Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
CABIN1	0	genome.wustl.edu	37	22	24573575	24573575	+	Silent	SNP	C	C	T			TCGA-A2-A0YL-01A-21D-A10G-09	TCGA-A2-A0YL-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3cc80b41-603d-4735-85c7-71f540dc6e5c	f570e581-5f15-4113-93d7-a4bbeb7ec394	22	24573575	24573575	C	T	SNP	CABIN1	ENST00000263119	human	ensembl	69_37n	+1	known	silent	c.6309	p.A2103	0.970	NULL	pfam_MEF2_binding,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	CABIN1	HGNC	ENSG00000099991	48	0	0.00	33	6	15.38	-	-	-
EIF5	0	genome.wustl.edu	37	14	103803097	103803097	+	Missense_Mutation	SNP	C	C	T			TCGA-A2-A0YL-01A-21D-A10G-09	TCGA-A2-A0YL-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3cc80b41-603d-4735-85c7-71f540dc6e5c	f570e581-5f15-4113-93d7-a4bbeb7ec394	14	103803097	103803097	C	T	SNP	EIF5	ENST00000216554	human	ensembl	69_37n	+1	known	missense	c.238	p.H80Y	1.000	pfam_Transl_init_fac_IF2/IF5,superfamily_Transl_init_fac_IF2/IF5_N,smart_Transl_init_fac_IF2/IF5	pfam_Transl_init_fac_IF2/IF5,pfam_W2_domain,superfamily_ARM-type_fold,superfamily_Transl_init_fac_IF2/IF5_N,superfamily_Transl_init_fac_IF2/IF5_Zn-bd,smart_Transl_init_fac_IF2/IF5,smart_W2_domain	-	no_errors	EIF5	HGNC	ENSG00000100664	174	0	0.00	165	19	10.27	-	-	-
ETNK2	0	genome.wustl.edu	37	1	204103702	204103702	+	Missense_Mutation	SNP	G	G	C			TCGA-A2-A0YL-01A-21D-A10G-09	TCGA-A2-A0YL-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3cc80b41-603d-4735-85c7-71f540dc6e5c	f570e581-5f15-4113-93d7-a4bbeb7ec394	1	204103702	204103702	G	C	SNP	ETNK2	ENST00000367201	human	ensembl	69_37n	-1	known	missense	c.1135	p.L379V	1.000	NULL	pfam_Choline/ethanolamine_kinase,pfam_Aminoglycoside_PTrfase,superfamily_Kinase-like_dom	-	no_errors	ETNK2	HGNC	ENSG00000143845	99	0	0.00	82	10	10.87	-	-	-
FAM50A	0	genome.wustl.edu	37	X	153674859	153674859	+	Silent	SNP	C	C	T			TCGA-A2-A0YL-01A-21D-A10G-09	TCGA-A2-A0YL-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3cc80b41-603d-4735-85c7-71f540dc6e5c	f570e581-5f15-4113-93d7-a4bbeb7ec394	X	153674859	153674859	C	T	SNP	FAM50A	ENST00000393600	human	ensembl	69_37n	+1	known	silent	c.393	p.G131	0.000	pfam_XAP5	pfam_XAP5	-	no_errors	FAM50A	HGNC	ENSG00000071859	160	0	0.00	106	21	16.54	-	-	-
GABRE	0	genome.wustl.edu	37	X	151128423	151128423	+	Silent	SNP	G	G	A			TCGA-A2-A0YL-01A-21D-A10G-09	TCGA-A2-A0YL-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3cc80b41-603d-4735-85c7-71f540dc6e5c	f570e581-5f15-4113-93d7-a4bbeb7ec394	X	151128423	151128423	G	A	SNP	GABRE	ENST00000370328	human	ensembl	69_37n	-1	known	silent	c.672	p.I224	0.249	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAA_rcpt,prints_GABAAe_rcpt,prints_GABAAa_rcpt,prints_Neur_channel,prints_GABBAg_rcpt,tigrfam_Neur_channel	-	no_errors	GABRE	HGNC	ENSG00000102287	178	0	0.00	178	20	10.00	-	-	-
HSD17B10	0	genome.wustl.edu	37	X	53460760	53460760	+	Missense_Mutation	SNP	C	C	T			TCGA-A2-A0YL-01A-21D-A10G-09	TCGA-A2-A0YL-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3cc80b41-603d-4735-85c7-71f540dc6e5c	f570e581-5f15-4113-93d7-a4bbeb7ec394	X	53460760	53460760	C	T	SNP	HSD17B10	ENST00000168216	human	ensembl	69_37n	-1	known	missense	c.101	p.G34E	1.000	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,prints_DHB_DH	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR,prints_ADH_insect,prints_DHB_DH	-	no_errors	HSD17B10	HGNC	ENSG00000072506	43	0	0.00	29	7	19.44	-	-	-
ILK	0	genome.wustl.edu	37	11	6631001	6631001	+	Missense_Mutation	SNP	G	G	A			TCGA-A2-A0YL-01A-21D-A10G-09	TCGA-A2-A0YL-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3cc80b41-603d-4735-85c7-71f540dc6e5c	f570e581-5f15-4113-93d7-a4bbeb7ec394	11	6631001	6631001	G	A	SNP	ILK	ENST00000299421	human	ensembl	69_37n	+1	known	missense	c.903	p.M301I	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Integrin-linked_kinase,pfscan_Prot_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ankyrin_rpt,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Integrin-linked_kinase,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	ILK	HGNC	ENSG00000166333	101	0	0.00	75	18	19.35	-	-	-
MAP2	0	genome.wustl.edu	37	2	210574677	210574677	+	Nonsense_Mutation	SNP	C	C	G			TCGA-A2-A0YL-01A-21D-A10G-09	TCGA-A2-A0YL-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3cc80b41-603d-4735-85c7-71f540dc6e5c	f570e581-5f15-4113-93d7-a4bbeb7ec394	2	210574677	210574677	C	G	SNP	MAP2	ENST00000360351	human	ensembl	69_37n	+1	known	nonsense	c.4772	p.S1591*	1.000	NULL	pfam_MAP2_projctn,pfam_Tau/MAP_tubulin-bd_rpt	-	no_errors	MAP2	HGNC	ENSG00000078018	155	0	0.00	107	12	10.08	-	-	-
MSX2	0	genome.wustl.edu	37	5	174156269	174156269	+	Nonsense_Mutation	SNP	C	C	T			TCGA-A2-A0YL-01A-21D-A10G-09	TCGA-A2-A0YL-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3cc80b41-603d-4735-85c7-71f540dc6e5c	f570e581-5f15-4113-93d7-a4bbeb7ec394	5	174156269	174156269	C	T	SNP	MSX2	ENST00000239243	human	ensembl	69_37n	+1	known	nonsense	c.487	p.Q163*	1.000	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_Homeobox_metazoa	-	no_errors	MSX2	HGNC	ENSG00000120149	82	0	0.00	52	11	17.19	-	-	-
PIK3CA	0	genome.wustl.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G			TCGA-A2-A0YL-01A-21D-A10G-09	TCGA-A2-A0YL-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3cc80b41-603d-4735-85c7-71f540dc6e5c	f570e581-5f15-4113-93d7-a4bbeb7ec394	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	+1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	108	0	0.00	110	17	13.39	-	-	-
RGS7	0	genome.wustl.edu	37	1	240976995	240976995	+	Silent	SNP	G	G	A			TCGA-A2-A0YL-01A-21D-A10G-09	TCGA-A2-A0YL-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3cc80b41-603d-4735-85c7-71f540dc6e5c	f570e581-5f15-4113-93d7-a4bbeb7ec394	1	240976995	240976995	G	A	SNP	RGS7	ENST00000407727	human	ensembl	69_37n	-1	known	silent	c.879	p.Y293	0.963	pfam_G-protein_gamma-like_dom,superfamily_G-protein_gamma-like_dom,smart_G-protein_gamma-like_dom	pfam_Regulat_G_prot_signal,pfam_G-protein_gamma-like_dom,pfam_DEP_dom,superfamily_Regulat_G_prot_signal_superfam,superfamily_G-protein_gamma-like_dom,smart_DEP_dom,smart_G-protein_gamma-like_dom,smart_Regulat_G_prot_signal,pfscan_DEP_dom,pfscan_Regulat_G_prot_signal,prints_Regulat_G_prot_signal	-	no_errors	RGS7	HGNC	ENSG00000182901	179	0	0.00	122	51	29.31	-	-	-
TRPM2	0	genome.wustl.edu	37	21	45833784	45833784	+	Silent	SNP	C	C	T			TCGA-A2-A0YL-01A-21D-A10G-09	TCGA-A2-A0YL-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3cc80b41-603d-4735-85c7-71f540dc6e5c	f570e581-5f15-4113-93d7-a4bbeb7ec394	21	45833784	45833784	C	T	SNP	TRPM2	ENST00000300482	human	ensembl	69_37n	+1	known	silent	c.2973	p.F991	0.999	pfam_Ion_trans_dom	pfam_Ion_trans_dom,superfamily_NUDIX_hydrolase_dom-like	-	no_errors	TRPM2	HGNC	ENSG00000142185	118	0	0.00	61	12	16.00	-	-	-
TTLL1	0	genome.wustl.edu	37	22	43435850	43435850	+	Missense_Mutation	SNP	G	G	C			TCGA-A2-A0YL-01A-21D-A10G-09	TCGA-A2-A0YL-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3cc80b41-603d-4735-85c7-71f540dc6e5c	f570e581-5f15-4113-93d7-a4bbeb7ec394	22	43435850	43435850	G	C	SNP	TTLL1	ENST00000266254	human	ensembl	69_37n	-1	known	missense	c.1204	p.Q402E	0.847	NULL	pfam_Tub_tyr_ligase	-	no_errors	TTLL1	HGNC	ENSG00000100271	47	0	0.00	23	4	14.81	-	-	-
