Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
AMY2B	0	genome.wustl.edu	37	1	104113465	104113465	+	RNA	SNP	C	C	A			TCGA-LL-A50Y-01A-11D-A25Q-09	TCGA-LL-A50Y-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	86f75e23-4693-49c0-961e-cff4c8ce91bb	173efdd7-0fb1-4752-a09b-698cb8f423e4	1	104113465	104113465	C	A	SNP	AMY2B	ENST00000491397	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.982	-	-	-	no_errors	AMY2B	HGNC	ENSG00000240038	13	0	0.00	6	4	40.00	-	-	-
ANO3	0	genome.wustl.edu	37	11	26621259	26621259	+	Missense_Mutation	SNP	C	C	T			TCGA-LL-A50Y-01A-11D-A25Q-09	TCGA-LL-A50Y-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	86f75e23-4693-49c0-961e-cff4c8ce91bb	173efdd7-0fb1-4752-a09b-698cb8f423e4	11	26621259	26621259	C	T	SNP	ANO3	ENST00000256737	human	ensembl	69_37n	+1	known	missense	c.1834	p.L612F	1.000	pfam_Anoctamin	pfam_Anoctamin	-	no_errors	ANO3	HGNC	ENSG00000134343	55	0	0.00	33	17	34.00	-	-	-
ARFGAP1	0	genome.wustl.edu	37	20	61907998	61907998	+	Missense_Mutation	SNP	G	G	T			TCGA-LL-A50Y-01A-11D-A25Q-09	TCGA-LL-A50Y-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	86f75e23-4693-49c0-961e-cff4c8ce91bb	173efdd7-0fb1-4752-a09b-698cb8f423e4	20	61907998	61907998	G	T	SNP	ARFGAP1	ENST00000353546	human	ensembl	69_37n	+1	known	missense	c.337	p.D113Y	1.000	pfam_ArfGAP,superfamily_ArfGAP,smart_ArfGAP,pfscan_ArfGAP	pfam_ArfGAP,superfamily_ArfGAP,smart_ArfGAP,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	ARFGAP1	HGNC	ENSG00000101199	37	0	0.00	31	4	11.43	-	-	-
CD101	0	genome.wustl.edu	37	1	117576699	117576699	+	Silent	SNP	C	C	T			TCGA-LL-A50Y-01A-11D-A25Q-09	TCGA-LL-A50Y-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	86f75e23-4693-49c0-961e-cff4c8ce91bb	173efdd7-0fb1-4752-a09b-698cb8f423e4	1	117576699	117576699	C	T	SNP	CD101	ENST00000256652	human	ensembl	69_37n	+1	known	silent	c.3042	p.D1014	0.000	NULL	pfam_Ig_V-set,pfam_Ig_I-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like	-	no_errors	CD101	HGNC	ENSG00000134256	27	0	0.00	15	9	37.50	-	-	-
CDCP2	0	genome.wustl.edu	37	1	54598912	54598912	+	RNA	SNP	G	G	A			TCGA-LL-A50Y-01A-11D-A25Q-09	TCGA-LL-A50Y-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	86f75e23-4693-49c0-961e-cff4c8ce91bb	173efdd7-0fb1-4752-a09b-698cb8f423e4	1	54598912	54598912	G	A	SNP	CDCP2	ENST00000530059	human	ensembl	69_37n	-1	putative	rna	NULL	NULL	0.004	-	-	-	no_errors	CDCP2	HGNC	ENSG00000157211	29	0	0.00	39	14	26.42	-	-	-
CDH1	0	genome.wustl.edu	37	16	68772218	68772218	+	Nonsense_Mutation	SNP	C	C	T			TCGA-LL-A50Y-01A-11D-A25Q-09	TCGA-LL-A50Y-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	86f75e23-4693-49c0-961e-cff4c8ce91bb	173efdd7-0fb1-4752-a09b-698cb8f423e4	16	68772218	68772218	C	T	SNP	CDH1	ENST00000261769	human	ensembl	69_37n	+1	known	nonsense	c.67	p.Q23*	0.982	superfamily_Cadherin-like	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH1	HGNC	ENSG00000039068	73	0	0.00	26	41	61.19	-	-	-
COL7A1	0	genome.wustl.edu	37	3	48625810	48625810	+	Missense_Mutation	SNP	G	G	A			TCGA-LL-A50Y-01A-11D-A25Q-09	TCGA-LL-A50Y-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	86f75e23-4693-49c0-961e-cff4c8ce91bb	173efdd7-0fb1-4752-a09b-698cb8f423e4	3	48625810	48625810	G	A	SNP	COL7A1	ENST00000328333	human	ensembl	69_37n	-1	known	missense	c.2615	p.T872M	0.856	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Collagen,pfam_Fibronectin_type3,pfam_VWF_A,pfam_Prot_inh_Kunz-m,superfamily_Fibronectin_type3,superfamily_Prot_inh_Kunz-m,smart_VWF_A,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_VWF_A,pfscan_Prot_inh_Kunz-m,prints_Prot_inh_Kunz-m	-	no_errors	COL7A1	HGNC	ENSG00000114270	18	0	0.00	16	8	33.33	-	-	-
CROCC	0	genome.wustl.edu	37	1	17273313	17273313	+	Missense_Mutation	SNP	A	A	G			TCGA-LL-A50Y-01A-11D-A25Q-09	TCGA-LL-A50Y-10A-01D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	86f75e23-4693-49c0-961e-cff4c8ce91bb	173efdd7-0fb1-4752-a09b-698cb8f423e4	1	17273313	17273313	A	G	SNP	CROCC	ENST00000375541	human	ensembl	69_37n	+1	known	missense	c.2341	p.T781A	0.013	NULL	superfamily_Prefoldin,superfamily_t-SNARE	-	no_errors	CROCC	HGNC	ENSG00000058453	58	0	0.00	63	16	20.00	-	-	-
CTNNA2	0	genome.wustl.edu	37	2	80101233	80101233	+	Missense_Mutation	SNP	T	T	A			TCGA-LL-A50Y-01A-11D-A25Q-09	TCGA-LL-A50Y-10A-01D-A25Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	86f75e23-4693-49c0-961e-cff4c8ce91bb	173efdd7-0fb1-4752-a09b-698cb8f423e4	2	80101233	80101233	T	A	SNP	CTNNA2	ENST00000361291	human	ensembl	69_37n	+1	known	missense	c.719	p.M240K	1.000	pfam_Vinculin/catenin,superfamily_Vinculin/catenin	pfam_Vinculin/catenin,superfamily_Vinculin/catenin,prints_Alpha_catenin,prints_Vinculin	-	no_errors	CTNNA2	HGNC	ENSG00000066032	22	0	0.00	5	8	61.54	-	-	-
EFCAB12	0	genome.wustl.edu	37	3	129130137	129130137	+	Missense_Mutation	SNP	T	T	A			TCGA-LL-A50Y-01A-11D-A25Q-09	TCGA-LL-A50Y-10A-01D-A25Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	86f75e23-4693-49c0-961e-cff4c8ce91bb	173efdd7-0fb1-4752-a09b-698cb8f423e4	3	129130137	129130137	T	A	SNP	EFCAB12	ENST00000326085	human	ensembl	69_37n	-1	known	missense	c.899	p.D300V	0.000	NULL	pfscan_EF_HAND_2	-	no_errors	EFCAB12	HGNC	ENSG00000172771	62	0	0.00	45	20	30.77	-	-	-
FAM73A	0	genome.wustl.edu	37	1	78309071	78309071	+	Silent	SNP	T	T	C			TCGA-LL-A50Y-01A-11D-A25Q-09	TCGA-LL-A50Y-10A-01D-A25Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	86f75e23-4693-49c0-961e-cff4c8ce91bb	173efdd7-0fb1-4752-a09b-698cb8f423e4	1	78309071	78309071	T	C	SNP	FAM73A	ENST00000370791	human	ensembl	69_37n	+1	known	silent	c.975	p.D325	0.996	pfam_DUF2217	pfam_DUF2217	-	no_errors	FAM73A	HGNC	ENSG00000180488	79	0	0.00	38	23	37.70	-	-	-
GPNMB	0	genome.wustl.edu	37	7	23306203	23306203	+	Silent	SNP	T	T	C			TCGA-LL-A50Y-01A-11D-A25Q-09	TCGA-LL-A50Y-10A-01D-A25Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	86f75e23-4693-49c0-961e-cff4c8ce91bb	173efdd7-0fb1-4752-a09b-698cb8f423e4	7	23306203	23306203	T	C	SNP	GPNMB	ENST00000381990	human	ensembl	69_37n	+1	known	silent	c.1122	p.Y374	0.894	smart_PKD/Chitinase_dom	pfam_PKD_dom,superfamily_PKD_dom,smart_PKD/Chitinase_dom,pfscan_PKD_dom	-	no_errors	GPNMB	HGNC	ENSG00000136235	51	0	0.00	31	18	36.73	-	-	-
HBS1L	0	genome.wustl.edu	37	6	135299856	135299856	+	Silent	SNP	G	G	A			TCGA-LL-A50Y-01A-11D-A25Q-09	TCGA-LL-A50Y-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	86f75e23-4693-49c0-961e-cff4c8ce91bb	173efdd7-0fb1-4752-a09b-698cb8f423e4	6	135299856	135299856	G	A	SNP	HBS1L	ENST00000367837	human	ensembl	69_37n	-1	known	silent	c.1758	p.L586	1.000	pfam_Transl_elong_EFTu/EF1A_C,superfamily_Transl_elong_EF1A/Init_IF2_C	pfam_DUF1916,pfam_ProtSyn_GTP-bd,pfam_Transl_elong_EFTu/EF1A_C,pfam_Transl_elong_EFTu/EF1A_2,superfamily_Transl_elong_EF1A/Init_IF2_C,superfamily_Transl_elong_init/rib_B-barrel,prints_ProtSyn_GTP-bd	-	no_errors	HBS1L	HGNC	ENSG00000112339	38	0	0.00	29	4	12.12	-	-	-
KIF20B	0	genome.wustl.edu	37	10	91498016	91498016	+	Nonsense_Mutation	SNP	C	C	T			TCGA-LL-A50Y-01A-11D-A25Q-09	TCGA-LL-A50Y-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	86f75e23-4693-49c0-961e-cff4c8ce91bb	173efdd7-0fb1-4752-a09b-698cb8f423e4	10	91498016	91498016	C	T	SNP	KIF20B	ENST00000416354	human	ensembl	69_37n	+1	known	nonsense	c.3508	p.Q1170*	0.208	NULL	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF20B	HGNC	ENSG00000138182	36	0	0.00	14	14	50.00	-	-	-
KIF2B	0	genome.wustl.edu	37	17	51900667	51900667	+	Silent	SNP	G	G	A			TCGA-LL-A50Y-01A-11D-A25Q-09	TCGA-LL-A50Y-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	86f75e23-4693-49c0-961e-cff4c8ce91bb	173efdd7-0fb1-4752-a09b-698cb8f423e4	17	51900667	51900667	G	A	SNP	KIF2B	ENST00000268919	human	ensembl	69_37n	+1	known	silent	c.273	p.P91	0.000	NULL	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF2B	HGNC	ENSG00000141200	19	0	0.00	17	7	29.17	-	-	-
KLHL9	0	genome.wustl.edu	37	9	21333116	21333116	+	Silent	SNP	T	T	A			TCGA-LL-A50Y-01A-11D-A25Q-09	TCGA-LL-A50Y-10A-01D-A25Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	86f75e23-4693-49c0-961e-cff4c8ce91bb	173efdd7-0fb1-4752-a09b-698cb8f423e4	9	21333116	21333116	T	A	SNP	KLHL9	ENST00000359039	human	ensembl	69_37n	-1	known	silent	c.1743	p.P581	0.986	smart_Kelch_1,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL9	HGNC	ENSG00000198642	58	0	0.00	51	27	34.62	-	-	-
LYPD4	0	genome.wustl.edu	37	19	42342168	42342168	+	Missense_Mutation	SNP	G	G	A			TCGA-LL-A50Y-01A-11D-A25Q-09	TCGA-LL-A50Y-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	86f75e23-4693-49c0-961e-cff4c8ce91bb	173efdd7-0fb1-4752-a09b-698cb8f423e4	19	42342168	42342168	G	A	SNP	LYPD4	ENST00000330743	human	ensembl	69_37n	-1	known	missense	c.379	p.L127F	0.872	NULL	pfam_LY6_UPAR	-	no_errors	LYPD4	HGNC	ENSG00000183103	59	0	0.00	40	21	34.43	-	-	-
MCAM	0	genome.wustl.edu	37	11	119183643	119183643	+	Silent	SNP	C	C	T			TCGA-LL-A50Y-01A-11D-A25Q-09	TCGA-LL-A50Y-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	86f75e23-4693-49c0-961e-cff4c8ce91bb	173efdd7-0fb1-4752-a09b-698cb8f423e4	11	119183643	119183643	C	T	SNP	MCAM	ENST00000264036	human	ensembl	69_37n	-1	known	silent	c.576	p.S192	0.000	pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Immunoglobulin,pfam_CD80_C2-set,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	MCAM	HGNC	ENSG00000076706	39	0	0.00	32	20	38.46	-	-	-
MFI2	0	genome.wustl.edu	37	3	196730792	196730792	+	Missense_Mutation	SNP	G	G	A			TCGA-LL-A50Y-01A-11D-A25Q-09	TCGA-LL-A50Y-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	86f75e23-4693-49c0-961e-cff4c8ce91bb	173efdd7-0fb1-4752-a09b-698cb8f423e4	3	196730792	196730792	G	A	SNP	MFI2	ENST00000296350	human	ensembl	69_37n	-1	known	missense	c.2117	p.S706F	0.981	smart_Peptidase_S60,pirsf_Transferrin	pfam_Peptidase_S60,smart_Peptidase_S60,pirsf_Transferrin,prints_Peptidase_S60	-	no_errors	MFI2	HGNC	ENSG00000163975	47	0	0.00	40	18	31.03	-	-	-
MIR3179-1	0	genome.wustl.edu	37	16	14995686	14995686	+	RNA	SNP	G	G	A			TCGA-LL-A50Y-01A-11D-A25Q-09	TCGA-LL-A50Y-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	86f75e23-4693-49c0-961e-cff4c8ce91bb	173efdd7-0fb1-4752-a09b-698cb8f423e4	16	14995686	14995686	G	A	SNP	MIR3179-1	ENST00000546674	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.037	-	-	-	no_errors	MIR3179-1	HGNC	ENSG00000257264	14	0	0.00	9	5	35.71	-	-	-
MLL3	0	genome.wustl.edu	37	7	151880169	151880169	+	Nonsense_Mutation	SNP	G	G	A			TCGA-LL-A50Y-01A-11D-A25Q-09	TCGA-LL-A50Y-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	86f75e23-4693-49c0-961e-cff4c8ce91bb	173efdd7-0fb1-4752-a09b-698cb8f423e4	7	151880169	151880169	G	A	SNP	MLL3	ENST00000355193	human	ensembl	69_37n	-1	known	nonsense	c.5155	p.Q1719*	1.000	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Znf_RING,smart_HMG_superfamily,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_DHHC_palmitoyltrfase,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	MLL3	HGNC	ENSG00000055609	108	0	0.00	61	44	41.90	-	-	-
MST1	0	genome.wustl.edu	37	3	49721622	49721622	+	Missense_Mutation	SNP	C	C	T			TCGA-LL-A50Y-01A-11D-A25Q-09	TCGA-LL-A50Y-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	86f75e23-4693-49c0-961e-cff4c8ce91bb	173efdd7-0fb1-4752-a09b-698cb8f423e4	3	49721622	49721622	C	T	SNP	MST1	ENST00000449682	human	ensembl	69_37n	-1	known	missense	c.2017	p.G673S	1.000	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	pfam_Kringle,pfam_Peptidase_S1_S6,pfam_PAN-1_domain,superfamily_Pept_cys/ser_Trypsin-like,superfamily_Kringle-like,smart_Pan_app,smart_Kringle,smart_Peptidase_S1_S6,pfscan_Pan_app,pfscan_Kringle,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	MST1	HGNC	ENSG00000173531	107	1	0.93	72	11	13.25	-	-	-
OBSL1	0	genome.wustl.edu	37	2	220431781	220431781	+	Silent	SNP	G	G	A			TCGA-LL-A50Y-01A-11D-A25Q-09	TCGA-LL-A50Y-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	86f75e23-4693-49c0-961e-cff4c8ce91bb	173efdd7-0fb1-4752-a09b-698cb8f423e4	2	220431781	220431781	G	A	SNP	OBSL1	ENST00000404537	human	ensembl	69_37n	-1	known	silent	c.1905	p.F635	1.000	smart_Ig_sub	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	OBSL1	HGNC	ENSG00000124006	45	0	0.00	41	25	37.88	-	-	-
OR7A5	0	genome.wustl.edu	37	19	14938212	14938212	+	Missense_Mutation	SNP	A	A	T			TCGA-LL-A50Y-01A-11D-A25Q-09	TCGA-LL-A50Y-10A-01D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	86f75e23-4693-49c0-961e-cff4c8ce91bb	173efdd7-0fb1-4752-a09b-698cb8f423e4	19	14938212	14938212	A	T	SNP	OR7A5	ENST00000322301	human	ensembl	69_37n	-1	known	missense	c.842	p.V281D	0.006	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR7A5	HGNC	ENSG00000188269	57	0	0.00	32	32	50.00	-	-	-
PCGF6	0	genome.wustl.edu	37	10	105110755	105110756	+	Frame_Shift_Del	DEL	CA	CA	-			TCGA-LL-A50Y-01A-11D-A25Q-09	TCGA-LL-A50Y-10A-01D-A25Q-09	CA	CA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	86f75e23-4693-49c0-961e-cff4c8ce91bb	173efdd7-0fb1-4752-a09b-698cb8f423e4	10	105110755	105110756	CA	-	DEL	PCGF6	ENST00000369847	human	ensembl	69_37n	-1	known	frame_shift_del	c.69_68	p.L23fs	0.953:0.836	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	PCGF6	HGNC	ENSG00000156374	13	0	0.00	7	4	36.36	-	-	-
PDE9A	0	genome.wustl.edu	37	21	44174151	44174151	+	Missense_Mutation	SNP	G	G	A			TCGA-LL-A50Y-01A-11D-A25Q-09	TCGA-LL-A50Y-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	86f75e23-4693-49c0-961e-cff4c8ce91bb	173efdd7-0fb1-4752-a09b-698cb8f423e4	21	44174151	44174151	G	A	SNP	PDE9A	ENST00000291539	human	ensembl	69_37n	+1	known	missense	c.787	p.V263I	1.000	NULL	pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE9A	HGNC	ENSG00000160191	33	0	0.00	29	12	29.27	-	-	-
PIK3CA	0	genome.wustl.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G			TCGA-LL-A50Y-01A-11D-A25Q-09	TCGA-LL-A50Y-10A-01D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	86f75e23-4693-49c0-961e-cff4c8ce91bb	173efdd7-0fb1-4752-a09b-698cb8f423e4	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	+1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	16	0	0.00	18	13	41.94	-	-	-
PIP5KL1	0	genome.wustl.edu	37	9	130689444	130689444	+	Missense_Mutation	SNP	C	C	T			TCGA-LL-A50Y-01A-11D-A25Q-09	TCGA-LL-A50Y-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	86f75e23-4693-49c0-961e-cff4c8ce91bb	173efdd7-0fb1-4752-a09b-698cb8f423e4	9	130689444	130689444	C	T	SNP	PIP5KL1	ENST00000300432	human	ensembl	69_37n	-1	known	missense	c.29	p.R10H	1.000	pfam_PInositol-4-P-5-kinase_core,smart_PInositol-4P-5-kinase_core_sub	pfam_PInositol-4-P-5-kinase_core,smart_PInositol-4P-5-kinase_core_sub	-	no_errors	PIP5KL1	HGNC	ENSG00000167103	47	0	0.00	33	4	10.81	-	-	-
POU4F1	0	genome.wustl.edu	37	13	79177419	79177419	+	Missense_Mutation	SNP	G	G	T			TCGA-LL-A50Y-01A-11D-A25Q-09	TCGA-LL-A50Y-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	86f75e23-4693-49c0-961e-cff4c8ce91bb	173efdd7-0fb1-4752-a09b-698cb8f423e4	13	79177419	79177419	G	T	SNP	POU4F1	ENST00000377208	human	ensembl	69_37n	-1	known	missense	c.43	p.P15T	1.000	NULL	pfam_POU_specific,pfam_Homeodomain,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_POU_specific,smart_Homeodomain,pfscan_Homeodomain,pfscan_POU_specific,prints_POU	-	no_errors	POU4F1	HGNC	ENSG00000152192	35	0	0.00	22	4	15.38	-	-	-
PSG6	0	genome.wustl.edu	37	19	43407829	43407829	+	Missense_Mutation	SNP	A	A	C			TCGA-LL-A50Y-01A-11D-A25Q-09	TCGA-LL-A50Y-10A-01D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	86f75e23-4693-49c0-961e-cff4c8ce91bb	173efdd7-0fb1-4752-a09b-698cb8f423e4	19	43407829	43407829	A	C	SNP	PSG6	ENST00000292125	human	ensembl	69_37n	-1	known	missense	c.1285	p.F429V	0.000	NULL	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	PSG6	HGNC	ENSG00000170848	75	0	0.00	37	17	31.48	-	-	-
ROBO4	0	genome.wustl.edu	37	11	124756666	124756666	+	Missense_Mutation	SNP	A	A	G			TCGA-LL-A50Y-01A-11D-A25Q-09	TCGA-LL-A50Y-10A-01D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	86f75e23-4693-49c0-961e-cff4c8ce91bb	173efdd7-0fb1-4752-a09b-698cb8f423e4	11	124756666	124756666	A	G	SNP	ROBO4	ENST00000306534	human	ensembl	69_37n	-1	known	missense	c.2488	p.Y830H	0.945	NULL	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	ROBO4	HGNC	ENSG00000154133	58	0	0.00	25	17	40.48	-	-	-
RUNDC3B	0	genome.wustl.edu	37	7	87323239	87323239	+	Missense_Mutation	SNP	G	G	A			TCGA-LL-A50Y-01A-11D-A25Q-09	TCGA-LL-A50Y-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	86f75e23-4693-49c0-961e-cff4c8ce91bb	173efdd7-0fb1-4752-a09b-698cb8f423e4	7	87323239	87323239	G	A	SNP	RUNDC3B	ENST00000338056	human	ensembl	69_37n	+1	known	missense	c.254	p.C85Y	1.000	pfam_Run,pfscan_Run	pfam_Run,smart_Run,pfscan_Run	-	no_errors	RUNDC3B	HGNC	ENSG00000105784	53	0	0.00	47	26	35.62	-	-	-
SETMAR	0	genome.wustl.edu	37	3	4345766	4345766	+	RNA	SNP	C	C	T			TCGA-LL-A50Y-01A-11D-A25Q-09	TCGA-LL-A50Y-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	86f75e23-4693-49c0-961e-cff4c8ce91bb	173efdd7-0fb1-4752-a09b-698cb8f423e4	3	4345766	4345766	C	T	SNP	SETMAR	ENST00000462115	human	ensembl	69_37n	+1	putative	rna	NULL	NULL	0.001	-	-	-	no_errors	SETMAR	HGNC	ENSG00000170364	37	0	0.00	19	3	13.64	-	-	-
SLC45A1	0	genome.wustl.edu	37	1	8390620	8390620	+	Frame_Shift_Del	DEL	G	G	-			TCGA-LL-A50Y-01A-11D-A25Q-09	TCGA-LL-A50Y-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	86f75e23-4693-49c0-961e-cff4c8ce91bb	173efdd7-0fb1-4752-a09b-698cb8f423e4	1	8390620	8390620	G	-	DEL	SLC45A1	ENST00000377479	human	ensembl	69_37n	+1	known	frame_shift_del	c.1169	p.S390fs	0.999	NULL	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	-	no_errors	SLC45A1	HGNC	ENSG00000162426	64	0	0.00	60	18	21.95	-	-	-
TGFBR2	0	genome.wustl.edu	37	3	30713273	30713273	+	Missense_Mutation	SNP	A	A	G			TCGA-LL-A50Y-01A-11D-A25Q-09	TCGA-LL-A50Y-10A-01D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	86f75e23-4693-49c0-961e-cff4c8ce91bb	173efdd7-0fb1-4752-a09b-698cb8f423e4	3	30713273	30713273	A	G	SNP	TGFBR2	ENST00000359013	human	ensembl	69_37n	+1	known	missense	c.673	p.T225A	0.044	pirsf_Transform_growth_fac-b_typ-2	pirsf_Transform_growth_fac-b_typ-2,pfam_Transforming_GF_b_rcpt_2_ecto,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Activin_II/TGFBeta-II_recpt,pfscan_Prot_kinase_cat_dom	-	no_errors	TGFBR2	HGNC	ENSG00000163513	35	0	0.00	21	13	38.24	-	-	-
TGS1	0	genome.wustl.edu	37	8	56711725	56711725	+	Missense_Mutation	SNP	G	G	A			TCGA-LL-A50Y-01A-11D-A25Q-09	TCGA-LL-A50Y-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	86f75e23-4693-49c0-961e-cff4c8ce91bb	173efdd7-0fb1-4752-a09b-698cb8f423e4	8	56711725	56711725	G	A	SNP	TGS1	ENST00000260129	human	ensembl	69_37n	+1	known	missense	c.1795	p.E599K	0.000	NULL	pfam_RNA_cap_Gua-N2-MeTrfase,pfam_RNA_methylase_dom,pfam_tRNA_Trfase_Trm5/Tyw2	-	no_errors	TGS1	HGNC	ENSG00000137574	31	0	0.00	11	3	21.43	-	-	-
TRAK1	0	genome.wustl.edu	37	3	42234667	42234667	+	Silent	SNP	A	A	G			TCGA-LL-A50Y-01A-11D-A25Q-09	TCGA-LL-A50Y-10A-01D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	86f75e23-4693-49c0-961e-cff4c8ce91bb	173efdd7-0fb1-4752-a09b-698cb8f423e4	3	42234667	42234667	A	G	SNP	TRAK1	ENST00000396175	human	ensembl	69_37n	+1	known	silent	c.696	p.Q232	0.931	pfam_HAP1_N	pfam_HAP1_N,pfam_Traffickng_kinesin-bd_prot_dom	-	no_errors	TRAK1	HGNC	ENSG00000182606	59	0	0.00	40	21	34.43	-	-	-
TUT1	0	genome.wustl.edu	37	11	62343415	62343415	+	Silent	SNP	G	G	A			TCGA-LL-A50Y-01A-11D-A25Q-09	TCGA-LL-A50Y-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	86f75e23-4693-49c0-961e-cff4c8ce91bb	173efdd7-0fb1-4752-a09b-698cb8f423e4	11	62343415	62343415	G	A	SNP	TUT1	ENST00000308436	human	ensembl	69_37n	-1	known	silent	c.1890	p.L630	0.995	NULL	pfam_PAP_assoc,pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	TUT1	HGNC	ENSG00000149016	21	0	0.00	20	19	48.72	-	-	-
UBTF	0	genome.wustl.edu	37	17	42287812	42287812	+	Silent	SNP	G	G	A			TCGA-LL-A50Y-01A-11D-A25Q-09	TCGA-LL-A50Y-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	86f75e23-4693-49c0-961e-cff4c8ce91bb	173efdd7-0fb1-4752-a09b-698cb8f423e4	17	42287812	42287812	G	A	SNP	UBTF	ENST00000302904	human	ensembl	69_37n	-1	known	silent	c.1389	p.L463	1.000	pfam_HMG_superfamily,superfamily_HMG_superfamily,superfamily_ARM-type_fold,smart_HMG_superfamily,pfscan_HMG_superfamily	pfam_HMG_superfamily,superfamily_HMG_superfamily,superfamily_ARM-type_fold,smart_HMG_superfamily,pfscan_HMG_superfamily	-	no_errors	UBTF	HGNC	ENSG00000108312	33	0	0.00	16	8	33.33	-	-	-
VDAC1	0	genome.wustl.edu	37	5	133316707	133316708	+	RNA	INS	-	-	T			TCGA-LL-A50Y-01A-11D-A25Q-09	TCGA-LL-A50Y-10A-01D-A25Q-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	86f75e23-4693-49c0-961e-cff4c8ce91bb	173efdd7-0fb1-4752-a09b-698cb8f423e4	5	133316707	133316708	-	T	INS	VDAC1	ENST00000492324	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000:0.001	-	-	-	no_errors	VDAC1	HGNC	ENSG00000213585	8	0	0.00	11	4	26.67	-	-	-
ZFPM1	0	genome.wustl.edu	37	16	88594480	88594480	+	Frame_Shift_Del	DEL	G	G	-			TCGA-LL-A50Y-01A-11D-A25Q-09	TCGA-LL-A50Y-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	86f75e23-4693-49c0-961e-cff4c8ce91bb	173efdd7-0fb1-4752-a09b-698cb8f423e4	16	88594480	88594480	G	-	DEL	ZFPM1	ENST00000319555	human	ensembl	69_37n	+1	known	frame_shift_del	c.546	p.G184fs	0.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZFPM1	HGNC	ENSG00000179588	37	0	0.00	11	16	59.26	-	-	-
ZNF260	0	genome.wustl.edu	37	19	37005895	37005895	+	Silent	SNP	T	T	A			TCGA-LL-A50Y-01A-11D-A25Q-09	TCGA-LL-A50Y-10A-01D-A25Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	86f75e23-4693-49c0-961e-cff4c8ce91bb	173efdd7-0fb1-4752-a09b-698cb8f423e4	19	37005895	37005895	T	A	SNP	ZNF260	ENST00000523638	human	ensembl	69_37n	-1	known	silent	c.246	p.A82	0.037	pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF260	HGNC	ENSG00000254004	45	0	0.00	22	14	38.89	-	-	-
ZNF285	0	genome.wustl.edu	37	19	44891062	44891063	+	Frame_Shift_Del	DEL	CT	CT	-			TCGA-LL-A50Y-01A-11D-A25Q-09	TCGA-LL-A50Y-10A-01D-A25Q-09	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	86f75e23-4693-49c0-961e-cff4c8ce91bb	173efdd7-0fb1-4752-a09b-698cb8f423e4	19	44891062	44891063	CT	-	DEL	ZNF285	ENST00000330997	human	ensembl	69_37n	-1	known	frame_shift_del	c.1345_1344	p.R448fs	0.997:0.985	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF285	HGNC	ENSG00000267508	82	0	0.00	43	36	45.00	-	-	-
