Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
ABCA9	0	genome.wustl.edu	37	17	66987049	66987049	+	Missense_Mutation	SNP	C	C	T			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	17	66987049	66987049	C	T	SNP	ABCA9	ENST00000340001	human	ensembl	69_37n	-1	known	missense	c.3766	p.G1256R	0.989	NULL	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA9	HGNC	ENSG00000154258	219	0	0.00	188	70	27.13	-	-	-
ABCD3	0	genome.wustl.edu	37	1	94955532	94955532	+	Splice_Site	SNP	G	G	C			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	1	94955532	94955532	G	C	SNP	ABCD3	ENST00000454898	human	ensembl	69_37n	+1	known	splice_site	c.1394+1	e16+1	1.000	-	-	-	no_errors	ABCD3	HGNC	ENSG00000117528	69	0	0.00	61	10	14.08	-	-	-
ABCG1	0	genome.wustl.edu	37	21	43714747	43714747	+	Missense_Mutation	SNP	G	G	C			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	21	43714747	43714747	G	C	SNP	ABCG1	ENST00000398437	human	ensembl	69_37n	+1	known	missense	c.2223	p.W741C	1.000	pfam_ABC_2_trans,tigrfam_Pigment_permease	pfam_ABC_2_trans,pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like,tigrfam_Pigment_permease	-	no_errors	ABCG1	HGNC	ENSG00000160179	131	0	0.00	138	20	12.66	-	-	-
ADAMTS18	0	genome.wustl.edu	37	16	77398163	77398163	+	Silent	SNP	G	G	A			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	16	77398163	77398163	G	A	SNP	ADAMTS18	ENST00000282849	human	ensembl	69_37n	-1	known	silent	c.894	p.L298	0.011	pfam_Peptidase_M12B,pfscan_Peptidase_M12B	pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS18	HGNC	ENSG00000140873	179	0	0.00	168	21	11.11	-	-	-
ALS2	0	genome.wustl.edu	37	2	202571627	202571627	+	Missense_Mutation	SNP	C	C	T			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	2	202571627	202571627	C	T	SNP	ALS2	ENST00000264276	human	ensembl	69_37n	-1	known	missense	c.4522	p.V1508I	1.000	NULL	pfam_Reg_chr_condens,pfam_MORN,pfam_VPS9,pfam_DH-domain,superfamily_Reg_csome_cond/b-lactamase_inh,superfamily_DH-domain,smart_MORN,prints_Reg_chr_condens,pfscan_VPS9,pfscan_Reg_chr_condens,pfscan_DH-domain	-	no_errors	ALS2	HGNC	ENSG00000003393	59	0	0.00	83	14	14.29	-	-	-
ANKAR	0	genome.wustl.edu	37	2	190559825	190559825	+	Missense_Mutation	SNP	G	G	A			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	2	190559825	190559825	G	A	SNP	ANKAR	ENST00000313581	human	ensembl	69_37n	+1	known	missense	c.1426	p.D476N	1.000	NULL	pfam_Armadillo,superfamily_ARM-type_fold,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Armadillo,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Armadillo	-	no_errors	ANKAR	HGNC	ENSG00000151687	97	0	0.00	106	20	15.87	-	-	-
ARHGAP26	0	genome.wustl.edu	37	5	142283104	142283104	+	Splice_Site	SNP	G	G	T			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	5	142283104	142283104	G	T	SNP	ARHGAP26	ENST00000274498	human	ensembl	69_37n	+1	known	splice_site	c.703-1	e8-1	1.000	-	-	-	no_errors	ARHGAP26	HGNC	ENSG00000145819	34	0	0.00	16	7	30.43	-	-	-
ASAP3	0	genome.wustl.edu	37	1	23763508	23763508	+	Missense_Mutation	SNP	C	C	A			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	1	23763508	23763508	C	A	SNP	ASAP3	ENST00000336689	human	ensembl	69_37n	-1	known	missense	c.1372	p.V458L	1.000	pfam_ArfGAP,superfamily_ArfGAP,smart_ArfGAP,prints_ArfGAP,pfscan_ArfGAP	pfam_ArfGAP,pfam_Pleckstrin_homology,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,superfamily_ArfGAP,smart_Pleckstrin_homology,smart_ArfGAP,smart_Ankyrin_rpt,prints_ArfGAP,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_ArfGAP	-	no_errors	ASAP3	HGNC	ENSG00000088280	14	0	0.00	18	11	37.93	-	-	-
ASCC3	0	genome.wustl.edu	37	6	101109699	101109699	+	Missense_Mutation	SNP	C	C	G			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	6	101109699	101109699	C	G	SNP	ASCC3	ENST00000369162	human	ensembl	69_37n	-1	known	missense	c.2686	p.D896H	1.000	pfscan_Helicase_C	pfam_Sec63-dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase/UvrB_dom,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_AAA+_ATPase,smart_Helicase_C,smart_Sec63-dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ASCC3	HGNC	ENSG00000112249	123	0	0.00	179	21	10.50	-	-	-
ATF1	0	genome.wustl.edu	37	12	51208091	51208091	+	Missense_Mutation	SNP	G	G	C			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	12	51208091	51208091	G	C	SNP	ATF1	ENST00000262053	human	ensembl	69_37n	+1	known	missense	c.540	p.Q180H	1.000	prints_Leuzip_CREB	pfam_bZIP_1,pfam_Coactivator_CBP_pKID,pfam_bZIP_2,smart_bZIP,pfscan_Coactivator_CBP_pKID,pfscan_bZIP,prints_Leuzip_CREB	-	no_errors	ATF1	HGNC	ENSG00000123268	94	0	0.00	83	11	11.70	-	-	-
ATG9A	0	genome.wustl.edu	37	2	220088405	220088405	+	Missense_Mutation	SNP	T	T	G			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	2	220088405	220088405	T	G	SNP	ATG9A	ENST00000361242	human	ensembl	69_37n	-1	known	missense	c.1501	p.I501L	1.000	pfam_Autophagy-rel_prot_9	pfam_Autophagy-rel_prot_9,superfamily_Cyt_c_oxidase_su3	-	no_errors	ATG9A	HGNC	ENSG00000198925	44	0	0.00	57	20	25.97	-	-	-
BBX	0	genome.wustl.edu	37	3	107492012	107492012	+	Missense_Mutation	SNP	G	G	T			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	3	107492012	107492012	G	T	SNP	BBX	ENST00000325805	human	ensembl	69_37n	+1	known	missense	c.1444	p.D482Y	1.000	NULL	pfam_TF_HMG_box_BBX_DUF2028,pfam_HMG_superfamily,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily	-	no_errors	BBX	HGNC	ENSG00000114439	31	0	0.00	18	9	33.33	-	-	-
C14orf159	0	genome.wustl.edu	37	14	91671099	91671099	+	Missense_Mutation	SNP	T	T	C			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	14	91671099	91671099	T	C	SNP	C14orf159	ENST00000523461	human	ensembl	69_37n	+1	known	missense	c.1448	p.L483P	0.731	pirsf_UPF0317_mt	pfam_DUF1445,pirsf_UPF0317_mt	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	C14orf159	HGNC	ENSG00000133943	147	0	0.00	134	17	11.26	-	-	-
C1orf31	0	genome.wustl.edu	37	1	234510115	234510115	+	Missense_Mutation	SNP	T	T	A			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	1	234510115	234510115	T	A	SNP	C1orf31	ENST00000366615	human	ensembl	69_37n	+1	known	missense	c.352	p.S118T	0.972	pfam_Cyt_c_oxidase_su6B,superfamily_Cyt_c_oxidase_su6B	pfam_Cyt_c_oxidase_su6B,superfamily_Cyt_c_oxidase_su6B	-	no_errors	C1orf31	HGNC	ENSG00000168275	83	0	0.00	76	9	10.59	-	-	-
C2orf40	0	genome.wustl.edu	37	2	106694341	106694341	+	Missense_Mutation	SNP	G	G	T			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	2	106694341	106694341	G	T	SNP	C2orf40	ENST00000238044	human	ensembl	69_37n	+1	known	missense	c.406	p.G136C	0.132	NULL	NULL	-	no_errors	C2orf40	HGNC	ENSG00000119147	82	0	0.00	57	41	41.84	-	-	-
C7orf61	0	genome.wustl.edu	37	7	100061589	100061589	+	Silent	SNP	G	G	A			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	7	100061589	100061589	G	A	SNP	C7orf61	ENST00000332375	human	ensembl	69_37n	-1	known	silent	c.60	p.S20	0.269	NULL	NULL	-	no_errors	C7orf61	HGNC	ENSG00000185955	78	0	0.00	79	10	11.24	-	-	-
CARD11	0	genome.wustl.edu	37	7	2954887	2954887	+	Missense_Mutation	SNP	C	C	G			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	7	2954887	2954887	C	G	SNP	CARD11	ENST00000396946	human	ensembl	69_37n	-1	known	missense	c.2823	p.L941F	0.170	NULL	pfam_CARD,superfamily_DEATH-like,superfamily_PDZ,pfscan_CARD	-	no_errors	CARD11	HGNC	ENSG00000198286	83	0	0.00	67	8	10.67	-	-	-
CCBP2	0	genome.wustl.edu	37	3	42906469	42906469	+	Missense_Mutation	SNP	G	G	C			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	3	42906469	42906469	G	C	SNP	CCBP2	ENST00000273145	human	ensembl	69_37n	+1	known	missense	c.475	p.A159P	0.024	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_Chemokine_rcpt,prints_ATII_rcpt,prints_Chemokine_CXCR4	-	no_errors	CCBP2	HGNC	ENSG00000144648	68	0	0.00	46	13	22.03	-	-	-
CCDC88A	0	genome.wustl.edu	37	2	55562132	55562132	+	Missense_Mutation	SNP	C	C	G			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	2	55562132	55562132	C	G	SNP	CCDC88A	ENST00000436346	human	ensembl	69_37n	-1	known	missense	c.1825	p.E609Q	1.000	NULL	pfam_HOOK,superfamily_Prefoldin,superfamily_t-SNARE	-	no_errors	CCDC88A	HGNC	ENSG00000115355	109	0	0.00	89	19	17.59	-	-	-
CD1E	0	genome.wustl.edu	37	1	158325222	158325222	+	Missense_Mutation	SNP	T	T	A			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	1	158325222	158325222	T	A	SNP	CD1E	ENST00000368167	human	ensembl	69_37n	+1	known	missense	c.488	p.I163N	0.026	superfamily_MHC_I/II-like_Ag-recog	pfam_Ig_C1-set,superfamily_MHC_I/II-like_Ag-recog,smart_Ig_C1-set,pfscan_Ig-like	-	no_errors	CD1E	HGNC	ENSG00000158488	54	0	0.00	85	23	21.30	-	-	-
CENPE	0	genome.wustl.edu	37	4	104066766	104066766	+	Silent	SNP	A	A	G			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	4	104066766	104066766	A	G	SNP	CENPE	ENST00000265148	human	ensembl	69_37n	-1	known	silent	c.4486	p.L1496	0.007	superfamily_Signal_recog_particl_SRP54_hlx	pfam_Kinesin_motor_dom,superfamily_STAT_TF_coiled-coil,superfamily_Signal_recog_particl_SRP54_hlx,smart_Kinesin_motor_dom,prints_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	-	no_errors	CENPE	HGNC	ENSG00000138778	218	0	0.00	92	57	38.26	-	-	-
CHEK2P2	0	genome.wustl.edu	37	15	20490520	20490520	+	RNA	SNP	G	G	T			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	15	20490520	20490520	G	T	SNP	CHEK2P2	ENST00000555186	human	ensembl	69_37n	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	CHEK2P2	HGNC	ENSG00000259156	11	0	0.00	10	5	33.33	-	-	-
CLDN10	0	genome.wustl.edu	37	13	96086130	96086130	+	Missense_Mutation	SNP	G	G	A			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	13	96086130	96086130	G	A	SNP	CLDN10	ENST00000376873	human	ensembl	69_37n	+1	known	missense	c.43	p.G15R	1.000	pfam_PMP22/EMP/MP20/Claudin	pfam_PMP22/EMP/MP20/Claudin,prints_Claudin,prints_Claudin10	-	no_errors	CLDN10	HGNC	ENSG00000134873	122	0	0.00	71	26	26.80	-	-	-
COL1A2	0	genome.wustl.edu	37	7	94053655	94053655	+	Missense_Mutation	SNP	C	C	T			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	7	94053655	94053655	C	T	SNP	COL1A2	ENST00000297268	human	ensembl	69_37n	+1	known	missense	c.2573	p.P858L	1.000	NULL	pfam_Collagen,pfam_Fib_collagen_C,superfamily_Fibrinogen_a/b/g_C,smart_Fib_collagen_C	-	no_errors	COL1A2	HGNC	ENSG00000164692	156	0	0.00	174	23	11.68	-	-	-
COPE	0	genome.wustl.edu	37	19	19010527	19010528	+	Frame_Shift_Ins	INS	-	-	T			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	19	19010527	19010528	-	T	INS	COPE	ENST00000262812	human	ensembl	69_37n	-1	known	frame_shift_ins	c.888_887	p.D296fs	0.999:1.000	pfam_Coatomer_esu,pirsf_Coatomer_esu	pfam_Coatomer_esu,pirsf_Coatomer_esu	-	no_errors	COPE	HGNC	ENSG00000105669	76	0	0.00	54	23	29.87	-	-	-
CYP27B1	0	genome.wustl.edu	37	12	58157933	58157933	+	Missense_Mutation	SNP	G	G	A			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	12	58157933	58157933	G	A	SNP	CYP27B1	ENST00000228606	human	ensembl	69_37n	-1	known	missense	c.1163	p.S388F	1.000	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_B	-	no_errors	CYP27B1	HGNC	ENSG00000111012	58	0	0.00	47	8	14.55	-	-	-
DST	0	genome.wustl.edu	37	6	56468688	56468688	+	Missense_Mutation	SNP	C	C	T			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	6	56468688	56468688	C	T	SNP	DST	ENST00000370754	human	ensembl	69_37n	-1	known	missense	c.10639	p.E3547K	0.048	superfamily_ABC_transptrTM_dom_typ1	pfam_Spectrin_repeat,pfam_Plectin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,superfamily_ABC_transptrTM_dom_typ1,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,smart_EF_hand_Ca-bd,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_HAND_2	-	no_errors	DST	HGNC	ENSG00000151914	82	0	0.00	97	16	14.16	-	-	-
DUOX2	0	genome.wustl.edu	37	15	45392998	45392998	+	Missense_Mutation	SNP	G	G	T			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	15	45392998	45392998	G	T	SNP	DUOX2	ENST00000389039	human	ensembl	69_37n	-1	known	missense	c.2960	p.A987D	0.012	NULL	pfam_Haem_peroxidase_animal,pfam_Fe_red_NAD-bd_6,pfam_FAD-bd_8,pfam_Fe3_Rdtase_TM_dom,pfam_EF-hand,superfamily_Haem_peroxidase,superfamily_Riboflavin_synthase-like_b-brl,smart_EF_hand_Ca-bd,prints_Haem_peroxidase_animal_subgr,prints_Recoverin,pfscan_EF_HAND_2,pfscan_Haem_peroxidase_animal	-	no_errors	DUOX2	HGNC	ENSG00000140279	119	0	0.00	73	27	27.00	-	-	-
ELFN1	0	genome.wustl.edu	37	7	1786622	1786622	+	Missense_Mutation	SNP	G	G	A			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	7	1786622	1786622	G	A	SNP	ELFN1	ENST00000424383	human	ensembl	69_37n	+1	known	missense	c.2390	p.G797D	1.000	NULL	superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	ELFN1	HGNC	ENSG00000225968	37	0	0.00	31	11	26.19	-	-	-
ELFN1	0	genome.wustl.edu	37	7	1786623	1786623	+	Silent	SNP	C	C	A			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	7	1786623	1786623	C	A	SNP	ELFN1	ENST00000424383	human	ensembl	69_37n	+1	known	silent	c.2391	p.G797	1.000	NULL	superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	ELFN1	HGNC	ENSG00000225968	36	0	0.00	31	11	26.19	-	-	-
ELTD1	0	genome.wustl.edu	37	1	79403528	79403528	+	Nonsense_Mutation	SNP	T	T	A			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	1	79403528	79403528	T	A	SNP	ELTD1	ENST00000370742	human	ensembl	69_37n	-1	known	nonsense	c.724	p.K242*	1.000	pfam_DUF3497	pfam_GPCR_2_secretin-like,pfam_DUF3497,pfam_GPS_dom,pfam_EGF-like_Ca-bd,smart_EGF-like,smart_EGF-like_Ca-bd,smart_GPS_dom,pfscan_EG-like_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	ELTD1	HGNC	ENSG00000162618	112	0	0.00	87	40	31.50	-	-	-
EPHB1	0	genome.wustl.edu	37	3	134911476	134911476	+	Silent	SNP	C	C	T			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	3	134911476	134911476	C	T	SNP	EPHB1	ENST00000398015	human	ensembl	69_37n	+1	known	silent	c.1941	p.Y647	0.041	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_cat_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_cat_dom	-	no_errors	EPHB1	HGNC	ENSG00000154928	84	0	0.00	82	28	25.45	-	-	-
FADS2	0	genome.wustl.edu	37	11	61630536	61630536	+	Missense_Mutation	SNP	C	C	A			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	11	61630536	61630536	C	A	SNP	FADS2	ENST00000278840	human	ensembl	69_37n	+1	known	missense	c.975	p.F325L	0.998	pfam_Fatty_acid_desaturase-1,pirsf_Fatty_acid/sphinglp_desaturase	pfam_Fatty_acid_desaturase-1,pfam_Cyt_B5,superfamily_Cyt_B5,pirsf_Fatty_acid/sphinglp_desaturase,pfscan_Cyt_B5	-	no_errors	FADS2	HGNC	ENSG00000134824	168	0	0.00	153	18	10.53	-	-	-
FAM122B	0	genome.wustl.edu	37	X	133906240	133906240	+	Missense_Mutation	SNP	C	C	T			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	X	133906240	133906240	C	T	SNP	FAM122B	ENST00000343004	human	ensembl	69_37n	-1	known	missense	c.730	p.A244T	0.986	NULL	NULL	-	no_errors	FAM122B	HGNC	ENSG00000156504	65	0	0.00	108	16	12.90	-	-	-
FAM123C	0	genome.wustl.edu	37	2	131520463	131520463	+	Missense_Mutation	SNP	C	C	T			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	2	131520463	131520463	C	T	SNP	FAM123C	ENST00000321420	human	ensembl	69_37n	+1	known	missense	c.818	p.T273I	0.003	pfam_Uncharacterised_FAM123	pfam_Uncharacterised_FAM123	-	no_errors	FAM123C	HGNC	ENSG00000178171	24	0	0.00	26	11	28.95	-	-	-
FAM179A	0	genome.wustl.edu	37	2	29240092	29240092	+	Missense_Mutation	SNP	C	C	T			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	2	29240092	29240092	C	T	SNP	FAM179A	ENST00000379558	human	ensembl	69_37n	+1	known	missense	c.1117	p.R373W	0.000	NULL	pfam_CLASP_N_dom,superfamily_ARM-type_fold	-	no_errors	FAM179A	HGNC	ENSG00000189350	36	0	0.00	69	15	17.86	-	-	-
FAM222B	0	genome.wustl.edu	37	17	27086539	27086539	+	Missense_Mutation	SNP	G	G	C			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	17	27086539	27086539	G	C	SNP	FAM222B	ENST00000341217	human	ensembl	69_37n	-1	known	missense	c.438	p.H146Q	1.000	NULL	NULL	-	no_errors	FAM222B	HGNC	ENSG00000173065	40	0	0.00	37	15	28.85	-	-	-
FAM75D3	0	genome.wustl.edu	37	9	84562587	84562587	+	RNA	SNP	A	A	G			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	9	84562587	84562587	A	G	SNP	FAM75D3	ENST00000334208	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	FAM75D3	HGNC	ENSG00000186788	71	0	0.00	92	12	11.54	-	-	-
FBN2	0	genome.wustl.edu	37	5	127681110	127681110	+	Silent	SNP	G	G	A			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	5	127681110	127681110	G	A	SNP	FBN2	ENST00000262464	human	ensembl	69_37n	-1	known	silent	c.3156	p.C1052	1.000	pirsf_Fibrillin,superfamily_TB_dom	pirsf_Fibrillin,pfam_EGF-like_Ca-bd,pfam_EGF-like_dom,pfam_TB_dom,superfamily_TB_dom,superfamily_Cadherin-like,smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_EG-like_dom	-	no_errors	FBN2	HGNC	ENSG00000138829	43	0	0.00	35	9	20.45	-	-	-
FER	0	genome.wustl.edu	37	5	108521904	108521904	+	Missense_Mutation	SNP	G	G	A			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	5	108521904	108521904	G	A	SNP	FER	ENST00000281092	human	ensembl	69_37n	+1	known	missense	c.2207	p.R736K	1.000	pirsf_Tyr_kinase_non-rcpt_Fes_subgr,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pirsf_Tyr_kinase_non-rcpt_Fes_subgr,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_SH2,pfam_FCH,superfamily_Kinase-like_dom,smart_FCH,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_FCH,pfscan_SH2,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2	-	no_errors	FER	HGNC	ENSG00000151422	182	0	0.00	130	35	21.21	-	-	-
FLJ12825	0	genome.wustl.edu	37	12	54514529	54514529	+	RNA	SNP	G	G	T			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	12	54514529	54514529	G	T	SNP	FLJ12825	ENST00000515617	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	RP11-834C11.3	Clone_based_vega_gene	ENSG00000248265	8	0	0.00	7	5	41.67	-	-	-
FMNL3	0	genome.wustl.edu	37	12	50044490	50044490	+	Missense_Mutation	SNP	A	A	C			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	12	50044490	50044490	A	C	SNP	FMNL3	ENST00000293590	human	ensembl	69_37n	-1	known	missense	c.1969	p.S657A	1.000	pfam_FH2_actin-bd,superfamily_FH2_actin-bd,smart_Actin-bd_FH2/DRF_autoreg	pfam_FH2_actin-bd,pfam_Drf_FH3,pfam_Drf_GTPase-bd,superfamily_FH2_actin-bd,superfamily_ARM-type_fold,smart_Actin-bd_FH2/DRF_autoreg	-	no_errors	FMNL3	HGNC	ENSG00000161791	152	1	0.65	167	34	16.92	-	-	-
GRIA3	0	genome.wustl.edu	37	X	122528859	122528859	+	Missense_Mutation	SNP	G	G	A			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	X	122528859	122528859	G	A	SNP	GRIA3	ENST00000264357	human	ensembl	69_37n	+1	known	missense	c.791	p.G264E	1.000	pfam_ANF_lig-bd_rcpt	pfam_Iontro_glu_rcpt,pfam_ANF_lig-bd_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIA3	HGNC	ENSG00000125675	98	0	0.00	97	17	14.91	-	-	-
HHATL	0	genome.wustl.edu	37	3	42739047	42739047	+	Missense_Mutation	SNP	A	A	T			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	3	42739047	42739047	A	T	SNP	HHATL	ENST00000310417	human	ensembl	69_37n	-1	known	missense	c.818	p.I273N	1.000	pfam_MBOAT_fam	pfam_MBOAT_fam	-	no_errors	HHATL	HGNC	ENSG00000010282	98	0	0.00	61	11	15.07	-	-	-
HMCN1	0	genome.wustl.edu	37	1	185902681	185902681	+	Missense_Mutation	SNP	A	A	T			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	1	185902681	185902681	A	T	SNP	HMCN1	ENST00000271588	human	ensembl	69_37n	+1	known	missense	c.1553	p.E518V	1.000	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_G2_nidogen/fibulin_G2F,pfam_EGF-like_Ca-bd,pfam_Thrombospondin_1_rpt,superfamily_Green_fluorescent_prot-like,superfamily_Thrombospondin_1_rpt,superfamily_Growth_fac_rcpt,superfamily_Cadherin-like,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Thrombospondin_1_rpt,smart_G2_nidogen/fibulin_G2F,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like	-	no_errors	HMCN1	HGNC	ENSG00000143341	113	0	0.00	149	23	13.29	-	-	-
HOXC4	0	genome.wustl.edu	37	12	54448714	54448714	+	Missense_Mutation	SNP	G	G	C			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	12	54448714	54448714	G	C	SNP	HOXC4	ENST00000303406	human	ensembl	69_37n	+1	known	missense	c.520	p.E174Q	1.000	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_Homeobox_metazoa,prints_Homeobox_antennapedia	-	no_errors	HOXC4	HGNC	ENSG00000198353	30	0	0.00	29	6	17.14	-	-	-
IFNA5	0	genome.wustl.edu	37	9	21304986	21304986	+	Silent	SNP	G	G	C			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	9	21304986	21304986	G	C	SNP	IFNA5	ENST00000259555	human	ensembl	69_37n	-1	known	silent	c.270	p.L90	0.631	pfam_Interferon_alpha/beta/delta,superfamily_4_helix_cytokine-like_core,smart_Interferon_alpha/beta/delta,prints_Interferon_alpha/beta/delta	pfam_Interferon_alpha/beta/delta,superfamily_4_helix_cytokine-like_core,smart_Interferon_alpha/beta/delta,prints_Interferon_alpha/beta/delta	-	no_errors	IFNA5	HGNC	ENSG00000147873	197	0	0.00	132	19	12.50	-	-	-
IMPG2	0	genome.wustl.edu	37	3	100962731	100962731	+	Missense_Mutation	SNP	G	G	C			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	3	100962731	100962731	G	C	SNP	IMPG2	ENST00000193391	human	ensembl	69_37n	-1	known	missense	c.2444	p.S815C	0.997	NULL	pfam_SEA,smart_SEA,pfscan_EG-like_dom,pfscan_SEA	-	no_errors	IMPG2	HGNC	ENSG00000081148	50	0	0.00	66	9	12.00	-	-	-
ITPKC	0	genome.wustl.edu	37	19	41245449	41245449	+	Missense_Mutation	SNP	G	G	C			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	19	41245449	41245449	G	C	SNP	ITPKC	ENST00000263370	human	ensembl	69_37n	+1	known	missense	c.2036	p.G679A	0.906	NULL	pfam_IPK	-	no_errors	ITPKC	HGNC	ENSG00000086544	27	0	0.00	19	9	32.14	-	-	-
JMJD1C	0	genome.wustl.edu	37	10	64967194	64967194	+	Missense_Mutation	SNP	C	C	A			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	10	64967194	64967194	C	A	SNP	JMJD1C	ENST00000399262	human	ensembl	69_37n	-1	known	missense	c.4235	p.G1412V	0.761	NULL	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	-	no_errors	JMJD1C	HGNC	ENSG00000171988	64	0	0.00	57	28	32.94	-	-	-
KAT6B	0	genome.wustl.edu	37	10	76735226	76735226	+	Missense_Mutation	SNP	G	G	C			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	10	76735226	76735226	G	C	SNP	KAT6B	ENST00000287239	human	ensembl	69_37n	+1	known	missense	c.1131	p.K377N	1.000	NULL	pfam_MOZ_SAS,pfam_Znf_PHD-finger,pfam_Histone_H1/H5,superfamily_Acyl_CoA_acyltransferase,superfamily_Znf_FYVE_PHD,smart_Histone_H1/H5,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	KAT6B	HGNC	ENSG00000156650	82	0	0.00	99	16	13.91	-	-	-
KATNAL1	0	genome.wustl.edu	37	13	30782679	30782679	+	Nonstop_Mutation	SNP	A	A	C			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	13	30782679	30782679	A	C	SNP	KATNAL1	ENST00000380615	human	ensembl	69_37n	-1	known	nonstop	c.1471	p.*491G	1.000	NULL	pfam_ATPase_AAA_core,pfam_Vps4_C,pfam_DNA_helicase_Holl-junc_RuvB_N,pfam_ATPase_AAA-2,smart_AAA+_ATPase	-	no_errors	KATNAL1	HGNC	ENSG00000102781	58	0	0.00	44	10	18.52	-	-	-
KIAA0284	0	genome.wustl.edu	37	14	105359435	105359435	+	Missense_Mutation	SNP	C	C	T			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	14	105359435	105359435	C	T	SNP	KIAA0284	ENST00000453495	human	ensembl	69_37n	+1	known	missense	c.4109	p.P1370L	1.000	NULL	pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,pfscan_FHA_dom	-	no_errors	KIAA0284	HGNC	ENSG00000099814	18	0	0.00	17	6	26.09	-	-	-
LIMCH1	0	genome.wustl.edu	37	4	41615638	41615638	+	Missense_Mutation	SNP	G	G	C			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	4	41615638	41615638	G	C	SNP	LIMCH1	ENST00000503057	human	ensembl	69_37n	+1	known	missense	c.165	p.Q55H	1.000	NULL	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	LIMCH1	HGNC	ENSG00000064042	61	0	0.00	48	7	12.73	-	-	-
LPCAT2	0	genome.wustl.edu	37	16	55579724	55579724	+	Missense_Mutation	SNP	G	G	T			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	16	55579724	55579724	G	T	SNP	LPCAT2	ENST00000262134	human	ensembl	69_37n	+1	known	missense	c.930	p.M310I	1.000	NULL	pfam_EF-hand,pfam_Acyltransferase,smart_Acyltransferase,smart_EF_hand_Ca-bd,prints_Recoverin,pfscan_EF_HAND_2	-	no_errors	LPCAT2	HGNC	ENSG00000087253	108	0	0.00	64	35	35.35	-	-	-
LRP8	0	genome.wustl.edu	37	1	53736931	53736931	+	Missense_Mutation	SNP	C	C	G			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	1	53736931	53736931	C	G	SNP	LRP8	ENST00000306052	human	ensembl	69_37n	-1	known	missense	c.1094	p.G365A	1.000	superfamily_Growth_fac_rcpt,smart_EGF-like_Ca-bd,smart_EGF-like	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EGF-like_Ca-bd,superfamily_Growth_fac_rcpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like,smart_EGF-like_Ca-bd,smart_LDLR_classB_rpt,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP8	HGNC	ENSG00000157193	79	0	0.00	60	10	14.29	-	-	-
MACC1	0	genome.wustl.edu	37	7	20199064	20199064	+	Missense_Mutation	SNP	T	T	G			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	7	20199064	20199064	T	G	SNP	MACC1	ENST00000332878	human	ensembl	69_37n	-1	known	missense	c.920	p.E307A	0.740	NULL	pfam_SH3_2,superfamily_DEATH-like	-	no_errors	MACC1	HGNC	ENSG00000183742	65	0	0.00	34	6	15.00	-	-	-
METAP1D	0	genome.wustl.edu	37	2	172945134	172945134	+	Nonstop_Mutation	SNP	A	A	T			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	2	172945134	172945134	A	T	SNP	METAP1D	ENST00000315796	human	ensembl	69_37n	+1	known	nonstop	c.1008	p.*336C	1.000	NULL	pfam_Pept_M24_structural-domain,superfamily_Pept_M24_structural-domain,prints_Pept_M24_MAP,tigrfam_Pept_M24A_MAP1	-	no_errors	METAP1D	HGNC	ENSG00000172878	62	0	0.00	48	17	26.15	-	-	-
METTL12	0	genome.wustl.edu	37	11	62433975	62433975	+	Nonsense_Mutation	SNP	G	G	T			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	11	62433975	62433975	G	T	SNP	METTL12	ENST00000532971	human	ensembl	69_37n	+1	known	nonsense	c.175	p.E59*	0.609	NULL	pfam_Methyltransf_11	-	no_errors	METTL12	HGNC	ENSG00000214756	33	0	0.00	54	7	11.48	-	-	-
MIR1182	0	genome.wustl.edu	37	1	231155585	231155585	+	RNA	SNP	C	C	A			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	1	231155585	231155585	C	A	SNP	MIR1182	ENST00000408363	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MIR1182	HGNC	ENSG00000221290	47	0	0.00	42	8	16.00	-	-	-
MRVI1	0	genome.wustl.edu	37	11	10626073	10626073	+	Missense_Mutation	SNP	G	G	C			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	11	10626073	10626073	G	C	SNP	MRVI1	ENST00000421747	human	ensembl	69_37n	-1	known	missense	c.1595	p.S532C	1.000	pfam_MRVI1	pfam_MRVI1	-	no_errors	MRVI1	HGNC	ENSG00000072952	234	0	0.00	242	54	18.24	-	-	-
MSANTD2	0	genome.wustl.edu	37	11	124637779	124637779	+	Missense_Mutation	SNP	T	T	G			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	11	124637779	124637779	T	G	SNP	MSANTD2	ENST00000374979	human	ensembl	69_37n	-1	known	missense	c.973	p.K325Q	1.000	NULL	NULL	-	no_errors	MSANTD2	HGNC	ENSG00000120458	66	0	0.00	62	14	18.42	-	-	-
MSL3	0	genome.wustl.edu	37	X	11779630	11779630	+	Missense_Mutation	SNP	T	T	C			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	X	11779630	11779630	T	C	SNP	MSL3	ENST00000312196	human	ensembl	69_37n	+1	known	missense	c.394	p.S132P	0.998	superfamily_Chromodomain-like	pfam_MRG,pfam_Tudor-knot,superfamily_Chromodomain-like,smart_Chromo_domain/shadow	-	no_errors	MSL3	HGNC	ENSG00000005302	141	0	0.00	72	17	19.10	-	-	-
MTSS1	0	genome.wustl.edu	37	8	125577935	125577935	+	Missense_Mutation	SNP	G	G	A			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	8	125577935	125577935	G	A	SNP	MTSS1	ENST00000519168	human	ensembl	69_37n	-1	novel	missense	c.34	p.H12Y	1.000	NULL	pfscan_WH2_dom	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region	MTSS1	HGNC	ENSG00000170873	78	0	0.00	79	17	17.71	-	-	-
MUC16	0	genome.wustl.edu	37	19	9075811	9075811	+	Missense_Mutation	SNP	C	C	G			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	19	9075811	9075811	C	G	SNP	MUC16	ENST00000397910	human	ensembl	69_37n	-1	known	missense	c.11635	p.A3879P	0.000	NULL	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC16	HGNC	ENSG00000181143	156	0	0.00	170	40	19.05	-	-	-
MUC4	0	genome.wustl.edu	37	3	195505713	195505713	+	Silent	SNP	A	A	G			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	3	195505713	195505713	A	G	SNP	MUC4	ENST00000463781	human	ensembl	69_37n	-1	known	silent	c.12738	p.A4246	0.000	NULL	pfam_Nidogen_extracell_dom,pfam_AMOP,pfam_VWF_type-D,smart_Nidogen_extracell_dom,smart_AMOP,smart_VWF_type-D,smart_EGF-like,pfscan_AMOP,pfscan_EG-like_dom	-	no_errors	MUC4	HGNC	ENSG00000145113	237	0	0.00	246	106	30.11	-	-	-
NLGN1	0	genome.wustl.edu	37	3	173998377	173998377	+	Missense_Mutation	SNP	C	C	A			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	3	173998377	173998377	C	A	SNP	NLGN1	ENST00000401917	human	ensembl	69_37n	+1	known	missense	c.1876	p.L626I	1.000	pfam_CarbesteraseB,prints_Neuroligin	pfam_CarbesteraseB,pfam_AB_hydrolase_3,prints_Neuroligin	-	no_errors	NLGN1	HGNC	ENSG00000169760	85	0	0.00	87	10	10.31	-	-	-
OR4D11	0	genome.wustl.edu	37	11	59271565	59271565	+	Missense_Mutation	SNP	G	G	T			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	11	59271565	59271565	G	T	SNP	OR4D11	ENST00000313253	human	ensembl	69_37n	+1	known	missense	c.517	p.V173F	0.013	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR4D11	HGNC	ENSG00000176200	244	2	0.81	205	34	14.23	-	-	-
OR7C2	0	genome.wustl.edu	37	19	15052876	15052876	+	Silent	SNP	C	C	T			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	19	15052876	15052876	C	T	SNP	OR7C2	ENST00000248072	human	ensembl	69_37n	+1	known	silent	c.576	p.T192	0.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR7C2	HGNC	ENSG00000127529	349	1	0.29	244	54	18.12	-	-	-
OTOGL	0	genome.wustl.edu	37	12	80762042	80762042	+	Missense_Mutation	SNP	G	G	C			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	12	80762042	80762042	G	C	SNP	OTOGL	ENST00000458043	human	ensembl	69_37n	+1	known	missense	c.6541	p.V2181L	0.998	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_AbfB,superfamily_AbfB,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_Cys_knot_C,pfscan_Cys_knot_C	-	no_errors	OTOGL	HGNC	ENSG00000165899	170	0	0.00	164	32	16.24	-	-	-
P2RX5	0	genome.wustl.edu	37	17	3593433	3593433	+	Missense_Mutation	SNP	A	A	T			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	17	3593433	3593433	A	T	SNP	P2RX5	ENST00000435558	human	ensembl	69_37n	-1	known	missense	c.545	p.L182Q	0.997	pfam_P2X_purnocptor,tigrfam_P2X_purnocptor	pfam_P2X_purnocptor,prints_P2X_purnocptor,prints_P2X5_purnocptor,tigrfam_P2X_purnocptor	-	no_errors	P2RX5	HGNC	ENSG00000083454	124	0	0.00	83	12	12.63	-	-	-
PALB2	0	genome.wustl.edu	37	16	23634375	23634375	+	Missense_Mutation	SNP	C	C	G			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	16	23634375	23634375	C	G	SNP	PALB2	ENST00000261584	human	ensembl	69_37n	-1	known	missense	c.2911	p.G971R	1.000	superfamily_WD40_repeat_dom	superfamily_WD40_repeat_dom	-	no_errors	PALB2	HGNC	ENSG00000083093	146	0	0.00	136	19	12.18	-	-	-
PCDH19	0	genome.wustl.edu	37	X	99663461	99663461	+	Silent	SNP	G	G	A			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	X	99663461	99663461	G	A	SNP	PCDH19	ENST00000373034	human	ensembl	69_37n	-1	known	silent	c.135	p.D45	1.000	pfam_Cadherin_N,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH19	HGNC	ENSG00000165194	19	0	0.00	9	8	47.06	-	-	-
PDILT	0	genome.wustl.edu	37	16	20370693	20370693	+	Missense_Mutation	SNP	G	G	A			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	16	20370693	20370693	G	A	SNP	PDILT	ENST00000302451	human	ensembl	69_37n	-1	known	missense	c.1703	p.P568L	0.241	NULL	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold	-	no_errors	PDILT	HGNC	ENSG00000169340	113	0	0.00	91	16	14.95	-	-	-
PEAK1	0	genome.wustl.edu	37	15	77471191	77471191	+	Missense_Mutation	SNP	C	C	A			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	15	77471191	77471191	C	A	SNP	PEAK1	ENST00000312493	human	ensembl	69_37n	-1	known	missense	c.3078	p.Q1026H	0.001	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	PEAK1	Clone_based_vega_gene	ENSG00000173517	153	0	0.00	163	39	19.31	-	-	-
PEG3	0	genome.wustl.edu	37	19	57328017	57328017	+	Missense_Mutation	SNP	C	C	T			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	19	57328017	57328017	C	T	SNP	PEG3	ENST00000326441	human	ensembl	69_37n	-1	known	missense	c.1793	p.R598H	0.011	NULL	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	PEG3	HGNC	ENSG00000198300	97	0	0.00	81	13	13.83	-	-	-
PEX5L	0	genome.wustl.edu	37	3	179592153	179592153	+	Missense_Mutation	SNP	C	C	T			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	3	179592153	179592153	C	T	SNP	PEX5L	ENST00000467460	human	ensembl	69_37n	-1	known	missense	c.688	p.E230K	0.998	NULL	pfam_TPR-1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	PEX5L	HGNC	ENSG00000114757	124	1	0.80	200	51	20.32	-	-	-
PHACTR1	0	genome.wustl.edu	37	6	13283809	13283809	+	Silent	SNP	G	G	A			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	6	13283809	13283809	G	A	SNP	PHACTR1	ENST00000379329	human	ensembl	69_37n	+1	known	silent	c.357	p.E119	0.001	NULL	pfam_RPEL_repeat,smart_RPEL_repeat,pfscan_RPEL_repeat	-	no_errors	PHACTR1	HGNC	ENSG00000112137	39	0	0.00	33	6	15.38	-	-	-
PIK3CA	0	genome.wustl.edu	37	3	178936095	178936095	+	Missense_Mutation	SNP	A	A	G			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	3	178936095	178936095	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	+1	known	missense	c.1637	p.Q546R	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	62	0	0.00	104	85	44.97	-	-	-
PIK3CA	0	genome.wustl.edu	37	3	178951964	178951964	+	Missense_Mutation	SNP	G	G	C			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	3	178951964	178951964	G	C	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	+1	known	missense	c.3019	p.G1007R	1.000	pfam_PI3/4_kinase_cat_dom,superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	115	0	0.00	149	43	22.40	-	-	-
PPP2R3A	0	genome.wustl.edu	37	3	135720977	135720977	+	Nonsense_Mutation	SNP	C	C	T			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	3	135720977	135720977	C	T	SNP	PPP2R3A	ENST00000264977	human	ensembl	69_37n	+1	known	nonsense	c.637	p.Q213*	1.000	NULL	pfscan_EF_HAND_2	-	no_errors	PPP2R3A	HGNC	ENSG00000073711	45	0	0.00	52	7	11.86	-	-	-
PRUNE2	0	genome.wustl.edu	37	9	79322731	79322731	+	Nonsense_Mutation	SNP	G	G	A			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	9	79322731	79322731	G	A	SNP	PRUNE2	ENST00000428286	human	ensembl	69_37n	-1	known	nonsense	c.3382	p.R1128*	0.629	NULL	pfam_Bcl2-/adenovirus-E1B,pfam_CRAL-TRIO_dom,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom	-	no_errors	PRUNE2	HGNC	ENSG00000106772	43	0	0.00	29	10	25.00	-	-	-
PTPRB	0	genome.wustl.edu	37	12	70938401	70938401	+	Silent	SNP	C	C	G			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	12	70938401	70938401	C	G	SNP	PTPRB	ENST00000334414	human	ensembl	69_37n	-1	known	silent	c.5430	p.L1810	0.998	superfamily_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Ricin_B_lectin,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRB	HGNC	ENSG00000127329	131	0	0.00	145	24	14.20	-	-	-
RAD54L2	0	genome.wustl.edu	37	3	51664762	51664762	+	Missense_Mutation	SNP	A	A	C			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	3	51664762	51664762	A	C	SNP	RAD54L2	ENST00000409535	human	ensembl	69_37n	+1	known	missense	c.640	p.I214L	1.000	NULL	pfam_SNF2_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	RAD54L2	HGNC	ENSG00000164080	57	0	0.00	67	13	16.25	-	-	-
RNF113A	0	genome.wustl.edu	37	X	119005194	119005194	+	Missense_Mutation	SNP	C	C	T			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	X	119005194	119005194	C	T	SNP	RNF113A	ENST00000371442	human	ensembl	69_37n	-1	known	missense	c.383	p.R128H	0.901	NULL	pfam_Znf_CCCH,smart_Znf_CCCH,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF113A	HGNC	ENSG00000125352	124	0	0.00	96	15	13.39	-	-	-
RNF217	0	genome.wustl.edu	37	6	125379112	125379112	+	Missense_Mutation	SNP	G	G	T			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	6	125379112	125379112	G	T	SNP	RNF217	ENST00000560949	human	ensembl	69_37n	+1	known	missense	c.436	p.V146F	0.835	pfam_Znf_C6HC,smart_Znf_C6HC	pfam_Znf_C6HC,smart_Znf_C6HC	-	no_errors	RNF217	HGNC	ENSG00000146373	156	0	0.00	109	81	42.63	-	-	-
RPS6KC1	0	genome.wustl.edu	37	1	213405469	213405469	+	Missense_Mutation	SNP	C	C	G			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	1	213405469	213405469	C	G	SNP	RPS6KC1	ENST00000366960	human	ensembl	69_37n	+1	known	missense	c.1096	p.L366V	1.000	superfamily_Kinase-like_dom	pfam_Prot_kinase_cat_dom,pfam_MIT,pfam_Phox,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Phox,smart_Phox,smart_MIT,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Phox,pfscan_Prot_kinase_cat_dom	-	no_errors	RPS6KC1	HGNC	ENSG00000136643	120	0	0.00	114	15	11.63	-	-	-
SACS	0	genome.wustl.edu	37	13	23909580	23909580	+	Missense_Mutation	SNP	T	T	G			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	13	23909580	23909580	T	G	SNP	SACS	ENST00000382292	human	ensembl	69_37n	-1	known	missense	c.8435	p.E2812A	1.000	NULL	pfam_HEPN,pfam_Ubiquitin,superfamily_ATPase-like_ATP-bd,superfamily_DnaJ_N,smart_HEPN,pfscan_HEPN,pfscan_DnaJ_N,pfscan_Ubiquitin_supergroup	-	no_errors	SACS	HGNC	ENSG00000151835	105	0	0.00	111	19	14.62	-	-	-
SCAF8	0	genome.wustl.edu	37	6	155124751	155124751	+	Missense_Mutation	SNP	C	C	T			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	6	155124751	155124751	C	T	SNP	SCAF8	ENST00000367186	human	ensembl	69_37n	+1	known	missense	c.1055	p.S352L	1.000	NULL	pfam_RNA_pol_II-bd,pfam_RRM_dom,superfamily_ENTH_VHS,smart_RNA_polymerase_II_lsu_CTD,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	SCAF8	HGNC	ENSG00000213079	137	0	0.00	106	44	29.14	-	-	-
SCN11A	0	genome.wustl.edu	37	3	38889049	38889049	+	Silent	SNP	G	G	C			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	3	38889049	38889049	G	C	SNP	SCN11A	ENST00000302328	human	ensembl	69_37n	-1	known	silent	c.4512	p.L1504	0.996	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_Na_trans_assoc,prints_Na_channel_asu	-	no_errors	SCN11A	HGNC	ENSG00000168356	73	0	0.00	73	11	13.10	-	-	-
SIM1	0	genome.wustl.edu	37	6	100897298	100897298	+	Silent	SNP	G	G	A			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	6	100897298	100897298	G	A	SNP	SIM1	ENST00000262901	human	ensembl	69_37n	-1	known	silent	c.484	p.L162	1.000	NULL	pfam_SIM_C,pfam_PAS_fold_3,pfam_PAS_fold,pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,smart_PAS,smart_PAC,pfscan_PAS,pfscan_HLH_DNA-bd	-	no_errors	SIM1	HGNC	ENSG00000112246	39	0	0.00	23	15	39.47	-	-	-
SLC8A1	0	genome.wustl.edu	37	2	40392055	40392055	+	Missense_Mutation	SNP	C	C	A			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	2	40392055	40392055	C	A	SNP	SLC8A1	ENST00000332839	human	ensembl	69_37n	-1	known	missense	c.2108	p.R703L	1.000	tigrfam_Na_Ca_Ex	pfam_NaCa_Exmemb,pfam_Calx_beta,smart_Calx_beta,pfscan_DnaJ_N,prints_Na_Ca_Ex,prints_NaCa_exhngr1,tigrfam_Na_Ca_Ex	-	no_errors	SLC8A1	HGNC	ENSG00000183023	148	0	0.00	142	56	28.28	-	-	-
SMG1	0	genome.wustl.edu	37	16	18887618	18887618	+	Missense_Mutation	SNP	G	G	C			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	16	18887618	18887618	G	C	SNP	SMG1	ENST00000389467	human	ensembl	69_37n	-1	known	missense	c.1718	p.T573S	1.000	superfamily_ARM-type_fold	pfam_PI3/4_kinase_cat_dom,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	SMG1	HGNC	ENSG00000157106	94	0	0.00	77	23	23.00	-	-	-
SPTA1	0	genome.wustl.edu	37	1	158637828	158637828	+	Missense_Mutation	SNP	C	C	G			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	1	158637828	158637828	C	G	SNP	SPTA1	ENST00000368148	human	ensembl	69_37n	-1	known	missense	c.1858	p.V620L	0.993	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_EF-hand_Ca_insen,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Spectrin/alpha-actinin,smart_SH3_domain,pfscan_EF_HAND_2,pfscan_SH3_domain,prints_Spectrin_alpha_SH3	-	no_errors	SPTA1	HGNC	ENSG00000163554	166	0	0.00	190	32	14.41	-	-	-
SRPK2	0	genome.wustl.edu	37	7	104808475	104808475	+	Missense_Mutation	SNP	C	C	T			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	7	104808475	104808475	C	T	SNP	SRPK2	ENST00000393651	human	ensembl	69_37n	-1	known	missense	c.406	p.E136K	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	SRPK2	HGNC	ENSG00000135250	99	0	0.00	74	19	20.21	-	-	-
TAT	0	genome.wustl.edu	37	16	71604626	71604626	+	Missense_Mutation	SNP	C	C	G			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	16	71604626	71604626	C	G	SNP	TAT	ENST00000355962	human	ensembl	69_37n	-1	known	missense	c.868	p.G290R	1.000	pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase_major_dom,pirsf_Tyrosine_transaminase,tigrfam_Tyrosine_aminoTrfase,tigrfam_TyrNic_aminoTrfase	pfam_Aminotransferase_I/II,pfam_Tyr_aminoTrfase_ubiquitination,pfam_ArAA_b-elim_lyase/Thr_aldolase,pfam_Aminotrans_V/Cys_dSase,pfam_DegT/StrS_aminotransferase,superfamily_PyrdxlP-dep_Trfase_major_dom,pirsf_Tyrosine_transaminase,prints_ACC_synthase,tigrfam_Tyrosine_aminoTrfase,tigrfam_TyrNic_aminoTrfase	-	no_errors	TAT	HGNC	ENSG00000198650	119	0	0.00	104	28	21.21	-	-	-
TCEANC	0	genome.wustl.edu	37	X	13680946	13680946	+	Missense_Mutation	SNP	C	C	G			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	X	13680946	13680946	C	G	SNP	TCEANC	ENST00000314720	human	ensembl	69_37n	+1	known	missense	c.409	p.H137D	0.002	pirsf_TF_IIS-rel	pfam_TFIIS_cen_dom,pfam_TFIIS_N,superfamily_TFIIS_cen_dom,superfamily_TFIIS_N,smart_TFS2M,pirsf_TF_IIS-rel	-	no_errors	TCEANC	HGNC	ENSG00000176896	35	0	0.00	12	6	33.33	-	-	-
TDRD6	0	genome.wustl.edu	37	6	46657345	46657345	+	Missense_Mutation	SNP	G	G	C			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	6	46657345	46657345	G	C	SNP	TDRD6	ENST00000316081	human	ensembl	69_37n	+1	known	missense	c.1480	p.E494Q	1.000	pfam_Tudor	pfam_Tudor,smart_Tudor,pfscan_Tudor	-	no_errors	TDRD6	HGNC	ENSG00000180113	52	0	0.00	76	10	11.63	-	-	-
TELO2	0	genome.wustl.edu	37	16	1555502	1555502	+	Frame_Shift_Del	DEL	T	T	-			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	16	1555502	1555502	T	-	DEL	TELO2	ENST00000262319	human	ensembl	69_37n	+1	known	frame_shift_del	c.1934	p.L645fs	0.000	NULL	pfam_Telomere_length_regulation_dom,superfamily_ARM-type_fold	-	no_errors	TELO2	HGNC	ENSG00000100726	49	0	0.00	33	8	19.05	-	-	-
TESC	0	genome.wustl.edu	37	12	117486929	117486929	+	Missense_Mutation	SNP	C	C	G			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	12	117486929	117486929	C	G	SNP	TESC	ENST00000392545	human	ensembl	69_37n	-1	known	missense	c.403	p.E135Q	1.000	NULL	smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	TESC	HGNC	ENSG00000088992	88	0	0.00	84	18	17.65	-	-	-
TG	0	genome.wustl.edu	37	8	134030036	134030036	+	Missense_Mutation	SNP	C	C	A			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	8	134030036	134030036	C	A	SNP	TG	ENST00000519178	human	ensembl	69_37n	+1	novel	missense	c.1942	p.Q648K	0.000	NULL	pfam_CarbesteraseB,superfamily_Thyroglobulin_1,smart_Thyroglobulin_1,pfscan_Thyroglobulin_1	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	TG	HGNC	ENSG00000042832	55	0	0.00	60	12	16.67	-	-	-
TMED2	0	genome.wustl.edu	37	12	124069325	124069325	+	Missense_Mutation	SNP	G	G	C			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	12	124069325	124069325	G	C	SNP	TMED2	ENST00000262225	human	ensembl	69_37n	+1	known	missense	c.142	p.E48Q	1.000	pfam_GOLD,superfamily_GOLD,pfscan_GOLD	pfam_GOLD,superfamily_GOLD,pfscan_GOLD	-	no_errors	TMED2	HGNC	ENSG00000086598	49	0	0.00	43	9	17.31	-	-	-
TP53	0	genome.wustl.edu	37	17	7576855	7576855	+	Nonsense_Mutation	SNP	G	G	A			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	17	7576855	7576855	G	A	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	nonsense	c.991	p.Q331*	0.999	pfam_p53_tetrameristn,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	105	0	0.00	77	40	34.19	-	-	-
TPH1	0	genome.wustl.edu	37	11	18042690	18042690	+	Missense_Mutation	SNP	G	G	A			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	11	18042690	18042690	G	A	SNP	TPH1	ENST00000341556	human	ensembl	69_37n	-1	known	missense	c.1183	p.R395C	1.000	pfam_Aromatic-AA_hydroxylase_C,superfamily_Aromatic-AA_hydroxylase_C,pirsf_Tyrosine_3-monooxygenase-like,prints_Aromatic-AA_hydroxylase_C,tigrfam_Trp_5_mOase	pfam_Aromatic-AA_hydroxylase_C,pfam_ACT_dom,superfamily_Aromatic-AA_hydroxylase_C,pirsf_Tyrosine_3-monooxygenase-like,prints_Aromatic-AA_hydroxylase_C,tigrfam_Trp_5_mOase	-	no_errors	TPH1	HGNC	ENSG00000129167	147	0	0.00	132	25	15.92	-	-	-
TREML3P	0	genome.wustl.edu	37	6	41185634	41185634	+	RNA	SNP	G	G	C			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	6	41185634	41185634	G	C	SNP	TREML3P	ENST00000564680	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	TREML3P	HGNC	ENSG00000184106	50	0	0.00	60	10	14.29	-	-	-
TRIM72	0	genome.wustl.edu	37	16	31235541	31235541	+	Missense_Mutation	SNP	C	C	A			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	16	31235541	31235541	C	A	SNP	TRIM72	ENST00000322122	human	ensembl	69_37n	+1	known	missense	c.899	p.P300Q	0.867	superfamily_ConA-like_lec_gl,smart_PRY,prints_Butyrophylin,pfscan_B30.2/SPRY	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl,smart_Znf_RING,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,prints_Butyrophylin,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM72	HGNC	ENSG00000177238	21	0	0.00	19	5	20.83	-	-	-
TRIT1	0	genome.wustl.edu	37	1	40348988	40348988	+	Splice_Site	SNP	A	A	T			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	1	40348988	40348988	A	T	SNP	TRIT1	ENST00000316891	human	ensembl	69_37n	-1	known	splice_site	c.174+2	e1+2	1.000	-	-	-	no_errors	TRIT1	HGNC	ENSG00000043514	26	0	0	28	6	17.65	-	-	-
TRMT61B	0	genome.wustl.edu	37	2	29092829	29092829	+	Silent	SNP	C	C	G			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	2	29092829	29092829	C	G	SNP	TRMT61B	ENST00000306108	human	ensembl	69_37n	-1	known	silent	c.315	p.S105	0.000	NULL	pfam_tRNA_MeTrfase_GCD14,pfam_PCMT	-	no_errors	TRMT61B	HGNC	ENSG00000171103	73	0	0.00	57	14	19.72	-	-	-
TRPC5	0	genome.wustl.edu	37	X	111025166	111025166	+	Silent	SNP	G	G	A			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	X	111025166	111025166	G	A	SNP	TRPC5	ENST00000262839	human	ensembl	69_37n	-1	known	silent	c.2097	p.F699	1.000	tigrfam_TRP_channel	pfam_Ion_trans_dom,pfam_TRP_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,prints_TRPC5_channel,prints_TRPC_channel,tigrfam_TRP_channel	-	no_errors	TRPC5	HGNC	ENSG00000072315	75	0	0.00	48	10	17.24	-	-	-
TRPM6	0	genome.wustl.edu	37	9	77403596	77403596	+	Missense_Mutation	SNP	C	C	A			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	9	77403596	77403596	C	A	SNP	TRPM6	ENST00000451710	human	ensembl	69_37n	-1	known	missense	c.2601	p.Q867H	0.059	NULL	pfam_MHCK_EF2_kinase,pfam_Ion_trans_dom,superfamily_Kinase-like_dom,smart_MHCK_EF2_kinase,pfscan_MHCK_EF2_kinase	-	no_errors	TRPM6	HGNC	ENSG00000119121	78	0	0.00	57	24	29.63	-	-	-
TRPM6	0	genome.wustl.edu	37	9	77415343	77415343	+	Missense_Mutation	SNP	G	G	A			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	9	77415343	77415343	G	A	SNP	TRPM6	ENST00000451710	human	ensembl	69_37n	-1	known	missense	c.2065	p.R689C	0.978	NULL	pfam_MHCK_EF2_kinase,pfam_Ion_trans_dom,superfamily_Kinase-like_dom,smart_MHCK_EF2_kinase,pfscan_MHCK_EF2_kinase	-	no_errors	TRPM6	HGNC	ENSG00000119121	47	0	0.00	57	35	38.04	-	-	-
TTC29	0	genome.wustl.edu	37	4	147830218	147830218	+	Silent	SNP	C	C	T			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	4	147830218	147830218	C	T	SNP	TTC29	ENST00000398886	human	ensembl	69_37n	-1	known	silent	c.438	p.L146	0.998	NULL	smart_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC29	HGNC	ENSG00000137473	99	0	0.00	64	39	37.86	-	-	-
TTN	0	genome.wustl.edu	37	2	179435073	179435073	+	Silent	SNP	G	G	C			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	2	179435073	179435073	G	C	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	silent	c.68082	p.L22694	0.503	pfam_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_Fibronectin_type3,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	83	0	0.00	102	17	14.29	-	-	-
TTN	0	genome.wustl.edu	37	2	179616522	179616522	+	Missense_Mutation	SNP	C	C	T			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	2	179616522	179616522	C	T	SNP	TTN	ENST00000360870	human	ensembl	69_37n	-1	known	missense	c.10605	p.M3535I	0.925	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Titin_Z,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	45	0	0.00	48	25	34.25	-	-	-
TYRP1	0	genome.wustl.edu	37	9	12704689	12704689	+	Silent	SNP	G	G	A			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	9	12704689	12704689	G	A	SNP	TYRP1	ENST00000388918	human	ensembl	69_37n	+1	known	silent	c.1245	p.L415	0.992	pfam_Tyrosinase,superfamily_Unchr_di-copper_centre	pfam_Tyrosinase,superfamily_Unchr_di-copper_centre,prints_Tyrosinase	-	no_errors	TYRP1	HGNC	ENSG00000107165	30	0	0.00	62	10	13.89	-	-	-
U2SURP	0	genome.wustl.edu	37	3	142775289	142775289	+	Missense_Mutation	SNP	C	C	A			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	3	142775289	142775289	C	A	SNP	U2SURP	ENST00000319822	human	ensembl	69_37n	+1	known	missense	c.3087	p.H1029Q	1.000	NULL	pfam_Surp,pfam_RRM_dom,superfamily_Surp,superfamily_ENTH_VHS,smart_RRM_dom,smart_Surp,smart_RNA_polymerase_II_lsu_CTD,pfscan_Surp,pfscan_RRM_dom	-	no_errors	U2SURP	HGNC	ENSG00000163714	66	0	0.00	58	23	28.40	-	-	-
WDPCP	0	genome.wustl.edu	37	2	63380681	63380681	+	Missense_Mutation	SNP	C	C	G			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	2	63380681	63380681	C	G	SNP	WDPCP	ENST00000272321	human	ensembl	69_37n	-1	known	missense	c.2107	p.E703Q	0.993	NULL	pfam_DUF3312,superfamily_WD40_repeat_dom	-	no_errors	WDPCP	HGNC	ENSG00000143951	90	0	0.00	82	22	21.15	-	-	-
ZFP30	0	genome.wustl.edu	37	19	38126353	38126353	+	Missense_Mutation	SNP	G	G	T			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	19	38126353	38126353	G	T	SNP	ZFP30	ENST00000351218	human	ensembl	69_37n	-1	known	missense	c.1089	p.F363L	0.955	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZFP30	HGNC	ENSG00000120784	80	0	0.00	38	5	11.63	-	-	-
ZIK1	0	genome.wustl.edu	37	19	58101385	58101385	+	Missense_Mutation	SNP	G	G	A			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	19	58101385	58101385	G	A	SNP	ZIK1	ENST00000307468	human	ensembl	69_37n	+1	known	missense	c.206	p.G69D	0.001	superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZIK1	HGNC	ENSG00000171649	55	0	0.00	69	11	13.75	-	-	-
ZNF407	0	genome.wustl.edu	37	18	72775342	72775342	+	Missense_Mutation	SNP	A	A	T			TCGA-GM-A2DH-01A-11D-A17W-09	TCGA-GM-A2DH-10C-01D-A17W-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3925c12c-b388-40ab-addf-2c3bf2c8398b	7f09df95-48bb-490a-9937-9a3d604760f2	18	72775342	72775342	A	T	SNP	ZNF407	ENST00000299687	human	ensembl	69_37n	+1	known	missense	c.5665	p.T1889S	0.999	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,smart_Znf_U1,pfscan_Znf_C2H2	-	no_errors	ZNF407	HGNC	ENSG00000215421	23	0	0.00	28	10	25.64	-	-	-
