Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
AKAP4	0	genome.wustl.edu	37	X	49958929	49958929	+	Silent	SNP	G	G	A			TCGA-D8-A1JH-01A-11D-A188-09	TCGA-D8-A1JH-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f59481d-be89-4361-8cc3-3f1d46702016	68f2e564-b0dc-4e75-bc4d-9d849d9ac596	X	49958929	49958929	G	A	SNP	AKAP4	ENST00000358526	human	ensembl	69_37n	-1	known	silent	c.435	p.G145	0.000	smart_AKAP_110	pfam_AKAP_110_C,pfam_RII_binding_1,smart_AKAP_110	-	no_errors	AKAP4	HGNC	ENSG00000147081	102	0	0.00	119	41	25.47	-	-	-
ATF4	0	genome.wustl.edu	37	22	39917837	39917837	+	Silent	SNP	T	T	C			TCGA-D8-A1JH-01A-11D-A188-09	TCGA-D8-A1JH-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f59481d-be89-4361-8cc3-3f1d46702016	68f2e564-b0dc-4e75-bc4d-9d849d9ac596	22	39917837	39917837	T	C	SNP	ATF4	ENST00000337304	human	ensembl	69_37n	+1	known	silent	c.286	p.L96	0.995	NULL	pfam_bZIP_1,pfam_bZIP_2,smart_bZIP,pfscan_bZIP	-	no_errors	ATF4	HGNC	ENSG00000128272	82	0	0.00	83	30	26.55	-	-	-
CASP8	0	genome.wustl.edu	37	2	202123066	202123066	+	Missense_Mutation	SNP	G	G	T			TCGA-D8-A1JH-01A-11D-A188-09	TCGA-D8-A1JH-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f59481d-be89-4361-8cc3-3f1d46702016	68f2e564-b0dc-4e75-bc4d-9d849d9ac596	2	202123066	202123066	G	T	SNP	CASP8	ENST00000358485	human	ensembl	69_37n	+1	known	missense	c.112	p.D38Y	0.008	NULL	pfam_DED,pfam_Pept_C14_cat,superfamily_DEATH-like,smart_DED,smart_Pept_C14_p45_core,pfscan_DED,pfscan_Pept_C14_p10,pfscan_Pept_C14_ICE_p20,prints_Pept_C14_p45_core	-	no_errors	CASP8	HGNC	ENSG00000064012	88	0	0.00	103	30	22.56	-	-	-
CCT6B	0	genome.wustl.edu	37	17	33281599	33281599	+	Missense_Mutation	SNP	A	A	G			TCGA-D8-A1JH-01A-11D-A188-09	TCGA-D8-A1JH-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f59481d-be89-4361-8cc3-3f1d46702016	68f2e564-b0dc-4e75-bc4d-9d849d9ac596	17	33281599	33281599	A	G	SNP	CCT6B	ENST00000314144	human	ensembl	69_37n	-1	known	missense	c.356	p.I119T	1.000	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,tigrfam_Chap_CCT_zeta	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,prints_Chaperone_TCP-1,prints_Chaprnin_Cpn60,tigrfam_Chap_CCT_zeta	-	no_errors	CCT6B	HGNC	ENSG00000132141	124	0	0.00	96	34	25.95	-	-	-
CD99	0	genome.wustl.edu	37	X	2641396	2641396	+	Missense_Mutation	SNP	G	G	A			TCGA-D8-A1JH-01A-11D-A188-09	TCGA-D8-A1JH-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f59481d-be89-4361-8cc3-3f1d46702016	68f2e564-b0dc-4e75-bc4d-9d849d9ac596	X	2641396	2641396	G	A	SNP	CD99	ENST00000381192	human	ensembl	69_37n	+1	known	missense	c.352	p.G118R	0.001	pfam_CD99L2	pfam_CD99L2	-	no_errors	CD99	HGNC	ENSG00000002586	276	0	0.00	394	118	23.05	-	-	-
CDC42EP1	0	genome.wustl.edu	37	22	37964417	37964417	+	Missense_Mutation	SNP	G	G	A			TCGA-D8-A1JH-01A-11D-A188-09	TCGA-D8-A1JH-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f59481d-be89-4361-8cc3-3f1d46702016	68f2e564-b0dc-4e75-bc4d-9d849d9ac596	22	37964417	37964417	G	A	SNP	CDC42EP1	ENST00000249014	human	ensembl	69_37n	+1	known	missense	c.766	p.A256T	0.013	NULL	pfam_PAK_box_Rho-bd,smart_PAK_box_Rho-bd,pfscan_PAK_box_Rho-bd	-	no_errors	CDC42EP1	HGNC	ENSG00000128283	14	0	0.00	14	6	30.00	-	-	-
CPT2	0	genome.wustl.edu	37	1	53675969	53675969	+	Missense_Mutation	SNP	A	A	G			TCGA-D8-A1JH-01A-11D-A188-09	TCGA-D8-A1JH-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f59481d-be89-4361-8cc3-3f1d46702016	68f2e564-b0dc-4e75-bc4d-9d849d9ac596	1	53675969	53675969	A	G	SNP	CPT2	ENST00000371486	human	ensembl	69_37n	+1	known	missense	c.623	p.N208S	1.000	pfam_Carn_acyl_trans	pfam_Carn_acyl_trans	-	no_errors	CPT2	HGNC	ENSG00000157184	69	0	0.00	66	18	21.43	-	-	-
DCAF6	0	genome.wustl.edu	37	1	167935897	167935897	+	Missense_Mutation	SNP	G	G	A			TCGA-D8-A1JH-01A-11D-A188-09	TCGA-D8-A1JH-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f59481d-be89-4361-8cc3-3f1d46702016	68f2e564-b0dc-4e75-bc4d-9d849d9ac596	1	167935897	167935897	G	A	SNP	DCAF6	ENST00000367840	human	ensembl	69_37n	+1	known	missense	c.190	p.E64K	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_IQ_motif_EF-hand-BS,pfscan_WD40_repeat_dom	-	no_errors	DCAF6	HGNC	ENSG00000143164	121	0	0.00	96	26	21.31	-	-	-
DGKB	0	genome.wustl.edu	37	7	14880851	14880851	+	Missense_Mutation	SNP	G	G	A			TCGA-D8-A1JH-01A-11D-A188-09	TCGA-D8-A1JH-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f59481d-be89-4361-8cc3-3f1d46702016	68f2e564-b0dc-4e75-bc4d-9d849d9ac596	7	14880851	14880851	G	A	SNP	DGKB	ENST00000258767	human	ensembl	69_37n	-1	known	missense	c.38	p.S13L	1.000	NULL	pfam_Diacylglycerol_kin_accessory,pfam_Diacylglycerol_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,smart_EF_hand_Ca-bd,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kin_accessory,pfscan_EF_HAND_2,pfscan_Prot_Kinase_C-like_PE/DAG-bd	-	no_errors	DGKB	HGNC	ENSG00000136267	128	0	0.00	111	42	27.45	-	-	-
ESPNP	0	genome.wustl.edu	37	1	17033805	17033805	+	RNA	SNP	C	C	T			TCGA-D8-A1JH-01A-11D-A188-09	TCGA-D8-A1JH-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f59481d-be89-4361-8cc3-3f1d46702016	68f2e564-b0dc-4e75-bc4d-9d849d9ac596	1	17033805	17033805	C	T	SNP	ESPNP	ENST00000492551	human	ensembl	69_37n	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	ESPNP	HGNC	ENSG00000116219	13	0	0.00	28	10	26.32	-	-	-
IRGC	0	genome.wustl.edu	37	19	44223848	44223848	+	Missense_Mutation	SNP	G	G	A			TCGA-D8-A1JH-01A-11D-A188-09	TCGA-D8-A1JH-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f59481d-be89-4361-8cc3-3f1d46702016	68f2e564-b0dc-4e75-bc4d-9d849d9ac596	19	44223848	44223848	G	A	SNP	IRGC	ENST00000244314	human	ensembl	69_37n	+1	known	missense	c.1138	p.A380T	0.772	NULL	pfam_Interferon-induced_GTPase	-	no_errors	IRGC	HGNC	ENSG00000124449	15	0	0.00	29	12	29.27	-	-	-
KDM6A	0	genome.wustl.edu	37	X	44922686	44922687	+	Frame_Shift_Ins	INS	-	-	A			TCGA-D8-A1JH-01A-11D-A188-09	TCGA-D8-A1JH-10A-01D-A13O-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f59481d-be89-4361-8cc3-3f1d46702016	68f2e564-b0dc-4e75-bc4d-9d849d9ac596	X	44922686	44922687	-	A	INS	KDM6A	ENST00000382899	human	ensembl	69_37n	+1	known	frame_shift_ins	c.1568_1569	p.Q524fs	1.000:1.000	NULL	pfam_JmjC_dom,pfam_TPR-1,smart_TPR_repeat,smart_JmjC_dom,pfscan_JmjC_dom,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	KDM6A	HGNC	ENSG00000147050	25	0	0.00	31	9	22.50	-	-	-
MAP3K1	0	genome.wustl.edu	37	5	56184105	56184105	+	Missense_Mutation	SNP	G	G	C			TCGA-D8-A1JH-01A-11D-A188-09	TCGA-D8-A1JH-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f59481d-be89-4361-8cc3-3f1d46702016	68f2e564-b0dc-4e75-bc4d-9d849d9ac596	5	56184105	56184105	G	C	SNP	MAP3K1	ENST00000399503	human	ensembl	69_37n	+1	novel	missense	c.4310	p.C1437S	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_RING,pfscan_Znf_SWIM,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K1	HGNC	ENSG00000095015	135	0	0.00	180	39	17.81	-	-	-
MED23	0	genome.wustl.edu	37	6	131925356	131925356	+	Missense_Mutation	SNP	T	T	C			TCGA-D8-A1JH-01A-11D-A188-09	TCGA-D8-A1JH-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f59481d-be89-4361-8cc3-3f1d46702016	68f2e564-b0dc-4e75-bc4d-9d849d9ac596	6	131925356	131925356	T	C	SNP	MED23	ENST00000368058	human	ensembl	69_37n	-1	known	missense	c.1736	p.Y579C	1.000	pfam_Mediator_Med23	pfam_Mediator_Med23	-	no_errors	MED23	HGNC	ENSG00000112282	84	0	0.00	78	22	22.00	-	-	-
PIK3CA	0	genome.wustl.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G			TCGA-D8-A1JH-01A-11D-A188-09	TCGA-D8-A1JH-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f59481d-be89-4361-8cc3-3f1d46702016	68f2e564-b0dc-4e75-bc4d-9d849d9ac596	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	+1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	48	0	0.00	49	21	29.58	-	-	-
RASD2	0	genome.wustl.edu	37	22	35943099	35943099	+	Silent	SNP	C	C	T			TCGA-D8-A1JH-01A-11D-A188-09	TCGA-D8-A1JH-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f59481d-be89-4361-8cc3-3f1d46702016	68f2e564-b0dc-4e75-bc4d-9d849d9ac596	22	35943099	35943099	C	T	SNP	RASD2	ENST00000216127	human	ensembl	69_37n	+1	known	silent	c.243	p.P81	0.032	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_ProtSyn_GTP-bd,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_ProtSyn_GTP-bd,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RASD2	HGNC	ENSG00000100302	26	0	0.00	41	10	19.61	-	-	-
RBM39	0	genome.wustl.edu	37	20	34313042	34313042	+	Missense_Mutation	SNP	T	T	A			TCGA-D8-A1JH-01A-11D-A188-09	TCGA-D8-A1JH-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f59481d-be89-4361-8cc3-3f1d46702016	68f2e564-b0dc-4e75-bc4d-9d849d9ac596	20	34313042	34313042	T	A	SNP	RBM39	ENST00000253363	human	ensembl	69_37n	-1	known	missense	c.452	p.D151V	1.000	tigrfam_CC1_SF	pfam_RRM_dom,smart_RRM_dom,smart_RRM_dom_euk,pfscan_RRM_dom,tigrfam_CC1_SF	-	no_errors	RBM39	HGNC	ENSG00000131051	77	0	0.00	77	15	16.30	-	-	-
RBMX	0	genome.wustl.edu	37	X	135960146	135960147	+	Frame_Shift_Ins	INS	-	-	AA			TCGA-D8-A1JH-01A-11D-A188-09	TCGA-D8-A1JH-10A-01D-A13O-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f59481d-be89-4361-8cc3-3f1d46702016	68f2e564-b0dc-4e75-bc4d-9d849d9ac596	X	135960146	135960147	-	AA	INS	RBMX	ENST00000320676	human	ensembl	69_37n	-1	known	frame_shift_ins	c.316_315	p.P105fs	1.000:1.000	NULL	pfam_RRM_dom,pfam_RBM1CTR,smart_RRM_dom_euk,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBMX	HGNC	ENSG00000147274	73	0	0.00	98	13	11.71	-	-	-
RTTN	0	genome.wustl.edu	37	18	67684697	67684697	+	Missense_Mutation	SNP	T	T	A			TCGA-D8-A1JH-01A-11D-A188-09	TCGA-D8-A1JH-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f59481d-be89-4361-8cc3-3f1d46702016	68f2e564-b0dc-4e75-bc4d-9d849d9ac596	18	67684697	67684697	T	A	SNP	RTTN	ENST00000255674	human	ensembl	69_37n	-1	known	missense	c.6367	p.I2123F	0.992	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	RTTN	HGNC	ENSG00000176225	75	0	0.00	64	14	17.95	-	-	-
SUPT16H	0	genome.wustl.edu	37	14	21836478	21836478	+	Missense_Mutation	SNP	T	T	C			TCGA-D8-A1JH-01A-11D-A188-09	TCGA-D8-A1JH-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f59481d-be89-4361-8cc3-3f1d46702016	68f2e564-b0dc-4e75-bc4d-9d849d9ac596	14	21836478	21836478	T	C	SNP	SUPT16H	ENST00000216297	human	ensembl	69_37n	-1	known	missense	c.905	p.Y302C	1.000	pfam_Pept_M24_structural-domain,superfamily_Pept_M24_structural-domain	pfam_FACT_Spt16p,pfam_Pept_M24_structural-domain,pfam_DUF1747,superfamily_Pept_M24_structural-domain	-	no_errors	SUPT16H	HGNC	ENSG00000092201	50	0	0.00	46	14	23.33	-	-	-
TBP	0	genome.wustl.edu	37	6	170871052	170871052	+	Silent	SNP	G	G	A			TCGA-D8-A1JH-01A-11D-A188-09	TCGA-D8-A1JH-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f59481d-be89-4361-8cc3-3f1d46702016	68f2e564-b0dc-4e75-bc4d-9d849d9ac596	6	170871052	170871052	G	A	SNP	TBP	ENST00000230354	human	ensembl	69_37n	+1	known	silent	c.228	p.Q76	0.994	NULL	pfam_TBP,prints_TBP	-	no_errors	TBP	HGNC	ENSG00000112592	10	0	0.00	58	15	20.55	-	-	-
