Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
AKR1C4	0	genome.wustl.edu	37	10	5254676	5254676	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A1FG-01A-11D-A13L-09	TCGA-BH-A1FG-11B-12D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	311f2f1a-75c8-4fee-b31d-0815d71a3173	e0c48952-a56b-4c97-89b7-7bc9d7acde38	10	5254676	5254676	G	A	SNP	AKR1C4	ENST00000263126	human	ensembl	69_37n	+1	known	missense	c.668	p.R223Q	0.155	pfam_NADP_OxRdtase_dom,superfamily_NADP_OxRdtase_dom	pfam_NADP_OxRdtase_dom,superfamily_NADP_OxRdtase_dom,prints_Aldo/keto_reductase_subgr	-	no_errors	AKR1C4	HGNC	ENSG00000198610	101	0	0.00	57	9	13.64	-	-	-
GPR98	0	genome.wustl.edu	37	5	89986809	89986809	+	Missense_Mutation	SNP	A	A	T			TCGA-BH-A1FG-01A-11D-A13L-09	TCGA-BH-A1FG-11B-12D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	311f2f1a-75c8-4fee-b31d-0815d71a3173	e0c48952-a56b-4c97-89b7-7bc9d7acde38	5	89986809	89986809	A	T	SNP	GPR98	ENST00000405460	human	ensembl	69_37n	+1	known	missense	c.6902	p.Q2301L	1.000	smart_Calx_beta	pfam_Calx_beta,pfam_EPTP,pfam_GPCR_2_secretin-like,pfam_GPS_dom,superfamily_ConA-like_lec_gl,superfamily_Gal_Oxase/kelch_b-propeller,smart_Calx_beta,pfscan_EAR,pfscan_GPS_dom,pfscan_GPCR_2-like	-	no_errors	GPR98	HGNC	ENSG00000164199	122	0	0.00	45	29	39.19	-	-	-
KHDC3L	0	genome.wustl.edu	37	6	74072569	74072569	+	Silent	SNP	G	G	T			TCGA-BH-A1FG-01A-11D-A13L-09	TCGA-BH-A1FG-11B-12D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	311f2f1a-75c8-4fee-b31d-0815d71a3173	e0c48952-a56b-4c97-89b7-7bc9d7acde38	6	74072569	74072569	G	T	SNP	KHDC3L	ENST00000370367	human	ensembl	69_37n	+1	known	silent	c.117	p.L39	0.003	NULL	NULL	-	no_errors	KHDC3L	HGNC	ENSG00000203908	76	0	0.00	33	4	10.81	-	-	-
LILRA4	0	genome.wustl.edu	37	19	54849483	54849483	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A1FG-01A-11D-A13L-09	TCGA-BH-A1FG-11B-12D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	311f2f1a-75c8-4fee-b31d-0815d71a3173	e0c48952-a56b-4c97-89b7-7bc9d7acde38	19	54849483	54849483	C	T	SNP	LILRA4	ENST00000291759	human	ensembl	69_37n	-1	known	missense	c.379	p.A127T	0.035	pirsf_A1B_glyco/leuk_Ig-like_rcpt,pfscan_Ig-like	smart_Ig_sub,smart_Ig_sub2,pirsf_A1B_glyco/leuk_Ig-like_rcpt,pfscan_Ig-like	-	no_errors	LILRA4	HGNC	ENSG00000239961	42	0	0.00	13	10	43.48	-	-	-
MAMLD1	0	genome.wustl.edu	37	X	149613879	149613879	+	Splice_Site	SNP	G	G	A			TCGA-BH-A1FG-01A-11D-A13L-09	TCGA-BH-A1FG-11B-12D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	311f2f1a-75c8-4fee-b31d-0815d71a3173	e0c48952-a56b-4c97-89b7-7bc9d7acde38	X	149613879	149613879	G	A	SNP	MAMLD1	ENST00000432680	human	ensembl	69_37n	+1	known	splice_site	c.96+1	e1+1	1.000	-	-	-	no_errors	MAMLD1	HGNC	ENSG00000013619	98	0	0.00	32	25	43.86	-	-	-
NBEA	0	genome.wustl.edu	37	13	35785239	35785239	+	Silent	SNP	G	G	C			TCGA-BH-A1FG-01A-11D-A13L-09	TCGA-BH-A1FG-11B-12D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	311f2f1a-75c8-4fee-b31d-0815d71a3173	e0c48952-a56b-4c97-89b7-7bc9d7acde38	13	35785239	35785239	G	C	SNP	NBEA	ENST00000310336	human	ensembl	69_37n	+1	known	silent	c.5571	p.V1857	1.000	NULL	pfam_BEACH_dom,pfam_DUF1088,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_ConA-like_lec_gl,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat_dom	-	no_errors	NBEA	HGNC	ENSG00000172915	147	0	0.00	70	44	38.60	-	-	-
PPP2R2A	0	genome.wustl.edu	37	8	26227655	26227655	+	Missense_Mutation	SNP	T	T	A			TCGA-BH-A1FG-01A-11D-A13L-09	TCGA-BH-A1FG-11B-12D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	311f2f1a-75c8-4fee-b31d-0815d71a3173	e0c48952-a56b-4c97-89b7-7bc9d7acde38	8	26227655	26227655	T	A	SNP	PPP2R2A	ENST00000380737	human	ensembl	69_37n	+1	known	missense	c.1070	p.V357D	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_PP2A_PR55,prints_PP2A_PR55	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_PP2A_PR55,prints_PP2A_PR55	-	no_errors	PPP2R2A	HGNC	ENSG00000221914	62	0	0.00	11	24	68.57	-	-	-
PRDM16	0	genome.wustl.edu	37	1	3328646	3328646	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A1FG-01A-11D-A13L-09	TCGA-BH-A1FG-11B-12D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	311f2f1a-75c8-4fee-b31d-0815d71a3173	e0c48952-a56b-4c97-89b7-7bc9d7acde38	1	3328646	3328646	G	A	SNP	PRDM16	ENST00000270722	human	ensembl	69_37n	+1	known	missense	c.1885	p.V629M	1.000	NULL	pfam_Znf_C2H2,pfam_Znf_BED_prd,smart_SET_dom,smart_Znf_C2H2-like,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	PRDM16	HGNC	ENSG00000142611	13	0	0.00	3	5	62.50	-	-	-
RAB40A	0	genome.wustl.edu	37	X	102755501	102755501	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A1FG-01A-11D-A13L-09	TCGA-BH-A1FG-11B-12D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	311f2f1a-75c8-4fee-b31d-0815d71a3173	e0c48952-a56b-4c97-89b7-7bc9d7acde38	X	102755501	102755501	G	A	SNP	RAB40A	ENST00000304236	human	ensembl	69_37n	-1	known	missense	c.184	p.R62W	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_SOCS_C,pfam_Small_GTPase_ARF/SAR,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,smart_SOCS_C,prints_Small_GTPase,pfscan_SOCS_C,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB40A	HGNC	ENSG00000172476	101	0	0.00	54	8	12.90	-	-	-
RASAL1	0	genome.wustl.edu	37	12	113553739	113553739	+	Missense_Mutation	SNP	C	C	A			TCGA-BH-A1FG-01A-11D-A13L-09	TCGA-BH-A1FG-11B-12D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	311f2f1a-75c8-4fee-b31d-0815d71a3173	e0c48952-a56b-4c97-89b7-7bc9d7acde38	12	113553739	113553739	C	A	SNP	RASAL1	ENST00000546530	human	ensembl	69_37n	-1	known	missense	c.849	p.E283D	1.000	superfamily_Rho_GTPase_activation_prot,smart_RasGAP	pfam_RasGAP,pfam_C2_Ca-dep,pfam_Znf_Btk_motif,pfam_Pleckstrin_homology,superfamily_Rho_GTPase_activation_prot,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_RasGAP,smart_Pleckstrin_homology,smart_Znf_Btk_motif,pfscan_C2_membr_targeting,pfscan_Pleckstrin_homology,pfscan_Znf_Btk_motif,pfscan_RasGAP	-	no_errors	RASAL1	HGNC	ENSG00000111344	27	0	0.00	10	8	44.44	-	-	-
RNA5-8SP6	0	genome.wustl.edu	37	Y	10037843	10037843	+	RNA	SNP	C	C	T			TCGA-BH-A1FG-01A-11D-A13L-09	TCGA-BH-A1FG-11B-12D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	311f2f1a-75c8-4fee-b31d-0815d71a3173	e0c48952-a56b-4c97-89b7-7bc9d7acde38	Y	10037843	10037843	C	T	SNP	RNA5-8SP6	ENST00000515896	human	ensembl	69_37n	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RNA5-8SP6	HGNC	ENSG00000251705	29	0	0.00	22	4	15.38	-	-	-
RPLP0	0	genome.wustl.edu	37	12	120635133	120635133	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A1FG-01A-11D-A13L-09	TCGA-BH-A1FG-11B-12D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	311f2f1a-75c8-4fee-b31d-0815d71a3173	e0c48952-a56b-4c97-89b7-7bc9d7acde38	12	120635133	120635133	C	T	SNP	RPLP0	ENST00000228306	human	ensembl	69_37n	-1	known	missense	c.784	p.A262T	1.000	pfam_Ribosomal_60S	pfam_Ribosomal_L10/acidic_P0,pfam_Ribosomal_60S	-	no_errors	RPLP0	HGNC	ENSG00000089157	53	0	0.00	29	15	34.09	-	-	-
SPDYE1	0	genome.wustl.edu	37	7	44043475	44043475	+	Silent	SNP	C	C	T			TCGA-BH-A1FG-01A-11D-A13L-09	TCGA-BH-A1FG-11B-12D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	311f2f1a-75c8-4fee-b31d-0815d71a3173	e0c48952-a56b-4c97-89b7-7bc9d7acde38	7	44043475	44043475	C	T	SNP	SPDYE1	ENST00000258704	human	ensembl	69_37n	+1	known	silent	c.511	p.L171	0.412	pfam_Cell_cycle_regulatory_Spy1	pfam_Cell_cycle_regulatory_Spy1	-	no_errors	SPDYE1	HGNC	ENSG00000136206	46	0	0.00	33	5	13.16	-	-	-
TMEM214	0	genome.wustl.edu	37	2	27262671	27262671	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A1FG-01A-11D-A13L-09	TCGA-BH-A1FG-11B-12D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	311f2f1a-75c8-4fee-b31d-0815d71a3173	e0c48952-a56b-4c97-89b7-7bc9d7acde38	2	27262671	27262671	G	A	SNP	TMEM214	ENST00000238788	human	ensembl	69_37n	+1	known	missense	c.1588	p.A530T	0.041	pfam_DUF2359_TMEM214	pfam_DUF2359_TMEM214	-	no_errors	TMEM214	HGNC	ENSG00000119777	106	0	0.00	44	15	25.42	-	-	-
TNFSF4	0	genome.wustl.edu	37	1	173155705	173155705	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A1FG-01A-11D-A13L-09	TCGA-BH-A1FG-11B-12D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	311f2f1a-75c8-4fee-b31d-0815d71a3173	e0c48952-a56b-4c97-89b7-7bc9d7acde38	1	173155705	173155705	C	T	SNP	TNFSF4	ENST00000281834	human	ensembl	69_37n	-1	known	missense	c.502	p.G168R	0.930	pfam_TNF,superfamily_Tumour_necrosis_fac-like,smart_TNF	pfam_TNF,superfamily_Tumour_necrosis_fac-like,smart_TNF	-	no_errors	TNFSF4	HGNC	ENSG00000117586	48	0	0.00	23	7	23.33	-	-	-
TRIP12	0	genome.wustl.edu	37	2	230663600	230663601	+	Frame_Shift_Del	DEL	GA	GA	-			TCGA-BH-A1FG-01A-11D-A13L-09	TCGA-BH-A1FG-11B-12D-A13O-09	GA	GA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	311f2f1a-75c8-4fee-b31d-0815d71a3173	e0c48952-a56b-4c97-89b7-7bc9d7acde38	2	230663600	230663601	GA	-	DEL	TRIP12	ENST00000283943	human	ensembl	69_37n	-1	known	frame_shift_del	c.3248_3247	p.S1083fs	1.000:1.000	NULL	pfam_HECT,superfamily_HECT,superfamily_ARM-type_fold,smart_HECT,pfscan_HECT,pfscan_WWE-dom	-	no_errors	TRIP12	HGNC	ENSG00000153827	127	0	0.00	72	19	20.65	-	-	-
WDR47	0	genome.wustl.edu	37	1	109553818	109553818	+	Missense_Mutation	SNP	A	A	C			TCGA-BH-A1FG-01A-11D-A13L-09	TCGA-BH-A1FG-11B-12D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	311f2f1a-75c8-4fee-b31d-0815d71a3173	e0c48952-a56b-4c97-89b7-7bc9d7acde38	1	109553818	109553818	A	C	SNP	WDR47	ENST00000400794	human	ensembl	69_37n	-1	known	missense	c.871	p.L291V	0.995	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_LisH_dimerisation,smart_CTLH_C,smart_WD40_repeat,pfscan_LisH_dimerisation,pfscan_CTLH_C,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR47	HGNC	ENSG00000085433	78	0	0.00	62	9	12.68	-	-	-
WDR54	0	genome.wustl.edu	37	2	74652076	74652076	+	Silent	SNP	A	A	G			TCGA-BH-A1FG-01A-11D-A13L-09	TCGA-BH-A1FG-11B-12D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	311f2f1a-75c8-4fee-b31d-0815d71a3173	e0c48952-a56b-4c97-89b7-7bc9d7acde38	2	74652076	74652076	A	G	SNP	WDR54	ENST00000348227	human	ensembl	69_37n	+1	known	silent	c.609	p.T203	0.420	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR54	HGNC	ENSG00000005448	70	0	0.00	50	17	25.00	-	-	-
YIPF6	0	genome.wustl.edu	37	X	67741223	67741223	+	Silent	SNP	A	A	G			TCGA-BH-A1FG-01A-11D-A13L-09	TCGA-BH-A1FG-11B-12D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	311f2f1a-75c8-4fee-b31d-0815d71a3173	e0c48952-a56b-4c97-89b7-7bc9d7acde38	X	67741223	67741223	A	G	SNP	YIPF6	ENST00000462683	human	ensembl	69_37n	+1	known	silent	c.318	p.Q106	0.981	pfam_Yip1	pfam_Yip1	-	no_errors	YIPF6	HGNC	ENSG00000181704	170	0	0.00	89	67	42.95	-	-	-
