Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
ARNT	0	genome.wustl.edu	37	1	150786681	150786681	+	Missense_Mutation	SNP	G	G	T			TCGA-E9-A245-01A-22D-A16D-09	TCGA-E9-A245-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bdd591f9-21d1-4ce5-bfde-30e7ac3d440a	5238df31-1273-4814-98cc-e8f1c180ee3d	1	150786681	150786681	G	T	SNP	ARNT	ENST00000358595	human	ensembl	69_37n	-1	known	missense	c.1985	p.T662N	0.975	NULL	pfam_PAS_fold_3,pfam_PAS_fold,pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,smart_PAS,smart_PAC,pfscan_PAS,pfscan_HLH_DNA-bd,prints_Nuc_translocat,tigrfam_PAS	-	no_errors	ARNT	HGNC	ENSG00000143437	38	0	0.00	36	4	10.00	-	-	-
ASTE1	0	genome.wustl.edu	37	3	130733046	130733047	+	Frame_Shift_Ins	INS	-	-	T			TCGA-E9-A245-01A-22D-A16D-09	TCGA-E9-A245-10A-01D-A16D-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bdd591f9-21d1-4ce5-bfde-30e7ac3d440a	5238df31-1273-4814-98cc-e8f1c180ee3d	3	130733046	130733047	-	T	INS	ASTE1	ENST00000264992	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1895_1894	p.R632fs	0.003:0.014	NULL	pfam_XPG_DNA_repair_N	-	no_errors	ASTE1	HGNC	ENSG00000034533	53	0	0.00	27	5	15.62	-	-	-
CARTPT	0	genome.wustl.edu	37	5	71015730	71015732	+	In_Frame_Del	DEL	GAA	GAA	-			TCGA-E9-A245-01A-22D-A16D-09	TCGA-E9-A245-10A-01D-A16D-09	GAA	GAA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bdd591f9-21d1-4ce5-bfde-30e7ac3d440a	5238df31-1273-4814-98cc-e8f1c180ee3d	5	71015730	71015732	GAA	-	DEL	CARTPT	ENST00000296777	human	ensembl	69_37n	+1	known	in_frame_del	c.183_185	p.K63in_frame_del	1.000:1.000:1.000	pfam_CART	pfam_CART,superfamily_CART	-	no_errors	CARTPT	HGNC	ENSG00000164326	44	0	0.00	24	6	20.00	-	-	-
DLGAP5	0	genome.wustl.edu	37	14	55647930	55647930	+	Splice_Site	SNP	C	C	A			TCGA-E9-A245-01A-22D-A16D-09	TCGA-E9-A245-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bdd591f9-21d1-4ce5-bfde-30e7ac3d440a	5238df31-1273-4814-98cc-e8f1c180ee3d	14	55647930	55647930	C	A	SNP	DLGAP5	ENST00000247191	human	ensembl	69_37n	-1	known	splice_site	c.580+1	e4+1	1.000	-	-	-	no_errors	DLGAP5	HGNC	ENSG00000126787	216	0	0.00	97	50	34.01	-	-	-
DOCK11	0	genome.wustl.edu	37	X	117722171	117722171	+	Nonsense_Mutation	SNP	G	G	T			TCGA-E9-A245-01A-22D-A16D-09	TCGA-E9-A245-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bdd591f9-21d1-4ce5-bfde-30e7ac3d440a	5238df31-1273-4814-98cc-e8f1c180ee3d	X	117722171	117722171	G	T	SNP	DOCK11	ENST00000276202	human	ensembl	69_37n	+1	known	nonsense	c.1867	p.E623*	1.000	NULL	pfam_DOCK,pfam_DUF3398,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	DOCK11	HGNC	ENSG00000147251	128	0	0.00	56	42	42.86	-	-	-
FAM135B	0	genome.wustl.edu	37	8	139190894	139190894	+	Missense_Mutation	SNP	T	T	C			TCGA-E9-A245-01A-22D-A16D-09	TCGA-E9-A245-10A-01D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bdd591f9-21d1-4ce5-bfde-30e7ac3d440a	5238df31-1273-4814-98cc-e8f1c180ee3d	8	139190894	139190894	T	C	SNP	FAM135B	ENST00000395297	human	ensembl	69_37n	-1	known	missense	c.913	p.K305E	0.998	NULL	pfam_DUF676_lipase-like,pfam_DUF3657,pfam_PGAP1-like	-	no_errors	FAM135B	HGNC	ENSG00000147724	61	0	0.00	57	8	12.31	-	-	-
FAM194A	0	genome.wustl.edu	37	3	150421569	150421569	+	Silent	SNP	T	T	C			TCGA-E9-A245-01A-22D-A16D-09	TCGA-E9-A245-10A-01D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bdd591f9-21d1-4ce5-bfde-30e7ac3d440a	5238df31-1273-4814-98cc-e8f1c180ee3d	3	150421569	150421569	T	C	SNP	FAM194A	ENST00000295910	human	ensembl	69_37n	-1	known	silent	c.117	p.E39	0.000	NULL	NULL	-	no_errors	FAM194A	HGNC	ENSG00000163645	14	0	0.00	17	9	34.62	-	-	-
GATA3	0	genome.wustl.edu	37	10	8115928	8115929	+	Frame_Shift_Ins	INS	-	-	AT			TCGA-E9-A245-01A-22D-A16D-09	TCGA-E9-A245-10A-01D-A16D-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bdd591f9-21d1-4ce5-bfde-30e7ac3d440a	5238df31-1273-4814-98cc-e8f1c180ee3d	10	8115928	8115929	-	AT	INS	GATA3	ENST00000379328	human	ensembl	69_37n	+1	known	frame_shift_ins	c.1277_1278	p.S427fs	0.981:0.204	pirsf_TF_GATA-1/2/3	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	GATA3	HGNC	ENSG00000107485	41	0	0.00	17	7	29.17	-	-	-
GLB1	0	genome.wustl.edu	37	3	33110406	33110406	+	Missense_Mutation	SNP	T	T	C			TCGA-E9-A245-01A-22D-A16D-09	TCGA-E9-A245-10A-01D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bdd591f9-21d1-4ce5-bfde-30e7ac3d440a	5238df31-1273-4814-98cc-e8f1c180ee3d	3	33110406	33110406	T	C	SNP	GLB1	ENST00000445488	human	ensembl	69_37n	-1	known	missense	c.446	p.D149G	0.996	pfam_Glycoside_Hdrlase_35,pfam_Glyco_hydro_42_N,superfamily_Glycoside_hydrolase_SF	pfam_Glycoside_Hdrlase_35,pfam_Glyco_hydro_42_N,superfamily_Glycoside_hydrolase_SF,superfamily_Galactose-bd-like,prints_Glycoside_Hdrlase_35	-	no_errors	GLB1	HGNC	ENSG00000170266	47	0	0.00	32	7	17.95	-	-	-
IL32	0	genome.wustl.edu	37	16	3119020	3119020	+	Silent	SNP	A	A	G			TCGA-E9-A245-01A-22D-A16D-09	TCGA-E9-A245-10A-01D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bdd591f9-21d1-4ce5-bfde-30e7ac3d440a	5238df31-1273-4814-98cc-e8f1c180ee3d	16	3119020	3119020	A	G	SNP	IL32	ENST00000396890	human	ensembl	69_37n	+1	known	silent	c.369	p.R123	0.000	NULL	NULL	-	no_errors	IL32	HGNC	ENSG00000008517	18	0	0.00	7	4	36.36	-	-	-
INCA1	0	genome.wustl.edu	37	17	4892728	4892728	+	Silent	SNP	G	G	T			TCGA-E9-A245-01A-22D-A16D-09	TCGA-E9-A245-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bdd591f9-21d1-4ce5-bfde-30e7ac3d440a	5238df31-1273-4814-98cc-e8f1c180ee3d	17	4892728	4892728	G	T	SNP	INCA1	ENST00000396829	human	ensembl	69_37n	-1	known	silent	c.390	p.I130	0.993	NULL	NULL	-	no_errors	INCA1	HGNC	ENSG00000196388	41	0	0.00	28	4	12.50	-	-	-
KRTAP5-4	0	genome.wustl.edu	37	11	1642989	1642989	+	Missense_Mutation	SNP	C	C	A			TCGA-E9-A245-01A-22D-A16D-09	TCGA-E9-A245-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bdd591f9-21d1-4ce5-bfde-30e7ac3d440a	5238df31-1273-4814-98cc-e8f1c180ee3d	11	1642989	1642989	C	A	SNP	KRTAP5-4	ENST00000399682	human	ensembl	69_37n	-1	known	missense	c.335	p.G112V	1.000	NULL	NULL	-	no_errors	KRTAP5-4	HGNC	ENSG00000241598	39	0	0.00	43	11	20.37	-	-	-
MUC5B	0	genome.wustl.edu	37	11	1261520	1261520	+	Silent	SNP	C	C	A			TCGA-E9-A245-01A-22D-A16D-09	TCGA-E9-A245-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bdd591f9-21d1-4ce5-bfde-30e7ac3d440a	5238df31-1273-4814-98cc-e8f1c180ee3d	11	1261520	1261520	C	A	SNP	MUC5B	ENST00000447027	human	ensembl	69_37n	+1	known	silent	c.3894	p.I1298	0.007	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC5B	HGNC	ENSG00000117983	16	0	0.00	10	6	37.50	-	-	-
N4BP1	0	genome.wustl.edu	37	16	48596338	48596338	+	Silent	SNP	G	G	T			TCGA-E9-A245-01A-22D-A16D-09	TCGA-E9-A245-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bdd591f9-21d1-4ce5-bfde-30e7ac3d440a	5238df31-1273-4814-98cc-e8f1c180ee3d	16	48596338	48596338	G	T	SNP	N4BP1	ENST00000262384	human	ensembl	69_37n	-1	known	silent	c.216	p.I72	1.000	NULL	pfam_RNase_Zc3h12	-	no_errors	N4BP1	HGNC	ENSG00000102921	35	0	0.00	26	4	13.33	-	-	-
PIP5K1B	0	genome.wustl.edu	37	9	71509406	71509406	+	Missense_Mutation	SNP	C	C	T			TCGA-E9-A245-01A-22D-A16D-09	TCGA-E9-A245-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bdd591f9-21d1-4ce5-bfde-30e7ac3d440a	5238df31-1273-4814-98cc-e8f1c180ee3d	9	71509406	71509406	C	T	SNP	PIP5K1B	ENST00000478500	human	ensembl	69_37n	+1	known	missense	c.743	p.T248M	0.996	pfam_PInositol-4-P-5-kinase_core,smart_PInositol-4P-5-kinase_core_sub	pfam_PInositol-4-P-5-kinase_core,smart_PInositol-4P-5-kinase_core_sub	-	no_errors	PIP5K1B	HGNC	ENSG00000107242	37	0	0.00	10	7	41.18	-	-	-
SP3	0	genome.wustl.edu	37	2	174777831	174777831	+	Missense_Mutation	SNP	C	C	A			TCGA-E9-A245-01A-22D-A16D-09	TCGA-E9-A245-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bdd591f9-21d1-4ce5-bfde-30e7ac3d440a	5238df31-1273-4814-98cc-e8f1c180ee3d	2	174777831	174777831	C	A	SNP	SP3	ENST00000310015	human	ensembl	69_37n	-1	known	missense	c.1996	p.D666Y	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,superfamily_Galactose-bd-like,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SP3	HGNC	ENSG00000172845	88	0	0.00	57	10	14.93	-	-	-
TMEM251	0	genome.wustl.edu	37	14	93652791	93652791	+	Silent	SNP	C	C	T			TCGA-E9-A245-01A-22D-A16D-09	TCGA-E9-A245-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bdd591f9-21d1-4ce5-bfde-30e7ac3d440a	5238df31-1273-4814-98cc-e8f1c180ee3d	14	93652791	93652791	C	T	SNP	TMEM251	ENST00000415050	human	ensembl	69_37n	+1	known	silent	c.285	p.H95	1.000	NULL	NULL	-	no_errors	TMEM251	HGNC	ENSG00000153485	173	0	0.00	92	15	14.02	-	-	-
VPS13D	0	genome.wustl.edu	37	1	12409220	12409220	+	Splice_Site	SNP	G	G	A			TCGA-E9-A245-01A-22D-A16D-09	TCGA-E9-A245-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bdd591f9-21d1-4ce5-bfde-30e7ac3d440a	5238df31-1273-4814-98cc-e8f1c180ee3d	1	12409220	12409220	G	A	SNP	VPS13D	ENST00000358136	human	ensembl	69_37n	+1	known	splice_site	c.9221-1	e45-1	1.000	-	-	-	no_errors	VPS13D	HGNC	ENSG00000048707	48	0	0.00	32	18	35.29	-	-	-
ZC3H12A	0	genome.wustl.edu	37	1	37948869	37948869	+	Missense_Mutation	SNP	C	C	G			TCGA-E9-A245-01A-22D-A16D-09	TCGA-E9-A245-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bdd591f9-21d1-4ce5-bfde-30e7ac3d440a	5238df31-1273-4814-98cc-e8f1c180ee3d	1	37948869	37948869	C	G	SNP	ZC3H12A	ENST00000373082	human	ensembl	69_37n	+1	known	missense	c.1457	p.A486G	0.028	NULL	pfam_RNase_Zc3h12	-	no_errors	ZC3H12A	HGNC	ENSG00000163874	15	0	0.00	7	7	50.00	-	-	-
