Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
ABCB10	0	genome.wustl.edu	37	1	229683401	229683401	+	Missense_Mutation	SNP	G	G	C			TCGA-A2-A0CV-01A-31D-A10Y-09	TCGA-A2-A0CV-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5d1dead5-d9a5-42d3-a703-4c38ad6e8f57	7d4e8176-424e-41d9-ba1c-48feff2d2350	1	229683401	229683401	G	C	SNP	ABCB10	ENST00000344517	human	ensembl	69_37n	-1	known	missense	c.766	p.L256V	0.817	pfam_ABC_transptr_TM_dom,superfamily_ABC_transptrTM_dom_typ1,pfscan_ABC_transporter_type1	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCB10	HGNC	ENSG00000135776	132	0	0.00	119	19	13.77	-	-	-
AHNAK	0	genome.wustl.edu	37	11	62295540	62295540	+	Missense_Mutation	SNP	T	T	C			TCGA-A2-A0CV-01A-31D-A10Y-09	TCGA-A2-A0CV-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5d1dead5-d9a5-42d3-a703-4c38ad6e8f57	7d4e8176-424e-41d9-ba1c-48feff2d2350	11	62295540	62295540	T	C	SNP	AHNAK	ENST00000378024	human	ensembl	69_37n	-1	known	missense	c.6349	p.I2117V	1.000	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK	HGNC	ENSG00000124942	197	0	0.00	287	55	16.08	-	-	-
CARD9	0	genome.wustl.edu	37	9	139266359	139266359	+	Missense_Mutation	SNP	T	T	C			TCGA-A2-A0CV-01A-31D-A10Y-09	TCGA-A2-A0CV-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5d1dead5-d9a5-42d3-a703-4c38ad6e8f57	7d4e8176-424e-41d9-ba1c-48feff2d2350	9	139266359	139266359	T	C	SNP	CARD9	ENST00000371732	human	ensembl	69_37n	-1	known	missense	c.172	p.K58E	1.000	pfam_CARD,superfamily_DEATH-like,pfscan_CARD	pfam_CARD,superfamily_DEATH-like,pfscan_CARD	-	no_errors	CARD9	HGNC	ENSG00000187796	30	0	0.00	46	6	11.54	-	-	-
CMYA5	0	genome.wustl.edu	37	5	79032395	79032395	+	Missense_Mutation	SNP	G	G	A			TCGA-A2-A0CV-01A-31D-A10Y-09	TCGA-A2-A0CV-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5d1dead5-d9a5-42d3-a703-4c38ad6e8f57	7d4e8176-424e-41d9-ba1c-48feff2d2350	5	79032395	79032395	G	A	SNP	CMYA5	ENST00000446378	human	ensembl	69_37n	+1	known	missense	c.7807	p.A2603T	0.007	NULL	pfam_Fibronectin_type3,pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3	-	no_errors	CMYA5	HGNC	ENSG00000164309	120	0	0.00	85	14	14.14	-	-	-
CPT1B	0	genome.wustl.edu	37	22	51008742	51008742	+	Missense_Mutation	SNP	C	C	T			TCGA-A2-A0CV-01A-31D-A10Y-09	TCGA-A2-A0CV-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5d1dead5-d9a5-42d3-a703-4c38ad6e8f57	7d4e8176-424e-41d9-ba1c-48feff2d2350	22	51008742	51008742	C	T	SNP	CPT1B	ENST00000312108	human	ensembl	69_37n	-1	known	missense	c.2122	p.A708T	0.801	pfam_Carn_acyl_trans	pfam_Carn_acyl_trans	-	no_errors	CPT1B	HGNC	ENSG00000205560	66	0	0.00	36	14	28.00	-	-	-
EIF2C2	0	genome.wustl.edu	37	8	141561427	141561427	+	Missense_Mutation	SNP	G	G	A			TCGA-A2-A0CV-01A-31D-A10Y-09	TCGA-A2-A0CV-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5d1dead5-d9a5-42d3-a703-4c38ad6e8f57	7d4e8176-424e-41d9-ba1c-48feff2d2350	8	141561427	141561427	G	A	SNP	EIF2C2	ENST00000220592	human	ensembl	69_37n	-1	known	missense	c.1378	p.R460C	1.000	NULL	pfam_Piwi,pfam_PAZ,pfam_DUF1785,superfamily_RNaseH-like_dom,superfamily_PAZ,smart_PAZ,smart_Piwi,pfscan_PAZ,pfscan_Piwi	-	no_errors	EIF2C2	HGNC	ENSG00000123908	37	0	0.00	40	7	14.89	-	-	-
FAM179B	0	genome.wustl.edu	37	14	45431733	45431733	+	Nonsense_Mutation	SNP	C	C	T			TCGA-A2-A0CV-01A-31D-A10Y-09	TCGA-A2-A0CV-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5d1dead5-d9a5-42d3-a703-4c38ad6e8f57	7d4e8176-424e-41d9-ba1c-48feff2d2350	14	45431733	45431733	C	T	SNP	FAM179B	ENST00000361577	human	ensembl	69_37n	+1	known	nonsense	c.109	p.R37*	0.185	NULL	superfamily_ARM-type_fold	-	no_errors	FAM179B	HGNC	ENSG00000198718	48	0	0.00	33	9	21.43	-	-	-
FAM20C	0	genome.wustl.edu	37	7	299785	299785	+	Missense_Mutation	SNP	G	G	C			TCGA-A2-A0CV-01A-31D-A10Y-09	TCGA-A2-A0CV-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5d1dead5-d9a5-42d3-a703-4c38ad6e8f57	7d4e8176-424e-41d9-ba1c-48feff2d2350	7	299785	299785	G	C	SNP	FAM20C	ENST00000313766	human	ensembl	69_37n	+1	known	missense	c.1594	p.D532H	1.000	pfam_DUF1193	pfam_DUF1193	-	no_errors	FAM20C	HGNC	ENSG00000177706	13	0	0.00	22	8	26.67	-	-	-
GATA3	0	genome.wustl.edu	37	10	8111433	8111434	+	Splice_Site	DEL	CA	CA	-			TCGA-A2-A0CV-01A-31D-A10Y-09	TCGA-A2-A0CV-10A-01D-A110-09	CA	CA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5d1dead5-d9a5-42d3-a703-4c38ad6e8f57	7d4e8176-424e-41d9-ba1c-48feff2d2350	10	8111433	8111434	CA	-	DEL	GATA3	ENST00000379328	human	ensembl	69_37n	+1	known	splice_site_del	c.925-3_925-2	e4-2	1.000:1.000	-	-	-	no_errors	GATA3	HGNC	ENSG00000107485	94	0	0	72	39	35.14	-	-	-
GNE	0	genome.wustl.edu	37	9	36217480	36217480	+	Missense_Mutation	SNP	C	C	T			TCGA-A2-A0CV-01A-31D-A10Y-09	TCGA-A2-A0CV-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5d1dead5-d9a5-42d3-a703-4c38ad6e8f57	7d4e8176-424e-41d9-ba1c-48feff2d2350	9	36217480	36217480	C	T	SNP	GNE	ENST00000396594	human	ensembl	69_37n	-1	known	missense	c.2144	p.R715H	1.000	NULL	pfam_UDP_GlcNAc_Epimerase_2,pfam_ROK,prints_Hexokinase,tigrfam_UDP-GlcNAc_Epase	-	no_errors	GNE	HGNC	ENSG00000159921	118	0	0.00	111	22	16.54	-	-	-
GOLGB1	0	genome.wustl.edu	37	3	121415242	121415242	+	Missense_Mutation	SNP	C	C	A			TCGA-A2-A0CV-01A-31D-A10Y-09	TCGA-A2-A0CV-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5d1dead5-d9a5-42d3-a703-4c38ad6e8f57	7d4e8176-424e-41d9-ba1c-48feff2d2350	3	121415242	121415242	C	A	SNP	GOLGB1	ENST00000340645	human	ensembl	69_37n	-1	known	missense	c.4113	p.Q1371H	0.961	NULL	superfamily_Prefoldin,superfamily_STAT_TF_coiled-coil,smart_Leu_zip_homeo	-	no_errors	GOLGB1	HGNC	ENSG00000173230	166	0	0.00	151	34	18.28	-	-	-
HS2ST1	0	genome.wustl.edu	37	1	87549897	87549897	+	Missense_Mutation	SNP	A	A	G			TCGA-A2-A0CV-01A-31D-A10Y-09	TCGA-A2-A0CV-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5d1dead5-d9a5-42d3-a703-4c38ad6e8f57	7d4e8176-424e-41d9-ba1c-48feff2d2350	1	87549897	87549897	A	G	SNP	HS2ST1	ENST00000370550	human	ensembl	69_37n	+1	known	missense	c.384	p.I128M	1.000	pfam_Sulfotransferase	pfam_Sulfotransferase	-	no_errors	HS2ST1	HGNC	ENSG00000153936	190	1	0.52	119	19	13.77	-	-	-
LRBA	0	genome.wustl.edu	37	4	151223818	151223818	+	Missense_Mutation	SNP	T	T	C			TCGA-A2-A0CV-01A-31D-A10Y-09	TCGA-A2-A0CV-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5d1dead5-d9a5-42d3-a703-4c38ad6e8f57	7d4e8176-424e-41d9-ba1c-48feff2d2350	4	151223818	151223818	T	C	SNP	LRBA	ENST00000357115	human	ensembl	69_37n	-1	known	missense	c.8009	p.Y2670C	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_BEACH_dom,pfam_DUF1088,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_ConA-like_lec_gl,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom	-	no_errors	LRBA	HGNC	ENSG00000198589	191	0	0.00	92	18	16.36	-	-	-
PCDHA12	0	genome.wustl.edu	37	5	140256806	140256806	+	Silent	SNP	G	G	A			TCGA-A2-A0CV-01A-31D-A10Y-09	TCGA-A2-A0CV-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5d1dead5-d9a5-42d3-a703-4c38ad6e8f57	7d4e8176-424e-41d9-ba1c-48feff2d2350	5	140256806	140256806	G	A	SNP	PCDHA12	ENST00000398631	human	ensembl	69_37n	+1	known	silent	c.1749	p.R583	0.000	superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA12	HGNC	ENSG00000251664	78	0	0.00	114	28	19.72	-	-	-
RNA5-8SP6	0	genome.wustl.edu	37	Y	10037843	10037843	+	RNA	SNP	C	C	T			TCGA-A2-A0CV-01A-31D-A10Y-09	TCGA-A2-A0CV-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5d1dead5-d9a5-42d3-a703-4c38ad6e8f57	7d4e8176-424e-41d9-ba1c-48feff2d2350	Y	10037843	10037843	C	T	SNP	RNA5-8SP6	ENST00000515896	human	ensembl	69_37n	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RNA5-8SP6	HGNC	ENSG00000251705	15	0	0.00	25	7	21.88	-	-	-
ROBO1	0	genome.wustl.edu	37	3	78719385	78719385	+	Missense_Mutation	SNP	C	C	G			TCGA-A2-A0CV-01A-31D-A10Y-09	TCGA-A2-A0CV-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5d1dead5-d9a5-42d3-a703-4c38ad6e8f57	7d4e8176-424e-41d9-ba1c-48feff2d2350	3	78719385	78719385	C	G	SNP	ROBO1	ENST00000464233	human	ensembl	69_37n	-1	known	missense	c.1409	p.G470A	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	ROBO1	HGNC	ENSG00000169855	46	0	0.00	59	12	16.90	-	-	-
SNTA1	0	genome.wustl.edu	37	20	31996318	31996318	+	Missense_Mutation	SNP	C	C	A			TCGA-A2-A0CV-01A-31D-A10Y-09	TCGA-A2-A0CV-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5d1dead5-d9a5-42d3-a703-4c38ad6e8f57	7d4e8176-424e-41d9-ba1c-48feff2d2350	20	31996318	31996318	C	A	SNP	SNTA1	ENST00000217381	human	ensembl	69_37n	-1	known	missense	c.1513	p.A505S	1.000	NULL	pfam_PDZ,superfamily_PDZ,smart_Pleckstrin_homology,smart_PDZ,pfscan_PDZ,pfscan_Pleckstrin_homology	-	no_errors	SNTA1	HGNC	ENSG00000101400	109	0	0.00	84	19	18.45	-	-	-
SYT16	0	genome.wustl.edu	37	14	62536500	62536500	+	Missense_Mutation	SNP	G	G	A			TCGA-A2-A0CV-01A-31D-A10Y-09	TCGA-A2-A0CV-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5d1dead5-d9a5-42d3-a703-4c38ad6e8f57	7d4e8176-424e-41d9-ba1c-48feff2d2350	14	62536500	62536500	G	A	SNP	SYT16	ENST00000446982	human	ensembl	69_37n	+1	known	missense	c.703	p.G235R	0.023	NULL	NULL	-	no_errors	SYT16	HGNC	ENSG00000139973	133	0	0.00	117	19	13.97	-	-	-
SYT5	0	genome.wustl.edu	37	19	55690340	55690340	+	Missense_Mutation	SNP	G	G	A			TCGA-A2-A0CV-01A-31D-A10Y-09	TCGA-A2-A0CV-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5d1dead5-d9a5-42d3-a703-4c38ad6e8f57	7d4e8176-424e-41d9-ba1c-48feff2d2350	19	55690340	55690340	G	A	SNP	SYT5	ENST00000354308	human	ensembl	69_37n	-1	known	missense	c.70	p.H24Y	0.568	NULL	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting,prints_Synaptotagmin,prints_C2_dom	-	no_errors	SYT5	HGNC	ENSG00000129990	43	0	0.00	34	6	15.00	-	-	-
TMEM132D	0	genome.wustl.edu	37	12	129569107	129569107	+	Silent	SNP	G	G	A			TCGA-A2-A0CV-01A-31D-A10Y-09	TCGA-A2-A0CV-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5d1dead5-d9a5-42d3-a703-4c38ad6e8f57	7d4e8176-424e-41d9-ba1c-48feff2d2350	12	129569107	129569107	G	A	SNP	TMEM132D	ENST00000422113	human	ensembl	69_37n	-1	known	silent	c.1584	p.I528	0.004	NULL	NULL	-	no_errors	TMEM132D	HGNC	ENSG00000151952	79	0	0.00	73	15	17.05	-	-	-
TTK	0	genome.wustl.edu	37	6	80746264	80746264	+	Missense_Mutation	SNP	G	G	A			TCGA-A2-A0CV-01A-31D-A10Y-09	TCGA-A2-A0CV-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5d1dead5-d9a5-42d3-a703-4c38ad6e8f57	7d4e8176-424e-41d9-ba1c-48feff2d2350	6	80746264	80746264	G	A	SNP	TTK	ENST00000369798	human	ensembl	69_37n	+1	known	missense	c.1997	p.G666E	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	TTK	HGNC	ENSG00000112742	337	0	0.00	178	33	15.64	-	-	-
TUBA1C	0	genome.wustl.edu	37	12	49666122	49666122	+	Missense_Mutation	SNP	G	G	T			TCGA-A2-A0CV-01A-31D-A10Y-09	TCGA-A2-A0CV-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5d1dead5-d9a5-42d3-a703-4c38ad6e8f57	7d4e8176-424e-41d9-ba1c-48feff2d2350	12	49666122	49666122	G	T	SNP	TUBA1C	ENST00000301072	human	ensembl	69_37n	+1	known	missense	c.462	p.M154I	1.000	pfam_Tubulin_FtsZ_GTPase,superfamily_Tubulin_FtsZ_GTPase,smart_Tubulin_FtsZ_GTPase,prints_Alpha_tubulin,prints_Tubulin	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Alpha_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Beta_tubulin,prints_Delta_tubulin	-	no_errors	TUBA1C	HGNC	ENSG00000167553	206	1	0.48	139	31	18.24	-	-	-
VWA3A	0	genome.wustl.edu	37	16	22143005	22143005	+	Missense_Mutation	SNP	G	G	A			TCGA-A2-A0CV-01A-31D-A10Y-09	TCGA-A2-A0CV-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5d1dead5-d9a5-42d3-a703-4c38ad6e8f57	7d4e8176-424e-41d9-ba1c-48feff2d2350	16	22143005	22143005	G	A	SNP	VWA3A	ENST00000299840	human	ensembl	69_37n	+1	known	missense	c.655	p.A219T	0.030	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	VWA3A	HGNC	ENSG00000175267	55	0	0.00	64	14	17.95	-	-	-
