Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
ABCG4	0	genome.wustl.edu	37	11	119028976	119028976	+	Silent	SNP	C	C	T			TCGA-A1-A0SP-01A-11D-A099-09	TCGA-A1-A0SP-10A-02D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3ae9617-b6cd-4d98-b631-39bd4afd3c4e	a409caa8-efd1-4fc8-9753-fa253e65c58d	11	119028976	119028976	C	T	SNP	ABCG4	ENST00000307417	human	ensembl	69_37n	+1	known	silent	c.1101	p.A367	1.000	NULL	pfam_ABC_2_trans,pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCG4	HGNC	ENSG00000172350	57	0	0.00	78	81	50.94	-	-	-
ALDH18A1	0	genome.wustl.edu	37	10	97371060	97371060	+	Missense_Mutation	SNP	A	A	G			TCGA-A1-A0SP-01A-11D-A099-09	TCGA-A1-A0SP-10A-02D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3ae9617-b6cd-4d98-b631-39bd4afd3c4e	a409caa8-efd1-4fc8-9753-fa253e65c58d	10	97371060	97371060	A	G	SNP	ALDH18A1	ENST00000371224	human	ensembl	69_37n	-1	known	missense	c.2063	p.I688T	1.000	superfamily_Ald_DH/histidinol_DH,pirsf_P5_carboxy_syn,tigrfam_P5_carboxy_syn,tigrfam_G-glutamylP_reductase	pfam_Asp/Glu/Uridylate_kinase,pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH,superfamily_Asp/Glu/Uridylate_kinase,pirsf_P5_carboxy_syn,prints_Glu/AcGlu_kinase,tigrfam_P5_carboxy_syn,tigrfam_G-glutamylP_reductase	-	no_errors	ALDH18A1	HGNC	ENSG00000059573	113	0	0.00	174	135	43.69	-	-	-
ALG13	0	genome.wustl.edu	37	X	110970225	110970225	+	Missense_Mutation	SNP	G	G	A			TCGA-A1-A0SP-01A-11D-A099-09	TCGA-A1-A0SP-10A-02D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3ae9617-b6cd-4d98-b631-39bd4afd3c4e	a409caa8-efd1-4fc8-9753-fa253e65c58d	X	110970225	110970225	G	A	SNP	ALG13	ENST00000251943	human	ensembl	69_37n	+1	known	missense	c.1606	p.E536K	0.999	NULL	pfam_OTU,pfscan_OTU,pfscan_Tudor	-	no_errors	ALG13	HGNC	ENSG00000101901	97	0	0.00	127	55	30.22	-	-	-
ARID1A	0	genome.wustl.edu	37	1	27106816	27106816	+	Missense_Mutation	SNP	C	C	T			TCGA-A1-A0SP-01A-11D-A099-09	TCGA-A1-A0SP-10A-02D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3ae9617-b6cd-4d98-b631-39bd4afd3c4e	a409caa8-efd1-4fc8-9753-fa253e65c58d	1	27106816	27106816	C	T	SNP	ARID1A	ENST00000324856	human	ensembl	69_37n	+1	known	missense	c.6427	p.R2143C	1.000	pfam_DUF3518,superfamily_ARM-type_fold	pfam_DUF3518,pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID1A	HGNC	ENSG00000117713	69	0	0.00	94	12	11.32	-	-	-
ASPM	0	genome.wustl.edu	37	1	197056085	197056085	+	Frame_Shift_Del	DEL	G	G	-			TCGA-A1-A0SP-01A-11D-A099-09	TCGA-A1-A0SP-10A-02D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3ae9617-b6cd-4d98-b631-39bd4afd3c4e	a409caa8-efd1-4fc8-9753-fa253e65c58d	1	197056085	197056085	G	-	DEL	ASPM	ENST00000367409	human	ensembl	69_37n	-1	known	frame_shift_del	c.10179	p.V3395fs	0.998	NULL	pfam_IQ_motif_EF-hand-BS,pfam_CAMSAP_CH,pfam_CH-domain,superfamily_CH-domain,superfamily_ARM-type_fold,smart_CH-domain,smart_IQ_motif_EF-hand-BS,pfscan_CH-domain,pfscan_IQ_motif_EF-hand-BS	-	no_errors	ASPM	HGNC	ENSG00000066279	222	0	0.00	43	11	20.37	-	-	-
ATG2A	0	genome.wustl.edu	37	11	64668490	64668490	+	Missense_Mutation	SNP	C	C	T			TCGA-A1-A0SP-01A-11D-A099-09	TCGA-A1-A0SP-10A-02D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3ae9617-b6cd-4d98-b631-39bd4afd3c4e	a409caa8-efd1-4fc8-9753-fa253e65c58d	11	64668490	64668490	C	T	SNP	ATG2A	ENST00000418259	human	ensembl	69_37n	-1	novel	missense	c.3604	p.A1202T	1.000	NULL	pfam_Autophagy-rel_C	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ATG2A	HGNC	ENSG00000110046	28	0	0.00	28	6	17.65	-	-	-
BATF2	0	genome.wustl.edu	37	11	64756807	64756807	+	Nonsense_Mutation	SNP	G	G	A			TCGA-A1-A0SP-01A-11D-A099-09	TCGA-A1-A0SP-10A-02D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3ae9617-b6cd-4d98-b631-39bd4afd3c4e	a409caa8-efd1-4fc8-9753-fa253e65c58d	11	64756807	64756807	G	A	SNP	BATF2	ENST00000301887	human	ensembl	69_37n	-1	known	nonsense	c.619	p.Q207*	0.602	NULL	pfam_bZIP_1,pfam_bZIP_2,superfamily_Euk_TF_DNA-bd,smart_bZIP,pfscan_bZIP	-	no_errors	BATF2	HGNC	ENSG00000168062	52	0	0.00	90	21	18.92	-	-	-
BSG	0	genome.wustl.edu	37	19	580426	580426	+	Missense_Mutation	SNP	C	C	T			TCGA-A1-A0SP-01A-11D-A099-09	TCGA-A1-A0SP-10A-02D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3ae9617-b6cd-4d98-b631-39bd4afd3c4e	a409caa8-efd1-4fc8-9753-fa253e65c58d	19	580426	580426	C	T	SNP	BSG	ENST00000333511	human	ensembl	69_37n	+1	known	missense	c.620	p.P207L	0.164	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	BSG	HGNC	ENSG00000172270	23	0	0.00	73	23	23.96	-	-	-
CCDC172	0	genome.wustl.edu	37	10	118101618	118101618	+	Frame_Shift_Del	DEL	A	A	-			TCGA-A1-A0SP-01A-11D-A099-09	TCGA-A1-A0SP-10A-02D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3ae9617-b6cd-4d98-b631-39bd4afd3c4e	a409caa8-efd1-4fc8-9753-fa253e65c58d	10	118101618	118101618	A	-	DEL	CCDC172	ENST00000333254	human	ensembl	69_37n	+1	known	frame_shift_del	c.353	p.D118fs	0.998	NULL	NULL	-	no_errors	CCDC172	HGNC	ENSG00000182645	41	0	0.00	13	2	13.33	-	-	-
COPS7B	0	genome.wustl.edu	37	2	232653392	232653392	+	Missense_Mutation	SNP	C	C	T			TCGA-A1-A0SP-01A-11D-A099-09	TCGA-A1-A0SP-10A-02D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3ae9617-b6cd-4d98-b631-39bd4afd3c4e	a409caa8-efd1-4fc8-9753-fa253e65c58d	2	232653392	232653392	C	T	SNP	COPS7B	ENST00000350033	human	ensembl	69_37n	+1	known	missense	c.112	p.P38S	1.000	NULL	pfam_PCI_dom,smart_PCI_dom	-	no_errors	COPS7B	HGNC	ENSG00000144524	131	0	0.00	85	43	33.59	-	-	-
CROCC	0	genome.wustl.edu	37	1	17275337	17275337	+	Missense_Mutation	SNP	C	C	T			TCGA-A1-A0SP-01A-11D-A099-09	TCGA-A1-A0SP-10A-02D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3ae9617-b6cd-4d98-b631-39bd4afd3c4e	a409caa8-efd1-4fc8-9753-fa253e65c58d	1	17275337	17275337	C	T	SNP	CROCC	ENST00000375541	human	ensembl	69_37n	+1	known	missense	c.2752	p.R918W	1.000	NULL	superfamily_Prefoldin,superfamily_t-SNARE	-	no_errors	CROCC	HGNC	ENSG00000058453	28	0	0.00	45	8	15.09	-	-	-
CYFIP1	0	genome.wustl.edu	37	15	22947066	22947066	+	Missense_Mutation	SNP	G	G	A			TCGA-A1-A0SP-01A-11D-A099-09	TCGA-A1-A0SP-10A-02D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3ae9617-b6cd-4d98-b631-39bd4afd3c4e	a409caa8-efd1-4fc8-9753-fa253e65c58d	15	22947066	22947066	G	A	SNP	CYFIP1	ENST00000313077	human	ensembl	69_37n	+1	known	missense	c.1339	p.E447K	1.000	pfam_Cytoplasmic_FMR1-int,pirsf_Cytoplasmic_FMR1-int_sub,prints_Cytoplasmic_FMR1-int	pfam_Cytoplasmic_FMR1-int,pirsf_Cytoplasmic_FMR1-int_sub,prints_Cytoplasmic_FMR1-int	-	no_errors	CYFIP1	HGNC	ENSG00000068793	76	0	0.00	195	80	29.09	-	-	-
DNAH17	0	genome.wustl.edu	37	17	76433854	76433854	+	Missense_Mutation	SNP	C	C	T			TCGA-A1-A0SP-01A-11D-A099-09	TCGA-A1-A0SP-10A-02D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3ae9617-b6cd-4d98-b631-39bd4afd3c4e	a409caa8-efd1-4fc8-9753-fa253e65c58d	17	76433854	76433854	C	T	SNP	DNAH17	ENST00000389840	human	ensembl	69_37n	-1	known	missense	c.11884	p.A3962T	1.000	pfam_Dynein_heavy	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_HR1_rho-bd	-	no_errors	DNAH17	HGNC	ENSG00000187775	47	0	0.00	74	33	30.84	-	-	-
DSPP	0	genome.wustl.edu	37	4	88537153	88537153	+	Silent	SNP	T	T	C			TCGA-A1-A0SP-01A-11D-A099-09	TCGA-A1-A0SP-10A-02D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3ae9617-b6cd-4d98-b631-39bd4afd3c4e	a409caa8-efd1-4fc8-9753-fa253e65c58d	4	88537153	88537153	T	C	SNP	DSPP	ENST00000282478	human	ensembl	69_37n	+1	known	silent	c.3339	p.D1113	0.480	NULL	NULL	-	no_errors	DSPP	HGNC	ENSG00000152591	41	0	0.00	182	42	18.75	-	-	-
ENSG00000211459	0	genome.wustl.edu	37	MT	1273	1273	+	RNA	SNP	G	G	A			TCGA-A1-A0SP-01A-11D-A099-09	TCGA-A1-A0SP-10A-02D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3ae9617-b6cd-4d98-b631-39bd4afd3c4e	a409caa8-efd1-4fc8-9753-fa253e65c58d	MT	1273	1273	G	A	SNP	ENSG00000211459	ENST00000389680	human	ensembl	69_37n	+1	known	rna	NULL	NULL	NULL	-	-	-	no_errors	J01415.24	Clone_based_ensembl_gene	ENSG00000211459	31	0	0.00	17	19	52.78	-	-	-
EPPK1	0	genome.wustl.edu	37	8	144947299	144947299	+	Silent	SNP	C	C	T			TCGA-A1-A0SP-01A-11D-A099-09	TCGA-A1-A0SP-10A-02D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3ae9617-b6cd-4d98-b631-39bd4afd3c4e	a409caa8-efd1-4fc8-9753-fa253e65c58d	8	144947299	144947299	C	T	SNP	EPPK1	ENST00000525985	human	ensembl	69_37n	-1	known	silent	c.123	p.R41	0.746	smart_Plectin_repeat	pfam_Plectin_repeat,smart_Plectin_repeat	-	no_errors	EPPK1	HGNC	ENSG00000227184	12	0	0.00	40	11	21.57	-	-	-
FBXW7	0	genome.wustl.edu	37	4	153253808	153253808	+	Frame_Shift_Del	DEL	G	G	-			TCGA-A1-A0SP-01A-11D-A099-09	TCGA-A1-A0SP-10A-02D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3ae9617-b6cd-4d98-b631-39bd4afd3c4e	a409caa8-efd1-4fc8-9753-fa253e65c58d	4	153253808	153253808	G	-	DEL	FBXW7	ENST00000281708	human	ensembl	69_37n	-1	known	frame_shift_del	c.925	p.R309fs	1.000	pfam_F-box_dom_cyclin-like,superfamily_F-box_dom_cyclin-like,smart_F-box_dom_cyclin-like,pfscan_F-box_dom_cyclin-like	pfam_WD40_repeat,pfam_F-box_dom_cyclin-like,superfamily_WD40_repeat_dom,superfamily_F-box_dom_cyclin-like,smart_F-box_dom_cyclin-like,smart_WD40_repeat,prints_G-protein_beta_WD-40_rep,pfscan_F-box_dom_cyclin-like,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	FBXW7	HGNC	ENSG00000109670	100	0	0.00	79	28	25.93	-	-	-
GPATCH8	0	genome.wustl.edu	37	17	42477336	42477336	+	Silent	SNP	C	C	T			TCGA-A1-A0SP-01A-11D-A099-09	TCGA-A1-A0SP-10A-02D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3ae9617-b6cd-4d98-b631-39bd4afd3c4e	a409caa8-efd1-4fc8-9753-fa253e65c58d	17	42477336	42477336	C	T	SNP	GPATCH8	ENST00000591680	human	ensembl	69_37n	-1	known	silent	c.2109	p.E703	0.813	NULL	pfam_G_patch_dom,pfam_Znf_C2H2_jaz,smart_G_patch_dom,pfscan_Znf_C2H2,pfscan_G_patch_dom	-	no_errors	GPATCH8	HGNC	ENSG00000186566	290	0	0.00	100	98	49.49	-	-	-
HRNR	0	genome.wustl.edu	37	1	152185800	152185801	+	Frame_Shift_Del	DEL	AC	AC	-			TCGA-A1-A0SP-01A-11D-A099-09	TCGA-A1-A0SP-10A-02D-A099-09	AC	AC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3ae9617-b6cd-4d98-b631-39bd4afd3c4e	a409caa8-efd1-4fc8-9753-fa253e65c58d	1	152185800	152185801	AC	-	DEL	HRNR	ENST00000368801	human	ensembl	69_37n	-1	known	frame_shift_del	c.8305_8304	p.Q2768fs	0.000:0.000	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2	-	no_errors	HRNR	HGNC	ENSG00000197915	8	0	0.00	6	3	33.33	-	-	-
KCNG4	0	genome.wustl.edu	37	16	84270972	84270972	+	Silent	SNP	G	G	A			TCGA-A1-A0SP-01A-11D-A099-09	TCGA-A1-A0SP-10A-02D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3ae9617-b6cd-4d98-b631-39bd4afd3c4e	a409caa8-efd1-4fc8-9753-fa253e65c58d	16	84270972	84270972	G	A	SNP	KCNG4	ENST00000308251	human	ensembl	69_37n	-1	known	silent	c.120	p.Y40	1.000	NULL	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_Ion_trans_2,superfamily_BTB/POZ_fold,prints_K_chnl,prints_K_chnl_volt-dep_Kv6,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv3	-	no_errors	KCNG4	HGNC	ENSG00000168418	33	0	0.00	44	18	29.03	-	-	-
KCNQ2	0	genome.wustl.edu	37	20	62045493	62045493	+	Missense_Mutation	SNP	A	A	G			TCGA-A1-A0SP-01A-11D-A099-09	TCGA-A1-A0SP-10A-02D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3ae9617-b6cd-4d98-b631-39bd4afd3c4e	a409caa8-efd1-4fc8-9753-fa253e65c58d	20	62045493	62045493	A	G	SNP	KCNQ2	ENST00000354587	human	ensembl	69_37n	-1	known	missense	c.1495	p.F499L	1.000	pfam_K_chnl_volt-dep_KCNQ_C	pfam_K_chnl_volt-dep_KCNQ_C,pfam_Ankyrin-G_BS,pfam_Ion_trans_dom,pfam_Ion_trans_2,prints_K_chnl_volt-dep_KCNQ2,prints_K_chnl_volt-dep_KCNQ,prints_K_chnl	-	no_errors	KCNQ2	HGNC	ENSG00000075043	76	0	0.00	113	46	28.93	-	-	-
KCTD3	0	genome.wustl.edu	37	1	215753269	215753269	+	Missense_Mutation	SNP	C	C	G			TCGA-A1-A0SP-01A-11D-A099-09	TCGA-A1-A0SP-10A-02D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3ae9617-b6cd-4d98-b631-39bd4afd3c4e	a409caa8-efd1-4fc8-9753-fa253e65c58d	1	215753269	215753269	C	G	SNP	KCTD3	ENST00000259154	human	ensembl	69_37n	+1	known	missense	c.553	p.R185G	0.996	NULL	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,superfamily_WD40_repeat_dom,smart_BTB/POZ-like,smart_WD40_repeat,pfscan_BTB/POZ-like	-	no_errors	KCTD3	HGNC	ENSG00000136636	256	0	0.00	191	112	36.96	-	-	-
KIF20B	0	genome.wustl.edu	37	10	91483856	91483856	+	Frame_Shift_Del	DEL	T	T	-			TCGA-A1-A0SP-01A-11D-A099-09	TCGA-A1-A0SP-10A-02D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3ae9617-b6cd-4d98-b631-39bd4afd3c4e	a409caa8-efd1-4fc8-9753-fa253e65c58d	10	91483856	91483856	T	-	DEL	KIF20B	ENST00000416354	human	ensembl	69_37n	+1	known	frame_shift_del	c.1858	p.F620fs	1.000	NULL	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF20B	HGNC	ENSG00000138182	86	0	0.00	10	2	16.67	-	-	-
LRIT3	0	genome.wustl.edu	37	4	110789053	110789053	+	Silent	SNP	C	C	A			TCGA-A1-A0SP-01A-11D-A099-09	TCGA-A1-A0SP-10A-02D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3ae9617-b6cd-4d98-b631-39bd4afd3c4e	a409caa8-efd1-4fc8-9753-fa253e65c58d	4	110789053	110789053	C	A	SNP	LRIT3	ENST00000379920	human	ensembl	69_37n	+1	known	silent	c.711	p.T237	0.971	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Leu-rich_rpt,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	LRIT3	HGNC	ENSG00000183423	91	0	0.00	98	71	42.01	-	-	-
LRRC4B	0	genome.wustl.edu	37	19	51022151	51022151	+	Missense_Mutation	SNP	G	G	T			TCGA-A1-A0SP-01A-11D-A099-09	TCGA-A1-A0SP-10A-02D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3ae9617-b6cd-4d98-b631-39bd4afd3c4e	a409caa8-efd1-4fc8-9753-fa253e65c58d	19	51022151	51022151	G	T	SNP	LRRC4B	ENST00000389201	human	ensembl	69_37n	-1	known	missense	c.819	p.F273L	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	LRRC4B	HGNC	ENSG00000131409	46	0	0.00	103	48	31.79	-	-	-
MT-ATP6	0	genome.wustl.edu	37	MT	9189	9189	+	Nonsense_Mutation	SNP	C	C	A			TCGA-A1-A0SP-01A-11D-A099-09	TCGA-A1-A0SP-10A-02D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3ae9617-b6cd-4d98-b631-39bd4afd3c4e	a409caa8-efd1-4fc8-9753-fa253e65c58d	MT	9189	9189	C	A	SNP	MT-ATP6	ENST00000361899	human	ensembl	69_37n	+1	known	nonsense	c.663	p.Y221*	NULL	pfam_ATPase_F0-cplx_asu,superfamily_ATPase_F0-cplx_asu,prints_ATPase_F0-cplx_asu,tigrfam_ATPase_F0-cplx_asu	pfam_ATPase_F0-cplx_asu,superfamily_ATPase_F0-cplx_asu,prints_ATPase_F0-cplx_asu,tigrfam_ATPase_F0-cplx_asu	-	no_errors	MT-ATP6	HGNC	ENSG00000198899	23	0	0.00	45	14	23.73	-	-	-
MT-CO2	0	genome.wustl.edu	37	MT	7837	7837	+	Silent	SNP	T	T	C			TCGA-A1-A0SP-01A-11D-A099-09	TCGA-A1-A0SP-10A-02D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3ae9617-b6cd-4d98-b631-39bd4afd3c4e	a409caa8-efd1-4fc8-9753-fa253e65c58d	MT	7837	7837	T	C	SNP	MT-CO2	ENST00000361739	human	ensembl	69_37n	+1	known	silent	c.252	p.L84	NULL	superfamily_Cyt_c_oxidase_su2-like_TM_dom,pfscan_Cyt_c_oxidase_su2_TM_dom,prints_Cyt_c_oxidase_su2_C,tigrfam_Cyt_c_oxidase_su2	pfam_Cyt_c_oxidase_su2_C,pfam_Cyt_c_oxidase_su2_TM_dom,superfamily_Cupredoxin,superfamily_Cyt_c_oxidase_su2-like_TM_dom,pfscan_Cyt_c_oxidase_su2_TM_dom,pfscan_Cyt_c_oxidase_su2_C,prints_Cyt_c_oxidase_su2_C,tigrfam_Cyt_c_oxidase_su2	-	no_errors	MT-CO2	HGNC	ENSG00000198712	22	0	0.00	30	17	36.17	-	-	-
MT-ND6	0	genome.wustl.edu	37	MT	14494	14494	+	Silent	SNP	T	T	C			TCGA-A1-A0SP-01A-11D-A099-09	TCGA-A1-A0SP-10A-02D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3ae9617-b6cd-4d98-b631-39bd4afd3c4e	a409caa8-efd1-4fc8-9753-fa253e65c58d	MT	14494	14494	T	C	SNP	MT-ND6	ENST00000361681	human	ensembl	69_37n	-1	known	silent	c.180	p.L60	NULL	pfam_NADH_UbQ/plastoQ_OxRdtase_su6	pfam_NADH_UbQ/plastoQ_OxRdtase_su6	-	no_errors	MT-ND6	HGNC	ENSG00000198695	210	0	0.00	17	3	15.00	-	-	-
MUC12	0	genome.wustl.edu	37	7	100637074	100637074	+	Missense_Mutation	SNP	G	G	A			TCGA-A1-A0SP-01A-11D-A099-09	TCGA-A1-A0SP-10A-02D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3ae9617-b6cd-4d98-b631-39bd4afd3c4e	a409caa8-efd1-4fc8-9753-fa253e65c58d	7	100637074	100637074	G	A	SNP	MUC12	ENST00000379442	human	ensembl	69_37n	+1	known	missense	c.3659	p.R1220H	0.000	NULL	pfam_SEA	-	no_errors	MUC12	HGNC	ENSG00000205277	23	0	0.00	154	27	14.92	-	-	-
MUC12	0	genome.wustl.edu	37	7	100639210	100639211	+	Frame_Shift_Ins	INS	-	-	A			TCGA-A1-A0SP-01A-11D-A099-09	TCGA-A1-A0SP-10A-02D-A099-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3ae9617-b6cd-4d98-b631-39bd4afd3c4e	a409caa8-efd1-4fc8-9753-fa253e65c58d	7	100639210	100639211	-	A	INS	MUC12	ENST00000379442	human	ensembl	69_37n	+1	known	frame_shift_ins	c.5795_5796	p.A1933fs	0.000:0.000	NULL	pfam_SEA	-	no_errors	MUC12	HGNC	ENSG00000205277	48	0	0.00	6	5	45.45	-	-	-
MUC12	0	genome.wustl.edu	37	7	100639217	100639217	+	Frame_Shift_Del	DEL	A	A	-			TCGA-A1-A0SP-01A-11D-A099-09	TCGA-A1-A0SP-10A-02D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3ae9617-b6cd-4d98-b631-39bd4afd3c4e	a409caa8-efd1-4fc8-9753-fa253e65c58d	7	100639217	100639217	A	-	DEL	MUC12	ENST00000379442	human	ensembl	69_37n	+1	known	frame_shift_del	c.5802	p.G1935fs	0.001	NULL	pfam_SEA	-	no_errors	MUC12	HGNC	ENSG00000205277	42	0	0.00	6	5	45.45	-	-	-
NUSAP1	0	genome.wustl.edu	37	15	41669445	41669445	+	Frame_Shift_Del	DEL	A	A	-			TCGA-A1-A0SP-01A-11D-A099-09	TCGA-A1-A0SP-10A-02D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3ae9617-b6cd-4d98-b631-39bd4afd3c4e	a409caa8-efd1-4fc8-9753-fa253e65c58d	15	41669445	41669445	A	-	DEL	NUSAP1	ENST00000559596	human	ensembl	69_37n	+1	known	frame_shift_del	c.1175	p.H392fs	0.004	NULL	NULL	-	no_errors	NUSAP1	HGNC	ENSG00000137804	55	0	0.00	12	2	14.29	-	-	-
PDE6C	0	genome.wustl.edu	37	10	95394645	95394645	+	Missense_Mutation	SNP	A	A	C			TCGA-A1-A0SP-01A-11D-A099-09	TCGA-A1-A0SP-10A-02D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3ae9617-b6cd-4d98-b631-39bd4afd3c4e	a409caa8-efd1-4fc8-9753-fa253e65c58d	10	95394645	95394645	A	C	SNP	PDE6C	ENST00000371447	human	ensembl	69_37n	+1	known	missense	c.1250	p.H417P	1.000	pfam_GAF,smart_GAF	pfam_PDEase_catalytic_dom,pfam_GAF,smart_GAF,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE6C	HGNC	ENSG00000095464	132	0	0.00	113	17	13.08	-	-	-
POU2F2	0	genome.wustl.edu	37	19	42599447	42599447	+	Missense_Mutation	SNP	G	G	T			TCGA-A1-A0SP-01A-11D-A099-09	TCGA-A1-A0SP-10A-02D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3ae9617-b6cd-4d98-b631-39bd4afd3c4e	a409caa8-efd1-4fc8-9753-fa253e65c58d	19	42599447	42599447	G	T	SNP	POU2F2	ENST00000342301	human	ensembl	69_37n	-1	known	missense	c.1122	p.S374R	1.000	NULL	pfam_POU_specific,pfam_Homeodomain,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_POU_specific,smart_Homeodomain,pfscan_Homeodomain,pfscan_POU_specific,prints_POU,prints_TF_octamer	-	no_errors	POU2F2	HGNC	ENSG00000028277	36	0	0.00	27	11	28.95	-	-	-
SLC4A10	0	genome.wustl.edu	37	2	162757469	162757469	+	Missense_Mutation	SNP	G	G	A			TCGA-A1-A0SP-01A-11D-A099-09	TCGA-A1-A0SP-10A-02D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3ae9617-b6cd-4d98-b631-39bd4afd3c4e	a409caa8-efd1-4fc8-9753-fa253e65c58d	2	162757469	162757469	G	A	SNP	SLC4A10	ENST00000446997	human	ensembl	69_37n	+1	known	missense	c.1390	p.E464K	1.000	tigrfam_HCO3_transpt_euk	pfam_HCO3_transpt_C,pfam_HCO3_transpt_cyt,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,prints_Na/HCO3_transpt,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A10	HGNC	ENSG00000144290	150	0	0.00	85	20	19.05	-	-	-
SVEP1	0	genome.wustl.edu	37	9	113170187	113170187	+	Missense_Mutation	SNP	C	C	G			TCGA-A1-A0SP-01A-11D-A099-09	TCGA-A1-A0SP-10A-02D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3ae9617-b6cd-4d98-b631-39bd4afd3c4e	a409caa8-efd1-4fc8-9753-fa253e65c58d	9	113170187	113170187	C	G	SNP	SVEP1	ENST00000401783	human	ensembl	69_37n	-1	known	missense	c.7693	p.G2565R	1.000	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,pfam_EGF-like_dom,pfam_Tyr-kin_ephrin_A/B_rcpt-like,pfam_Hyalin,pfam_VWF_A,pfam_Pentaxin,pfam_EGF_extracell,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl,superfamily_Complement_control_module,superfamily_Growth_fac_rcpt,smart_VWF_A,smart_Sushi_SCR_CCP,smart_EGF-like_Ca-bd,smart_EGF-like,smart_Pentaxin,pfscan_EG-like_dom,pfscan_Hyalin,pfscan_Sushi_SCR_CCP,pfscan_VWF_A,prints_Pentaxin	-	no_errors	SVEP1	HGNC	ENSG00000165124	53	0	0.00	57	25	30.49	-	-	-
TBC1D3P5	0	genome.wustl.edu	37	17	25746626	25746626	+	RNA	SNP	A	A	G			TCGA-A1-A0SP-01A-11D-A099-09	TCGA-A1-A0SP-10A-02D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3ae9617-b6cd-4d98-b631-39bd4afd3c4e	a409caa8-efd1-4fc8-9753-fa253e65c58d	17	25746626	25746626	A	G	SNP	TBC1D3P5	ENST00000581469	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.091	-	-	-	no_errors	TBC1D3P5	HGNC	ENSG00000266433	21	0	0.00	16	15	48.39	-	-	-
THAP7	0	genome.wustl.edu	37	22	21354432	21354432	+	Missense_Mutation	SNP	C	C	T			TCGA-A1-A0SP-01A-11D-A099-09	TCGA-A1-A0SP-10A-02D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3ae9617-b6cd-4d98-b631-39bd4afd3c4e	a409caa8-efd1-4fc8-9753-fa253e65c58d	22	21354432	21354432	C	T	SNP	THAP7	ENST00000215742	human	ensembl	69_37n	-1	known	missense	c.667	p.G223R	0.731	NULL	pfam_Znf_C2CH,smart_Znf_C2CH,pfscan_Znf_C2CH	-	no_errors	THAP7	HGNC	ENSG00000184436	12	0	0.00	17	6	26.09	-	-	-
THBS4	0	genome.wustl.edu	37	5	79375018	79375018	+	Silent	SNP	G	G	A			TCGA-A1-A0SP-01A-11D-A099-09	TCGA-A1-A0SP-10A-02D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3ae9617-b6cd-4d98-b631-39bd4afd3c4e	a409caa8-efd1-4fc8-9753-fa253e65c58d	5	79375018	79375018	G	A	SNP	THBS4	ENST00000350881	human	ensembl	69_37n	+1	known	silent	c.2448	p.T816	0.001	pfam_Thrombospondin_C,superfamily_ConA-like_lec_gl	pfam_Thrombospondin_C,pfam_Thbs/COMP_coiled-coil,pfam_Thrombospondin_3-like_rpt,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl,smart_Laminin_G,smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_EG-like_dom	-	no_errors	THBS4	HGNC	ENSG00000113296	112	0	0.00	67	67	50.00	-	-	-
TP53	0	genome.wustl.edu	37	17	7578382	7578382	+	Nonsense_Mutation	SNP	G	G	C			TCGA-A1-A0SP-01A-11D-A099-09	TCGA-A1-A0SP-10A-02D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3ae9617-b6cd-4d98-b631-39bd4afd3c4e	a409caa8-efd1-4fc8-9753-fa253e65c58d	17	7578382	7578382	G	C	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	nonsense	c.548	p.S183*	0.011	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	54	0	0.00	36	35	49.30	-	-	-
TXNDC16	0	genome.wustl.edu	37	14	52978095	52978095	+	Nonsense_Mutation	SNP	C	C	A			TCGA-A1-A0SP-01A-11D-A099-09	TCGA-A1-A0SP-10A-02D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3ae9617-b6cd-4d98-b631-39bd4afd3c4e	a409caa8-efd1-4fc8-9753-fa253e65c58d	14	52978095	52978095	C	A	SNP	TXNDC16	ENST00000281741	human	ensembl	69_37n	-1	known	nonsense	c.619	p.E207*	0.981	NULL	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold	-	no_errors	TXNDC16	HGNC	ENSG00000087301	153	0	0.00	54	50	48.08	-	-	-
TXNIP	0	genome.wustl.edu	37	1	145440077	145440077	+	Missense_Mutation	SNP	A	A	G			TCGA-A1-A0SP-01A-11D-A099-09	TCGA-A1-A0SP-10A-02D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3ae9617-b6cd-4d98-b631-39bd4afd3c4e	a409caa8-efd1-4fc8-9753-fa253e65c58d	1	145440077	145440077	A	G	SNP	TXNIP	ENST00000369317	human	ensembl	69_37n	+1	known	missense	c.511	p.M171V	1.000	superfamily_Ig_E-set	pfam_Arrestin-like_N,pfam_Arrestin_C-like,superfamily_Ig_E-set	-	no_errors	TXNIP	HGNC	ENSG00000117289	94	0	0.00	63	23	26.74	-	-	-
YEATS4	0	genome.wustl.edu	37	12	69784092	69784093	+	Frame_Shift_Ins	INS	-	-	A			TCGA-A1-A0SP-01A-11D-A099-09	TCGA-A1-A0SP-10A-02D-A099-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3ae9617-b6cd-4d98-b631-39bd4afd3c4e	a409caa8-efd1-4fc8-9753-fa253e65c58d	12	69784092	69784093	-	A	INS	YEATS4	ENST00000247843	human	ensembl	69_37n	+1	known	frame_shift_ins	c.680_681	p.*228fs	0.999:0.960	NULL	pfam_YEATS,pfscan_YEATS	-	no_errors	YEATS4	HGNC	ENSG00000127337	66	0	0.00	10	5	33.33	-	-	-
ZC3H11A	0	genome.wustl.edu	37	1	203798941	203798941	+	Missense_Mutation	SNP	C	C	T			TCGA-A1-A0SP-01A-11D-A099-09	TCGA-A1-A0SP-10A-02D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3ae9617-b6cd-4d98-b631-39bd4afd3c4e	a409caa8-efd1-4fc8-9753-fa253e65c58d	1	203798941	203798941	C	T	SNP	ZC3H11A	ENST00000332127	human	ensembl	69_37n	+1	known	missense	c.536	p.T179I	0.997	NULL	smart_Znf_CCCH	-	no_errors	ZC3H11A	HGNC	ENSG00000058673	100	0	0.00	55	17	23.61	-	-	-
ZMYM3	0	genome.wustl.edu	37	X	70462188	70462188	+	Missense_Mutation	SNP	G	G	C			TCGA-A1-A0SP-01A-11D-A099-09	TCGA-A1-A0SP-10A-02D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3ae9617-b6cd-4d98-b631-39bd4afd3c4e	a409caa8-efd1-4fc8-9753-fa253e65c58d	X	70462188	70462188	G	C	SNP	ZMYM3	ENST00000373988	human	ensembl	69_37n	-1	known	missense	c.3640	p.L1214V	1.000	pfam_DUF3504	pfam_Znf_MYM,pfam_DUF3504,smart_TRASH	-	no_errors	ZMYM3	HGNC	ENSG00000147130	72	0	0.00	90	52	36.62	-	-	-
ZNF687	0	genome.wustl.edu	37	1	151259248	151259248	+	Missense_Mutation	SNP	G	G	A			TCGA-A1-A0SP-01A-11D-A099-09	TCGA-A1-A0SP-10A-02D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3ae9617-b6cd-4d98-b631-39bd4afd3c4e	a409caa8-efd1-4fc8-9753-fa253e65c58d	1	151259248	151259248	G	A	SNP	ZNF687	ENST00000324048	human	ensembl	69_37n	+1	known	missense	c.481	p.D161N	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF687	HGNC	ENSG00000143373	52	0	0.00	33	26	44.07	-	-	-
