Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
ANK2	0	genome.wustl.edu	37	4	114158316	114158316	+	Silent	SNP	C	C	T			TCGA-D8-A27L-01A-11D-A16D-09	TCGA-D8-A27L-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	10666107-dffb-4c51-b3ee-71e70cde7c88	39acbfee-141d-4c6a-bf04-abb40344659f	4	114158316	114158316	C	T	SNP	ANK2	ENST00000357077	human	ensembl	69_37n	+1	known	silent	c.657	p.D219	0.994	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like,smart_Ankyrin_rpt,smart_ZU5,smart_Death,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK2	HGNC	ENSG00000145362	48	0	0.00	53	10	15.87	-	-	-
ATP13A2	0	genome.wustl.edu	37	1	17316666	17316666	+	Missense_Mutation	SNP	C	C	T			TCGA-D8-A27L-01A-11D-A16D-09	TCGA-D8-A27L-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	10666107-dffb-4c51-b3ee-71e70cde7c88	39acbfee-141d-4c6a-bf04-abb40344659f	1	17316666	17316666	C	T	SNP	ATP13A2	ENST00000326735	human	ensembl	69_37n	-1	known	missense	c.2368	p.E790K	0.568	superfamily_HAD-like_dom,tigrfam_ATPase_P-typ_unknown-pump-sp	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_unknown-pump-sp,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP13A2	HGNC	ENSG00000159363	11	0	0.00	11	4	26.67	-	-	-
AZI2	0	genome.wustl.edu	37	3	28381965	28381965	+	Missense_Mutation	SNP	G	G	C			TCGA-D8-A27L-01A-11D-A16D-09	TCGA-D8-A27L-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	10666107-dffb-4c51-b3ee-71e70cde7c88	39acbfee-141d-4c6a-bf04-abb40344659f	3	28381965	28381965	G	C	SNP	AZI2	ENST00000479665	human	ensembl	69_37n	-1	known	missense	c.144	p.I48M	1.000	NULL	NULL	-	no_errors	AZI2	HGNC	ENSG00000163512	139	0	0.00	135	15	10.00	-	-	-
C5orf22	0	genome.wustl.edu	37	5	31545752	31545752	+	Splice_Site	SNP	G	G	A			TCGA-D8-A27L-01A-11D-A16D-09	TCGA-D8-A27L-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	10666107-dffb-4c51-b3ee-71e70cde7c88	39acbfee-141d-4c6a-bf04-abb40344659f	5	31545752	31545752	G	A	SNP	C5orf22	ENST00000325366	human	ensembl	69_37n	+1	known	splice_site	c.993-1	e7-1	1.000	-	-	-	no_errors	C5orf22	HGNC	ENSG00000082213	180	0	0.00	159	49	23.56	-	-	-
CAD	0	genome.wustl.edu	37	2	27447710	27447710	+	Missense_Mutation	SNP	A	A	G			TCGA-D8-A27L-01A-11D-A16D-09	TCGA-D8-A27L-10A-01D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	10666107-dffb-4c51-b3ee-71e70cde7c88	39acbfee-141d-4c6a-bf04-abb40344659f	2	27447710	27447710	A	G	SNP	CAD	ENST00000264705	human	ensembl	69_37n	+1	known	missense	c.1352	p.Y451C	1.000	pfam_CarbamoylP_synth_lsu_N,superfamily_PreATP-grasp_fold,tigrfam_CarbamoylP_synth_lsu	pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_CarbamoylP_synth_ssu_N,pfam_Asp/Orn_carbamoyltranf_P-bd,pfam_GATASE_1,pfam_Asp_carbamoyltransf_Asp/Orn-bd,pfam_CarbamoylP_synth_lsu_oligo,pfam_CarbamoylP_synth_lsu_N,pfam_ATP-grasp_carboxylate-amine,pfam_MGS-like_dom,pfam_Dala_Dala_lig_C,pfam_Amidohydro_1,superfamily_Asp/Orn_carbamoylTrfase,superfamily_CarbamoylP_synth_lsu_oligo,superfamily_CarbamoylP_synth_ssu_N,superfamily_PreATP-grasp_fold,superfamily_MGS-like_dom,superfamily_Metal-dep_hydrolase_composite,smart_MGS-like_dom,pfscan_ATP-grasp,prints_CbamoylP_synth_lsu_CPSase_dom,prints_Asp_carbamoyltransf_euk,prints_Asp/Orn_carbamoylTrfase,tigrfam_CarbamoylP_synth_lsu,tigrfam_CarbamoylP_synth_ssu,tigrfam_Asp_carbamoyltransf_euk	-	no_errors	CAD	HGNC	ENSG00000084774	92	0	0.00	76	22	22.45	-	-	-
FAM131B	0	genome.wustl.edu	37	7	143056010	143056010	+	Missense_Mutation	SNP	G	G	C			TCGA-D8-A27L-01A-11D-A16D-09	TCGA-D8-A27L-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	10666107-dffb-4c51-b3ee-71e70cde7c88	39acbfee-141d-4c6a-bf04-abb40344659f	7	143056010	143056010	G	C	SNP	FAM131B	ENST00000443739	human	ensembl	69_37n	-1	known	missense	c.376	p.Q126E	1.000	NULL	NULL	-	no_errors	FAM131B	HGNC	ENSG00000159784	41	0	0.00	38	5	11.63	-	-	-
FOXP1	0	genome.wustl.edu	37	3	71021818	71021818	+	Missense_Mutation	SNP	G	G	A			TCGA-D8-A27L-01A-11D-A16D-09	TCGA-D8-A27L-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	10666107-dffb-4c51-b3ee-71e70cde7c88	39acbfee-141d-4c6a-bf04-abb40344659f	3	71021818	71021818	G	A	SNP	FOXP1	ENST00000318789	human	ensembl	69_37n	-1	known	missense	c.1540	p.R514C	1.000	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXP1	HGNC	ENSG00000114861	410	0	0.00	286	85	22.79	-	-	-
FRMPD4	0	genome.wustl.edu	37	X	12736552	12736552	+	Missense_Mutation	SNP	C	C	A			TCGA-D8-A27L-01A-11D-A16D-09	TCGA-D8-A27L-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	10666107-dffb-4c51-b3ee-71e70cde7c88	39acbfee-141d-4c6a-bf04-abb40344659f	X	12736552	12736552	C	A	SNP	FRMPD4	ENST00000380682	human	ensembl	69_37n	+1	known	missense	c.3607	p.Q1203K	1.000	NULL	pfam_FERM_central,pfam_PDZ,superfamily_FERM_central,superfamily_PDZ,smart_PDZ,smart_Band_41_domain,pfscan_FERM_domain,pfscan_PDZ,pfscan_WW_Rsp5_WWP	-	no_errors	FRMPD4	HGNC	ENSG00000169933	32	0	0.00	48	17	26.15	-	-	-
GREB1L	0	genome.wustl.edu	37	18	19088425	19088425	+	Silent	SNP	C	C	T			TCGA-D8-A27L-01A-11D-A16D-09	TCGA-D8-A27L-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	10666107-dffb-4c51-b3ee-71e70cde7c88	39acbfee-141d-4c6a-bf04-abb40344659f	18	19088425	19088425	C	T	SNP	GREB1L	ENST00000424526	human	ensembl	69_37n	+1	known	silent	c.4608	p.H1536	0.998	NULL	NULL	-	no_errors	GREB1L	HGNC	ENSG00000141449	45	0	0.00	50	8	13.79	-	-	-
HS3ST1	0	genome.wustl.edu	37	4	11401382	11401382	+	Missense_Mutation	SNP	G	G	A			TCGA-D8-A27L-01A-11D-A16D-09	TCGA-D8-A27L-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	10666107-dffb-4c51-b3ee-71e70cde7c88	39acbfee-141d-4c6a-bf04-abb40344659f	4	11401382	11401382	G	A	SNP	HS3ST1	ENST00000002596	human	ensembl	69_37n	-1	known	missense	c.248	p.A83V	1.000	pfam_Sulfotransferase_dom	pfam_Sulfotransferase_dom	-	no_errors	HS3ST1	HGNC	ENSG00000002587	8	0	0.00	13	6	31.58	-	-	-
HS6ST1	0	genome.wustl.edu	37	2	129075877	129075877	+	Missense_Mutation	SNP	G	G	T			TCGA-D8-A27L-01A-11D-A16D-09	TCGA-D8-A27L-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	10666107-dffb-4c51-b3ee-71e70cde7c88	39acbfee-141d-4c6a-bf04-abb40344659f	2	129075877	129075877	G	T	SNP	HS6ST1	ENST00000259241	human	ensembl	69_37n	-1	known	missense	c.261	p.D87E	1.000	pfam_Sulfotransferase	pfam_Sulfotransferase	-	no_errors	HS6ST1	HGNC	ENSG00000136720	8	0	0.00	3	6	66.67	-	-	-
KANSL3	0	genome.wustl.edu	37	2	97268573	97268573	+	Missense_Mutation	SNP	G	G	C			TCGA-D8-A27L-01A-11D-A16D-09	TCGA-D8-A27L-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	10666107-dffb-4c51-b3ee-71e70cde7c88	39acbfee-141d-4c6a-bf04-abb40344659f	2	97268573	97268573	G	C	SNP	KANSL3	ENST00000431828	human	ensembl	69_37n	-1	known	missense	c.2176	p.Q726E	1.000	NULL	NULL	-	no_errors	KANSL3	HGNC	ENSG00000114982	68	0	0.00	68	14	17.07	-	-	-
KAT8	0	genome.wustl.edu	37	16	31141789	31141789	+	Missense_Mutation	SNP	C	C	T			TCGA-D8-A27L-01A-11D-A16D-09	TCGA-D8-A27L-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	10666107-dffb-4c51-b3ee-71e70cde7c88	39acbfee-141d-4c6a-bf04-abb40344659f	16	31141789	31141789	C	T	SNP	KAT8	ENST00000448516	human	ensembl	69_37n	+1	known	missense	c.1019	p.S340F	1.000	pfam_MOZ_SAS,superfamily_Acyl_CoA_acyltransferase	pfam_MOZ_SAS,pfam_Tudor-knot,superfamily_Acyl_CoA_acyltransferase,superfamily_Chromodomain-like,smart_Chromo_domain/shadow	-	no_errors	KAT8	HGNC	ENSG00000103510	25	0	0.00	30	13	30.23	-	-	-
KDM3A	0	genome.wustl.edu	37	2	86709187	86709187	+	Missense_Mutation	SNP	G	G	A			TCGA-D8-A27L-01A-11D-A16D-09	TCGA-D8-A27L-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	10666107-dffb-4c51-b3ee-71e70cde7c88	39acbfee-141d-4c6a-bf04-abb40344659f	2	86709187	86709187	G	A	SNP	KDM3A	ENST00000312912	human	ensembl	69_37n	+1	known	missense	c.2647	p.G883S	1.000	NULL	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	-	no_errors	KDM3A	HGNC	ENSG00000115548	153	0	0.00	165	41	19.90	-	-	-
LRRC15	0	genome.wustl.edu	37	3	194080618	194080618	+	Silent	SNP	G	G	A			TCGA-D8-A27L-01A-11D-A16D-09	TCGA-D8-A27L-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	10666107-dffb-4c51-b3ee-71e70cde7c88	39acbfee-141d-4c6a-bf04-abb40344659f	3	194080618	194080618	G	A	SNP	LRRC15	ENST00000439944	human	ensembl	69_37n	-1	known	silent	c.1173	p.F391	0.002	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	LRRC15	HGNC	ENSG00000172061	83	0	0.00	55	16	22.54	-	-	-
LRRC15	0	genome.wustl.edu	37	3	194080750	194080750	+	Silent	SNP	C	C	T			TCGA-D8-A27L-01A-11D-A16D-09	TCGA-D8-A27L-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	10666107-dffb-4c51-b3ee-71e70cde7c88	39acbfee-141d-4c6a-bf04-abb40344659f	3	194080750	194080750	C	T	SNP	LRRC15	ENST00000439944	human	ensembl	69_37n	-1	known	silent	c.1041	p.T347	0.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	LRRC15	HGNC	ENSG00000172061	50	0	0.00	44	7	13.73	-	-	-
MAP3K1	0	genome.wustl.edu	37	5	56180536	56180537	+	Frame_Shift_Ins	INS	-	-	A			TCGA-D8-A27L-01A-11D-A16D-09	TCGA-D8-A27L-10A-01D-A16D-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	10666107-dffb-4c51-b3ee-71e70cde7c88	39acbfee-141d-4c6a-bf04-abb40344659f	5	56180536	56180537	-	A	INS	MAP3K1	ENST00000399503	human	ensembl	69_37n	+1	novel	frame_shift_ins	c.3865_3866	p.A1290fs	1.000:1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_RING,pfscan_Znf_SWIM,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K1	HGNC	ENSG00000095015	71	0	0.00	71	17	19.32	-	-	-
MAP3K1	0	genome.wustl.edu	37	5	56180586	56180588	+	In_Frame_Del	DEL	CAT	CAT	-			TCGA-D8-A27L-01A-11D-A16D-09	TCGA-D8-A27L-10A-01D-A16D-09	CAT	CAT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	10666107-dffb-4c51-b3ee-71e70cde7c88	39acbfee-141d-4c6a-bf04-abb40344659f	5	56180586	56180588	CAT	-	DEL	MAP3K1	ENST00000399503	human	ensembl	69_37n	+1	novel	in_frame_del	c.3915_3917	p.I1307in_frame_del	1.000:1.000:1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_RING,pfscan_Znf_SWIM,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K1	HGNC	ENSG00000095015	75	0	0.00	84	13	13.27	-	-	-
MASP1	0	genome.wustl.edu	37	3	186953790	186953790	+	Silent	SNP	G	G	A			TCGA-D8-A27L-01A-11D-A16D-09	TCGA-D8-A27L-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	10666107-dffb-4c51-b3ee-71e70cde7c88	39acbfee-141d-4c6a-bf04-abb40344659f	3	186953790	186953790	G	A	SNP	MASP1	ENST00000296280	human	ensembl	69_37n	-1	known	silent	c.1869	p.P623	0.005	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6	pfam_Peptidase_S1_S6,pfam_CUB,pfam_Sushi_SCR_CCP,pfam_EGF-like_Ca-bd,superfamily_Pept_cys/ser_Trypsin-like,superfamily_CUB,superfamily_Complement_control_module,smart_CUB,smart_EGF-like_Ca-bd,smart_Sushi_SCR_CCP,smart_Peptidase_S1_S6,prints_Peptidase_S1A,pfscan_CUB,pfscan_Sushi_SCR_CCP,pfscan_Peptidase_S1_S6	-	no_errors	MASP1	HGNC	ENSG00000127241	53	0	0.00	51	17	25.00	-	-	-
MGAM	0	genome.wustl.edu	37	7	141785701	141785701	+	Silent	SNP	C	C	T			TCGA-D8-A27L-01A-11D-A16D-09	TCGA-D8-A27L-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	10666107-dffb-4c51-b3ee-71e70cde7c88	39acbfee-141d-4c6a-bf04-abb40344659f	7	141785701	141785701	C	T	SNP	MGAM	ENST00000475668	human	ensembl	69_37n	+1	putative	silent	c.6579	p.A2193	0.000	pfam_Glyco_hydro_31,superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_31,pfam_P_trefoil,superfamily_Glycoside_hydrolase_SF,superfamily_Glyco_hydro-type_carb-bd,smart_P_trefoil	-	no_errors	MGAM	HGNC	ENSG00000257335	32	0	0.00	26	13	33.33	-	-	-
NAV1	0	genome.wustl.edu	37	1	201772760	201772760	+	Nonsense_Mutation	SNP	C	C	G			TCGA-D8-A27L-01A-11D-A16D-09	TCGA-D8-A27L-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	10666107-dffb-4c51-b3ee-71e70cde7c88	39acbfee-141d-4c6a-bf04-abb40344659f	1	201772760	201772760	C	G	SNP	NAV1	ENST00000367296	human	ensembl	69_37n	+1	known	nonsense	c.3557	p.S1186*	1.000	NULL	smart_AAA+_ATPase	-	no_errors	NAV1	HGNC	ENSG00000134369	58	0	0.00	65	9	10.59	-	-	-
NEIL1	0	genome.wustl.edu	37	15	75641328	75641328	+	Missense_Mutation	SNP	G	G	A			TCGA-D8-A27L-01A-11D-A16D-09	TCGA-D8-A27L-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	10666107-dffb-4c51-b3ee-71e70cde7c88	39acbfee-141d-4c6a-bf04-abb40344659f	15	75641328	75641328	G	A	SNP	NEIL1	ENST00000355059	human	ensembl	69_37n	+1	known	missense	c.82	p.E28K	1.000	pfam_DNA_glycosylase/AP_lyase_cat,superfamily_DNA_glycosylase/AP_lyase_cat,smart_DNA_glycosylase/AP_lyase_cat,pfscan_DNA_glycosylase/AP_lyase_cat	pfam_Endonuclease-VIII_DNA-bd,pfam_DNA_glycosylase/AP_lyase_cat,pfam_DNA_glyclase/AP_lyase_DNA-bd,superfamily_DNA_glycosylase/AP_lyase_cat,superfamily_Ribosomal_S13-like_H2TH,smart_DNA_glycosylase/AP_lyase_cat,pfscan_DNA_glycosylase/AP_lyase_cat	-	no_errors	NEIL1	HGNC	ENSG00000140398	9	0	0.00	11	8	42.11	-	-	-
NPAS1	0	genome.wustl.edu	37	19	47535538	47535538	+	Missense_Mutation	SNP	C	C	T			TCGA-D8-A27L-01A-11D-A16D-09	TCGA-D8-A27L-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	10666107-dffb-4c51-b3ee-71e70cde7c88	39acbfee-141d-4c6a-bf04-abb40344659f	19	47535538	47535538	C	T	SNP	NPAS1	ENST00000449844	human	ensembl	69_37n	+1	known	missense	c.361	p.P121S	0.980	NULL	pfam_PAS_fold_3,pfam_PAS_fold,pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,smart_PAS,pfscan_PAS,pfscan_HLH_DNA-bd	-	no_errors	NPAS1	HGNC	ENSG00000130751	18	0	0.00	11	5	31.25	-	-	-
OTUB1	0	genome.wustl.edu	37	11	63764394	63764394	+	Missense_Mutation	SNP	T	T	C			TCGA-D8-A27L-01A-11D-A16D-09	TCGA-D8-A27L-10A-01D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	10666107-dffb-4c51-b3ee-71e70cde7c88	39acbfee-141d-4c6a-bf04-abb40344659f	11	63764394	63764394	T	C	SNP	OTUB1	ENST00000422031	human	ensembl	69_37n	+1	known	missense	c.515	p.I172T	1.000	pfam_Peptidase_C65_otubain,pfam_OTU,pirsf_Ubiquitin_thioesterase_Otubain,pfscan_OTU	pfam_Peptidase_C65_otubain,pfam_OTU,pirsf_Ubiquitin_thioesterase_Otubain,pfscan_OTU	-	no_errors	OTUB1	HGNC	ENSG00000167770	60	0	0.00	32	9	21.95	-	-	-
PAK3	0	genome.wustl.edu	37	X	110385364	110385364	+	Silent	SNP	T	T	A			TCGA-D8-A27L-01A-11D-A16D-09	TCGA-D8-A27L-10A-01D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	10666107-dffb-4c51-b3ee-71e70cde7c88	39acbfee-141d-4c6a-bf04-abb40344659f	X	110385364	110385364	T	A	SNP	PAK3	ENST00000360648	human	ensembl	69_37n	+1	known	silent	c.216	p.L72	1.000	pfam_PAK_box_Rho-bd,smart_PAK_box_Rho-bd,pfscan_PAK_box_Rho-bd	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PAK_box_Rho-bd,superfamily_Kinase-like_dom,smart_PAK_box_Rho-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_PAK_box_Rho-bd,pfscan_Prot_kinase_cat_dom	-	no_errors	PAK3	HGNC	ENSG00000077264	170	0	0.00	183	27	12.86	-	-	-
PCDHGB6	0	genome.wustl.edu	37	5	140788421	140788421	+	Missense_Mutation	SNP	G	G	A			TCGA-D8-A27L-01A-11D-A16D-09	TCGA-D8-A27L-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	10666107-dffb-4c51-b3ee-71e70cde7c88	39acbfee-141d-4c6a-bf04-abb40344659f	5	140788421	140788421	G	A	SNP	PCDHGB6	ENST00000520790	human	ensembl	69_37n	+1	known	missense	c.652	p.G218R	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGB6	HGNC	ENSG00000253305	49	0	0.00	26	9	25.71	-	-	-
PIK3CA	0	genome.wustl.edu	37	3	178936091	178936091	+	Missense_Mutation	SNP	G	G	A			TCGA-D8-A27L-01A-11D-A16D-09	TCGA-D8-A27L-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	10666107-dffb-4c51-b3ee-71e70cde7c88	39acbfee-141d-4c6a-bf04-abb40344659f	3	178936091	178936091	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	+1	known	missense	c.1633	p.E545K	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	117	0	0.00	63	25	28.09	-	-	-
POM121L9P	0	genome.wustl.edu	37	22	24659633	24659633	+	RNA	SNP	G	G	A			TCGA-D8-A27L-01A-11D-A16D-09	TCGA-D8-A27L-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	10666107-dffb-4c51-b3ee-71e70cde7c88	39acbfee-141d-4c6a-bf04-abb40344659f	22	24659633	24659633	G	A	SNP	POM121L9P	ENST00000414583	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.997	-	-	-	no_errors	POM121L9P	HGNC	ENSG00000128262	11	0	0.00	7	5	41.67	-	-	-
PPRC1	0	genome.wustl.edu	37	10	103908402	103908402	+	Missense_Mutation	SNP	C	C	T			TCGA-D8-A27L-01A-11D-A16D-09	TCGA-D8-A27L-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	10666107-dffb-4c51-b3ee-71e70cde7c88	39acbfee-141d-4c6a-bf04-abb40344659f	10	103908402	103908402	C	T	SNP	PPRC1	ENST00000278070	human	ensembl	69_37n	+1	known	missense	c.4568	p.S1523L	0.024	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	PPRC1	HGNC	ENSG00000148840	85	0	0.00	68	36	34.62	-	-	-
PTEN	0	genome.wustl.edu	37	10	89624271	89624272	+	Frame_Shift_Ins	INS	-	-	T			TCGA-D8-A27L-01A-11D-A16D-09	TCGA-D8-A27L-10A-01D-A16D-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	10666107-dffb-4c51-b3ee-71e70cde7c88	39acbfee-141d-4c6a-bf04-abb40344659f	10	89624271	89624272	-	T	INS	PTEN	ENST00000371953	human	ensembl	69_37n	+1	known	frame_shift_ins	c.45_46	p.Y15fs	1.000:1.000	pirsf_Bifunc_PIno_P3_Pase/Pase_PTEN,pfscan_Phosphatase_tensin-typ	pfam_Tensin_phosphatase_C2-dom,pfam_Dual-sp_phosphatase_cat-dom,pfam_Tyr_Pase_rcpt/non-rcpt,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Tyr_Pase_cat,pirsf_Bifunc_PIno_P3_Pase/Pase_PTEN,pfscan_Tyr/Dual-specificity_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	PTEN	HGNC	ENSG00000171862	143	0	0.00	117	35	23.03	-	-	-
RERE	0	genome.wustl.edu	37	1	8426006	8426006	+	Nonsense_Mutation	SNP	C	C	T			TCGA-D8-A27L-01A-11D-A16D-09	TCGA-D8-A27L-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	10666107-dffb-4c51-b3ee-71e70cde7c88	39acbfee-141d-4c6a-bf04-abb40344659f	1	8426006	8426006	C	T	SNP	RERE	ENST00000337907	human	ensembl	69_37n	-1	known	nonsense	c.1313	p.W438*	1.000	superfamily_Homeodomain-like,smart_SANT/Myb	pfam_Atrophin-like,pfam_BAH_dom,pfam_ELM2_dom,pfam_Znf_GATA,superfamily_Homeodomain-like,smart_BAH_dom,smart_SANT/Myb,smart_Znf_GATA,pfscan_BAH_dom,pfscan_ELM2_dom	-	no_errors	RERE	HGNC	ENSG00000142599	52	0	0.00	44	8	15.38	-	-	-
RHOT2	0	genome.wustl.edu	37	16	723516	723516	+	Silent	SNP	C	C	T			TCGA-D8-A27L-01A-11D-A16D-09	TCGA-D8-A27L-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	10666107-dffb-4c51-b3ee-71e70cde7c88	39acbfee-141d-4c6a-bf04-abb40344659f	16	723516	723516	C	T	SNP	RHOT2	ENST00000315082	human	ensembl	69_37n	+1	known	silent	c.1767	p.F589	1.000	pirsf_Small_GTPase_Miro	pirsf_Small_GTPase_Miro,pfam_EF_hand_assoc_2,pfam_MIRO-like,pfam_EF_hand_assoc_1,pfam_Small_GTPase,pfam_Small_GTPase_ARF/SAR,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,pfscan_EF_HAND_2	-	no_errors	RHOT2	HGNC	ENSG00000140983	31	0	0.00	34	17	33.33	-	-	-
SGK2	0	genome.wustl.edu	37	20	42195054	42195054	+	Missense_Mutation	SNP	G	G	A			TCGA-D8-A27L-01A-11D-A16D-09	TCGA-D8-A27L-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	10666107-dffb-4c51-b3ee-71e70cde7c88	39acbfee-141d-4c6a-bf04-abb40344659f	20	42195054	42195054	G	A	SNP	SGK2	ENST00000341458	human	ensembl	69_37n	+1	known	missense	c.99	p.M33I	0.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Prot_kinase_cat_dom	-	no_errors	SGK2	HGNC	ENSG00000101049	60	0	0.00	90	26	22.41	-	-	-
TMPRSS6	0	genome.wustl.edu	37	22	37482397	37482397	+	Missense_Mutation	SNP	G	G	A			TCGA-D8-A27L-01A-11D-A16D-09	TCGA-D8-A27L-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	10666107-dffb-4c51-b3ee-71e70cde7c88	39acbfee-141d-4c6a-bf04-abb40344659f	22	37482397	37482397	G	A	SNP	TMPRSS6	ENST00000381792	human	ensembl	69_37n	-1	known	missense	c.899	p.A300V	0.972	pirsf_Pept_S1A_matriptase-2,superfamily_CUB	pirsf_Pept_S1A_matriptase-2,pfam_Peptidase_S1_S6,pfam_LDrepeatLR_classA_rpt,pfam_SEA,pfam_Peptidase_S1A_nudel,superfamily_Pept_cys/ser_Trypsin-like,superfamily_CUB,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_Peptidase_S1_S6,prints_Peptidase_S1A,pfscan_CUB,pfscan_LDrepeatLR_classA_rpt,pfscan_Peptidase_S1_S6	-	no_errors	TMPRSS6	HGNC	ENSG00000187045	13	0	0.00	14	5	26.32	-	-	-
ZNF254	0	genome.wustl.edu	37	19	24270126	24270126	+	Missense_Mutation	SNP	G	G	A			TCGA-D8-A27L-01A-11D-A16D-09	TCGA-D8-A27L-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	10666107-dffb-4c51-b3ee-71e70cde7c88	39acbfee-141d-4c6a-bf04-abb40344659f	19	24270126	24270126	G	A	SNP	ZNF254	ENST00000357002	human	ensembl	69_37n	+1	known	missense	c.17	p.R6K	0.004	superfamily_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF254	HGNC	ENSG00000213096	105	0	0.00	79	13	14.13	-	-	-
ZNF417	0	genome.wustl.edu	37	19	58423433	58423433	+	Missense_Mutation	SNP	G	G	A			TCGA-D8-A27L-01A-11D-A16D-09	TCGA-D8-A27L-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	10666107-dffb-4c51-b3ee-71e70cde7c88	39acbfee-141d-4c6a-bf04-abb40344659f	19	58423433	58423433	G	A	SNP	ZNF417	ENST00000312026	human	ensembl	69_37n	-1	known	missense	c.158	p.S53L	0.257	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF417	HGNC	ENSG00000173480	150	0	0.00	142	23	13.94	-	-	-
ZNF483	0	genome.wustl.edu	37	9	114290002	114290002	+	Silent	SNP	G	G	A			TCGA-D8-A27L-01A-11D-A16D-09	TCGA-D8-A27L-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	10666107-dffb-4c51-b3ee-71e70cde7c88	39acbfee-141d-4c6a-bf04-abb40344659f	9	114290002	114290002	G	A	SNP	ZNF483	ENST00000309235	human	ensembl	69_37n	+1	known	silent	c.327	p.R109	1.000	pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,pfscan_Tscrpt_reg_SCAN	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF483	HGNC	ENSG00000173258	100	0	0.00	79	28	26.17	-	-	-
