Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
BICD2	0	genome.wustl.edu	37	9	95526977	95526977	+	Missense_Mutation	SNP	G	G	T			TCGA-LL-A440-01A-11D-A243-09	TCGA-LL-A440-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c033740f-b98c-453b-b290-6a1d7d81b72a	3ad6a505-3409-4b03-80fc-f69d88303bb9	9	95526977	95526977	G	T	SNP	BICD2	ENST00000356884	human	ensembl	69_37n	-1	known	missense	c.50	p.A17E	1.000	NULL	pfam_Bicaudal-D_microtubule-assoc	-	no_errors	BICD2	HGNC	ENSG00000185963	25	0	0.00	12	10	41.67	-	-	-
CHEK2	0	genome.wustl.edu	37	22	29120886	29120886	+	Missense_Mutation	SNP	C	C	T			TCGA-LL-A440-01A-11D-A243-09	TCGA-LL-A440-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c033740f-b98c-453b-b290-6a1d7d81b72a	3ad6a505-3409-4b03-80fc-f69d88303bb9	22	29120886	29120886	C	T	SNP	CHEK2	ENST00000448511	human	ensembl	69_37n	-1	known	missense	c.470	p.R157K	0.000	NULL	superfamily_SMAD_FHA_domain	-	no_errors	CHEK2	HGNC	ENSG00000183765	27	0	0.00	27	4	12.90	-	-	-
GALNT3	0	genome.wustl.edu	37	2	166621457	166621457	+	Missense_Mutation	SNP	G	G	T			TCGA-LL-A440-01A-11D-A243-09	TCGA-LL-A440-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c033740f-b98c-453b-b290-6a1d7d81b72a	3ad6a505-3409-4b03-80fc-f69d88303bb9	2	166621457	166621457	G	T	SNP	GALNT3	ENST00000392701	human	ensembl	69_37n	-1	known	missense	c.625	p.L209I	1.000	pfam_Glyco_trans_2	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT3	HGNC	ENSG00000115339	24	0	0.00	14	3	17.65	-	-	-
GPER	0	genome.wustl.edu	37	7	1132016	1132016	+	Missense_Mutation	SNP	G	G	C			TCGA-LL-A440-01A-11D-A243-09	TCGA-LL-A440-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c033740f-b98c-453b-b290-6a1d7d81b72a	3ad6a505-3409-4b03-80fc-f69d88303bb9	7	1132016	1132016	G	C	SNP	GPER	ENST00000297469	human	ensembl	69_37n	+1	known	missense	c.652	p.E218Q	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	GPER	HGNC	ENSG00000164850	41	0	0.00	21	25	54.35	-	-	-
IFI16	0	genome.wustl.edu	37	1	158984516	158984516	+	Missense_Mutation	SNP	G	G	T			TCGA-LL-A440-01A-11D-A243-09	TCGA-LL-A440-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c033740f-b98c-453b-b290-6a1d7d81b72a	3ad6a505-3409-4b03-80fc-f69d88303bb9	1	158984516	158984516	G	T	SNP	IFI16	ENST00000295809	human	ensembl	69_37n	+1	known	missense	c.46	p.V16F	0.000	pfam_DAPIN,superfamily_DEATH-like,pfscan_DAPIN	pfam_HIN200/IF120x,pfam_DAPIN,superfamily_DEATH-like,pfscan_DAPIN,pfscan_HIN200/IF120x	-	no_errors	IFI16	HGNC	ENSG00000163565	39	0	0.00	39	5	11.36	-	-	-
MTSS1L	0	genome.wustl.edu	37	16	70698201	70698201	+	Silent	SNP	C	C	A			TCGA-LL-A440-01A-11D-A243-09	TCGA-LL-A440-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c033740f-b98c-453b-b290-6a1d7d81b72a	3ad6a505-3409-4b03-80fc-f69d88303bb9	16	70698201	70698201	C	A	SNP	MTSS1L	ENST00000338779	human	ensembl	69_37n	-1	known	silent	c.1623	p.G541	0.988	NULL	pfam_IRSp53/MIM_homology_IMD	-	no_errors	MTSS1L	HGNC	ENSG00000132613	45	0	0.00	32	21	38.89	-	-	-
SF3A2	0	genome.wustl.edu	37	19	2245452	2245452	+	Silent	SNP	C	C	A			TCGA-LL-A440-01A-11D-A243-09	TCGA-LL-A440-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c033740f-b98c-453b-b290-6a1d7d81b72a	3ad6a505-3409-4b03-80fc-f69d88303bb9	19	2245452	2245452	C	A	SNP	SF3A2	ENST00000221494	human	ensembl	69_37n	+1	known	silent	c.253	p.R85	0.986	smart_Znf_U1	smart_Znf_U1,pfscan_Znf_C2H2_matrin	-	no_errors	SF3A2	HGNC	ENSG00000104897	47	0	0.00	34	17	33.33	-	-	-
SRCIN1	0	genome.wustl.edu	37	17	36701522	36701522	+	RNA	SNP	G	G	T			TCGA-LL-A440-01A-11D-A243-09	TCGA-LL-A440-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c033740f-b98c-453b-b290-6a1d7d81b72a	3ad6a505-3409-4b03-80fc-f69d88303bb9	17	36701522	36701522	G	T	SNP	SRCIN1	ENST00000584491	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SRCIN1	HGNC	ENSG00000017373	35	0	0.00	38	7	15.56	-	-	-
STAT4	0	genome.wustl.edu	37	2	192011485	192011485	+	Splice_Site	SNP	T	T	A			TCGA-LL-A440-01A-11D-A243-09	TCGA-LL-A440-10A-01D-A243-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c033740f-b98c-453b-b290-6a1d7d81b72a	3ad6a505-3409-4b03-80fc-f69d88303bb9	2	192011485	192011485	T	A	SNP	STAT4	ENST00000358470	human	ensembl	69_37n	-1	known	splice_site	c.129-2	e2-2	1.000	-	-	-	no_errors	STAT4	HGNC	ENSG00000138378	41	0	0.00	45	5	10.00	-	-	-
TRIM2	0	genome.wustl.edu	37	4	154191552	154191552	+	Silent	SNP	C	C	A			TCGA-LL-A440-01A-11D-A243-09	TCGA-LL-A440-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c033740f-b98c-453b-b290-6a1d7d81b72a	3ad6a505-3409-4b03-80fc-f69d88303bb9	4	154191552	154191552	C	A	SNP	TRIM2	ENST00000338700	human	ensembl	69_37n	+1	known	silent	c.96	p.G32	1.000	NULL	pfam_NHL_repeat,pfam_Filamin/ABP280_repeat-like,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_Ig_E-set,smart_Znf_RING,smart_Znf_B-box,smart_Bbox_C,smart_Filamin,pfscan_Filamin/ABP280_repeat-like,pfscan_NHL_repeat_subgr,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM2	HGNC	ENSG00000109654	49	0	0.00	38	13	25.49	-	-	-
ULBP2	0	genome.wustl.edu	37	6	150263287	150263287	+	Missense_Mutation	SNP	C	C	G			TCGA-LL-A440-01A-11D-A243-09	TCGA-LL-A440-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c033740f-b98c-453b-b290-6a1d7d81b72a	3ad6a505-3409-4b03-80fc-f69d88303bb9	6	150263287	150263287	C	G	SNP	ULBP2	ENST00000367351	human	ensembl	69_37n	+1	known	missense	c.79	p.R27G	0.000	NULL	pfam_MHC_I_a_a1/a2,superfamily_MHC_I/II-like_Ag-recog	-	no_errors	ULBP2	HGNC	ENSG00000131015	150	1	0.65	131	36	21.56	-	-	-
ZNF668	0	genome.wustl.edu	37	16	31075646	31075646	+	Silent	SNP	C	C	A			TCGA-LL-A440-01A-11D-A243-09	TCGA-LL-A440-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c033740f-b98c-453b-b290-6a1d7d81b72a	3ad6a505-3409-4b03-80fc-f69d88303bb9	16	31075646	31075646	C	A	SNP	ZNF668	ENST00000426488	human	ensembl	69_37n	-1	known	silent	c.204	p.G68	0.047	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF668	HGNC	ENSG00000167394	25	0	0.00	16	10	38.46	-	-	-
