Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
ADAMTSL1	0	genome.wustl.edu	37	9	18829842	18829843	+	Frame_Shift_Ins	INS	-	-	C			TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	9	18829842	18829843	-	C	INS	ADAMTSL1	ENST00000388710	human	ensembl	69_37n	+1	known	frame_shift_ins	c.219_220	p.Q75fs	0.998:1.000	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	ADAMTSL1	HGNC	ENSG00000178031	89	0	0.00	48	8	14.29	-	-	-
ALG12	0	genome.wustl.edu	37	22	50297990	50297991	+	Frame_Shift_Ins	INS	-	-	G			TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	22	50297990	50297991	-	G	INS	ALG12	ENST00000330817	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1157_1156	p.Q386fs	0.074:0.002	NULL	pfam_GPI_mannosylTrfase	-	no_errors	ALG12	HGNC	ENSG00000182858	20	0	0.00	25	7	21.88	-	-	-
ANAPC4	0	genome.wustl.edu	37	4	25395932	25395932	+	Nonsense_Mutation	SNP	G	G	T			TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	4	25395932	25395932	G	T	SNP	ANAPC4	ENST00000510092	human	ensembl	69_37n	+1	known	nonsense	c.877	p.E293*	1.000	pirsf_APC4_metazoa	superfamily_WD40_repeat_dom,pirsf_APC4_metazoa	-	no_errors	ANAPC4	HGNC	ENSG00000053900	65	0	0.00	42	30	41.67	-	-	-
ART5	0	genome.wustl.edu	37	11	3660979	3660980	+	Frame_Shift_Ins	INS	-	-	G			TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	11	3660979	3660980	-	G	INS	ART5	ENST00000359918	human	ensembl	69_37n	-1	known	frame_shift_ins	c.680_679	p.H227fs	0.986:0.988	pfam_ART,prints_ART	pfam_ART,prints_ART	-	no_errors	ART5	HGNC	ENSG00000167311	37	0	0.00	9	2	18.18	-	-	-
ASIC4	0	genome.wustl.edu	37	2	220402687	220402688	+	Frame_Shift_Ins	INS	-	-	G			TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	2	220402687	220402688	-	G	INS	ASIC4	ENST00000347842	human	ensembl	69_37n	+1	known	frame_shift_ins	c.1863_1864	p.V623fs	0.959:1.000	NULL	pfam_Na+channel_ASC,prints_Na+channel_ASC	-	no_errors	ASIC4	HGNC	ENSG00000072182	52	0	0.00	46	6	11.54	-	-	-
ATG9B	0	genome.wustl.edu	37	7	150721217	150721218	+	RNA	INS	-	-	G			TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	7	150721217	150721218	-	G	INS	ATG9B	ENST00000377974	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.001:0.003	-	-	-	no_errors	ATG9B	HGNC	ENSG00000181652	15	0	0.00	8	2	20.00	-	-	-
ATP10D	0	genome.wustl.edu	37	4	47559697	47559698	+	Frame_Shift_Ins	INS	-	-	G			TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	4	47559697	47559698	-	G	INS	ATP10D	ENST00000273859	human	ensembl	69_37n	+1	known	frame_shift_ins	c.1841_1842	p.L617fs	0.449:0.439	superfamily_HAD-like_dom	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP10D	HGNC	ENSG00000145246	24	0	0.00	6	3	33.33	-	-	-
ATP7B	0	genome.wustl.edu	37	13	52511651	52511651	+	Silent	SNP	C	C	T			TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	13	52511651	52511651	C	T	SNP	ATP7B	ENST00000242839	human	ensembl	69_37n	-1	known	silent	c.3864	p.T1288	0.161	pfam_HAD-SF_hydro-like_3,superfamily_HAD-like_dom,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_heavy-metal,tigrfam_ATPase_P-typ_ion-transptr	pfam_HeavyMe-assoc_HMA,pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_Dehalogen-like_hydro,pfam_HAD-SF_hydro-like_3,superfamily_HAD-like_dom,superfamily_HeavyMe-assoc_HMA,pfscan_HeavyMe-assoc_HMA,prints_ATPase_P-typ_cat/Cu-transptr,prints_ATPase_P-typ_ion-transptr,prints_ATPase_P-typ_H-transp,tigrfam_ATPase_P-typ_heavy-metal,tigrfam_ATPase_P-typ_ion-transptr,tigrfam_HMA_Cu_ion-bd	-	no_errors	ATP7B	HGNC	ENSG00000123191	57	0	0.00	32	6	15.79	-	-	-
AXL	0	genome.wustl.edu	37	19	41743932	41743933	+	Frame_Shift_Ins	INS	-	-	C			TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	19	41743932	41743933	-	C	INS	AXL	ENST00000301178	human	ensembl	69_37n	+1	known	frame_shift_ins	c.867_868	p.H291fs	0.982:1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Ig_V-set,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	AXL	HGNC	ENSG00000167601	60	0	0.00	122	17	12.23	-	-	-
BARHL2	0	genome.wustl.edu	37	1	91182376	91182377	+	Frame_Shift_Ins	INS	-	-	G			TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	1	91182376	91182377	-	G	INS	BARHL2	ENST00000370445	human	ensembl	69_37n	-1	known	frame_shift_ins	c.377_376	p.Q126fs	0.999:1.000	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_Homeobox_metazoa	-	no_errors	BARHL2	HGNC	ENSG00000143032	13	0	0.00	7	4	36.36	-	-	-
BAX	0	genome.wustl.edu	37	19	49458970	49458971	+	Frame_Shift_Ins	INS	-	-	G			TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	19	49458970	49458971	-	G	INS	BAX	ENST00000293288	human	ensembl	69_37n	+1	known	frame_shift_ins	c.113_114	p.E41fs	0.585:0.588	NULL	pfam_Bcl2_BH,smart_Bcl2_BH,pfscan_Bcl2-like_apoptosis,prints_Bcl2_BH	-	no_errors	BAX	HGNC	ENSG00000087088	46	0	0.00	9	4	30.77	-	-	-
BMP1	0	genome.wustl.edu	37	8	22054259	22054260	+	Frame_Shift_Ins	INS	-	-	C			TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	8	22054259	22054260	-	C	INS	BMP1	ENST00000306385	human	ensembl	69_37n	+1	known	frame_shift_ins	c.1832_1833	p.N614fs	1.000:1.000	pfam_CUB,superfamily_CUB,smart_CUB,pirsf_BMP_1/tolloid-like,pfscan_CUB	pfam_CUB,pfam_Peptidase_M12A,pfam_EGF-like_Ca-bd,superfamily_CUB,smart_Peptidase_Metallo,smart_CUB,smart_EGF-like_Ca-bd,smart_EGF-like,pirsf_BMP_1/tolloid-like,prints_Peptidase_M12A,pfscan_CUB,pfscan_EG-like_dom	-	no_errors	BMP1	HGNC	ENSG00000168487	47	0	0.00	23	4	14.81	-	-	-
BPIFB4	0	genome.wustl.edu	37	20	31671213	31671214	+	Frame_Shift_Ins	INS	-	-	C			TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	20	31671213	31671214	-	C	INS	BPIFB4	ENST00000375483	human	ensembl	69_37n	+1	known	frame_shift_ins	c.210_211	p.V73fs	0.020:0.030	NULL	pfam_Lipid-bd_serum_glycop_N,pfam_Lipid-bd_serum_glycop_C,superfamily_Bactericidal_perm-incr_a/b_dom,smart_Lipid-bd_serum_glycop_N,smart_Lipid-bd_serum_glycop_C	-	no_errors	BPIFB4	HGNC	ENSG00000186191	23	0	0.00	23	10	30.30	-	-	-
BRD8	0	genome.wustl.edu	37	5	137505020	137505021	+	Frame_Shift_Ins	INS	-	-	G			TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	5	137505020	137505021	-	G	INS	BRD8	ENST00000254900	human	ensembl	69_37n	-1	known	frame_shift_ins	c.533_532	p.R178fs	1.000:1.000	NULL	pfam_Bromodomain,superfamily_Bromodomain,superfamily_Peptidase_M20_dimer,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BRD8	HGNC	ENSG00000112983	55	0	0.00	38	5	11.63	-	-	-
C19orf69	0	genome.wustl.edu	37	19	41949131	41949132	+	Frame_Shift_Ins	INS	-	-	C			TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	19	41949131	41949132	-	C	INS	C19orf69	ENST00000378187	human	ensembl	69_37n	+1	known	frame_shift_ins	c.57_58	p.Q21fs	0.996:0.991	NULL	NULL	-	no_errors	C19orf69	HGNC	ENSG00000204978	52	0	0.00	23	3	11.54	-	-	-
C2CD4D	0	genome.wustl.edu	37	1	151810572	151810573	+	Frame_Shift_Ins	INS	-	-	G			TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	1	151810572	151810573	-	G	INS	C2CD4D	ENST00000454109	human	ensembl	69_37n	-1	known	frame_shift_ins	c.894_893	p.D299fs	0.000:0.001	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	-	no_errors	C2CD4D	HGNC	ENSG00000225556	27	0	0.00	7	2	22.22	-	-	-
C9orf91	0	genome.wustl.edu	37	9	117379520	117379521	+	Frame_Shift_Ins	INS	-	-	C			TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	9	117379520	117379521	-	C	INS	C9orf91	ENST00000374049	human	ensembl	69_37n	+1	known	frame_shift_ins	c.45_46	p.S17fs	0.659:0.671	NULL	NULL	-	no_errors	C9orf91	HGNC	ENSG00000157693	30	0	0.00	13	2	13.33	-	-	-
CAPN1	0	genome.wustl.edu	37	11	64956194	64956195	+	Frame_Shift_Ins	INS	-	-	G			TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	11	64956194	64956195	-	G	INS	CAPN1	ENST00000279247	human	ensembl	69_37n	+1	known	frame_shift_ins	c.1142_1143	p.C384fs	0.999:0.677	pfam_Calpain_domain_III,superfamily_Calpain_domain_III,smart_Calpain_III,prints_Calpain_cysteine_protease	pfam_Peptidase_C2_calpain_cat,pfam_Calpain_domain_III,superfamily_Calpain_domain_III,smart_Peptidase_C2_calpain_cat,smart_Calpain_III,pfscan_EF_HAND_2,pfscan_Peptidase_C2_calpain_cat,prints_Calpain_cysteine_protease	-	no_errors	CAPN1	HGNC	ENSG00000014216	25	0	0.00	24	3	11.11	-	-	-
CCDC74A	0	genome.wustl.edu	37	2	132287109	132287110	+	Frame_Shift_Ins	INS	-	-	G			TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	2	132287109	132287110	-	G	INS	CCDC74A	ENST00000434330	human	ensembl	69_37n	+1	putative	frame_shift_ins	c.125_126	p.Q45fs	0.000:0.000	NULL	NULL	-	no_stop_codon:bad_bp_length_for_coding_region	CCDC74A	HGNC	ENSG00000163040	46	0	0.00	10	2	16.67	-	-	-
CCT8L2	0	genome.wustl.edu	37	22	17073281	17073281	+	Frame_Shift_Del	DEL	G	G	-			TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	22	17073281	17073281	G	-	DEL	CCT8L2	ENST00000359963	human	ensembl	69_37n	-1	known	frame_shift_del	c.160	p.H54fs	0.849	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,prints_Chaperone_TCP-1	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,prints_Chaperone_TCP-1	-	no_errors	CCT8L2	HGNC	ENSG00000198445	51	0	0.00	17	2	10.53	-	-	-
CDHR2	0	genome.wustl.edu	37	5	176003133	176003134	+	Frame_Shift_Ins	INS	-	-	C			TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	5	176003133	176003134	-	C	INS	CDHR2	ENST00000261944	human	ensembl	69_37n	+1	known	frame_shift_ins	c.1141_1142	p.R383fs	0.404:0.405	superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDHR2	HGNC	ENSG00000074276	38	0	0.00	20	4	16.67	-	-	-
CECR2	0	genome.wustl.edu	37	22	18022285	18022286	+	Frame_Shift_Ins	INS	-	-	C			TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	22	18022285	18022286	-	C	INS	CECR2	ENST00000400573	human	ensembl	69_37n	+1	novel	frame_shift_ins	c.2387_2388	p.N799fs	0.580:0.581	NULL	pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	CECR2	HGNC	ENSG00000099954	30	0	0.00	21	4	16.00	-	-	-
CELSR3	0	genome.wustl.edu	37	3	48689914	48689915	+	Frame_Shift_Ins	INS	-	-	G			TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	3	48689914	48689915	-	G	INS	CELSR3	ENST00000544264	human	ensembl	69_37n	-1	known	frame_shift_ins	c.5707_5706	p.G1902fs	0.002:0.001	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,pfscan_Laminin_G	pfam_Cadherin,pfam_GPCR_2_secretin-like,pfam_Laminin_G,pfam_DUF3497,pfam_EGF-like_dom,pfam_EGF_laminin,superfamily_ConA-like_lec_gl,superfamily_Cadherin-like,smart_Cadherin,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Laminin_G,smart_EGF_laminin,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_GPS_dom,pfscan_Laminin_G,pfscan_Cadherin,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_Cadherin,prints_GPCR_2_secretin-like	-	no_errors	CELSR3	HGNC	ENSG00000008300	34	0	0.00	9	3	25.00	-	-	-
CHD4	0	genome.wustl.edu	37	12	6711207	6711209	+	In_Frame_Del	DEL	CTT	CTT	-			TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	CTT	CTT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	12	6711207	6711209	CTT	-	DEL	CHD4	ENST00000309577	human	ensembl	69_37n	-1	known	in_frame_del	c.357_355	p.K119in_frame_del	0.999:1.000:1.000	NULL	pfam_CHD_C2,pfam_DUF1086,pfam_SNF2_N,pfam_CHD_N,pfam_DUF1087,pfam_Znf_PHD-finger,pfam_Chromo_domain,pfam_Helicase_C,pfam_HDA_complex_subunit-2/3,pfam_Helicase/UvrB_dom,superfamily_Chromodomain-like,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,superfamily_Homeodomain-like,smart_Znf_PHD,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Znf_PHD-finger,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD4	HGNC	ENSG00000111642	22	0	0.00	13	4	23.53	-	-	-
CLPP	0	genome.wustl.edu	37	19	6361606	6361607	+	Frame_Shift_Ins	INS	-	-	G			TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	19	6361606	6361607	-	G	INS	CLPP	ENST00000245816	human	ensembl	69_37n	+1	known	frame_shift_ins	c.21_22	p.A9fs	0.000:0.003	NULL	pfam_ClpP/TepA,prints_ClpP	-	no_errors	CLPP	HGNC	ENSG00000125656	18	0	0.00	16	2	11.11	-	-	-
CLSTN1	0	genome.wustl.edu	37	1	9804665	9804665	+	Frame_Shift_Del	DEL	G	G	-			TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	1	9804665	9804665	G	-	DEL	CLSTN1	ENST00000377298	human	ensembl	69_37n	-1	known	frame_shift_del	c.1022	p.P341fs	1.000	superfamily_ConA-like_lec_gl	pfam_Cadherin,superfamily_ConA-like_lec_gl,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	CLSTN1	HGNC	ENSG00000171603	33	0	0.00	11	2	15.38	-	-	-
CNKSR1	0	genome.wustl.edu	37	1	26514777	26514778	+	Frame_Shift_Ins	INS	-	-	C			TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	1	26514777	26514778	-	C	INS	CNKSR1	ENST00000374253	human	ensembl	69_37n	+1	known	frame_shift_ins	c.1528_1529	p.P513fs	0.000:0.000	NULL	pfam_CRIC_domain_Chordata,pfam_Pleckstrin_homology,pfam_SAM_type1,superfamily_SAM/pointed,superfamily_PDZ,smart_SAM,smart_Pleckstrin_homology,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_SAM	-	no_errors	CNKSR1	HGNC	ENSG00000142675	90	0	0.00	36	5	12.20	-	-	-
CNOT3	0	genome.wustl.edu	37	19	54649666	54649667	+	Frame_Shift_Ins	INS	-	-	C			TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	19	54649666	54649667	-	C	INS	CNOT3	ENST00000221232	human	ensembl	69_37n	+1	known	frame_shift_ins	c.724_725	p.P244fs	1.000:1.000	pirsf_CCR4-NOT_su3/5	pfam_Not_N,pfam_NOT,pirsf_CCR4-NOT_su3/5	-	no_errors	CNOT3	HGNC	ENSG00000088038	69	0	0.00	121	25	17.12	-	-	-
COL4A4	0	genome.wustl.edu	37	2	227896715	227896715	+	Missense_Mutation	SNP	G	G	A			TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	2	227896715	227896715	G	A	SNP	COL4A4	ENST00000396625	human	ensembl	69_37n	-1	known	missense	c.3763	p.P1255S	0.892	NULL	pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	-	no_errors	COL4A4	HGNC	ENSG00000081052	36	0	0.00	17	10	37.04	-	-	-
COL5A1	0	genome.wustl.edu	37	9	137642389	137642390	+	Frame_Shift_Ins	INS	-	-	C			TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	9	137642389	137642390	-	C	INS	COL5A1	ENST00000371817	human	ensembl	69_37n	+1	known	frame_shift_ins	c.1496_1497	p.G502fs	1.000:1.000	pfam_Collagen	pfam_Collagen,pfam_Fib_collagen_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl,superfamily_Fibrinogen_a/b/g_C,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL5A1	HGNC	ENSG00000130635	53	0	0.00	4	2	33.33	-	-	-
CRAT	0	genome.wustl.edu	37	9	131864813	131864814	+	Frame_Shift_Ins	INS	-	-	C			TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	9	131864813	131864814	-	C	INS	CRAT	ENST00000318080	human	ensembl	69_37n	-1	known	frame_shift_ins	c.496_495	p.K165fs	0.909:0.127	pfam_Carn_acyl_trans	pfam_Carn_acyl_trans	-	no_errors	CRAT	HGNC	ENSG00000095321	64	0	0.00	27	3	10.00	-	-	-
CRTC1	0	genome.wustl.edu	37	19	18879553	18879554	+	Frame_Shift_Ins	INS	-	-	C			TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	19	18879553	18879554	-	C	INS	CRTC1	ENST00000338797	human	ensembl	69_37n	+1	known	frame_shift_ins	c.1318_1319	p.E443fs	1.000:1.000	NULL	NULL	-	no_errors	CRTC1	HGNC	ENSG00000105662	19	0	0.00	7	2	22.22	-	-	-
CYB5R4	0	genome.wustl.edu	37	6	84569561	84569562	+	Frame_Shift_Ins	INS	-	-	G			TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	6	84569561	84569562	-	G	INS	CYB5R4	ENST00000369681	human	ensembl	69_37n	+1	known	frame_shift_ins	c.60_61	p.R22fs	0.753:0.969	NULL	pfam_Cyt_B5,pfam_OxRdtase_FAD-bd_dom,pfam_OxRdtase_FAD/NAD-bd,pfam_CS_domain,superfamily_Cyt_B5,superfamily_Riboflavin_synthase-like_b-brl,superfamily_HSP20-like_chaperone,pfscan_CS-like_domain,pfscan_Cyt_B5,prints_NADH-Cyt_B5_reductase,prints_Cyt_B5	-	no_errors	CYB5R4	HGNC	ENSG00000065615	34	0	0.00	10	2	16.67	-	-	-
DHX9	0	genome.wustl.edu	37	1	182811768	182811768	+	Missense_Mutation	SNP	A	A	G			TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	1	182811768	182811768	A	G	SNP	DHX9	ENST00000367549	human	ensembl	69_37n	+1	known	missense	c.67	p.I23V	1.000	pfam_Ds-RNA-bd,smart_Ds-RNA-bd,pfscan_Ds-RNA-bd	pfam_Ds-RNA-bd,pfam_Helicase-assoc_dom,pfam_Helicase_C,pfam_DUF1605,pfam_DNA/RNA_helicase_DEAD/DEAH_N,smart_Ds-RNA-bd,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Ds-RNA-bd	-	no_errors	DHX9	HGNC	ENSG00000135829	99	0	0.00	93	155	62.50	-	-	-
DLX3	0	genome.wustl.edu	37	17	48068892	48068892	+	Frame_Shift_Del	DEL	C	C	-			TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	17	48068892	48068892	C	-	DEL	DLX3	ENST00000434704	human	ensembl	69_37n	-1	known	frame_shift_del	c.853	p.A285fs	1.000	NULL	pfam_Distal-less_N,pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_HTH_motif,prints_Homeobox_metazoa	-	no_errors	DLX3	HGNC	ENSG00000064195	28	0	0.00	15	2	11.76	-	-	-
DNM2	0	genome.wustl.edu	37	19	10940881	10940882	+	Frame_Shift_Ins	INS	-	-	C			TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	19	10940881	10940882	-	C	INS	DNM2	ENST00000314646	human	ensembl	69_37n	+1	known	frame_shift_ins	c.2370_2371	p.L792fs	0.894:1.000	NULL	pfam_Dynamin_central,pfam_Dynamin_GTPase,pfam_GED,pfam_Pleckstrin_homology,smart_Dynamin_GTPase,smart_Pleckstrin_homology,smart_GED,pfscan_Pleckstrin_homology,prints_Dynamin	-	no_errors	DNM2	HGNC	ENSG00000079805	40	0	0.00	25	3	10.71	-	-	-
EID2B	0	genome.wustl.edu	37	19	40023339	40023340	+	Frame_Shift_Ins	INS	-	-	C			TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	19	40023339	40023340	-	C	INS	EID2B	ENST00000326282	human	ensembl	69_37n	-1	known	frame_shift_ins	c.104_103	p.A35fs	0.002:0.003	NULL	NULL	-	no_errors	EID2B	HGNC	ENSG00000176401	9	0	0.00	4	2	33.33	-	-	-
EMID2	0	genome.wustl.edu	37	7	101187315	101187316	+	Frame_Shift_Ins	INS	-	-	C			TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	7	101187315	101187316	-	C	INS	EMID2	ENST00000313669	human	ensembl	69_37n	+1	known	frame_shift_ins	c.641_642	p.G217fs	0.985:0.708	pfam_Collagen	pfam_EMI_domain,pfam_Collagen,pfscan_EMI_domain	-	no_errors	EMID2	HGNC	ENSG00000160963	26	0	0.00	5	2	28.57	-	-	-
ERCC6	0	genome.wustl.edu	37	10	50690757	50690758	+	Frame_Shift_Ins	INS	-	-	C			TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	10	50690757	50690758	-	C	INS	ERCC6	ENST00000355832	human	ensembl	69_37n	-1	known	frame_shift_ins	c.2145_2144	p.Y716fs	0.736:1.000	pfam_SNF2_N	pfam_SNF2_N,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ERCC6	HGNC	ENSG00000225830	46	0	0.00	14	2	12.50	-	-	-
FAM178B	0	genome.wustl.edu	37	2	97636500	97636501	+	Frame_Shift_Ins	INS	-	-	C			TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	2	97636500	97636501	-	C	INS	FAM178B	ENST00000417561	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1023_1022	p.S342fs	0.024:0.001	NULL	NULL	-	no_errors	FAM178B	HGNC	ENSG00000168754	50	0	0.00	38	5	11.63	-	-	-
FAM40A	0	genome.wustl.edu	37	1	110585774	110585775	+	Frame_Shift_Ins	INS	-	-	C			TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	1	110585774	110585775	-	C	INS	FAM40A	ENST00000369795	human	ensembl	69_37n	+1	known	frame_shift_ins	c.950_951	p.L320fs	0.999:0.006	pfam_N1221	pfam_DUF3402,pfam_N1221	-	no_errors	FAM40A	HGNC	ENSG00000143093	40	0	0.00	16	3	15.79	-	-	-
FAM92B	0	genome.wustl.edu	37	16	85135924	85135924	+	Frame_Shift_Del	DEL	A	A	-			TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	16	85135924	85135924	A	-	DEL	FAM92B	ENST00000539556	human	ensembl	69_37n	-1	known	frame_shift_del	c.547	p.C183fs	0.000	pfam_FAM92	pfam_FAM92	-	no_errors	FAM92B	HGNC	ENSG00000153789	47	0	0.00	12	2	14.29	-	-	-
FAT2	0	genome.wustl.edu	37	5	150905451	150905452	+	Frame_Shift_Ins	INS	-	-	G			TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	5	150905451	150905452	-	G	INS	FAT2	ENST00000261800	human	ensembl	69_37n	-1	known	frame_shift_ins	c.10384_10383	p.Y3461fs	1.000:0.841	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl,smart_Cadherin,smart_Laminin_G,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT2	HGNC	ENSG00000086570	44	0	0.00	24	4	14.29	-	-	-
FBXW9	0	genome.wustl.edu	37	19	12800973	12800974	+	Frame_Shift_Ins	INS	-	-	C			TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	19	12800973	12800974	-	C	INS	FBXW9	ENST00000380339	human	ensembl	69_37n	-1	known	frame_shift_ins	c.925_924	p.P308fs	0.001:0.002	superfamily_WD40_repeat_dom	pfam_WD40_repeat,pfam_F-box_dom_cyclin-like,superfamily_WD40_repeat_dom,superfamily_F-box_dom_cyclin-like,smart_F-box_dom_cyclin-like,smart_WD40_repeat,pfscan_F-box_dom_cyclin-like,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	FBXW9	HGNC	ENSG00000132004	35	0	0.00	48	9	15.79	-	-	-
FLJ43860	0	genome.wustl.edu	37	8	142506589	142506590	+	Frame_Shift_Ins	INS	-	-	G			TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	8	142506589	142506590	-	G	INS	FLJ43860	ENST00000430863	human	ensembl	69_37n	-1	known	frame_shift_ins	c.93_92	p.V32fs	0.000:0.000	NULL	NULL	-	pseudogene	AC100803.1	Clone_based_vega_gene	ENSG00000226807	105	0	0.00	63	8	11.27	-	-	-
FLT3LG	0	genome.wustl.edu	37	19	49982165	49982166	+	Frame_Shift_Ins	INS	-	-	C			TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	19	49982165	49982166	-	C	INS	FLT3LG	ENST00000204637	human	ensembl	69_37n	+1	known	frame_shift_ins	c.344_343	p.S118fs	1.000:1.000	pfam_Flt3_lig,superfamily_4_helix_cytokine-like_core	pfam_Flt3_lig,superfamily_4_helix_cytokine-like_core	-	no_errors	FLT3LG	HGNC	ENSG00000090554	36	0	0.00	16	4	20.00	-	-	-
FNDC4	0	genome.wustl.edu	37	2	27717516	27717517	+	Frame_Shift_Ins	INS	-	-	G			TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	2	27717516	27717517	-	G	INS	FNDC4	ENST00000264703	human	ensembl	69_37n	-1	known	frame_shift_ins	c.31_30	p.S10fs	0.989:0.915	NULL	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	FNDC4	HGNC	ENSG00000115226	18	0	0.00	8	3	27.27	-	-	-
FOXM1	0	genome.wustl.edu	37	12	2968087	2968088	+	Frame_Shift_Ins	INS	-	-	G			TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	12	2968087	2968088	-	G	INS	FOXM1	ENST00000342628	human	ensembl	69_37n	-1	known	frame_shift_ins	c.2123_2122	p.L708fs	1.000:1.000	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXM1	HGNC	ENSG00000111206	47	0	0.00	19	3	13.64	-	-	-
FOXN1	0	genome.wustl.edu	37	17	26862048	26862049	+	Frame_Shift_Ins	INS	-	-	C			TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	17	26862048	26862049	-	C	INS	FOXN1	ENST00000226247	human	ensembl	69_37n	+1	known	frame_shift_ins	c.1459_1460	p.Q489fs	1.000:1.000	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXN1	HGNC	ENSG00000109101	19	0	0.00	5	2	28.57	-	-	-
GALR2	0	genome.wustl.edu	37	17	74073099	74073099	+	Frame_Shift_Del	DEL	C	C	-			TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	17	74073099	74073099	C	-	DEL	GALR2	ENST00000329003	human	ensembl	69_37n	+1	known	frame_shift_del	c.751	p.H252fs	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_Galanin_rcpt,prints_Galnin_2_rcpt	-	no_errors	GALR2	HGNC	ENSG00000182687	12	0	0.00	12	2	14.29	-	-	-
GATA3	0	genome.wustl.edu	37	10	8111496	8111497	+	Frame_Shift_Ins	INS	-	-	GGAG			TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	10	8111496	8111497	-	GGAG	INS	GATA3	ENST00000379328	human	ensembl	69_37n	+1	known	frame_shift_ins	c.985_986	p.R331fs	1.000:1.000	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	GATA3	HGNC	ENSG00000107485	79	0	0.00	35	13	27.08	-	-	-
GLI3	0	genome.wustl.edu	37	7	42004243	42004244	+	Frame_Shift_Ins	INS	-	-	T			TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	7	42004243	42004244	-	T	INS	GLI3	ENST00000395925	human	ensembl	69_37n	-1	known	frame_shift_ins	c.4428_4427	p.N1476fs	1.000:0.993	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	GLI3	HGNC	ENSG00000106571	43	0	0.00	24	3	11.11	-	-	-
GLYR1	0	genome.wustl.edu	37	16	4862228	4862229	+	Frame_Shift_Ins	INS	-	-	C			TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	16	4862228	4862229	-	C	INS	GLYR1	ENST00000321919	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1141_1140	p.R380fs	0.990:0.170	pfam_6PGDH_NADP-bd	pfam_6PGDH_NADP-bd,pfam_PWWP,pfam_NADP_OxRdtase_F420,superfamily_6-PGluconate_DH_C-like,smart_PWWP,pfscan_PWWP	-	no_errors	GLYR1	HGNC	ENSG00000140632	52	0	0.00	35	11	23.91	-	-	-
GPC2	0	genome.wustl.edu	37	7	99771553	99771554	+	Frame_Shift_Ins	INS	-	-	C			TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	7	99771553	99771554	-	C	INS	GPC2	ENST00000292377	human	ensembl	69_37n	-1	known	frame_shift_ins	c.797_796	p.V266fs	0.001:0.000	pfam_Glypican	pfam_Glypican	-	no_errors	GPC2	HGNC	ENSG00000213420	20	0	0.00	17	2	10.53	-	-	-
GPR124	0	genome.wustl.edu	37	8	37697097	37697098	+	Frame_Shift_Ins	INS	-	-	G			TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	8	37697097	37697098	-	G	INS	GPR124	ENST00000412232	human	ensembl	69_37n	+1	known	frame_shift_ins	c.2468_2469	p.I826fs	0.995:0.064	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like	pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_GPCR_2_extracellular_dom,pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,pfscan_GPS_dom,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,pfscan_Ig-like	-	no_errors	GPR124	HGNC	ENSG00000020181	47	0	0.00	12	2	14.29	-	-	-
GPSM2	0	genome.wustl.edu	37	1	109466642	109466643	+	Frame_Shift_Ins	INS	-	-	C			TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	1	109466642	109466643	-	C	INS	GPSM2	ENST00000264126	human	ensembl	69_37n	+1	known	frame_shift_ins	c.1621_1622	p.N543fs	0.975:0.997	NULL	pfam_GoLoco_motif,pfam_TPR-1,pfam_TPR-4,smart_TPR_repeat,smart_GoLoco_motif,pfscan_GoLoco_motif,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	GPSM2	HGNC	ENSG00000121957	42	0	0.00	8	2	20.00	-	-	-
HDAC6	0	genome.wustl.edu	37	X	48681900	48681901	+	Frame_Shift_Ins	INS	-	-	C			TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	X	48681900	48681901	-	C	INS	HDAC6	ENST00000444343	human	ensembl	69_37n	+1	known	frame_shift_ins	c.3133_3134	p.T1048fs	0.328:0.014	NULL	pfam_His_deacetylse_dom,pfam_Znf_UBP,smart_Znf_UBP,pfscan_Znf_UBP,prints_His_deacetylse	-	no_errors	HDAC6	HGNC	ENSG00000094631	24	0	0.00	15	3	16.67	-	-	-
HECTD4	0	genome.wustl.edu	37	12	112600859	112600860	+	Frame_Shift_Ins	INS	-	-	G			TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	12	112600859	112600860	-	G	INS	HECTD4	ENST00000377560	human	ensembl	69_37n	-1	known	frame_shift_ins	c.12591_12590	p.D4198fs	0.555:1.000	pfam_HECT,superfamily_HECT,smart_HECT,pfscan_HECT	pfam_HECT,superfamily_HECT,superfamily_ConA-like_lec_gl,smart_HECT,pfscan_HECT	-	no_errors	HECTD4	HGNC	ENSG00000173064	27	0	0.00	17	4	19.05	-	-	-
HECW1	0	genome.wustl.edu	37	7	43483924	43483924	+	Frame_Shift_Del	DEL	C	C	-			TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	7	43483924	43483924	C	-	DEL	HECW1	ENST00000395891	human	ensembl	69_37n	+1	known	frame_shift_del	c.1153	p.P385fs	0.000	NULL	pfam_HECT,pfam_WW_Rsp5_WWP,pfam_C2_Ca-dep,superfamily_HECT,superfamily_WW_Rsp5_WWP,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_WW_Rsp5_WWP,smart_HECT,pfscan_HECT,pfscan_C2_membr_targeting,pfscan_WW_Rsp5_WWP	-	no_errors	HECW1	HGNC	ENSG00000002746	42	0	0.00	7	2	22.22	-	-	-
HERC1	0	genome.wustl.edu	37	15	63918305	63918306	+	Frame_Shift_Ins	INS	-	-	G			TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	15	63918305	63918306	-	G	INS	HERC1	ENST00000443617	human	ensembl	69_37n	-1	known	frame_shift_ins	c.13154_13153	p.Q4385fs	1.000:1.000	NULL	pfam_Reg_chr_condens,pfam_HECT,pfam_WD40_repeat,pfam_SPRY_rcpt,superfamily_Reg_csome_cond/b-lactamase_inh,superfamily_HECT,superfamily_WD40_repeat_dom,superfamily_ConA-like_lec_gl,superfamily_UBA-like,superfamily_ARM-type_fold,smart_SPla/RYanodine_receptor_subgr,smart_WD40_repeat,smart_HECT,pfscan_B30.2/SPRY,pfscan_HECT,pfscan_Reg_chr_condens,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Reg_chr_condens	-	no_errors	HERC1	HGNC	ENSG00000103657	48	0	0.00	25	4	13.79	-	-	-
HN1L	0	genome.wustl.edu	37	16	1735531	1735531	+	Missense_Mutation	SNP	A	A	G			TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	16	1735531	1735531	A	G	SNP	HN1L	ENST00000248098	human	ensembl	69_37n	+1	known	missense	c.136	p.N46D	0.995	NULL	NULL	-	no_errors	HN1L	HGNC	ENSG00000206053	61	0	0.00	18	58	76.32	-	-	-
HPS1	0	genome.wustl.edu	37	10	100189562	100189563	+	Frame_Shift_Ins	INS	-	-	C			TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	10	100189562	100189563	-	C	INS	HPS1	ENST00000325103	human	ensembl	69_37n	-1	known	frame_shift_ins	c.853_852	p.S284fs	0.033:0.007	NULL	NULL	-	no_errors	HPS1	HGNC	ENSG00000107521	27	0	0.00	7	2	22.22	-	-	-
IGFN1	0	genome.wustl.edu	37	1	201174401	201174402	+	Frame_Shift_Ins	INS	-	-	G			TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	1	201174401	201174402	-	G	INS	IGFN1	ENST00000335211	human	ensembl	69_37n	+1	known	frame_shift_ins	c.1108_1109	p.A372fs	0.884:0.684	smart_Ig_sub	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	IGFN1	HGNC	ENSG00000163395	36	0	0.00	8	2	20.00	-	-	-
IGSF9B	0	genome.wustl.edu	37	11	133815978	133815979	+	Frame_Shift_Ins	INS	-	-	G			TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	11	133815978	133815979	-	G	INS	IGSF9B	ENST00000321016	human	ensembl	69_37n	-1	known	frame_shift_ins	c.240_239	p.H81fs	0.087:1.000	pfam_Ig_I-set,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	IGSF9B	HGNC	ENSG00000080854	61	0	0.00	18	4	18.18	-	-	-
ILF3	0	genome.wustl.edu	37	19	10794365	10794366	+	Frame_Shift_Ins	INS	-	-	C			TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	19	10794365	10794366	-	C	INS	ILF3	ENST00000449870	human	ensembl	69_37n	+1	known	frame_shift_ins	c.1917_1918	p.N641fs	0.918:0.998	NULL	pfam_DZF,pfam_Ds-RNA-bd,smart_DZF,smart_Ds-RNA-bd,pfscan_Ds-RNA-bd	-	no_errors	ILF3	HGNC	ENSG00000129351	48	0	0.00	10	2	16.67	-	-	-
INTS5	0	genome.wustl.edu	37	11	62416115	62416116	+	Frame_Shift_Ins	INS	-	-	T			TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	11	62416115	62416116	-	T	INS	INTS5	ENST00000330574	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1437_1436	p.N479fs	1.000:1.000	NULL	NULL	-	no_errors	INTS5	HGNC	ENSG00000185085	28	0	0.00	12	2	14.29	-	-	-
JPH4	0	genome.wustl.edu	37	14	24040435	24040436	+	Frame_Shift_Ins	INS	-	-	C			TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	14	24040435	24040436	-	C	INS	JPH4	ENST00000356300	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1505_1504	p.A502fs	0.051:0.057	pirsf_Junctophilin	pfam_MORN,smart_MORN,pirsf_Junctophilin	-	no_errors	JPH4	HGNC	ENSG00000092051	21	0	0.00	25	8	24.24	-	-	-
KAZALD1	0	genome.wustl.edu	37	10	102824102	102824102	+	Missense_Mutation	SNP	C	C	G			TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	10	102824102	102824102	C	G	SNP	KAZALD1	ENST00000370200	human	ensembl	69_37n	+1	known	missense	c.596	p.P199R	1.000	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pirsf_IGFBP_rP_mac25,pfscan_Ig-like	pfam_Ig_I-set,pfam_Prot_inh_Kazal,pfam_Kazal-type_dom,pfam_Immunoglobulin,pfam_IGFBP-like,smart_Prot_inh_Kazal,smart_Ig_sub,smart_Ig_sub2,pirsf_IGFBP_rP_mac25,pfscan_Ig-like	-	no_errors	KAZALD1	HGNC	ENSG00000107821	53	0	0.00	16	4	20.00	-	-	-
KIAA2022	0	genome.wustl.edu	37	X	73963324	73963324	+	Silent	SNP	C	C	T			TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	X	73963324	73963324	C	T	SNP	KIAA2022	ENST00000055682	human	ensembl	69_37n	-1	known	silent	c.1068	p.K356	0.996	NULL	NULL	-	no_errors	KIAA2022	HGNC	ENSG00000050030	74	0	0.00	101	14	12.17	-	-	-
KIF13B	0	genome.wustl.edu	37	8	29003919	29003919	+	Silent	SNP	G	G	A			TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	8	29003919	29003919	G	A	SNP	KIF13B	ENST00000524189	human	ensembl	69_37n	-1	known	silent	c.2163	p.A721	1.000	NULL	pfam_Kinesin_motor_dom,pfam_Kinesin-like,pfam_CAP-Gly_domain,pfam_KIF1B,pfam_FHA_dom,superfamily_CAP-Gly_domain,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,pfscan_CAP-Gly_domain,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF13B	HGNC	ENSG00000197892	106	0	0.00	47	74	61.16	-	-	-
LIMK1	0	genome.wustl.edu	37	7	73535322	73535323	+	Frame_Shift_Ins	INS	-	-	C			TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	7	73535322	73535323	-	C	INS	LIMK1	ENST00000336180	human	ensembl	69_37n	+1	known	frame_shift_ins	c.1724_1725	p.S578fs	1.000:1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Znf_LIM,pfam_PDZ,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,superfamily_PDZ,smart_Znf_LIM,smart_PDZ,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_LIM,pfscan_PDZ,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	LIMK1	HGNC	ENSG00000106683	65	0	0.00	22	3	12.00	-	-	-
LINC00174	0	genome.wustl.edu	37	7	65842446	65842446	+	RNA	SNP	G	G	A			TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	7	65842446	65842446	G	A	SNP	LINC00174	ENST00000421767	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.786	-	-	-	no_errors	LINC00174	HGNC	ENSG00000179406	25	0	0.00	21	4	16.00	-	-	-
LINGO1	0	genome.wustl.edu	37	15	77908193	77908194	+	Frame_Shift_Ins	INS	-	-	G			TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	15	77908193	77908194	-	G	INS	LINGO1	ENST00000355300	human	ensembl	69_37n	-1	known	frame_shift_ins	c.56_55	p.L19fs	1.000:1.000	NULL	pfam_Leu-rich_rpt,pfam_Ig_I-set,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	LINGO1	HGNC	ENSG00000169783	15	0	0.00	16	2	11.11	-	-	-
LRP2	0	genome.wustl.edu	37	2	169997024	169997025	+	Frame_Shift_Ins	INS	-	-	G			TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	2	169997024	169997025	-	G	INS	LRP2	ENST00000263816	human	ensembl	69_37n	-1	known	frame_shift_ins	c.13140_13139	p.C4381fs	1.000:1.000	superfamily_Growth_fac_rcpt,smart_EGF-like,pfscan_EG-like_dom	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt,superfamily_LDrepeatLR_classA_rpt,superfamily_TIL_dom,smart_LDrepeatLR_classA_rpt,smart_EGF-like,smart_EGF-like_Ca-bd,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP2	HGNC	ENSG00000081479	47	0	0.00	26	5	16.13	-	-	-
LRP4	0	genome.wustl.edu	37	11	46917494	46917495	+	Frame_Shift_Ins	INS	-	-	C			TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	11	46917494	46917495	-	C	INS	LRP4	ENST00000378623	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1124_1123	p.A375fs	0.850:0.844	superfamily_Growth_fac_rcpt,smart_EGF-like	pfam_LDLR_classB_rpt,pfam_LDrepeatLR_classA_rpt,pfam_EGF-like_Ca-bd,superfamily_Growth_fac_rcpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like,smart_EGF-like_Ca-bd,smart_LDLR_classB_rpt,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP4	HGNC	ENSG00000134569	41	0	0.00	16	4	20.00	-	-	-
LRWD1	0	genome.wustl.edu	37	7	102108766	102108766	+	Frame_Shift_Del	DEL	C	C	-			TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	7	102108766	102108766	C	-	DEL	LRWD1	ENST00000292616	human	ensembl	69_37n	+1	known	frame_shift_del	c.861	p.Q289fs	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_WD40_repeat,pfam_Leu-rich_rpt,superfamily_WD40_repeat_dom,smart_Leu-rich_rpt_typical-subtyp,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	LRWD1	HGNC	ENSG00000161036	56	0	0.00	17	2	10.53	-	-	-
MAP1B	0	genome.wustl.edu	37	5	71495076	71495077	+	Frame_Shift_Ins	INS	-	-	C			TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	5	71495076	71495077	-	C	INS	MAP1B	ENST00000296755	human	ensembl	69_37n	+1	known	frame_shift_ins	c.5894_5895	p.E1968fs	0.926:0.932	pfam_MAP1B_neuraxin	pfam_MAP1B_neuraxin	-	no_errors	MAP1B	HGNC	ENSG00000131711	17	0	0.00	31	4	11.43	-	-	-
MAP2K4	0	genome.wustl.edu	37	17	11984789	11984790	+	Frame_Shift_Ins	INS	-	-	T			TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	17	11984789	11984790	-	T	INS	MAP2K4	ENST00000415385	human	ensembl	69_37n	+1	known	frame_shift_ins	c.368_369	p.Y124fs	1.000:0.997	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP2K4	HGNC	ENSG00000065559	46	0	0.00	11	21	65.62	-	-	-
MAP3K12	0	genome.wustl.edu	37	12	53876672	53876672	+	Frame_Shift_Del	DEL	T	T	-			TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	12	53876672	53876672	T	-	DEL	MAP3K12	ENST00000267079	human	ensembl	69_37n	-1	known	frame_shift_del	c.1816	p.M606fs	1.000	pirsf_MAP3K12_MAP3K13	pirsf_MAP3K12_MAP3K13,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K12	HGNC	ENSG00000139625	27	0	0.00	14	2	12.50	-	-	-
MAPRE3	0	genome.wustl.edu	37	2	27248516	27248517	+	Frame_Shift_Ins	INS	-	-	C			TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	2	27248516	27248517	-	C	INS	MAPRE3	ENST00000233121	human	ensembl	69_37n	+1	known	frame_shift_ins	c.535_536	p.C182fs	0.999:1.000	NULL	pfam_EB1_C,pfam_CH-domain,superfamily_CH-domain,pfscan_CH-domain	-	no_errors	MAPRE3	HGNC	ENSG00000084764	44	0	0.00	44	10	18.52	-	-	-
MCM3AP	0	genome.wustl.edu	37	21	47664719	47664720	+	Splice_Site	INS	-	-	C			TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	21	47664719	47664720	-	C	INS	MCM3AP	ENST00000291688	human	ensembl	69_37n	-1	known	splice_site_ins	c.5038+1_5038+1	e23+1	0.996:1.000	-	-	-	no_errors	MCM3AP	HGNC	ENSG00000160294	20	0	0.00	9	2	18.18	-	-	-
MN1	0	genome.wustl.edu	37	22	28196398	28196398	+	Frame_Shift_Del	DEL	G	G	-			TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	22	28196398	28196398	G	-	DEL	MN1	ENST00000302326	human	ensembl	69_37n	-1	known	frame_shift_del	c.134	p.P45fs	1.000	NULL	NULL	-	no_errors	MN1	HGNC	ENSG00000169184	54	0	0.00	11	2	15.38	-	-	-
MYADML2	0	genome.wustl.edu	37	17	79898822	79898823	+	Frame_Shift_Ins	INS	-	-	G			TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	17	79898822	79898823	-	G	INS	MYADML2	ENST00000330655	human	ensembl	69_37n	-1	known	frame_shift_ins	c.796_795	p.N265fs	0.007:0.000	pfam_MARVEL-like_dom	pfam_MARVEL-like_dom	-	no_errors	MYADML2	HGNC	ENSG00000185105	20	0	0.00	8	2	20.00	-	-	-
NBL1	0	genome.wustl.edu	37	1	19981543	19981544	+	Frame_Shift_Ins	INS	-	-	G			TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	1	19981543	19981544	-	G	INS	NBL1	ENST00000289749	human	ensembl	69_37n	+1	known	frame_shift_ins	c.125_126	p.A44fs	1.000:0.999	NULL	pfam_DAN,pfam_Cys_knot,smart_Cys_knot_C	-	no_errors	NBL1	HGNC	ENSG00000158747	31	0	0.00	4	2	33.33	-	-	-
NDOR1	0	genome.wustl.edu	37	9	140108277	140108278	+	Frame_Shift_Ins	INS	-	-	G			TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	9	140108277	140108278	-	G	INS	NDOR1	ENST00000371521	human	ensembl	69_37n	+1	known	frame_shift_ins	c.357_358	p.S121fs	0.230:0.998	pfam_Flavodoxin/NO_synth,pfscan_Flavodoxin/NO_synth,prints_Flavdoxin	pfam_FAD-binding_1,pfam_Flavodoxin/NO_synth,pfam_OxRdtase_FAD/NAD-bd,superfamily_Riboflavin_synthase-like_b-brl,pfscan_Flavodoxin/NO_synth,prints_Flavoprot_Pyr_Nucl_cyt_Rdtase,prints_Flavdoxin	-	no_errors	NDOR1	HGNC	ENSG00000188566	23	0	0.00	5	2	28.57	-	-	-
NEURL	0	genome.wustl.edu	37	10	105330708	105330709	+	Frame_Shift_Ins	INS	-	-	G			TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	10	105330708	105330709	-	G	INS	NEURL	ENST00000369780	human	ensembl	69_37n	+1	known	frame_shift_ins	c.165_166	p.L57fs	0.002:0.993	NULL	pfam_Neu_Z,smart_Neu_Z,pfscan_Neu_Z,pfscan_Znf_RING	-	no_errors	NEURL	HGNC	ENSG00000107954	15	0	0.00	10	2	16.67	-	-	-
PALM3	0	genome.wustl.edu	37	19	14167592	14167592	+	Missense_Mutation	SNP	G	G	T			TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	19	14167592	14167592	G	T	SNP	PALM3	ENST00000340790	human	ensembl	69_37n	-1	known	missense	c.151	p.L51I	1.000	NULL	NULL	-	no_errors	PALM3	HGNC	ENSG00000187867	62	0	0.00	16	4	20.00	-	-	-
PCDH10	0	genome.wustl.edu	37	4	134071648	134071649	+	Frame_Shift_Ins	INS	-	-	C			TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	4	134071648	134071649	-	C	INS	PCDH10	ENST00000264360	human	ensembl	69_37n	+1	known	frame_shift_ins	c.353_354	p.S121fs	1.000:1.000	superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH10	HGNC	ENSG00000138650	20	0	0.00	12	3	20.00	-	-	-
PCDH19	0	genome.wustl.edu	37	X	99662504	99662505	+	Frame_Shift_Ins	INS	-	-	G			TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	X	99662504	99662505	-	G	INS	PCDH19	ENST00000373034	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1092_1091	p.Y366fs	0.984:1.000	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH19	HGNC	ENSG00000165194	25	0	0.00	13	2	13.33	-	-	-
PCDH19	0	genome.wustl.edu	37	X	99662746	99662746	+	Missense_Mutation	SNP	G	G	A			TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	X	99662746	99662746	G	A	SNP	PCDH19	ENST00000373034	human	ensembl	69_37n	-1	known	missense	c.850	p.R284C	0.087	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH19	HGNC	ENSG00000165194	74	0	0.00	33	14	29.79	-	-	-
PCDHA5	0	genome.wustl.edu	37	5	140202792	140202792	+	Missense_Mutation	SNP	G	G	A			TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	5	140202792	140202792	G	A	SNP	PCDHA5	ENST00000529859	human	ensembl	69_37n	+1	known	missense	c.1432	p.A478T	0.993	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA5	HGNC	ENSG00000204965	67	0	0.00	22	4	15.38	-	-	-
PDZD3	0	genome.wustl.edu	37	11	119058334	119058335	+	Frame_Shift_Ins	INS	-	-	C			TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	11	119058334	119058335	-	C	INS	PDZD3	ENST00000392817	human	ensembl	69_37n	+1	known	frame_shift_ins	c.780_781	p.G262fs	0.842:0.987	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PDZD3	HGNC	ENSG00000172367	25	0	0.00	12	2	14.29	-	-	-
PHF1	0	genome.wustl.edu	37	6	33380049	33380050	+	Frame_Shift_Ins	INS	-	-	C			TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	6	33380049	33380050	-	C	INS	PHF1	ENST00000374516	human	ensembl	69_37n	+1	known	frame_shift_ins	c.9_10	p.R5fs	1.000:1.000	NULL	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Tudor,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	PHF1	HGNC	ENSG00000112511	41	0	0.00	26	3	10.34	-	-	-
PIK3CA	0	genome.wustl.edu	37	3	178936082	178936082	+	Missense_Mutation	SNP	G	G	A			TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	3	178936082	178936082	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	+1	known	missense	c.1624	p.E542K	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	85	0	0.00	38	16	29.63	-	-	-
PIK3CD	0	genome.wustl.edu	37	1	9777113	9777114	+	Frame_Shift_Ins	INS	-	-	CC			TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	1	9777113	9777114	-	CC	INS	PIK3CD	ENST00000377346	human	ensembl	69_37n	+1	known	frame_shift_ins	c.877_878	p.Q295fs	0.001:0.080	NULL	pfam_PI3/4_kinase_cat_dom,pfam_PInositide-3_kin_accessory_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,pfam_PI3K_Ras-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CD	HGNC	ENSG00000171608	41	0	0.00	11	2	15.38	-	-	-
PLEKHG6	0	genome.wustl.edu	37	12	6437069	6437070	+	Frame_Shift_Ins	INS	-	-	G			TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	12	6437069	6437070	-	G	INS	PLEKHG6	ENST00000011684	human	ensembl	69_37n	+1	known	frame_shift_ins	c.2320_2321	p.P776fs	0.990:0.941	NULL	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PLEKHG6	HGNC	ENSG00000008323	15	0	0.00	12	2	14.29	-	-	-
PLXND1	0	genome.wustl.edu	37	3	129303234	129303235	+	Frame_Shift_Ins	INS	-	-	G			TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	3	129303234	129303235	-	G	INS	PLXND1	ENST00000324093	human	ensembl	69_37n	-1	known	frame_shift_ins	c.2023_2022	p.N674fs	0.000:0.000	NULL	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_IPT_TIG_rcpt,pfam_Semaphorin/CD100_Ag,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_IPT_TIG_rcpt,pfscan_Semaphorin/CD100_Ag	-	no_errors	PLXND1	HGNC	ENSG00000004399	25	0	0.00	13	2	13.33	-	-	-
POLD1	0	genome.wustl.edu	37	19	50906420	50906421	+	Frame_Shift_Ins	INS	-	-	C			TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	19	50906420	50906421	-	C	INS	POLD1	ENST00000440232	human	ensembl	69_37n	+1	known	frame_shift_ins	c.1081_1082	p.I363fs	0.991:1.000	pfam_DNA-dir_DNA_pol_B_exonuc,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_B	pfam_DNA-dir_DNA_pol_B_multi_dom,pfam_DNA-dir_DNA_pol_B_exonuc,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_B,prints_DNA-dir_DNA_pol_B,tigrfam_DNA-dir_DNA_pol_B_pol2	-	no_errors	POLD1	HGNC	ENSG00000062822	37	0	0.00	16	2	11.11	-	-	-
POLR2A	0	genome.wustl.edu	37	17	7388097	7388098	+	Frame_Shift_Ins	INS	-	-	C			TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	17	7388097	7388098	-	C	INS	POLR2A	ENST00000322644	human	ensembl	69_37n	+1	known	frame_shift_ins	c.14_15	p.S8fs	1.000:0.998	NULL	pfam_RNA_pol_Rpb1_1,pfam_RNA_pol_Rpb1_5,pfam_RNA_pol_Rpb1_6,pfam_RNA_pol_asu,pfam_RNA_pol_Rpb1_7,pfam_RNA_pol_Rpb1_3,pfam_RNA_pol_Rpb1_4,pfam_RNA_pol_II_repeat_euk,smart_RNA_pol_N	-	no_errors	POLR2A	HGNC	ENSG00000181222	19	0	0.00	8	4	33.33	-	-	-
PRPF38B	0	genome.wustl.edu	37	1	109241968	109241969	+	Frame_Shift_Ins	INS	-	-	G			TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	1	109241968	109241969	-	G	INS	PRPF38B	ENST00000370025	human	ensembl	69_37n	+1	known	frame_shift_ins	c.967_968	p.L325fs	1.000:0.997	NULL	pfam_PRP38	-	no_errors	PRPF38B	HGNC	ENSG00000134186	41	0	0.00	9	2	18.18	-	-	-
PUS10	0	genome.wustl.edu	37	2	61238927	61238927	+	Silent	SNP	A	A	G			TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	2	61238927	61238927	A	G	SNP	PUS10	ENST00000316752	human	ensembl	69_37n	-1	known	silent	c.99	p.F33	0.988	NULL	superfamily_PsdUridine_synth_cat_dom	-	no_errors	PUS10	HGNC	ENSG00000162927	47	0	0.00	26	12	31.58	-	-	-
RALGAPB	0	genome.wustl.edu	37	20	37146232	37146233	+	Frame_Shift_Ins	INS	-	-	C			TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	20	37146232	37146233	-	C	INS	RALGAPB	ENST00000262879	human	ensembl	69_37n	+1	known	frame_shift_ins	c.1135_1136	p.H382fs	0.999:1.000	NULL	superfamily_ARM-type_fold,pfscan_Rap_GAP	-	no_errors	RALGAPB	HGNC	ENSG00000170471	97	0	0.00	169	22	11.52	-	-	-
RALGAPB	0	genome.wustl.edu	37	20	37203484	37203485	+	Frame_Shift_Ins	INS	-	-	C			TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	20	37203484	37203485	-	C	INS	RALGAPB	ENST00000262879	human	ensembl	69_37n	+1	known	frame_shift_ins	c.4359_4360	p.H1455fs	0.992:1.000	NULL	superfamily_ARM-type_fold,pfscan_Rap_GAP	-	no_errors	RALGAPB	HGNC	ENSG00000170471	84	0	0.00	43	6	12.24	-	-	-
RBFOX3	0	genome.wustl.edu	37	17	77111769	77111772	+	Frame_Shift_Del	DEL	TACT	TACT	-			TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	TACT	TACT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	17	77111769	77111772	TACT	-	DEL	RBFOX3	ENST00000415831	human	ensembl	69_37n	-1	known	frame_shift_del	c.29_26	p.Q9fs	1.000:1.000:1.000:1.000	pirsf_RNA-bd_Fox-1	pfam_Fox-1_C_dom,pfam_RRM_dom,smart_RRM_dom,pirsf_RNA-bd_Fox-1,pfscan_RRM_dom	-	no_errors	RBFOX3	HGNC	ENSG00000167281	8	0	0.00	4	2	33.33	-	-	-
RNA5-8SP6	0	genome.wustl.edu	37	Y	10037868	10037868	+	RNA	SNP	G	G	A			TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	Y	10037868	10037868	G	A	SNP	RNA5-8SP6	ENST00000515896	human	ensembl	69_37n	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RNA5-8SP6	HGNC	ENSG00000251705	13	0	0.00	9	7	43.75	-	-	-
RNMTL1	0	genome.wustl.edu	37	17	694866	694866	+	Missense_Mutation	SNP	G	G	A			TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	17	694866	694866	G	A	SNP	RNMTL1	ENST00000304478	human	ensembl	69_37n	+1	known	missense	c.820	p.V274M	0.004	pfam_SpoU_MeTrfase	pfam_SpoU_MeTrfase,pfam_SpoU_subst-bd,smart_SpoU_subst-bd	-	no_errors	RNMTL1	HGNC	ENSG00000171861	46	0	0.00	14	10	41.67	-	-	-
ROCK2	0	genome.wustl.edu	37	2	11355160	11355160	+	Nonsense_Mutation	SNP	A	A	T			TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	2	11355160	11355160	A	T	SNP	ROCK2	ENST00000315872	human	ensembl	69_37n	-1	known	nonsense	c.1742	p.L581*	1.000	pirsf_Rho-assoc_coiled-coil_kinase	pfam_Prot_kinase_cat_dom,pfam_Rho-bd,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pleckstrin_homology,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_tRNA-bd_arm,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,smart_Pleckstrin_homology,smart_Prot_Kinase_C-like_PE/DAG-bd,pirsf_Rho-assoc_coiled-coil_kinase,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom	-	no_errors	ROCK2	HGNC	ENSG00000134318	90	0	0.00	44	28	38.89	-	-	-
RXRA	0	genome.wustl.edu	37	9	137313586	137313586	+	Frame_Shift_Del	DEL	G	G	-			TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	9	137313586	137313586	G	-	DEL	RXRA	ENST00000481739	human	ensembl	69_37n	+1	known	frame_shift_del	c.845	p.A283fs	1.000	superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Nucl_hrmn_rcpt_lig-bd_core,prints_Str_hrmn_rcpt	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_DUF3345,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Retinoid-X_rcpt/HNF4,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_COUP_TF,prints_Retinoic_acid_rcpt	-	no_errors	RXRA	HGNC	ENSG00000186350	110	0	0.00	14	2	12.50	-	-	-
SBF1	0	genome.wustl.edu	37	22	50898755	50898756	+	Frame_Shift_Ins	INS	-	-	G			TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	22	50898755	50898756	-	G	INS	SBF1	ENST00000380817	human	ensembl	69_37n	-1	known	frame_shift_ins	c.3229_3228	p.S1076fs	0.053:0.039	NULL	pfam_SBF2,pfam_DENN_dom,pfam_uDENN_dom,pfam_Myotub-related,pfam_dDENN_dom,pfam_GRAM,pfam_Pleckstrin_homology,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,smart_GRAM,smart_Pleckstrin_homology,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom,pfscan_Pleckstrin_homology	-	no_errors	SBF1	HGNC	ENSG00000100241	80	0	0.00	21	4	16.00	-	-	-
SELP	0	genome.wustl.edu	37	1	169564091	169564091	+	Missense_Mutation	SNP	A	A	G			TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	1	169564091	169564091	A	G	SNP	SELP	ENST00000263686	human	ensembl	69_37n	-1	known	missense	c.2126	p.V709A	0.000	superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,pfam_C-type_lectin,superfamily_C-type_lectin_fold,superfamily_Complement_control_module,smart_C-type_lectin,smart_Sushi_SCR_CCP,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Sushi_SCR_CCP,prints_Selectin_superfamily	-	no_errors	SELP	HGNC	ENSG00000174175	94	0	0.00	64	61	48.80	-	-	-
SERPINF1	0	genome.wustl.edu	37	17	1670275	1670276	+	Frame_Shift_Ins	INS	-	-	C			TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	17	1670275	1670276	-	C	INS	SERPINF1	ENST00000254722	human	ensembl	69_37n	+1	known	frame_shift_ins	c.71_72	p.E27fs	0.004:0.000	NULL	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	-	no_errors	SERPINF1	HGNC	ENSG00000132386	22	0	0.00	15	2	11.76	-	-	-
SETDB1	0	genome.wustl.edu	37	1	150917623	150917624	+	Frame_Shift_Ins	INS	-	-	G			TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	1	150917623	150917624	-	G	INS	SETDB1	ENST00000368962	human	ensembl	69_37n	+1	known	frame_shift_ins	c.1179_1180	p.T396fs	0.000:0.000	NULL	smart_Tudor	-	no_errors	SETDB1	HGNC	ENSG00000143379	58	0	0.00	60	8	11.76	-	-	-
SLC16A1	0	genome.wustl.edu	37	1	113460537	113460538	+	Frame_Shift_Ins	INS	-	-	G			TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	1	113460537	113460538	-	G	INS	SLC16A1	ENST00000369626	human	ensembl	69_37n	-1	known	frame_shift_ins	c.491_490	p.L164fs	0.998:0.612	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Monocarb_transpt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Monocarb_transpt	-	no_errors	SLC16A1	HGNC	ENSG00000155380	34	0	0.00	12	2	14.29	-	-	-
SLC35G2	0	genome.wustl.edu	37	3	136573486	136573486	+	Frame_Shift_Del	DEL	A	A	-			TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	3	136573486	136573486	A	-	DEL	SLC35G2	ENST00000393079	human	ensembl	69_37n	+1	known	frame_shift_del	c.184	p.66fs	1.000	NULL	pfam_DMT	-	no_errors	SLC35G2	HGNC	ENSG00000168917	32	0	0.00	24	4	14.29	-	-	-
SLC46A1	0	genome.wustl.edu	37	17	26732938	26732939	+	Frame_Shift_Ins	INS	-	-	C			TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	17	26732938	26732939	-	C	INS	SLC46A1	ENST00000440501	human	ensembl	69_37n	-1	known	frame_shift_ins	c.195_194	p.C66fs	0.961:0.287	pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC46A1	HGNC	ENSG00000076351	17	0	0.00	6	2	25.00	-	-	-
SLC4A3	0	genome.wustl.edu	37	2	220494110	220494111	+	Frame_Shift_Ins	INS	-	-	C			TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	2	220494110	220494111	-	C	INS	SLC4A3	ENST00000273063	human	ensembl	69_37n	+1	known	frame_shift_ins	c.462_463	p.H156fs	0.015:0.049	prints_Anion_exchange_3	pfam_HCO3_transpt_C,pfam_HCO3_transpt_cyt,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,prints_Anion_exchange_3,prints_Anion_exchange,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A3	HGNC	ENSG00000114923	51	0	0.00	16	7	30.43	-	-	-
SMTN	0	genome.wustl.edu	37	22	31487798	31487799	+	Frame_Shift_Ins	INS	-	-	C			TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	22	31487798	31487799	-	C	INS	SMTN	ENST00000347557	human	ensembl	69_37n	+1	known	frame_shift_ins	c.1597_1598	p.S536fs	1.000:0.994	NULL	pfam_Smoothelin,pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	-	no_errors	SMTN	HGNC	ENSG00000183963	39	0	0.00	17	2	10.53	-	-	-
SPATA18	0	genome.wustl.edu	37	4	52917821	52917822	+	RNA	INS	-	-	C			TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	4	52917821	52917822	-	C	INS	SPATA18	ENST00000506829	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.001:0.002	-	-	-	no_errors	SPATA18	HGNC	ENSG00000163071	21	0	0.00	7	2	22.22	-	-	-
SPOP	0	genome.wustl.edu	37	17	47688736	47688736	+	Frame_Shift_Del	DEL	A	A	-			TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	17	47688736	47688736	A	-	DEL	SPOP	ENST00000347630	human	ensembl	69_37n	-1	known	frame_shift_del	c.564	p.D188fs	0.993	superfamily_BTB/POZ_fold	pfam_BTB_POZ,pfam_MATH,superfamily_TRAF-like,superfamily_BTB/POZ_fold,smart_MATH,smart_BTB/POZ-like,pfscan_BTB/POZ-like,pfscan_MATH	-	no_errors	SPOP	HGNC	ENSG00000121067	55	0	0.00	49	9	15.00	-	-	-
SRRT	0	genome.wustl.edu	37	7	100479331	100479332	+	Frame_Shift_Ins	INS	-	-	G			TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	7	100479331	100479332	-	G	INS	SRRT	ENST00000388793	human	ensembl	69_37n	+1	known	frame_shift_ins	c.303_304	p.G104fs	0.996:1.000	NULL	pfam_Arsenite-R_2,pfam_DUF3546	-	no_errors	SRRT	HGNC	ENSG00000087087	10	0	0.00	13	4	23.53	-	-	-
STAB1	0	genome.wustl.edu	37	3	52547907	52547908	+	Frame_Shift_Ins	INS	-	-	C			TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	3	52547907	52547908	-	C	INS	STAB1	ENST00000321725	human	ensembl	69_37n	+1	known	frame_shift_ins	c.3357_3358	p.R1121fs	0.951:0.999	superfamily_FAS1_domain,smart_FAS1_domain	pfam_FAS1_domain,pfam_Link,superfamily_C-type_lectin_fold,superfamily_FAS1_domain,smart_EGF-like,smart_EGF_laminin,smart_FAS1_domain,smart_EGF-like_Ca-bd,smart_Link,pfscan_EG-like_dom,pfscan_FAS1_domain,pfscan_Link	-	no_errors	STAB1	HGNC	ENSG00000010327	66	0	0.00	5	3	37.50	-	-	-
SULT2B1	0	genome.wustl.edu	37	19	49102489	49102490	+	Frame_Shift_Ins	INS	-	-	A			TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	19	49102489	49102490	-	A	INS	SULT2B1	ENST00000201586	human	ensembl	69_37n	+1	known	frame_shift_ins	c.924_925	p.W308fs	0.420:0.969	NULL	pfam_Sulfotransferase_dom	-	no_errors	SULT2B1	HGNC	ENSG00000088002	19	0	0.00	12	2	14.29	-	-	-
TAX1BP1	0	genome.wustl.edu	37	7	27831635	27831636	+	Frame_Shift_Ins	INS	-	-	T			TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	7	27831635	27831636	-	T	INS	TAX1BP1	ENST00000396319	human	ensembl	69_37n	+1	known	frame_shift_ins	c.1049_1050	p.L352fs	0.000:0.000	pfam_CoCoA	pfam_CoCoA	-	no_errors	TAX1BP1	HGNC	ENSG00000106052	43	0	0.00	11	2	15.38	-	-	-
TBC1D10C	0	genome.wustl.edu	37	11	67176564	67176565	+	Frame_Shift_Ins	INS	-	-	C			TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	11	67176564	67176565	-	C	INS	TBC1D10C	ENST00000312390	human	ensembl	69_37n	+1	known	frame_shift_ins	c.953_954	p.A321fs	0.995:0.756	superfamily_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D10C	HGNC	ENSG00000175463	13	0	0.00	7	2	22.22	-	-	-
TBX2	0	genome.wustl.edu	37	17	59479053	59479054	+	Frame_Shift_Ins	INS	-	-	C			TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	17	59479053	59479054	-	C	INS	TBX2	ENST00000240328	human	ensembl	69_37n	+1	novel	frame_shift_ins	c.404_405	p.F138fs	1.000:1.000	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box	pfam_TF_T-box,pfam_TBX,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box,prints_TF_Brachyury	-	no_errors	TBX2	HGNC	ENSG00000121068	23	0	0.00	7	2	22.22	-	-	-
TNPO3	0	genome.wustl.edu	37	7	128610258	128610259	+	Frame_Shift_Ins	INS	-	-	G			TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	7	128610258	128610259	-	G	INS	TNPO3	ENST00000393245	human	ensembl	69_37n	-1	known	frame_shift_ins	c.2644_2643	p.Y881fs	1.000:0.805	NULL	pfam_Exportin-1/Importin-b-like,superfamily_ARM-type_fold	-	no_errors	TNPO3	HGNC	ENSG00000064419	46	0	0.00	33	10	23.26	-	-	-
TNS1	0	genome.wustl.edu	37	2	218712887	218712889	+	In_Frame_Del	DEL	GCT	GCT	-			TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	GCT	GCT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	2	218712887	218712889	GCT	-	DEL	TNS1	ENST00000171887	human	ensembl	69_37n	-1	known	in_frame_del	c.1978_1976	p.Q659in_frame_del	1.000:1.000:0.994	NULL	pfam_PTB,pfam_Tensin_phosphatase_C2-dom,pfam_SH2,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Tyr_Pase_cat,smart_SH2,smart_PTyr_interaction_dom,pfscan_SH2,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	TNS1	HGNC	ENSG00000079308	43	0	0.00	32	4	10.81	-	-	-
TRAF7	0	genome.wustl.edu	37	16	2223196	2223196	+	Frame_Shift_Del	DEL	G	G	-			TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	16	2223196	2223196	G	-	DEL	TRAF7	ENST00000326181	human	ensembl	69_37n	+1	known	frame_shift_del	c.808	p.N271fs	0.999	superfamily_TRAF-like,pfscan_Znf_TRAF	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_TRAF-like,smart_Znf_RING,smart_WD40_repeat,pfscan_Znf_RING,pfscan_Znf_TRAF,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	TRAF7	HGNC	ENSG00000131653	36	0	0.00	7	2	22.22	-	-	-
TSPEAR	0	genome.wustl.edu	37	21	45987772	45987773	+	Frame_Shift_Ins	INS	-	-	G			TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	21	45987772	45987773	-	G	INS	TSPEAR	ENST00000323084	human	ensembl	69_37n	-1	known	frame_shift_ins	c.200_199	p.R67fs	0.067:0.978	superfamily_ConA-like_lec_gl,smart_Laminin_G	pfam_EPTP,superfamily_ConA-like_lec_gl,smart_Laminin_G,pfscan_EAR	-	no_errors	TSPEAR	HGNC	ENSG00000175894	47	0	0.00	11	2	15.38	-	-	-
TSPYL5	0	genome.wustl.edu	37	8	98289663	98289664	+	Frame_Shift_Ins	INS	-	-	G			TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	8	98289663	98289664	-	G	INS	TSPYL5	ENST00000322128	human	ensembl	69_37n	-1	known	frame_shift_ins	c.410_409	p.R137fs	0.730:0.768	NULL	pfam_NAP_family	-	no_errors	TSPYL5	HGNC	ENSG00000180543	16	0	0.00	17	2	10.53	-	-	-
TTLL10	0	genome.wustl.edu	37	1	1116222	1116223	+	Frame_Shift_Ins	INS	-	-	G			TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	1	1116222	1116223	-	G	INS	TTLL10	ENST00000379289	human	ensembl	69_37n	+1	known	frame_shift_ins	c.737_738	p.V249fs	0.000:0.000	NULL	pfam_Tub_tyr_ligase	-	no_errors	TTLL10	HGNC	ENSG00000162571	9	0	0.00	4	2	33.33	-	-	-
VAMP2	0	genome.wustl.edu	37	17	8065660	8065661	+	Frame_Shift_Ins	INS	-	-	G			TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	17	8065660	8065661	-	G	INS	VAMP2	ENST00000316509	human	ensembl	69_37n	-1	known	frame_shift_ins	c.30_29	p.A11fs	0.999:0.998	pirsf_Synaptobrevin_met/fun	pfam_Synaptobrevin,pirsf_Synaptobrevin_met/fun,pfscan_Synaptobrevin,prints_Synaptobrevin	-	no_errors	VAMP2	HGNC	ENSG00000220205	16	0	0.00	10	2	16.67	-	-	-
WNT16	0	genome.wustl.edu	37	7	120971878	120971879	+	Frame_Shift_Ins	INS	-	-	G			TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	7	120971878	120971879	-	G	INS	WNT16	ENST00000222462	human	ensembl	69_37n	+1	known	frame_shift_ins	c.493_494	p.C168fs	1.000:1.000	pfam_Wnt,smart_Wnt,prints_Wnt	pfam_Wnt,smart_Wnt,prints_Wnt16,prints_Wnt	-	no_errors	WNT16	HGNC	ENSG00000002745	38	0	0.00	8	2	20.00	-	-	-
ZBED1	0	genome.wustl.edu	37	X	2408674	2408674	+	Missense_Mutation	SNP	G	G	T			TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	X	2408674	2408674	G	T	SNP	ZBED1	ENST00000381218	human	ensembl	69_37n	-1	known	missense	c.87	p.F29L	0.994	pfam_Znf_BED_prd,smart_Znf_BED_prd,pfscan_Znf_BED_prd	pfam_HATC,pfam_Znf_BED_prd,superfamily_RNaseH-like_dom,smart_Znf_BED_prd,pfscan_Znf_BED_prd	-	no_errors	ZBED1	HGNC	ENSG00000214717	132	0	0.00	60	20	25.00	-	-	-
ZFHX4	0	genome.wustl.edu	37	8	77617546	77617547	+	Frame_Shift_Ins	INS	-	-	G			TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	8	77617546	77617547	-	G	INS	ZFHX4	ENST00000521891	human	ensembl	69_37n	+1	known	frame_shift_ins	c.1223_1224	p.L411fs	1.000:1.000	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeodomain,pfscan_Homeodomain,pfscan_Znf_C2H2	-	no_errors	ZFHX4	HGNC	ENSG00000091656	55	0	0.00	27	3	10.00	-	-	-
ZNF519	0	genome.wustl.edu	37	18	14124364	14124364	+	Missense_Mutation	SNP	T	T	A			TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	18	14124364	14124364	T	A	SNP	ZNF519	ENST00000590202	human	ensembl	69_37n	-1	known	missense	c.115	p.N39Y	0.254	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF519	HGNC	ENSG00000175322	92	0	0.00	39	36	48.00	-	-	-
ZNF862	0	genome.wustl.edu	37	7	149561357	149561357	+	Frame_Shift_Del	DEL	C	C	-			TCGA-E9-A1NI-01A-11W-A16H-09	TCGA-E9-A1NI-10A-01D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3bf0b169-f870-4887-be06-414f20f1dcf0	cc9a8594-88b6-4f78-a840-9173a75e2fdb	7	149561357	149561357	C	-	DEL	ZNF862	ENST00000223210	human	ensembl	69_37n	+1	known	frame_shift_del	c.3494	p.M1168fs	0.000	NULL	pfam_Krueppel-associated_box,pfam_HATC,superfamily_Krueppel-associated_box,superfamily_RNaseH-like_dom,smart_Krueppel-associated_box,smart_Znf_TTF,pfscan_Krueppel-associated_box	-	no_errors	ZNF862	HGNC	ENSG00000106479	34	0	0.00	12	2	14.29	-	-	-
