Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
ADD2	0	genome.wustl.edu	37	2	70923448	70923448	+	Missense_Mutation	SNP	A	A	G			TCGA-E2-A15R-01A-11D-A10Y-09	TCGA-E2-A15R-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11799240-0275-48fe-84ef-85e188839bbe	463d72c3-0e93-4d3e-b1c8-39827372fa08	2	70923448	70923448	A	G	SNP	ADD2	ENST00000264436	human	ensembl	69_37n	-1	known	missense	c.403	p.C135R	1.000	superfamily_Aldolase_II/adducin_N	pfam_Aldolase_II/adducin_N,superfamily_Aldolase_II/adducin_N	-	no_errors	ADD2	HGNC	ENSG00000075340	210	0	0.00	179	107	37.41	-	-	-
ARHGAP15	0	genome.wustl.edu	37	2	144193247	144193247	+	Missense_Mutation	SNP	C	C	G			TCGA-E2-A15R-01A-11D-A10Y-09	TCGA-E2-A15R-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11799240-0275-48fe-84ef-85e188839bbe	463d72c3-0e93-4d3e-b1c8-39827372fa08	2	144193247	144193247	C	G	SNP	ARHGAP15	ENST00000295095	human	ensembl	69_37n	+1	known	missense	c.552	p.I184M	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_RhoGAP_dom,pfam_Pleckstrin_homology,superfamily_Rho_GTPase_activation_prot,smart_Pleckstrin_homology,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_RhoGAP_dom	-	no_errors	ARHGAP15	HGNC	ENSG00000075884	253	0	0.00	139	100	41.84	-	-	-
ARHGEF12	0	genome.wustl.edu	37	11	120351050	120351050	+	Missense_Mutation	SNP	A	A	T			TCGA-E2-A15R-01A-11D-A10Y-09	TCGA-E2-A15R-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11799240-0275-48fe-84ef-85e188839bbe	463d72c3-0e93-4d3e-b1c8-39827372fa08	11	120351050	120351050	A	T	SNP	ARHGEF12	ENST00000356641	human	ensembl	69_37n	+1	known	missense	c.4091	p.D1364V	1.000	NULL	pfam_Regulat_G_prot_signal-like,pfam_DH-domain,pfam_PDZ,superfamily_Regulat_G_prot_signal_superfam,superfamily_DH-domain,superfamily_PDZ,smart_PDZ,smart_DH-domain,smart_Pleckstrin_homology,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	ARHGEF12	HGNC	ENSG00000196914	238	0	0.00	19	99	83.90	-	-	-
ARSF	0	genome.wustl.edu	37	X	3030432	3030432	+	Silent	SNP	C	C	T			TCGA-E2-A15R-01A-11D-A10Y-09	TCGA-E2-A15R-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11799240-0275-48fe-84ef-85e188839bbe	463d72c3-0e93-4d3e-b1c8-39827372fa08	X	3030432	3030432	C	T	SNP	ARSF	ENST00000359361	human	ensembl	69_37n	+1	known	silent	c.1608	p.N536	0.001	superfamily_Alkaline_phosphatase_core	pfam_Sulfatase,pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core	-	no_errors	ARSF	HGNC	ENSG00000062096	196	0	0.00	102	68	40.00	-	-	-
ASAH1	0	genome.wustl.edu	37	8	17941525	17941525	+	Missense_Mutation	SNP	C	C	A			TCGA-E2-A15R-01A-11D-A10Y-09	TCGA-E2-A15R-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11799240-0275-48fe-84ef-85e188839bbe	463d72c3-0e93-4d3e-b1c8-39827372fa08	8	17941525	17941525	C	A	SNP	ASAH1	ENST00000262097	human	ensembl	69_37n	-1	known	missense	c.43	p.A15S	0.000	pirsf_Acid_ceramidase-like	pfam_Chologlycine_hydro,pirsf_Acid_ceramidase-like	-	no_errors	ASAH1	HGNC	ENSG00000104763	13	0	0.00	10	4	28.57	-	-	-
ASPH	0	genome.wustl.edu	37	8	62555969	62555969	+	Missense_Mutation	SNP	C	C	T			TCGA-E2-A15R-01A-11D-A10Y-09	TCGA-E2-A15R-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11799240-0275-48fe-84ef-85e188839bbe	463d72c3-0e93-4d3e-b1c8-39827372fa08	8	62555969	62555969	C	T	SNP	ASPH	ENST00000379454	human	ensembl	69_37n	-1	known	missense	c.733	p.D245N	0.002	pfam_Asp-B-hydro/Triadin_dom	pfam_Asp-B-hydro/Triadin_dom,pfam_Asp_Arg_b-Hydrxlase,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	ASPH	HGNC	ENSG00000198363	115	0	0.00	155	44	22.00	-	-	-
BPIFB6	0	genome.wustl.edu	37	20	31631125	31631125	+	Silent	SNP	G	G	A			TCGA-E2-A15R-01A-11D-A10Y-09	TCGA-E2-A15R-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11799240-0275-48fe-84ef-85e188839bbe	463d72c3-0e93-4d3e-b1c8-39827372fa08	20	31631125	31631125	G	A	SNP	BPIFB6	ENST00000349552	human	ensembl	69_37n	+1	known	silent	c.1281	p.P427	0.707	pfam_Lipid-bd_serum_glycop_C,superfamily_Bactericidal_perm-incr_a/b_dom,smart_Lipid-bd_serum_glycop_C	pfam_Lipid-bd_serum_glycop_N,pfam_Lipid-bd_serum_glycop_C,superfamily_Bactericidal_perm-incr_a/b_dom,smart_Lipid-bd_serum_glycop_C	-	no_errors	BPIFB6	HGNC	ENSG00000167104	233	0	0.00	242	120	33.15	-	-	-
CADPS	0	genome.wustl.edu	37	3	62467428	62467428	+	Missense_Mutation	SNP	G	G	A			TCGA-E2-A15R-01A-11D-A10Y-09	TCGA-E2-A15R-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11799240-0275-48fe-84ef-85e188839bbe	463d72c3-0e93-4d3e-b1c8-39827372fa08	3	62467428	62467428	G	A	SNP	CADPS	ENST00000383710	human	ensembl	69_37n	-1	known	missense	c.3143	p.P1048L	1.000	NULL	pfam_Ca-dep_secretion_activator,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	CADPS	HGNC	ENSG00000163618	348	0	0.00	174	126	41.86	-	-	-
CSNK1A1L	0	genome.wustl.edu	37	13	37678978	37678978	+	Missense_Mutation	SNP	G	G	T			TCGA-E2-A15R-01A-11D-A10Y-09	TCGA-E2-A15R-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11799240-0275-48fe-84ef-85e188839bbe	463d72c3-0e93-4d3e-b1c8-39827372fa08	13	37678978	37678978	G	T	SNP	CSNK1A1L	ENST00000379800	human	ensembl	69_37n	-1	known	missense	c.416	p.P139Q	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CSNK1A1L	HGNC	ENSG00000180138	600	0	0.00	89	197	68.64	-	-	-
CXCR3	0	genome.wustl.edu	37	X	70836846	70836846	+	Missense_Mutation	SNP	A	A	T			TCGA-E2-A15R-01A-11D-A10Y-09	TCGA-E2-A15R-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11799240-0275-48fe-84ef-85e188839bbe	463d72c3-0e93-4d3e-b1c8-39827372fa08	X	70836846	70836846	A	T	SNP	CXCR3	ENST00000373691	human	ensembl	69_37n	-1	known	missense	c.617	p.L206H	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Chemokine_CXCR3,prints_Chemokine_CXCR4	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Chemokine_CXCR3,prints_7TM_GPCR_Rhodpsn,prints_Chemokine_CXCR4,prints_Chemokine_rcpt,prints_ATII_rcpt	-	no_errors	CXCR3	HGNC	ENSG00000186810	38	0	0.00	32	21	39.62	-	-	-
DEDD2	0	genome.wustl.edu	37	19	42703632	42703632	+	Silent	SNP	C	C	T			TCGA-E2-A15R-01A-11D-A10Y-09	TCGA-E2-A15R-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11799240-0275-48fe-84ef-85e188839bbe	463d72c3-0e93-4d3e-b1c8-39827372fa08	19	42703632	42703632	C	T	SNP	DEDD2	ENST00000336034	human	ensembl	69_37n	-1	known	silent	c.939	p.L313	0.996	NULL	pfam_DED,superfamily_DEATH-like,smart_DED,pfscan_DED	-	no_errors	DEDD2	HGNC	ENSG00000160570	29	0	0.00	24	12	33.33	-	-	-
DIO2	0	genome.wustl.edu	37	14	80669412	80669412	+	Nonsense_Mutation	SNP	C	C	T			TCGA-E2-A15R-01A-11D-A10Y-09	TCGA-E2-A15R-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11799240-0275-48fe-84ef-85e188839bbe	463d72c3-0e93-4d3e-b1c8-39827372fa08	14	80669412	80669412	C	T	SNP	DIO2	ENST00000557125	human	ensembl	69_37n	-1	putative	nonsense	c.66	p.W22*	1.000	NULL	NULL	-	no_errors	DIO2	HGNC	ENSG00000211448	171	0	0.00	122	84	40.78	-	-	-
ELF3	0	genome.wustl.edu	37	1	201980286	201980286	+	Missense_Mutation	SNP	A	A	G			TCGA-E2-A15R-01A-11D-A10Y-09	TCGA-E2-A15R-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11799240-0275-48fe-84ef-85e188839bbe	463d72c3-0e93-4d3e-b1c8-39827372fa08	1	201980286	201980286	A	G	SNP	ELF3	ENST00000359651	human	ensembl	69_37n	+1	known	missense	c.22	p.S8G	0.998	NULL	pfam_Ets,pfam_Pointed_dom,superfamily_SAM/pointed,smart_Pointed_dom,smart_Ets,pfscan_Ets,prints_Ets	-	no_errors	ELF3	HGNC	ENSG00000163435	186	1	0.53	111	150	57.25	-	-	-
FAM98C	0	genome.wustl.edu	37	19	38899502	38899504	+	In_Frame_Del	DEL	AAG	AAG	-			TCGA-E2-A15R-01A-11D-A10Y-09	TCGA-E2-A15R-10A-01D-A110-09	AAG	AAG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11799240-0275-48fe-84ef-85e188839bbe	463d72c3-0e93-4d3e-b1c8-39827372fa08	19	38899502	38899504	AAG	-	DEL	FAM98C	ENST00000252530	human	ensembl	69_37n	+1	known	in_frame_del	c.1030_1032	p.K347in_frame_del	0.830:0.873:0.987	NULL	pfam_Uncharacterised_FAM98	-	no_errors	FAM98C	HGNC	ENSG00000130244	50	0	0.00	26	4	13.33	-	-	-
GCH1	0	genome.wustl.edu	37	14	55369216	55369216	+	Missense_Mutation	SNP	C	C	T			TCGA-E2-A15R-01A-11D-A10Y-09	TCGA-E2-A15R-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11799240-0275-48fe-84ef-85e188839bbe	463d72c3-0e93-4d3e-b1c8-39827372fa08	14	55369216	55369216	C	T	SNP	GCH1	ENST00000395514	human	ensembl	69_37n	-1	known	missense	c.166	p.E56K	0.738	NULL	pfam_GTP_CycHdrlase_I/CN_OxRdtase,tigrfam_GTP_CycHdrlase_I	-	no_errors	GCH1	HGNC	ENSG00000131979	25	0	0.00	13	17	56.67	-	-	-
GHRLOS2	0	genome.wustl.edu	37	3	10327073	10327073	+	RNA	SNP	G	G	A			TCGA-E2-A15R-01A-11D-A10Y-09	TCGA-E2-A15R-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11799240-0275-48fe-84ef-85e188839bbe	463d72c3-0e93-4d3e-b1c8-39827372fa08	3	10327073	10327073	G	A	SNP	GHRLOS2	ENST00000475197	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	GHRLOS2	HGNC	ENSG00000231177	103	0	0.00	49	19	27.94	-	-	-
KCTD9	0	genome.wustl.edu	37	8	25292958	25292958	+	Missense_Mutation	SNP	A	A	G			TCGA-E2-A15R-01A-11D-A10Y-09	TCGA-E2-A15R-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11799240-0275-48fe-84ef-85e188839bbe	463d72c3-0e93-4d3e-b1c8-39827372fa08	8	25292958	25292958	A	G	SNP	KCTD9	ENST00000221200	human	ensembl	69_37n	-1	known	missense	c.734	p.L245S	1.000	pfam_5peptide_repeat	pfam_5peptide_repeat,pfam_T1-type_BTB,pfam_K_channel_plant,pfam_BTB_POZ,superfamily_BTB/POZ_fold,superfamily_Doublecortin_dom,smart_BTB/POZ-like,pfscan_BTB/POZ-like	-	no_errors	KCTD9	HGNC	ENSG00000104756	244	0	0.00	21	64	67.37	-	-	-
KIFC1	0	genome.wustl.edu	37	6	33374648	33374648	+	Missense_Mutation	SNP	C	C	T			TCGA-E2-A15R-01A-11D-A10Y-09	TCGA-E2-A15R-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11799240-0275-48fe-84ef-85e188839bbe	463d72c3-0e93-4d3e-b1c8-39827372fa08	6	33374648	33374648	C	T	SNP	KIFC1	ENST00000428849	human	ensembl	69_37n	+1	known	missense	c.1973	p.S658F	1.000	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIFC1	HGNC	ENSG00000237649	209	0	0.00	117	104	47.06	-	-	-
LRRC8E	0	genome.wustl.edu	37	19	7964376	7964376	+	Silent	SNP	C	C	T			TCGA-E2-A15R-01A-11D-A10Y-09	TCGA-E2-A15R-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11799240-0275-48fe-84ef-85e188839bbe	463d72c3-0e93-4d3e-b1c8-39827372fa08	19	7964376	7964376	C	T	SNP	LRRC8E	ENST00000306708	human	ensembl	69_37n	+1	known	silent	c.969	p.Y323	0.126	NULL	pfam_LRR_protein-8_N,pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC8E	HGNC	ENSG00000171017	168	0	0.00	107	76	41.53	-	-	-
MTMR4	0	genome.wustl.edu	37	17	56569882	56569882	+	Missense_Mutation	SNP	G	G	A			TCGA-E2-A15R-01A-11D-A10Y-09	TCGA-E2-A15R-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11799240-0275-48fe-84ef-85e188839bbe	463d72c3-0e93-4d3e-b1c8-39827372fa08	17	56569882	56569882	G	A	SNP	MTMR4	ENST00000323456	human	ensembl	69_37n	-1	known	missense	c.3400	p.H1134Y	1.000	pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pfscan_Znf_FYVE-rel	pfam_Myotub-related,pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pfscan_Znf_FYVE-rel,pfscan_Tyr/Dual-specificity_Pase	-	no_errors	MTMR4	HGNC	ENSG00000108389	323	0	0.00	190	144	42.99	-	-	-
NFE2L3	0	genome.wustl.edu	37	7	26225181	26225182	+	Frame_Shift_Ins	INS	-	-	AA			TCGA-E2-A15R-01A-11D-A10Y-09	TCGA-E2-A15R-10A-01D-A110-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11799240-0275-48fe-84ef-85e188839bbe	463d72c3-0e93-4d3e-b1c8-39827372fa08	7	26225181	26225182	-	AA	INS	NFE2L3	ENST00000056233	human	ensembl	69_37n	+1	known	frame_shift_ins	c.1863_1864	p.R621fs	0.000:0.000	pfam_bZIP_1,pfam_bZIP_Maf,pfam_bZIP_2,smart_bZIP,pfscan_bZIP	pfam_bZIP_1,pfam_bZIP_Maf,pfam_bZIP_2,superfamily_Euk_TF_DNA-bd,smart_bZIP,pfscan_bZIP	-	no_errors	NFE2L3	HGNC	ENSG00000050344	73	0	0.00	63	25	28.41	-	-	-
NOM1	0	genome.wustl.edu	37	7	156742517	156742517	+	Missense_Mutation	SNP	G	G	A			TCGA-E2-A15R-01A-11D-A10Y-09	TCGA-E2-A15R-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11799240-0275-48fe-84ef-85e188839bbe	463d72c3-0e93-4d3e-b1c8-39827372fa08	7	156742517	156742517	G	A	SNP	NOM1	ENST00000275820	human	ensembl	69_37n	+1	known	missense	c.86	p.G29E	0.007	NULL	pfam_Initiation_fac_eIF4g_MI,pfam_MIF4G-like_typ-3,superfamily_ARM-type_fold,smart_MIF4G-like_typ-3,smart_Initiation_fac_eIF4g_MI	-	no_errors	NOM1	HGNC	ENSG00000146909	11	0	0.00	6	15	68.18	-	-	-
OPRD1	0	genome.wustl.edu	37	1	29189481	29189481	+	Missense_Mutation	SNP	G	G	A			TCGA-E2-A15R-01A-11D-A10Y-09	TCGA-E2-A15R-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11799240-0275-48fe-84ef-85e188839bbe	463d72c3-0e93-4d3e-b1c8-39827372fa08	1	29189481	29189481	G	A	SNP	OPRD1	ENST00000234961	human	ensembl	69_37n	+1	known	missense	c.805	p.A269T	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_Delta_opi_rcpt,prints_Opioid_rcpt,prints_Neuropept_W_rcpt,prints_Somatstn_rcpt,prints_P2_purnocptor,prints_NPY_rcpt	-	no_errors	OPRD1	HGNC	ENSG00000116329	86	0	0.00	17	69	76.67	-	-	-
OR13D1	0	genome.wustl.edu	37	9	107457129	107457129	+	Nonsense_Mutation	SNP	G	G	T			TCGA-E2-A15R-01A-11D-A10Y-09	TCGA-E2-A15R-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11799240-0275-48fe-84ef-85e188839bbe	463d72c3-0e93-4d3e-b1c8-39827372fa08	9	107457129	107457129	G	T	SNP	OR13D1	ENST00000318763	human	ensembl	69_37n	+1	known	nonsense	c.427	p.E143*	0.286	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR13D1	HGNC	ENSG00000179055	408	0	0.00	214	163	43.24	-	-	-
OR52I2	0	genome.wustl.edu	37	11	4609000	4609000	+	Missense_Mutation	SNP	C	C	T			TCGA-E2-A15R-01A-11D-A10Y-09	TCGA-E2-A15R-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11799240-0275-48fe-84ef-85e188839bbe	463d72c3-0e93-4d3e-b1c8-39827372fa08	11	4609000	4609000	C	T	SNP	OR52I2	ENST00000312614	human	ensembl	69_37n	+1	known	missense	c.958	p.P320S	0.999	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR52I2	HGNC	ENSG00000226288	391	0	0.00	494	164	24.89	-	-	-
OTUD4	0	genome.wustl.edu	37	4	146062555	146062555	+	Nonsense_Mutation	SNP	G	G	A			TCGA-E2-A15R-01A-11D-A10Y-09	TCGA-E2-A15R-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11799240-0275-48fe-84ef-85e188839bbe	463d72c3-0e93-4d3e-b1c8-39827372fa08	4	146062555	146062555	G	A	SNP	OTUD4	ENST00000447906	human	ensembl	69_37n	-1	known	nonsense	c.2059	p.Q687*	1.000	NULL	pfam_OTU,pfscan_OTU	-	no_errors	OTUD4	HGNC	ENSG00000164164	236	0	0.00	149	102	40.64	-	-	-
PCDHB18	0	genome.wustl.edu	37	5	140615827	140615827	+	RNA	SNP	C	C	T			TCGA-E2-A15R-01A-11D-A10Y-09	TCGA-E2-A15R-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11799240-0275-48fe-84ef-85e188839bbe	463d72c3-0e93-4d3e-b1c8-39827372fa08	5	140615827	140615827	C	T	SNP	PCDHB18	ENST00000526308	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.992	-	-	-	no_errors	PCDHB18	HGNC	ENSG00000146001	30	0	0.00	22	13	36.11	-	-	-
PCGF5	0	genome.wustl.edu	37	10	93021117	93021117	+	Missense_Mutation	SNP	G	G	A			TCGA-E2-A15R-01A-11D-A10Y-09	TCGA-E2-A15R-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11799240-0275-48fe-84ef-85e188839bbe	463d72c3-0e93-4d3e-b1c8-39827372fa08	10	93021117	93021117	G	A	SNP	PCGF5	ENST00000336126	human	ensembl	69_37n	+1	known	missense	c.509	p.R170H	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	PCGF5	HGNC	ENSG00000180628	17	0	0.00	18	12	40.00	-	-	-
PHF15	0	genome.wustl.edu	37	5	133902109	133902109	+	Missense_Mutation	SNP	G	G	A			TCGA-E2-A15R-01A-11D-A10Y-09	TCGA-E2-A15R-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11799240-0275-48fe-84ef-85e188839bbe	463d72c3-0e93-4d3e-b1c8-39827372fa08	5	133902109	133902109	G	A	SNP	PHF15	ENST00000448712	human	ensembl	69_37n	+1	known	missense	c.1321	p.D441N	1.000	NULL	pfam_Enhancer_polycomb-like_N,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	PHF15	HGNC	ENSG00000043143	35	0	0.00	24	17	41.46	-	-	-
POU5F2	0	genome.wustl.edu	37	5	93077199	93077199	+	Missense_Mutation	SNP	G	G	A			TCGA-E2-A15R-01A-11D-A10Y-09	TCGA-E2-A15R-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11799240-0275-48fe-84ef-85e188839bbe	463d72c3-0e93-4d3e-b1c8-39827372fa08	5	93077199	93077199	G	A	SNP	POU5F2	ENST00000510627	human	ensembl	69_37n	-1	known	missense	c.71	p.P24L	0.001	NULL	pfam_POU_specific,pfam_Homeodomain,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_POU_specific,smart_Homeodomain,pfscan_Homeodomain,pfscan_POU_specific,prints_POU	-	no_errors	POU5F2	HGNC	ENSG00000248483	26	0	0.00	12	13	52.00	-	-	-
PRRC2B	0	genome.wustl.edu	37	9	134354682	134354682	+	Missense_Mutation	SNP	G	G	A			TCGA-E2-A15R-01A-11D-A10Y-09	TCGA-E2-A15R-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11799240-0275-48fe-84ef-85e188839bbe	463d72c3-0e93-4d3e-b1c8-39827372fa08	9	134354682	134354682	G	A	SNP	PRRC2B	ENST00000357304	human	ensembl	69_37n	+1	known	missense	c.4802	p.R1601Q	1.000	NULL	pfam_BAT2_N	-	no_errors	PRRC2B	HGNC	ENSG00000130723	192	0	0.00	184	32	14.81	-	-	-
RGS12	0	genome.wustl.edu	37	4	3441258	3441258	+	Silent	SNP	C	C	G			TCGA-E2-A15R-01A-11D-A10Y-09	TCGA-E2-A15R-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11799240-0275-48fe-84ef-85e188839bbe	463d72c3-0e93-4d3e-b1c8-39827372fa08	4	3441258	3441258	C	G	SNP	RGS12	ENST00000344733	human	ensembl	69_37n	+1	known	silent	c.4191	p.P1397	0.000	NULL	pfam_Raf-like_ras-bd,pfam_Regulat_G_prot_signal,pfam_PDZ,pfam_GoLoco_motif,superfamily_Regulat_G_prot_signal_superfam,superfamily_PDZ,smart_PDZ,smart_PTyr_interaction_dom,smart_Regulat_G_prot_signal,smart_Raf-like_ras-bd,smart_GoLoco_motif,pfscan_GoLoco_motif,pfscan_PDZ,pfscan_PTyr_interaction_dom,pfscan_Raf-like_ras-bd,pfscan_Regulat_G_prot_signal,prints_Regulat_G_prot_signal	-	no_errors	RGS12	HGNC	ENSG00000159788	42	0	0.00	35	30	46.15	-	-	-
RNF207	0	genome.wustl.edu	37	1	6271954	6271954	+	Missense_Mutation	SNP	G	G	A			TCGA-E2-A15R-01A-11D-A10Y-09	TCGA-E2-A15R-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11799240-0275-48fe-84ef-85e188839bbe	463d72c3-0e93-4d3e-b1c8-39827372fa08	1	6271954	6271954	G	A	SNP	RNF207	ENST00000377948	human	ensembl	69_37n	+1	known	missense	c.289	p.A97T	0.306	NULL	NULL	-	no_errors	RNF207	HGNC	ENSG00000158286	15	0	0.00	4	11	73.33	-	-	-
SCNN1D	0	genome.wustl.edu	37	1	1222976	1222976	+	Missense_Mutation	SNP	G	G	A			TCGA-E2-A15R-01A-11D-A10Y-09	TCGA-E2-A15R-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11799240-0275-48fe-84ef-85e188839bbe	463d72c3-0e93-4d3e-b1c8-39827372fa08	1	1222976	1222976	G	A	SNP	SCNN1D	ENST00000379116	human	ensembl	69_37n	+1	known	missense	c.1399	p.G467R	0.053	pfam_Na+channel_ASC,prints_Na+channel_ASC,tigrfam_EnaC	pfam_Na+channel_ASC,superfamily_FH2_actin-bd,prints_Na+channel_ASC,tigrfam_EnaC	-	no_errors	SCNN1D	HGNC	ENSG00000162572	54	0	0.00	68	36	34.62	-	-	-
SLC4A1	0	genome.wustl.edu	37	17	42330650	42330650	+	Missense_Mutation	SNP	G	G	T			TCGA-E2-A15R-01A-11D-A10Y-09	TCGA-E2-A15R-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11799240-0275-48fe-84ef-85e188839bbe	463d72c3-0e93-4d3e-b1c8-39827372fa08	17	42330650	42330650	G	T	SNP	SLC4A1	ENST00000262418	human	ensembl	69_37n	-1	known	missense	c.2147	p.A716D	0.014	pfam_HCO3_transpt_C,tigrfam_HCO3_transpt_euk	pfam_HCO3_transpt_C,pfam_HCO3_transpt_cyt,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,prints_Anion_exchange,prints_Anion_exchange_1,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A1	HGNC	ENSG00000004939	75	0	0.00	47	67	58.26	-	-	-
TBC1D3	0	genome.wustl.edu	37	17	36340138	36340138	+	Silent	SNP	A	A	G			TCGA-E2-A15R-01A-11D-A10Y-09	TCGA-E2-A15R-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11799240-0275-48fe-84ef-85e188839bbe	463d72c3-0e93-4d3e-b1c8-39827372fa08	17	36340138	36340138	A	G	SNP	TBC1D3	ENST00000354664	human	ensembl	69_37n	-1	known	silent	c.889	p.L297	0.353	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D3	HGNC	ENSG00000197681	14	0	0.00	2	3	60.00	-	-	-
TEX35	0	genome.wustl.edu	37	1	178490396	178490396	+	Missense_Mutation	SNP	C	C	T			TCGA-E2-A15R-01A-11D-A10Y-09	TCGA-E2-A15R-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11799240-0275-48fe-84ef-85e188839bbe	463d72c3-0e93-4d3e-b1c8-39827372fa08	1	178490396	178490396	C	T	SNP	TEX35	ENST00000319416	human	ensembl	69_37n	+1	known	missense	c.583	p.R195W	0.962	NULL	NULL	-	no_errors	TEX35	HGNC	ENSG00000240021	421	0	0.00	474	195	29.10	-	-	-
TRIM58	0	genome.wustl.edu	37	1	248039412	248039412	+	Missense_Mutation	SNP	G	G	A			TCGA-E2-A15R-01A-11D-A10Y-09	TCGA-E2-A15R-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11799240-0275-48fe-84ef-85e188839bbe	463d72c3-0e93-4d3e-b1c8-39827372fa08	1	248039412	248039412	G	A	SNP	TRIM58	ENST00000366481	human	ensembl	69_37n	+1	known	missense	c.1082	p.G361E	0.982	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,prints_Butyrophylin	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl,smart_Znf_RING,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM58	HGNC	ENSG00000162722	300	0	0.00	40	133	76.88	-	-	-
USP36	0	genome.wustl.edu	37	17	76798464	76798464	+	Silent	SNP	G	G	T			TCGA-E2-A15R-01A-11D-A10Y-09	TCGA-E2-A15R-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11799240-0275-48fe-84ef-85e188839bbe	463d72c3-0e93-4d3e-b1c8-39827372fa08	17	76798464	76798464	G	T	SNP	USP36	ENST00000312010	human	ensembl	69_37n	-1	known	silent	c.2964	p.V988	0.115	NULL	pfam_Peptidase_C19,pfscan_Peptidase_C19	-	no_errors	USP36	HGNC	ENSG00000055483	103	0	0.00	73	48	39.67	-	-	-
WDR4	0	genome.wustl.edu	37	21	44279796	44279796	+	Silent	SNP	G	G	A			TCGA-E2-A15R-01A-11D-A10Y-09	TCGA-E2-A15R-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11799240-0275-48fe-84ef-85e188839bbe	463d72c3-0e93-4d3e-b1c8-39827372fa08	21	44279796	44279796	G	A	SNP	WDR4	ENST00000330317	human	ensembl	69_37n	-1	known	silent	c.603	p.P201	0.036	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR4	HGNC	ENSG00000160193	73	0	0.00	57	31	35.23	-	-	-
WNT7A	0	genome.wustl.edu	37	3	13860569	13860569	+	Missense_Mutation	SNP	A	A	T			TCGA-E2-A15R-01A-11D-A10Y-09	TCGA-E2-A15R-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11799240-0275-48fe-84ef-85e188839bbe	463d72c3-0e93-4d3e-b1c8-39827372fa08	3	13860569	13860569	A	T	SNP	WNT7A	ENST00000285018	human	ensembl	69_37n	-1	known	missense	c.922	p.C308S	1.000	pfam_Wnt,smart_Wnt	pfam_Wnt,smart_Wnt,prints_Wnt,prints_Wnt7	-	no_errors	WNT7A	HGNC	ENSG00000154764	101	0	0.00	65	33	33.67	-	-	-
ZIC3	0	genome.wustl.edu	37	X	136649808	136649808	+	Silent	SNP	C	C	A			TCGA-E2-A15R-01A-11D-A10Y-09	TCGA-E2-A15R-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11799240-0275-48fe-84ef-85e188839bbe	463d72c3-0e93-4d3e-b1c8-39827372fa08	X	136649808	136649808	C	A	SNP	ZIC3	ENST00000287538	human	ensembl	69_37n	+1	known	silent	c.958	p.R320	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZIC3	HGNC	ENSG00000156925	54	0	0.00	29	21	42.00	-	-	-
ZNF699	0	genome.wustl.edu	37	19	9407034	9407034	+	Frame_Shift_Del	DEL	T	T	-			TCGA-E2-A15R-01A-11D-A10Y-09	TCGA-E2-A15R-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	11799240-0275-48fe-84ef-85e188839bbe	463d72c3-0e93-4d3e-b1c8-39827372fa08	19	9407034	9407034	T	-	DEL	ZNF699	ENST00000308650	human	ensembl	69_37n	-1	known	frame_shift_del	c.1046	p.H349fs	0.003	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF699	HGNC	ENSG00000196110	140	0	0.00	53	31	35.23	-	-	-
