140623	+	Splice_Site	SNP	G	G	A			TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	15	34140623	34140623	G	A	SNP	RYR3	ENST00000389232	human	ensembl	69_37n	+1	known	splice_site	c.13628+1	e94+1	1.000	-	-	-	no_errors	RYR3	HGNC	ENSG00000198838	30	0	0.00	12	4	25.00	-	-	-
SBNO1	0	genome.wustl.edu	37	12	123800123	123800123	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	12	123800123	123800123	G	-	DEL	SBNO1	ENST00000420886	human	ensembl	69_37n	-1	known	frame_shift_del	c.3020	p.S1007fs	1.000	NULL	pfam_Helicase/UvrB_dom,superfamily_Prismane-like	-	no_errors	SBNO1	HGNC	ENSG00000139697	109	0	0.00	30	7	18.92	-	-	-
SIN3B	0	genome.wustl.edu	37	19	16976441	16976442	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	19	16976441	16976442	-	C	INS	SIN3B	ENST00000379803	human	ensembl	69_37n	+1	known	frame_shift_ins	c.1700_1701	p.V569fs	0.974:0.500	NULL	pfam_PAH,pfam_HDAC_interact,superfamily_PAH,smart_HDAC_interact	-	no_errors	SIN3B	HGNC	ENSG00000127511	11	0	0.00	15	6	28.57	-	-	-
SLC16A4	0	genome.wustl.edu	37	1	110919758	110919758	+	Missense_Mutation	SNP	A	A	C			TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	1	110919758	110919758	A	C	SNP	SLC16A4	ENST00000369779	human	ensembl	69_37n	-1	known	missense	c.1056	p.I352M	0.477	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC16A4	HGNC	ENSG00000168679	108	0	0.00	19	8	29.63	-	-	-
SLITRK1	0	genome.wustl.edu	37	13	84453897	84453897	+	Silent	SNP	G	G	A			TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	13	84453897	84453897	G	A	SNP	SLITRK1	ENST00000377084	human	ensembl	69_37n	-1	known	silent	c.1746	p.Y582	0.990	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	SLITRK1	HGNC	ENSG00000178235	80	0	0.00	55	12	17.91	-	-	-
SMEK1	0	genome.wustl.edu	37	14	91937280	91937280	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	14	91937280	91937280	C	T	SNP	SMEK1	ENST00000554943	human	ensembl	69_37n	-1	known	missense	c.1561	p.E521K	1.000	superfamily_ARM-type_fold	pfam_DUF625,superfamily_ARM-type_fold	-	no_errors	SMEK1	HGNC	ENSG00000100796	63	0	0.00	16	8	33.33	-	-	-
SYDE1	0	genome.wustl.edu	37	19	15224594	15224594	+	Silent	SNP	C	C	T			TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	19	15224594	15224594	C	T	SNP	SYDE1	ENST00000342784	human	ensembl	69_37n	+1	known	silent	c.2028	p.D676	1.000	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	SYDE1	HGNC	ENSG00000105137	43	0	0.00	28	20	41.67	-	-	-
TCOF1	0	genome.wustl.edu	37	5	149755799	149755799	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	5	149755799	149755799	C	T	SNP	TCOF1	ENST00000451292	human	ensembl	69_37n	+1	known	missense	c.2048	p.A683V	0.002	pfam_TCS_treacle	pfam_TCS_treacle,smart_LisH_dimerisation,pfscan_LisH_dimerisation,prints_Treacle-like_TCS	-	no_errors	TCOF1	HGNC	ENSG00000070814	66	0	0.00	17	10	37.04	-	-	-
TMEM106A	0	genome.wustl.edu	37	17	41365219	41365219	+	Missense_Mutation	SNP	T	T	G			TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	17	41365219	41365219	T	G	SNP	TMEM106A	ENST00000331615	human	ensembl	69_37n	+1	known	missense	c.159	p.D53E	0.002	pfam_DUF1356_TMEM106	pfam_DUF1356_TMEM106	-	no_errors	TMEM106A	HGNC	ENSG00000184988	42	0	0.00	23	15	39.47	-	-	-
TMTC4	0	genome.wustl.edu	37	13	101264696	101264696	+	Missense_Mutation	SNP	T	T	A			TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	13	101264696	101264696	T	A	SNP	TMTC4	ENST00000342624	human	ensembl	69_37n	-1	known	missense	c.2020	p.M674L	1.000	smart_TPR_repeat,pfscan_TPR-contain_dom	pfam_TPR-1,pfam_DUF1736,pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TMTC4	HGNC	ENSG00000125247	119	0	0.00	39	17	30.36	-	-	-
TNXB	0	genome.wustl.edu	37	6	32025869	32025869	+	Silent	SNP	C	C	T			TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	6	32025869	32025869	C	T	SNP	TNXB	ENST00000375247	human	ensembl	69_37n	-1	known	silent	c.7791	p.R2597	0.325	superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C,superfamily_Fibronectin_type3,smart_EGF-like,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C,pfscan_EG-like_dom,pfscan_Fibronectin_type3	-	no_errors	TNXB	HGNC	ENSG00000168477	15	0	0.00	11	4	26.67	-	-	-
TP53	0	genome.wustl.edu	37	17	7578551	7578551	+	Missense_Mutation	SNP	A	A	G			TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	17	7578551	7578551	A	G	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.379	p.S127P	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	56	0	0.00	15	14	48.28	-	-	-
TSG101	0	genome.wustl.edu	37	11	18537699	18537699	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	11	18537699	18537699	C	-	DEL	TSG101	ENST00000251968	human	ensembl	69_37n	-1	known	frame_shift_del	c.140	p.G47fs	1.000	pfam_UEV_N,superfamily_UBQ-conjugating_enzyme/RWD	pfam_UEV_N,pfam_Steadiness_box,superfamily_UBQ-conjugating_enzyme/RWD	-	no_errors	TSG101	HGNC	ENSG00000074319	52	0	0.00	14	2	12.50	-	-	-
TTN	0	genome.wustl.edu	37	2	179404659	179404659	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	2	179404659	179404659	T	-	DEL	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	frame_shift_del	c.90429	p.E30144fs	1.000	superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	81	0	0.00	13	2	13.33	-	-	-
ZFAND4	0	genome.wustl.edu	37	10	46143870	46143870	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	10	46143870	46143870	T	-	DEL	ZFAND4	ENST00000344646	human	ensembl	69_37n	-1	known	frame_shift_del	c.441	p.G148fs	1.000	NULL	pfam_Ubiquitin,pfam_Znf_AN1,smart_Ubiquitin,smart_Znf_AN1,prints_Ubiquitin_subgr,pfscan_Znf_AN1,pfscan_Ubiquitin_supergroup	-	no_errors	ZFAND4	HGNC	ENSG00000172671	76	0	0.00	16	2	11.11	-	-	-
ZNF208	0	genome.wustl.edu	37	19	22155521	22155521	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	19	22155521	22155521	G	A	SNP	ZNF208	ENST00000397126	human	ensembl	69_37n	-1	known	missense	c.2315	p.T772I	0.989	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF208	HGNC	ENSG00000160321	37	0	0.00	14	5	26.32	-	-	-
