Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
ANKRD30B	0	genome.wustl.edu	37	18	14852311	14852311	+	Silent	SNP	G	G	A			TCGA-A2-A3KD-01A-12D-A20S-09	TCGA-A2-A3KD-10A-01D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	37ddccc5-9ff1-4733-a5a9-595bba074e54	4d1c9503-ba24-449f-8f5c-8eb3a54067a1	18	14852311	14852311	G	A	SNP	ANKRD30B	ENST00000358984	human	ensembl	69_37n	+1	known	silent	c.4011	p.E1337	0.010	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD30B	HGNC	ENSG00000180777	50	0	0.00	31	5	13.89	-	-	-
ANKRD30BL	0	genome.wustl.edu	37	2	133015374	133015374	+	RNA	SNP	G	G	C			TCGA-A2-A3KD-01A-12D-A20S-09	TCGA-A2-A3KD-10A-01D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	37ddccc5-9ff1-4733-a5a9-595bba074e54	4d1c9503-ba24-449f-8f5c-8eb3a54067a1	2	133015374	133015374	G	C	SNP	ANKRD30BL	ENST00000470729	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	ANKRD30BL	HGNC	ENSG00000163046	41	0	0.00	66	11	14.29	-	-	-
CXCR3	0	genome.wustl.edu	37	X	70837002	70837002	+	Missense_Mutation	SNP	G	G	A			TCGA-A2-A3KD-01A-12D-A20S-09	TCGA-A2-A3KD-10A-01D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	37ddccc5-9ff1-4733-a5a9-595bba074e54	4d1c9503-ba24-449f-8f5c-8eb3a54067a1	X	70837002	70837002	G	A	SNP	CXCR3	ENST00000373691	human	ensembl	69_37n	-1	known	missense	c.461	p.P154L	0.999	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_Chemokine_rcpt,prints_ATII_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Chemokine_CXCR3,prints_7TM_GPCR_Rhodpsn,prints_Chemokine_CXCR4,prints_Chemokine_rcpt,prints_ATII_rcpt	-	no_errors	CXCR3	HGNC	ENSG00000186810	56	0	0.00	40	21	34.43	-	-	-
DGKG	0	genome.wustl.edu	37	3	185879390	185879390	+	Splice_Site	SNP	A	A	G			TCGA-A2-A3KD-01A-12D-A20S-09	TCGA-A2-A3KD-10A-01D-A20S-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	37ddccc5-9ff1-4733-a5a9-595bba074e54	4d1c9503-ba24-449f-8f5c-8eb3a54067a1	3	185879390	185879390	A	G	SNP	DGKG	ENST00000265022	human	ensembl	69_37n	-1	known	splice_site	c.2277+2	e23+2	1.000	-	-	-	no_errors	DGKG	HGNC	ENSG00000058866	50	0	0	34	12	25.53	-	-	-
FCRL3	0	genome.wustl.edu	37	1	157666256	157666256	+	RNA	SNP	T	T	C			TCGA-A2-A3KD-01A-12D-A20S-09	TCGA-A2-A3KD-10A-01D-A20S-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	37ddccc5-9ff1-4733-a5a9-595bba074e54	4d1c9503-ba24-449f-8f5c-8eb3a54067a1	1	157666256	157666256	T	C	SNP	FCRL3	ENST00000473231	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	FCRL3	HGNC	ENSG00000160856	8	0	0.00	3	10	76.92	-	-	-
FER1L4	0	genome.wustl.edu	37	20	34171140	34171140	+	RNA	SNP	T	T	C			TCGA-A2-A3KD-01A-12D-A20S-09	TCGA-A2-A3KD-10A-01D-A20S-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	37ddccc5-9ff1-4733-a5a9-595bba074e54	4d1c9503-ba24-449f-8f5c-8eb3a54067a1	20	34171140	34171140	T	C	SNP	FER1L4	ENST00000430275	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.969	-	-	-	no_errors	FER1L4	HGNC	ENSG00000088340	32	0	0.00	29	4	12.12	-	-	-
FLJ37453	0	genome.wustl.edu	37	1	16162471	16162471	+	RNA	SNP	C	C	A			TCGA-A2-A3KD-01A-12D-A20S-09	TCGA-A2-A3KD-10A-01D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	37ddccc5-9ff1-4733-a5a9-595bba074e54	4d1c9503-ba24-449f-8f5c-8eb3a54067a1	1	16162471	16162471	C	A	SNP	FLJ37453	ENST00000317122	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP11-169K16.9	Clone_based_vega_gene	ENSG00000179743	10	0	0.00	4	6	60.00	-	-	-
FOXI1	0	genome.wustl.edu	37	5	169535084	169535084	+	Silent	SNP	C	C	T			TCGA-A2-A3KD-01A-12D-A20S-09	TCGA-A2-A3KD-10A-01D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	37ddccc5-9ff1-4733-a5a9-595bba074e54	4d1c9503-ba24-449f-8f5c-8eb3a54067a1	5	169535084	169535084	C	T	SNP	FOXI1	ENST00000306268	human	ensembl	69_37n	+1	known	silent	c.606	p.N202	1.000	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXI1	HGNC	ENSG00000168269	17	0	0.00	6	4	40.00	-	-	-
HPS4	0	genome.wustl.edu	37	22	26868810	26868810	+	Silent	SNP	G	G	A			TCGA-A2-A3KD-01A-12D-A20S-09	TCGA-A2-A3KD-10A-01D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	37ddccc5-9ff1-4733-a5a9-595bba074e54	4d1c9503-ba24-449f-8f5c-8eb3a54067a1	22	26868810	26868810	G	A	SNP	HPS4	ENST00000398141	human	ensembl	69_37n	-1	known	silent	c.357	p.S119	0.088	NULL	NULL	-	no_errors	HPS4	HGNC	ENSG00000100099	39	0	0.00	26	7	21.21	-	-	-
IGHA2	0	genome.wustl.edu	37	14	106053932	106053932	+	Missense_Mutation	SNP	G	G	A			TCGA-A2-A3KD-01A-12D-A20S-09	TCGA-A2-A3KD-10A-01D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	37ddccc5-9ff1-4733-a5a9-595bba074e54	4d1c9503-ba24-449f-8f5c-8eb3a54067a1	14	106053932	106053932	G	A	SNP	IGHA2	ENST00000390539	human	ensembl	69_37n	-1	known	missense	c.587	p.P196L	0.543	smart_Ig_C1-set,pfscan_Ig-like	pfam_Ig_C1-set,pfam_CD80_C2-set,smart_Ig_C1-set,pfscan_Ig-like	-	no_start_codon	IGHA2	HGNC	ENSG00000211890	57	0	0.00	109	19	14.84	-	-	-
KRT16P1	0	genome.wustl.edu	37	17	18343286	18343286	+	RNA	SNP	C	C	T			TCGA-A2-A3KD-01A-12D-A20S-09	TCGA-A2-A3KD-10A-01D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	37ddccc5-9ff1-4733-a5a9-595bba074e54	4d1c9503-ba24-449f-8f5c-8eb3a54067a1	17	18343286	18343286	C	T	SNP	KRT16P1	ENST00000584135	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	KRT16P1	HGNC	ENSG00000214856	15	0	0.00	16	5	23.81	-	-	-
KRT4	0	genome.wustl.edu	37	12	53207582	53207582	+	Silent	SNP	A	A	G			TCGA-A2-A3KD-01A-12D-A20S-09	TCGA-A2-A3KD-10A-01D-A20S-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	37ddccc5-9ff1-4733-a5a9-595bba074e54	4d1c9503-ba24-449f-8f5c-8eb3a54067a1	12	53207582	53207582	A	G	SNP	KRT4	ENST00000293774	human	ensembl	69_37n	-1	known	silent	c.483	p.G161	0.946	NULL	pfam_F,superfamily_Prefoldin,prints_Keratin_II,prints_Keratin_I	-	no_errors	KRT4	HGNC	ENSG00000170477	33	0	0.00	32	9	21.95	-	-	-
LMCD1	0	genome.wustl.edu	37	3	8609232	8609232	+	Missense_Mutation	SNP	T	T	C			TCGA-A2-A3KD-01A-12D-A20S-09	TCGA-A2-A3KD-10A-01D-A20S-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	37ddccc5-9ff1-4733-a5a9-595bba074e54	4d1c9503-ba24-449f-8f5c-8eb3a54067a1	3	8609232	8609232	T	C	SNP	LMCD1	ENST00000157600	human	ensembl	69_37n	+1	known	missense	c.1046	p.V349A	0.998	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	pfam_PET_domain,pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	LMCD1	HGNC	ENSG00000071282	47	0	0.00	25	8	23.53	-	-	-
MED1	0	genome.wustl.edu	37	17	37584005	37584005	+	Missense_Mutation	SNP	C	C	T			TCGA-A2-A3KD-01A-12D-A20S-09	TCGA-A2-A3KD-10A-01D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	37ddccc5-9ff1-4733-a5a9-595bba074e54	4d1c9503-ba24-449f-8f5c-8eb3a54067a1	17	37584005	37584005	C	T	SNP	MED1	ENST00000300651	human	ensembl	69_37n	-1	known	missense	c.688	p.D230N	1.000	pfam_Mediator_Med1_met/fun	pfam_Mediator_Med1_met/fun	-	no_errors	MED1	HGNC	ENSG00000125686	38	0	0.00	25	4	13.79	-	-	-
OR6K6	0	genome.wustl.edu	37	1	158724608	158724608	+	Missense_Mutation	SNP	G	G	A			TCGA-A2-A3KD-01A-12D-A20S-09	TCGA-A2-A3KD-10A-01D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	37ddccc5-9ff1-4733-a5a9-595bba074e54	4d1c9503-ba24-449f-8f5c-8eb3a54067a1	1	158724608	158724608	G	A	SNP	OR6K6	ENST00000368144	human	ensembl	69_37n	+1	known	missense	c.3	p.M1I	0.000	NULL	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR6K6	HGNC	ENSG00000180433	32	0	0.00	67	8	10.67	-	-	-
PBX2P1	0	genome.wustl.edu	37	3	142897015	142897015	+	RNA	SNP	C	C	T			TCGA-A2-A3KD-01A-12D-A20S-09	TCGA-A2-A3KD-10A-01D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	37ddccc5-9ff1-4733-a5a9-595bba074e54	4d1c9503-ba24-449f-8f5c-8eb3a54067a1	3	142897015	142897015	C	T	SNP	PBX2P1	ENST00000560287	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.987	-	-	-	no_errors	PBX2P1	HGNC	ENSG00000244171	50	0	0.00	41	14	25.00	-	-	-
SLC39A9	0	genome.wustl.edu	37	14	69920016	69920016	+	Silent	SNP	C	C	T			TCGA-A2-A3KD-01A-12D-A20S-09	TCGA-A2-A3KD-10A-01D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	37ddccc5-9ff1-4733-a5a9-595bba074e54	4d1c9503-ba24-449f-8f5c-8eb3a54067a1	14	69920016	69920016	C	T	SNP	SLC39A9	ENST00000555840	human	ensembl	69_37n	+1	known	silent	c.462	p.V154	1.000	pfam_ZIP	pfam_ZIP	-	no_errors	SLC39A9	HGNC	ENSG00000029364	66	0	0.00	47	35	42.17	-	-	-
TBC1D3P1-DHX40P1	0	genome.wustl.edu	37	17	58085530	58085530	+	RNA	SNP	T	T	C			TCGA-A2-A3KD-01A-12D-A20S-09	TCGA-A2-A3KD-10A-01D-A20S-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	37ddccc5-9ff1-4733-a5a9-595bba074e54	4d1c9503-ba24-449f-8f5c-8eb3a54067a1	17	58085530	58085530	T	C	SNP	TBC1D3P1-DHX40P1	ENST00000407042	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.068	-	-	-	no_errors	TBC1D3P1-DHX40P1	HGNC	ENSG00000267104	20	0	0.00	26	5	16.13	-	-	-
ZNF275	0	genome.wustl.edu	37	X	152613219	152613219	+	Missense_Mutation	SNP	G	G	A			TCGA-A2-A3KD-01A-12D-A20S-09	TCGA-A2-A3KD-10A-01D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	37ddccc5-9ff1-4733-a5a9-595bba074e54	4d1c9503-ba24-449f-8f5c-8eb3a54067a1	X	152613219	152613219	G	A	SNP	ZNF275	ENST00000440091	human	ensembl	69_37n	+1	known	missense	c.1166	p.R389H	0.797	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF275	HGNC	ENSG00000063587	67	0	0.00	59	18	23.38	-	-	-
