Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
ABCC11	0	genome.wustl.edu	37	16	48209200	48209200	+	Missense_Mutation	SNP	G	G	C			TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	16	48209200	48209200	G	C	SNP	ABCC11	ENST00000356608	human	ensembl	69_37n	-1	known	missense	c.3667	p.Q1223E	1.000	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCC11	HGNC	ENSG00000121270	47	0	0.00	29	12	29.27	-	-	-
ACTN1	0	genome.wustl.edu	37	14	69387787	69387787	+	Silent	SNP	G	G	A			TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	14	69387787	69387787	G	A	SNP	ACTN1	ENST00000394419	human	ensembl	69_37n	-1	known	silent	c.276	p.N92	0.785	pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	pfam_Spectrin_repeat,pfam_CH-domain,pfam_EF-hand_Ca_insen,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_EF_hand_Ca-bd,pfscan_CH-domain,pfscan_EF_HAND_2	-	no_errors	ACTN1	HGNC	ENSG00000072110	200	1	0.50	41	32	43.84	-	-	-
AKAP13	0	genome.wustl.edu	37	15	86198828	86198828	+	Missense_Mutation	SNP	G	G	A			TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	15	86198828	86198828	G	A	SNP	AKAP13	ENST00000361243	human	ensembl	69_37n	+1	known	missense	c.4555	p.E1519K	0.987	NULL	pfam_DH-domain,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_Ankyrin_rpt-contain_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_DH-domain	-	no_errors	AKAP13	HGNC	ENSG00000170776	167	0	0.00	55	23	29.49	-	-	-
ALDH9A1	0	genome.wustl.edu	37	1	165667703	165667703	+	Silent	SNP	G	G	A			TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	1	165667703	165667703	G	A	SNP	ALDH9A1	ENST00000354775	human	ensembl	69_37n	-1	known	silent	c.93	p.V31	0.369	superfamily_Ald_DH/histidinol_DH	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH	-	no_errors	ALDH9A1	HGNC	ENSG00000143149	11	0	0.00	31	8	20.51	-	-	-
ANKRD53	0	genome.wustl.edu	37	2	71211878	71211878	+	Silent	SNP	G	G	A			TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	2	71211878	71211878	G	A	SNP	ANKRD53	ENST00000360589	human	ensembl	69_37n	+1	putative	silent	c.1041	p.S347	0.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD53	HGNC	ENSG00000144031	45	0	0.00	44	7	13.73	-	-	-
C1QB	0	genome.wustl.edu	37	1	22987403	22987403	+	Missense_Mutation	SNP	G	G	A			TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	1	22987403	22987403	G	A	SNP	C1QB	ENST00000314933	human	ensembl	69_37n	+1	known	missense	c.286	p.G96S	1.000	pfam_Collagen	pfam_C1q,pfam_Collagen,superfamily_Tumour_necrosis_fac-like,smart_C1q,pfscan_C1q,prints_C1q	-	no_errors	C1QB	HGNC	ENSG00000173369	48	0	0.00	34	10	22.73	-	-	-
C1orf127	0	genome.wustl.edu	37	1	11017751	11017751	+	Silent	SNP	C	C	T			TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	1	11017751	11017751	C	T	SNP	C1orf127	ENST00000377004	human	ensembl	69_37n	-1	known	silent	c.615	p.L205	1.000	NULL	superfamily_DNA-bd_dom_put	-	no_errors	C1orf127	HGNC	ENSG00000175262	34	0	0.00	22	5	18.52	-	-	-
CAD	0	genome.wustl.edu	37	2	27465222	27465222	+	Missense_Mutation	SNP	G	G	A			TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	2	27465222	27465222	G	A	SNP	CAD	ENST00000264705	human	ensembl	69_37n	+1	known	missense	c.6149	p.G2050E	1.000	pfam_Asp/Orn_carbamoyltranf_P-bd,superfamily_Asp/Orn_carbamoylTrfase,tigrfam_Asp_carbamoyltransf_euk	pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_CarbamoylP_synth_ssu_N,pfam_Asp/Orn_carbamoyltranf_P-bd,pfam_GATASE_1,pfam_Asp_carbamoyltransf_Asp/Orn-bd,pfam_CarbamoylP_synth_lsu_oligo,pfam_CarbamoylP_synth_lsu_N,pfam_ATP-grasp_carboxylate-amine,pfam_MGS-like_dom,pfam_Dala_Dala_lig_C,pfam_Amidohydro_1,superfamily_Asp/Orn_carbamoylTrfase,superfamily_CarbamoylP_synth_lsu_oligo,superfamily_CarbamoylP_synth_ssu_N,superfamily_PreATP-grasp_fold,superfamily_MGS-like_dom,superfamily_Metal-dep_hydrolase_composite,smart_MGS-like_dom,pfscan_ATP-grasp,prints_CbamoylP_synth_lsu_CPSase_dom,prints_Asp_carbamoyltransf_euk,prints_Asp/Orn_carbamoylTrfase,tigrfam_CarbamoylP_synth_lsu,tigrfam_CarbamoylP_synth_ssu,tigrfam_Asp_carbamoyltransf_euk	-	no_errors	CAD	HGNC	ENSG00000084774	42	0	0.00	31	7	18.42	-	-	-
CALN1	0	genome.wustl.edu	37	7	71868340	71868340	+	Silent	SNP	C	C	T			TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	7	71868340	71868340	C	T	SNP	CALN1	ENST00000395275	human	ensembl	69_37n	-1	known	silent	c.15	p.E5	1.000	NULL	pfam_EF-hand,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	CALN1	HGNC	ENSG00000183166	42	0	0.00	7	4	36.36	-	-	-
CATSPER2	0	genome.wustl.edu	37	15	43925010	43925010	+	Frame_Shift_Del	DEL	A	A	-			TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	15	43925010	43925010	A	-	DEL	CATSPER2	ENST00000299989	human	ensembl	69_37n	-1	known	frame_shift_del	c.1301	p.L434fs	0.001	NULL	pfam_Ion_trans_dom	-	no_errors	CATSPER2	HGNC	ENSG00000166762	213	0	0.00	10	2	16.67	-	-	-
CD5	0	genome.wustl.edu	37	11	60885726	60885726	+	Missense_Mutation	SNP	G	G	A			TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	11	60885726	60885726	G	A	SNP	CD5	ENST00000347785	human	ensembl	69_37n	+1	known	missense	c.174	p.M58I	0.000	pfam_Srcr_rcpt,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,prints_Srcr_rcpt,pfscan_Srcr_rcpt	pfam_Srcr_rcpt,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,prints_Tcell_CD5,prints_Srcr_rcpt,pfscan_Srcr_rcpt	-	no_errors	CD5	HGNC	ENSG00000110448	127	0	0.00	44	8	15.38	-	-	-
CDH1	0	genome.wustl.edu	37	16	68846043	68846043	+	Frame_Shift_Del	DEL	C	C	-			TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	16	68846043	68846043	C	-	DEL	CDH1	ENST00000261769	human	ensembl	69_37n	+1	known	frame_shift_del	c.1014	p.P339fs	0.001	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH1	HGNC	ENSG00000039068	243	0	0.00	28	16	35.56	-	-	-
CDKL4	0	genome.wustl.edu	37	2	39417556	39417556	+	Missense_Mutation	SNP	G	G	A			TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	2	39417556	39417556	G	A	SNP	CDKL4	ENST00000378803	human	ensembl	69_37n	-1	known	missense	c.542	p.S181L	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CDKL4	HGNC	ENSG00000205111	123	0	0.00	14	6	30.00	-	-	-
CTNNBL1	0	genome.wustl.edu	37	20	36361374	36361374	+	Missense_Mutation	SNP	C	C	T			TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	20	36361374	36361374	C	T	SNP	CTNNBL1	ENST00000405275	human	ensembl	69_37n	+1	known	missense	c.43	p.R15W	0.840	NULL	pfam_DUF1716_euk,superfamily_ARM-type_fold	-	no_errors	CTNNBL1	HGNC	ENSG00000132792	111	0	0.00	46	11	19.30	-	-	-
CTSG	0	genome.wustl.edu	37	14	25044494	25044494	+	Silent	SNP	C	C	T			TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	14	25044494	25044494	C	T	SNP	CTSG	ENST00000216336	human	ensembl	69_37n	-1	known	silent	c.180	p.L60	0.993	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	CTSG	HGNC	ENSG00000100448	125	0	0.00	68	17	20.00	-	-	-
CYFIP2	0	genome.wustl.edu	37	5	156817668	156817671	+	Frame_Shift_Del	DEL	AAGA	AAGA	-			TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	AAGA	AAGA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	5	156817668	156817671	AAGA	-	DEL	CYFIP2	ENST00000318218	human	ensembl	69_37n	+1	known	frame_shift_del	c.3661_3664	p.K1221fs	1.000:1.000:1.000:1.000	pfam_Cytoplasmic_FMR1-int,pirsf_Cytoplasmic_FMR1-int_sub	pfam_Cytoplasmic_FMR1-int,pirsf_Cytoplasmic_FMR1-int_sub,prints_Cytoplasmic_FMR1-int	-	no_errors	CYFIP2	HGNC	ENSG00000055163	111	0	0.00	63	11	14.67	-	-	-
DBC1	0	genome.wustl.edu	37	9	121929944	121929944	+	Silent	SNP	G	G	A			TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	9	121929944	121929944	G	A	SNP	DBC1	ENST00000265922	human	ensembl	69_37n	-1	known	silent	c.1704	p.S568	0.822	NULL	pfam_MACPF,smart_MACPF	-	no_errors	DBC1	HGNC	ENSG00000078725	39	0	0.00	18	4	18.18	-	-	-
DENND4C	0	genome.wustl.edu	37	9	19361904	19361904	+	Frame_Shift_Del	DEL	A	A	-			TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	9	19361904	19361904	A	-	DEL	DENND4C	ENST00000380437	human	ensembl	69_37n	+1	known	frame_shift_del	c.4612	p.N1538fs	1.000	NULL	pfam_DENN_dom,pfam_dDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	DENND4C	HGNC	ENSG00000137145	182	0	0.00	7	2	22.22	-	-	-
DSPP	0	genome.wustl.edu	37	4	88537234	88537234	+	Silent	SNP	C	C	T			TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	4	88537234	88537234	C	T	SNP	DSPP	ENST00000282478	human	ensembl	69_37n	+1	known	silent	c.3420	p.N1140	0.263	NULL	NULL	-	no_errors	DSPP	HGNC	ENSG00000152591	178	0	0.00	74	9	10.84	-	-	-
ERCC5	0	genome.wustl.edu	37	13	103514694	103514694	+	Missense_Mutation	SNP	G	G	A			TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	13	103514694	103514694	G	A	SNP	ERCC5	ENST00000355739	human	ensembl	69_37n	+1	known	missense	c.1195	p.E399K	0.940	tigrfam_XPGC_DNA_repair	pfam_XPG_DNA_repair_N,pfam_XPG/RAD2_endonuclease,superfamily_5-3_exonuclease_C,smart_XPG_DNA_repair_N,smart_XPG/RAD2_endonuclease,smart_HhH2,prints_XPGC_DNA_repair,prints_XPGC_Rad_DNA_repair,tigrfam_XPGC_DNA_repair	-	no_errors	ERCC5	HGNC	ENSG00000134899	76	0	0.00	16	10	38.46	-	-	-
F11R	0	genome.wustl.edu	37	1	160970527	160970527	+	Missense_Mutation	SNP	G	G	C			TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	1	160970527	160970527	G	C	SNP	F11R	ENST00000436182	human	ensembl	69_37n	-1	known	missense	c.294	p.I98M	0.986	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like	-	no_errors	F11R	HGNC	ENSG00000158769	101	0	0.00	46	9	16.36	-	-	-
FAM120C	0	genome.wustl.edu	37	X	54143207	54143207	+	Missense_Mutation	SNP	C	C	G			TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	X	54143207	54143207	C	G	SNP	FAM120C	ENST00000375180	human	ensembl	69_37n	-1	known	missense	c.2083	p.E695Q	1.000	NULL	NULL	-	no_errors	FAM120C	HGNC	ENSG00000184083	115	0	0.00	14	6	30.00	-	-	-
FAM205A	0	genome.wustl.edu	37	9	34726876	34726876	+	Missense_Mutation	SNP	C	C	T			TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	9	34726876	34726876	C	T	SNP	FAM205A	ENST00000378788	human	ensembl	69_37n	-1	novel	missense	c.361	p.E121K	0.828	NULL	NULL	-	no_errors	FAM205A	HGNC	ENSG00000205108	37	0	0.00	8	4	33.33	-	-	-
FUBP1	0	genome.wustl.edu	37	1	78444657	78444657	+	Missense_Mutation	SNP	G	G	T			TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	1	78444657	78444657	G	T	SNP	FUBP1	ENST00000436586	human	ensembl	69_37n	-1	known	missense	c.32	p.S11Y	0.117	NULL	pfam_KH_dom_type_1,pfam_KH_dom_type_2,pfam_DUF1897,smart_KH_dom,pfscan_KH_dom_type_1	-	no_errors	FUBP1	HGNC	ENSG00000162613	62	0	0.00	44	7	13.73	-	-	-
GLCE	0	genome.wustl.edu	37	15	69561032	69561032	+	Frame_Shift_Del	DEL	A	A	-			TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	15	69561032	69561032	A	-	DEL	GLCE	ENST00000261858	human	ensembl	69_37n	+1	known	frame_shift_del	c.1303	p.K435fs	0.999	pfam_C5-epim	pfam_C5-epim	-	no_errors	GLCE	HGNC	ENSG00000138604	67	0	0.00	17	2	10.53	-	-	-
GRIA3	0	genome.wustl.edu	37	X	122551281	122551281	+	Missense_Mutation	SNP	C	C	G			TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	X	122551281	122551281	C	G	SNP	GRIA3	ENST00000264357	human	ensembl	69_37n	+1	known	missense	c.1529	p.T510S	1.000	pfam_SBP_bac_3,smart_Iontro_glu_rcpt	pfam_Iontro_glu_rcpt,pfam_ANF_lig-bd_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIA3	HGNC	ENSG00000125675	171	0	0.00	33	8	19.51	-	-	-
HYDIN	0	genome.wustl.edu	37	16	70891628	70891628	+	Missense_Mutation	SNP	T	T	C			TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	16	70891628	70891628	T	C	SNP	HYDIN	ENST00000316490	human	ensembl	69_37n	-1	known	missense	c.12272	p.N4091S	1.000	NULL	superfamily_PapD-like	-	no_errors	HYDIN	HGNC	ENSG00000157423	502	1	0.20	91	11	10.78	-	-	-
ITPKB	0	genome.wustl.edu	37	1	226836376	226836376	+	Missense_Mutation	SNP	C	C	T			TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	1	226836376	226836376	C	T	SNP	ITPKB	ENST00000272117	human	ensembl	69_37n	-1	known	missense	c.2029	p.A677T	1.000	NULL	pfam_IPK	-	no_errors	ITPKB	HGNC	ENSG00000143772	166	0	0.00	65	8	10.96	-	-	-
KIAA1984	0	genome.wustl.edu	37	9	139699835	139699835	+	Missense_Mutation	SNP	G	G	A			TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	9	139699835	139699835	G	A	SNP	KIAA1984	ENST00000338005	human	ensembl	69_37n	+1	known	missense	c.874	p.E292K	0.010	NULL	NULL	-	no_errors	KIAA1984	HGNC	ENSG00000213213	83	0	0.00	57	15	20.83	-	-	-
KIAA1984	0	genome.wustl.edu	37	9	139700996	139700996	+	Missense_Mutation	SNP	G	G	C			TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	9	139700996	139700996	G	C	SNP	KIAA1984	ENST00000338005	human	ensembl	69_37n	+1	known	missense	c.1150	p.E384Q	0.850	NULL	NULL	-	no_errors	KIAA1984	HGNC	ENSG00000213213	41	0	0.00	29	10	25.64	-	-	-
MAGEC3	0	genome.wustl.edu	37	X	140969318	140969318	+	Missense_Mutation	SNP	C	C	G			TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	X	140969318	140969318	C	G	SNP	MAGEC3	ENST00000298296	human	ensembl	69_37n	+1	known	missense	c.645	p.I215M	0.000	pfam_MAGE,pfscan_MAGE	pfam_MAGE,pfscan_MAGE	-	no_errors	MAGEC3	HGNC	ENSG00000165509	188	0	0.00	22	6	21.43	-	-	-
MAP3K1	0	genome.wustl.edu	37	5	56178672	56178673	+	Frame_Shift_Ins	INS	-	-	A			TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	5	56178672	56178673	-	A	INS	MAP3K1	ENST00000399503	human	ensembl	69_37n	+1	novel	frame_shift_ins	c.3645_3646	p.I1215fs	0.977:0.997	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_RING,pfscan_Znf_SWIM,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K1	HGNC	ENSG00000095015	82	0	0.00	12	6	33.33	-	-	-
MINPP1	0	genome.wustl.edu	37	10	89311854	89311854	+	Frame_Shift_Del	DEL	T	T	-			TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	10	89311854	89311854	T	-	DEL	MINPP1	ENST00000371996	human	ensembl	69_37n	+1	known	frame_shift_del	c.1083	p.S362fs	0.991	pfam_His_Pase_superF_clade-2,pirsf_Histidine_acid_Pase_euk	pfam_His_Pase_superF_clade-2,pirsf_Histidine_acid_Pase_euk	-	no_errors	MINPP1	HGNC	ENSG00000107789	148	0	0.00	11	2	15.38	-	-	-
MUC5B	0	genome.wustl.edu	37	11	1254322	1254322	+	Silent	SNP	G	G	A			TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	11	1254322	1254322	G	A	SNP	MUC5B	ENST00000447027	human	ensembl	69_37n	+1	known	silent	c.2154	p.L718	0.979	pfam_TIL_dom,superfamily_TIL_dom	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC5B	HGNC	ENSG00000117983	33	0	0.00	33	18	35.29	-	-	-
MXRA5	0	genome.wustl.edu	37	X	3242309	3242309	+	Missense_Mutation	SNP	C	C	T			TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	X	3242309	3242309	C	T	SNP	MXRA5	ENST00000217939	human	ensembl	69_37n	-1	known	missense	c.1417	p.G473S	0.049	NULL	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	MXRA5	HGNC	ENSG00000101825	75	0	0.00	29	6	17.14	-	-	-
MYH1	0	genome.wustl.edu	37	17	10408307	10408307	+	Silent	SNP	A	A	G			TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	17	10408307	10408307	A	G	SNP	MYH1	ENST00000226207	human	ensembl	69_37n	-1	known	silent	c.2511	p.Y837	1.000	NULL	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_Prefoldin,superfamily_tRNA-bd_arm,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH1	HGNC	ENSG00000109061	331	0	0.00	18	7	28.00	-	-	-
NAV2	0	genome.wustl.edu	37	11	19967967	19967967	+	Frame_Shift_Del	DEL	C	C	-			TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	11	19967967	19967967	C	-	DEL	NAV2	ENST00000396087	human	ensembl	69_37n	+1	known	frame_shift_del	c.2236	p.R746fs	1.000	NULL	pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,smart_AAA+_ATPase,pfscan_CH-domain	-	no_errors	NAV2	HGNC	ENSG00000166833	97	0	0.00	16	2	11.11	-	-	-
NOLC1	0	genome.wustl.edu	37	10	103920079	103920079	+	Missense_Mutation	SNP	G	G	C			TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	10	103920079	103920079	G	C	SNP	NOLC1	ENST00000405356	human	ensembl	69_37n	+1	known	missense	c.1108	p.E370Q	0.995	NULL	pfam_SRP40_C,pfscan_LisH_dimerisation	-	no_errors	NOLC1	HGNC	ENSG00000166197	95	0	0.00	14	4	22.22	-	-	-
NPC1	0	genome.wustl.edu	37	18	21114508	21114508	+	Missense_Mutation	SNP	C	C	T			TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	18	21114508	21114508	C	T	SNP	NPC1	ENST00000269228	human	ensembl	69_37n	-1	known	missense	c.3493	p.V1165M	1.000	pfam_Patched,tigrfam_NP_C_type	pfam_Patched,pfam_MMPL-typ,pfscan_SSD,tigrfam_NP_C_type	-	no_errors	NPC1	HGNC	ENSG00000141458	55	0	0.00	49	19	27.94	-	-	-
NUP214	0	genome.wustl.edu	37	9	134015982	134015982	+	Frame_Shift_Del	DEL	A	A	-			TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	9	134015982	134015982	A	-	DEL	NUP214	ENST00000451030	human	ensembl	69_37n	+1	known	frame_shift_del	c.1179	p.T394fs	0.998	NULL	smart_WD40_repeat	-	no_errors	NUP214	HGNC	ENSG00000126883	277	0	0.00	12	2	14.29	-	-	-
OR52N5	0	genome.wustl.edu	37	11	5799613	5799613	+	Silent	SNP	G	G	A			TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	11	5799613	5799613	G	A	SNP	OR52N5	ENST00000317093	human	ensembl	69_37n	-1	known	silent	c.252	p.T84	0.003	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	-	no_errors	OR52N5	HGNC	ENSG00000181009	72	0	0.00	8	7	46.67	-	-	-
OR7A5	0	genome.wustl.edu	37	19	14938475	14938475	+	Frame_Shift_Del	DEL	A	A	-			TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	19	14938475	14938475	A	-	DEL	OR7A5	ENST00000322301	human	ensembl	69_37n	-1	known	frame_shift_del	c.579	p.N195fs	0.003	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR7A5	HGNC	ENSG00000188269	81	0	0.00	11	2	15.38	-	-	-
PKD1	0	genome.wustl.edu	37	16	2159446	2159446	+	Nonsense_Mutation	SNP	G	G	A			TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	16	2159446	2159446	G	A	SNP	PKD1	ENST00000262304	human	ensembl	69_37n	-1	known	nonsense	c.5722	p.Q1908*	0.002	pfam_PKD_dom,superfamily_PKD_dom,smart_PKD/Chitinase_dom,tigrfam_Polycystin_cat	pfam_PKD_dom,pfam_PKD1_2_channel,pfam_PKD/REJ-like,pfam_LipOase_LH2,pfam_C-type_lectin,pfam_WSC_carb-bd,pfam_GPS_dom,superfamily_C-type_lectin_fold,superfamily_Lipase_LipOase,superfamily_PKD_dom,superfamily_Fe_hydrogenase,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_WSC_carb-bd_subgr,smart_PKD/Chitinase_dom,smart_C-type_lectin,smart_GPS_dom,smart_LipOase_LH2,pfscan_GPS_dom,pfscan_C-type_lectin,pfscan_PKD_dom,pfscan_LipOase_LH2,pfscan_REJ-like,pfscan_WSC_carb-bd,prints_PKD_1,tigrfam_Polycystin_cat	-	no_errors	PKD1	HGNC	ENSG00000008710	13	0	0.00	16	4	20.00	-	-	-
PLXNA2	0	genome.wustl.edu	37	1	208255805	208255805	+	Missense_Mutation	SNP	C	C	T			TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	1	208255805	208255805	C	T	SNP	PLXNA2	ENST00000367033	human	ensembl	69_37n	-1	known	missense	c.2347	p.V783M	1.000	NULL	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semaphorin/CD100_Ag,pfam_IPT_TIG_rcpt,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_IPT_TIG_rcpt,pfscan_Semaphorin/CD100_Ag	-	no_errors	PLXNA2	HGNC	ENSG00000076356	89	0	0.00	53	9	14.52	-	-	-
PPP4C	0	genome.wustl.edu	37	16	30094768	30094768	+	Missense_Mutation	SNP	G	G	C			TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	16	30094768	30094768	G	C	SNP	PPP4C	ENST00000279387	human	ensembl	69_37n	+1	known	missense	c.357	p.Q119H	1.000	pfam_Metallo_PEstase_dom,smart_Ser/Thr-sp_prot-phosphatase,prints_Ser/Thr-sp_prot-phosphatase	pfam_Metallo_PEstase_dom,smart_Ser/Thr-sp_prot-phosphatase,prints_Ser/Thr-sp_prot-phosphatase	-	no_errors	PPP4C	HGNC	ENSG00000149923	58	0	0.00	64	34	34.69	-	-	-
PTDSS2	0	genome.wustl.edu	37	11	489482	489482	+	Missense_Mutation	SNP	C	C	T			TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	11	489482	489482	C	T	SNP	PTDSS2	ENST00000308020	human	ensembl	69_37n	+1	known	missense	c.937	p.R313C	1.000	pfam_PSS	pfam_PSS	-	no_errors	PTDSS2	HGNC	ENSG00000174915	38	0	0.00	35	10	22.22	-	-	-
PTENP1	0	genome.wustl.edu	37	9	33675365	33675365	+	RNA	DEL	A	A	-			TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	9	33675365	33675365	A	-	DEL	PTENP1	ENST00000532280	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.998	-	-	-	no_errors	PTENP1	HGNC	ENSG00000237984	16	0	0.00	4	2	33.33	-	-	-
RIMBP2	0	genome.wustl.edu	37	12	130892283	130892283	+	Silent	SNP	G	G	A			TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	12	130892283	130892283	G	A	SNP	RIMBP2	ENST00000261655	human	ensembl	69_37n	-1	known	silent	c.2913	p.N971	0.999	pfam_SH3_2,pfam_SH3_domain,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	pfam_SH3_2,pfam_SH3_domain,superfamily_SH3_domain,superfamily_Fibronectin_type3,smart_SH3_domain,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_SH3_domain,prints_SH3_domain	-	no_errors	RIMBP2	HGNC	ENSG00000060709	125	0	0.00	53	11	17.19	-	-	-
RNF216P1	0	genome.wustl.edu	37	7	5024587	5024587	+	RNA	SNP	G	G	A			TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	7	5024587	5024587	G	A	SNP	RNF216P1	ENST00000403969	human	ensembl	69_37n	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RNF216P1	HGNC	ENSG00000196204	121	0	0.00	35	9	20.45	-	-	-
RORB	0	genome.wustl.edu	37	9	77300402	77300402	+	Silent	SNP	C	C	T			TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	9	77300402	77300402	C	T	SNP	RORB	ENST00000396204	human	ensembl	69_37n	+1	known	silent	c.1281	p.I427	1.000	pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Nucl_hrmn_rcpt_lig-bd_core,prints_Str_hrmn_rcpt	pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_ROR_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_ThyrH_rcpt	-	no_errors	RORB	HGNC	ENSG00000198963	116	0	0.00	27	4	12.90	-	-	-
SAMD3	0	genome.wustl.edu	37	6	130497064	130497064	+	Frame_Shift_Del	DEL	T	T	-			TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	6	130497064	130497064	T	-	DEL	SAMD3	ENST00000368134	human	ensembl	69_37n	-1	known	frame_shift_del	c.744	p.K248fs	1.000	NULL	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	SAMD3	HGNC	ENSG00000164483	263	0	0.00	9	2	18.18	-	-	-
SPTY2D1	0	genome.wustl.edu	37	11	18636609	18636609	+	Silent	SNP	G	G	A			TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	11	18636609	18636609	G	A	SNP	SPTY2D1	ENST00000336349	human	ensembl	69_37n	-1	known	silent	c.1212	p.S404	0.681	NULL	pfam_Chromatin_SPT2,smart_Chromatin_SPT2	-	no_errors	SPTY2D1	HGNC	ENSG00000179119	27	0	0.00	19	5	20.83	-	-	-
STAC3	0	genome.wustl.edu	37	12	57638000	57638000	+	Missense_Mutation	SNP	G	G	A			TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	12	57638000	57638000	G	A	SNP	STAC3	ENST00000557176	human	ensembl	69_37n	-1	known	missense	c.242	p.S81L	0.715	NULL	NULL	-	no_errors	STAC3	HGNC	ENSG00000185482	120	1	0.83	44	15	25.42	-	-	-
TAS2R30	0	genome.wustl.edu	37	12	11286524	11286524	+	Frame_Shift_Del	DEL	A	A	-			TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	12	11286524	11286524	A	-	DEL	TAS2R30	ENST00000539585	human	ensembl	69_37n	-1	known	frame_shift_del	c.320	p.L107fs	0.622	pfam_TAS2_rcpt	pfam_TAS2_rcpt	-	no_errors	TAS2R30	HGNC	ENSG00000256188	142	0	0.00	7	2	22.22	-	-	-
TMEM104	0	genome.wustl.edu	37	17	72786402	72786402	+	Missense_Mutation	SNP	G	G	A			TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	17	72786402	72786402	G	A	SNP	TMEM104	ENST00000335464	human	ensembl	69_37n	+1	known	missense	c.313	p.E105K	1.000	NULL	pfam_AA_transpt_TM	-	no_errors	TMEM104	HGNC	ENSG00000109066	74	0	0.00	46	6	11.54	-	-	-
TMEM141	0	genome.wustl.edu	37	9	139686770	139686770	+	Silent	SNP	C	C	G			TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	9	139686770	139686770	C	G	SNP	TMEM141	ENST00000290079	human	ensembl	69_37n	+1	known	silent	c.273	p.L91	1.000	NULL	NULL	-	no_errors	TMEM141	HGNC	ENSG00000244187	84	0	0.00	37	8	17.78	-	-	-
TRAPPC2L	0	genome.wustl.edu	37	16	88926159	88926159	+	Splice_Site	SNP	G	G	A			TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	16	88926159	88926159	G	A	SNP	TRAPPC2L	ENST00000301021	human	ensembl	69_37n	+1	known	splice_site	c.294+1	e3+1	1.000	-	-	-	no_errors	TRAPPC2L	HGNC	ENSG00000167515	165	0	0.00	25	6	19.35	-	-	-
TRMT2A	0	genome.wustl.edu	37	22	20102144	20102144	+	Missense_Mutation	SNP	C	C	T			TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	22	20102144	20102144	C	T	SNP	TRMT2A	ENST00000252136	human	ensembl	69_37n	-1	known	missense	c.1186	p.D396N	1.000	NULL	pfam_U5_MeTrfase,pfam_PCMT,pfam_Small_mtfrase_dom,pfam_RNA_methylase_dom,pfam_RNA_MeTrfase_RsmD,pfam_Methyltransf_11,pfam_tRNA_(Gua-N-7)_MeTrfase,pfam_UbiE/COQ5_MeTrFase,pfscan_RRM_dom	-	no_errors	TRMT2A	HGNC	ENSG00000099899	79	0	0.00	34	19	35.85	-	-	-
TXNIP	0	genome.wustl.edu	37	1	145439000	145439000	+	Silent	SNP	T	T	C			TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	1	145439000	145439000	T	C	SNP	TXNIP	ENST00000369317	human	ensembl	69_37n	+1	known	silent	c.198	p.T66	0.829	pfam_Arrestin-like_N,superfamily_Ig_E-set	pfam_Arrestin-like_N,pfam_Arrestin_C-like,superfamily_Ig_E-set	-	no_errors	TXNIP	HGNC	ENSG00000117289	142	0	0.00	70	37	34.58	-	-	-
UBA6	0	genome.wustl.edu	37	4	68529634	68529634	+	Frame_Shift_Del	DEL	T	T	-			TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	4	68529634	68529634	T	-	DEL	UBA6	ENST00000322244	human	ensembl	69_37n	-1	known	frame_shift_del	c.929	p.K310fs	0.998	superfamily_Molybdenum_cofac_synth_MoeB,tigrfam_UBQ-activ_enz_E1	pfam_ThiF_NAD_FAD-bd,pfam_Ub-activating_enz_e1_C,pfam_UBact_repeat,pfam_Ubiquitin-activating_enzyme,superfamily_Molybdenum_cofac_synth_MoeB,prints_UBQ/SUMO-activ_enz_E1-like,tigrfam_UBQ-activ_enz_E1	-	no_errors	UBA6	HGNC	ENSG00000033178	212	0	0.00	5	2	28.57	-	-	-
UBOX5	0	genome.wustl.edu	37	20	3096074	3096074	+	Missense_Mutation	SNP	C	C	T			TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	20	3096074	3096074	C	T	SNP	UBOX5	ENST00000217173	human	ensembl	69_37n	-1	known	missense	c.1294	p.E432K	1.000	NULL	pfam_Ubox_domain,smart_Ubox_domain,pfscan_Znf_RING	-	no_errors	UBOX5	HGNC	ENSG00000185019	52	0	0.00	49	11	18.33	-	-	-
URB1	0	genome.wustl.edu	37	21	33744886	33744886	+	Frame_Shift_Del	DEL	G	G	-			TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	21	33744886	33744886	G	-	DEL	URB1	ENST00000382751	human	ensembl	69_37n	-1	known	frame_shift_del	c.931	p.L311fs	1.000	pfam_Npa1_N	pfam_Npa1_N,superfamily_ARM-type_fold	-	no_errors	URB1	HGNC	ENSG00000142207	113	0	0.00	15	2	11.76	-	-	-
ZDHHC20	0	genome.wustl.edu	37	13	21955625	21955625	+	Silent	SNP	G	G	A			TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	13	21955625	21955625	G	A	SNP	ZDHHC20	ENST00000400590	human	ensembl	69_37n	-1	known	silent	c.1008	p.D336	0.996	NULL	pfam_Znf_DHHC_palmitoyltrfase,pfscan_Znf_DHHC_palmitoyltrfase	-	no_errors	ZDHHC20	HGNC	ENSG00000180776	273	0	0.00	34	8	19.05	-	-	-
ZNFX1	0	genome.wustl.edu	37	20	47882678	47882678	+	Silent	SNP	G	G	A			TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	20	47882678	47882678	G	A	SNP	ZNFX1	ENST00000371752	human	ensembl	69_37n	-1	known	silent	c.1996	p.L666	1.000	NULL	superfamily_ARM-type_fold,smart_Znf_NFX1	-	no_errors	ZNFX1	HGNC	ENSG00000124201	136	0	0.00	7	4	36.36	-	-	-
