Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
ABCA8	0	genome.wustl.edu	37	17	66925817	66925817	+	Missense_Mutation	SNP	C	C	A			TCGA-A8-A08A-01A-11W-A019-09	TCGA-A8-A08A-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0257d030-6d78-452c-9dcc-79fe50533543	47f8d355-c16e-49ea-919c-9924b1a9c375	17	66925817	66925817	C	A	SNP	ABCA8	ENST00000430352	human	ensembl	69_37n	-1	known	missense	c.824	p.G275V	0.025	NULL	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA8	HGNC	ENSG00000141338	336	0	0.00	217	88	28.85	-	-	-
ANKRD20A4	0	genome.wustl.edu	37	9	69421983	69421983	+	Missense_Mutation	SNP	G	G	C			TCGA-A8-A08A-01A-11W-A019-09	TCGA-A8-A08A-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0257d030-6d78-452c-9dcc-79fe50533543	47f8d355-c16e-49ea-919c-9924b1a9c375	9	69421983	69421983	G	C	SNP	ANKRD20A4	ENST00000357336	human	ensembl	69_37n	+1	known	missense	c.1447	p.V483L	0.004	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD20A4	HGNC	ENSG00000172014	32	0	0.00	29	7	19.44	-	-	-
ARMCX1	0	genome.wustl.edu	37	X	100808906	100808907	+	Frame_Shift_Ins	INS	-	-	T			TCGA-A8-A08A-01A-11W-A019-09	TCGA-A8-A08A-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0257d030-6d78-452c-9dcc-79fe50533543	47f8d355-c16e-49ea-919c-9924b1a9c375	X	100808906	100808907	-	T	INS	ARMCX1	ENST00000372829	human	ensembl	69_37n	+1	known	frame_shift_ins	c.993_994	p.A333fs	0.997:0.998	pfam_ARM-rpt_dom,superfamily_ARM-type_fold	pfam_ARM-rpt_dom,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	ARMCX1	HGNC	ENSG00000126947	417	0	0.00	408	90	18.07	-	-	-
BMX	0	genome.wustl.edu	37	X	15540601	15540601	+	Nonsense_Mutation	SNP	C	C	T			TCGA-A8-A08A-01A-11W-A019-09	TCGA-A8-A08A-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0257d030-6d78-452c-9dcc-79fe50533543	47f8d355-c16e-49ea-919c-9924b1a9c375	X	15540601	15540601	C	T	SNP	BMX	ENST00000342014	human	ensembl	69_37n	+1	known	nonsense	c.643	p.Q215*	0.005	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_SH2,pfam_Pleckstrin_homology,pfam_Znf_Btk_motif,superfamily_Kinase-like_dom,smart_Pleckstrin_homology,smart_Znf_Btk_motif,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2,prints_Znf_Btk_motif,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_Znf_Btk_motif,pfscan_Prot_kinase_cat_dom	-	no_errors	BMX	HGNC	ENSG00000102010	631	2	0.31	432	219	33.64	-	-	-
C4orf6	0	genome.wustl.edu	37	4	5528055	5528055	+	Missense_Mutation	SNP	A	A	G			TCGA-A8-A08A-01A-11W-A019-09	TCGA-A8-A08A-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0257d030-6d78-452c-9dcc-79fe50533543	47f8d355-c16e-49ea-919c-9924b1a9c375	4	5528055	5528055	A	G	SNP	C4orf6	ENST00000505296	human	ensembl	69_37n	+1	novel	missense	c.241	p.M81V	0.024	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	C4orf6	HGNC	ENSG00000082929	126	0	0.00	93	48	34.04	-	-	-
CCDC88A	0	genome.wustl.edu	37	2	55549817	55549818	+	Frame_Shift_Ins	INS	-	-	T			TCGA-A8-A08A-01A-11W-A019-09	TCGA-A8-A08A-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0257d030-6d78-452c-9dcc-79fe50533543	47f8d355-c16e-49ea-919c-9924b1a9c375	2	55549817	55549818	-	T	INS	CCDC88A	ENST00000436346	human	ensembl	69_37n	-1	known	frame_shift_ins	c.3009_3008	p.N1003fs	1.000:1.000	NULL	pfam_HOOK,superfamily_Prefoldin,superfamily_t-SNARE	-	no_errors	CCDC88A	HGNC	ENSG00000115355	107	0	0.00	93	24	20.51	-	-	-
CTC1	0	genome.wustl.edu	37	17	8141861	8141861	+	Missense_Mutation	SNP	C	C	G			TCGA-A8-A08A-01A-11W-A019-09	TCGA-A8-A08A-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0257d030-6d78-452c-9dcc-79fe50533543	47f8d355-c16e-49ea-919c-9924b1a9c375	17	8141861	8141861	C	G	SNP	CTC1	ENST00000315684	human	ensembl	69_37n	-1	known	missense	c.284	p.W95S	0.987	NULL	NULL	-	no_errors	CTC1	HGNC	ENSG00000178971	95	0	0.00	94	16	14.55	-	-	-
CYP11B1	0	genome.wustl.edu	37	8	143959174	143959174	+	Missense_Mutation	SNP	T	T	C			TCGA-A8-A08A-01A-11W-A019-09	TCGA-A8-A08A-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0257d030-6d78-452c-9dcc-79fe50533543	47f8d355-c16e-49ea-919c-9924b1a9c375	8	143959174	143959174	T	C	SNP	CYP11B1	ENST00000377675	human	ensembl	69_37n	-1	novel	missense	c.607	p.R203G	0.000	superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_B,prints_Cyt_P450	-	no_errors	CYP11B1	HGNC	ENSG00000160882	40	0	0.00	31	9	22.50	-	-	-
ERBB4	0	genome.wustl.edu	37	2	212248393	212248393	+	Missense_Mutation	SNP	G	G	A			TCGA-A8-A08A-01A-11W-A019-09	TCGA-A8-A08A-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0257d030-6d78-452c-9dcc-79fe50533543	47f8d355-c16e-49ea-919c-9924b1a9c375	2	212248393	212248393	G	A	SNP	ERBB4	ENST00000342788	human	ensembl	69_37n	-1	known	missense	c.3874	p.P1292S	1.000	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_cat_dom,pfam_Furin-like_Cys-rich_dom,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt,smart_Furin_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	ERBB4	HGNC	ENSG00000178568	129	0	0.00	75	30	28.57	-	-	-
FAM123B	0	genome.wustl.edu	37	X	63411447	63411447	+	Missense_Mutation	SNP	G	G	A			TCGA-A8-A08A-01A-11W-A019-09	TCGA-A8-A08A-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0257d030-6d78-452c-9dcc-79fe50533543	47f8d355-c16e-49ea-919c-9924b1a9c375	X	63411447	63411447	G	A	SNP	FAM123B	ENST00000330258	human	ensembl	69_37n	-1	known	missense	c.1720	p.R574W	0.035	NULL	pfam_Uncharacterised_FAM123	-	no_errors	FAM123B	HGNC	ENSG00000184675	142	0	0.00	121	41	25.31	-	-	-
FAT2	0	genome.wustl.edu	37	5	150948304	150948304	+	Silent	SNP	C	C	T			TCGA-A8-A08A-01A-11W-A019-09	TCGA-A8-A08A-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0257d030-6d78-452c-9dcc-79fe50533543	47f8d355-c16e-49ea-919c-9924b1a9c375	5	150948304	150948304	C	T	SNP	FAT2	ENST00000261800	human	ensembl	69_37n	-1	known	silent	c.189	p.A63	0.000	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl,smart_Cadherin,smart_Laminin_G,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT2	HGNC	ENSG00000086570	237	0	0.00	117	66	36.07	-	-	-
FCHO1	0	genome.wustl.edu	37	19	17881246	17881248	+	In_Frame_Del	DEL	GTG	GTG	-			TCGA-A8-A08A-01A-11W-A019-09	TCGA-A8-A08A-10A-01W-A021-09	GTG	GTG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0257d030-6d78-452c-9dcc-79fe50533543	47f8d355-c16e-49ea-919c-9924b1a9c375	19	17881246	17881248	GTG	-	DEL	FCHO1	ENST00000252771	human	ensembl	69_37n	+1	known	in_frame_del	c.349_351	p.V118in_frame_del	0.843:0.631:0.438	NULL	pfam_Muniscin_C-term_mu_dom,pfam_FCH,superfamily_Clathrin_mu_C,smart_FCH,pfscan_FCH	-	no_errors	FCHO1	HGNC	ENSG00000130475	21	0	0.00	30	7	18.92	-	-	-
FMNL3	0	genome.wustl.edu	37	12	50052270	50052270	+	Missense_Mutation	SNP	G	G	A			TCGA-A8-A08A-01A-11W-A019-09	TCGA-A8-A08A-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0257d030-6d78-452c-9dcc-79fe50533543	47f8d355-c16e-49ea-919c-9924b1a9c375	12	50052270	50052270	G	A	SNP	FMNL3	ENST00000293590	human	ensembl	69_37n	-1	known	missense	c.560	p.P187L	1.000	superfamily_ARM-type_fold	pfam_FH2_actin-bd,pfam_Drf_FH3,pfam_Drf_GTPase-bd,superfamily_FH2_actin-bd,superfamily_ARM-type_fold,smart_Actin-bd_FH2/DRF_autoreg	-	no_errors	FMNL3	HGNC	ENSG00000161791	48	0	0.00	34	22	39.29	-	-	-
FOXA1	0	genome.wustl.edu	37	14	38061222	38061222	+	Missense_Mutation	SNP	T	T	A			TCGA-A8-A08A-01A-11W-A019-09	TCGA-A8-A08A-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0257d030-6d78-452c-9dcc-79fe50533543	47f8d355-c16e-49ea-919c-9924b1a9c375	14	38061222	38061222	T	A	SNP	FOXA1	ENST00000250448	human	ensembl	69_37n	-1	known	missense	c.767	p.N256I	1.000	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head	pfam_TF_fork_head,pfam_Fork-head_N,pfam_Forkhead_box_C,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXA1	HGNC	ENSG00000129514	21	0	0.00	18	4	18.18	-	-	-
GPR133	0	genome.wustl.edu	37	12	131622702	131622703	+	Frame_Shift_Ins	INS	-	-	A			TCGA-A8-A08A-01A-11W-A019-09	TCGA-A8-A08A-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0257d030-6d78-452c-9dcc-79fe50533543	47f8d355-c16e-49ea-919c-9924b1a9c375	12	131622702	131622703	-	A	INS	GPR133	ENST00000261654	human	ensembl	69_37n	+1	known	frame_shift_ins	c.2457_2458	p.T820fs	1.000:1.000	NULL	pfam_GPCR_2_secretin-like,pfam_GPS_dom,superfamily_ConA-like_lec_gl,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	GPR133	HGNC	ENSG00000111452	44	0	0.00	16	2	11.11	-	-	-
GTF2IRD1	0	genome.wustl.edu	37	7	73961494	73961494	+	Silent	SNP	G	G	A			TCGA-A8-A08A-01A-11W-A019-09	TCGA-A8-A08A-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0257d030-6d78-452c-9dcc-79fe50533543	47f8d355-c16e-49ea-919c-9924b1a9c375	7	73961494	73961494	G	A	SNP	GTF2IRD1	ENST00000265755	human	ensembl	69_37n	+1	known	silent	c.1794	p.P598	0.291	pfam_GTF2I,superfamily_GTF2I,pirsf_TF_II-I,pfscan_GTF2I	pfam_GTF2I,superfamily_GTF2I,pirsf_TF_II-I,pfscan_GTF2I	-	no_errors	GTF2IRD1	HGNC	ENSG00000006704	28	0	0.00	30	6	16.22	-	-	-
GTF3C1	0	genome.wustl.edu	37	16	27506805	27506805	+	Silent	SNP	G	G	A			TCGA-A8-A08A-01A-11W-A019-09	TCGA-A8-A08A-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0257d030-6d78-452c-9dcc-79fe50533543	47f8d355-c16e-49ea-919c-9924b1a9c375	16	27506805	27506805	G	A	SNP	GTF3C1	ENST00000356183	human	ensembl	69_37n	-1	known	silent	c.2359	p.L787	1.000	NULL	pfam_TFIIIC_Bblock-bd	-	no_errors	GTF3C1	HGNC	ENSG00000077235	22	0	0.00	20	4	16.67	-	-	-
HERC1	0	genome.wustl.edu	37	15	63944671	63944671	+	Missense_Mutation	SNP	C	C	T			TCGA-A8-A08A-01A-11W-A019-09	TCGA-A8-A08A-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0257d030-6d78-452c-9dcc-79fe50533543	47f8d355-c16e-49ea-919c-9924b1a9c375	15	63944671	63944671	C	T	SNP	HERC1	ENST00000443617	human	ensembl	69_37n	-1	known	missense	c.10360	p.V3454I	0.997	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_Reg_chr_condens,pfam_HECT,pfam_WD40_repeat,pfam_SPRY_rcpt,superfamily_Reg_csome_cond/b-lactamase_inh,superfamily_HECT,superfamily_WD40_repeat_dom,superfamily_ConA-like_lec_gl,superfamily_UBA-like,superfamily_ARM-type_fold,smart_SPla/RYanodine_receptor_subgr,smart_WD40_repeat,smart_HECT,pfscan_B30.2/SPRY,pfscan_HECT,pfscan_Reg_chr_condens,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Reg_chr_condens	-	no_errors	HERC1	HGNC	ENSG00000103657	53	0	0.00	33	22	40.00	-	-	-
IGFBP7	0	genome.wustl.edu	37	4	57907076	57907077	+	Frame_Shift_Ins	INS	-	-	G			TCGA-A8-A08A-01A-11W-A019-09	TCGA-A8-A08A-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0257d030-6d78-452c-9dcc-79fe50533543	47f8d355-c16e-49ea-919c-9924b1a9c375	4	57907076	57907077	-	G	INS	IGFBP7	ENST00000295666	human	ensembl	69_37n	-1	known	frame_shift_ins	c.499_498	p.K166fs	1.000:1.000	pfam_Ig_I-set,smart_Ig_sub,pirsf_IGFBP_rP_mac25,pfscan_Ig-like	pfam_Ig_I-set,pfam_Kazal-type_dom,pfam_Prot_inh_Kazal,pfam_IGFBP-like,smart_IGFBP-like,smart_Prot_inh_Kazal,smart_Ig_sub,pirsf_IGFBP_rP_mac25,pfscan_Ig-like	-	no_errors	IGFBP7	HGNC	ENSG00000163453	78	0	0.00	62	7	10.14	-	-	-
LPA	0	genome.wustl.edu	37	6	161007564	161007564	+	Missense_Mutation	SNP	G	G	A			TCGA-A8-A08A-01A-11W-A019-09	TCGA-A8-A08A-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0257d030-6d78-452c-9dcc-79fe50533543	47f8d355-c16e-49ea-919c-9924b1a9c375	6	161007564	161007564	G	A	SNP	LPA	ENST00000316300	human	ensembl	69_37n	-1	known	missense	c.4046	p.T1349M	0.337	pfam_Kringle,superfamily_Kringle-like,smart_Kringle,pfscan_Kringle	pfam_Kringle,pfam_Peptidase_S1_S6,pfam_Peptidase_S1A_nudel,superfamily_Pept_cys/ser_Trypsin-like,superfamily_Kringle-like,smart_Kringle,smart_Peptidase_S1_S6,prints_Peptidase_S1A,pfscan_Kringle,pfscan_Peptidase_S1_S6	-	no_errors	LPA	HGNC	ENSG00000198670	341	0	0.00	210	112	34.78	-	-	-
MED12	0	genome.wustl.edu	37	X	70340011	70340011	+	Missense_Mutation	SNP	C	C	T			TCGA-A8-A08A-01A-11W-A019-09	TCGA-A8-A08A-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0257d030-6d78-452c-9dcc-79fe50533543	47f8d355-c16e-49ea-919c-9924b1a9c375	X	70340011	70340011	C	T	SNP	MED12	ENST00000333646	human	ensembl	69_37n	+1	known	missense	c.544	p.P182S	1.000	NULL	pfam_Mediator_Med12_LCEWAV,pfam_Mediator_Med12_catenin-bd,pfam_Mediator_Med12	-	no_errors	MED12	HGNC	ENSG00000184634	276	0	0.00	128	60	31.91	-	-	-
MTUS2	0	genome.wustl.edu	37	13	29600217	29600217	+	Missense_Mutation	SNP	G	G	T			TCGA-A8-A08A-01A-11W-A019-09	TCGA-A8-A08A-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0257d030-6d78-452c-9dcc-79fe50533543	47f8d355-c16e-49ea-919c-9924b1a9c375	13	29600217	29600217	G	T	SNP	MTUS2	ENST00000431530	human	ensembl	69_37n	+1	known	missense	c.1412	p.S471I	0.000	NULL	NULL	-	no_errors	MTUS2	HGNC	ENSG00000132938	197	0	0.00	101	48	32.21	-	-	-
PIP5K1A	0	genome.wustl.edu	37	1	151204807	151204807	+	Frame_Shift_Del	DEL	G	G	-			TCGA-A8-A08A-01A-11W-A019-09	TCGA-A8-A08A-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0257d030-6d78-452c-9dcc-79fe50533543	47f8d355-c16e-49ea-919c-9924b1a9c375	1	151204807	151204807	G	-	DEL	PIP5K1A	ENST00000368888	human	ensembl	69_37n	+1	known	frame_shift_del	c.452	p.E152fs	1.000	smart_PInositol-4P-5-kinase_core_sub	pfam_PInositol-4-P-5-kinase_core,smart_PInositol-4P-5-kinase_core_sub	-	no_errors	PIP5K1A	HGNC	ENSG00000143398	220	0	0.00	392	54	11.89	-	-	-
PLA2G4E	0	genome.wustl.edu	37	15	42284983	42284983	+	Silent	SNP	G	G	A			TCGA-A8-A08A-01A-11W-A019-09	TCGA-A8-A08A-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0257d030-6d78-452c-9dcc-79fe50533543	47f8d355-c16e-49ea-919c-9924b1a9c375	15	42284983	42284983	G	A	SNP	PLA2G4E	ENST00000413860	human	ensembl	69_37n	-1	known	silent	c.1335	p.T445	0.992	pfam_LysoPLipase_cat_dom,superfamily_Acyl_Trfase/lysoPLipase,smart_LysoPLipase_cat_dom,pfscan_LysoPLipase_cat_dom	pfam_LysoPLipase_cat_dom,pfam_C2_Ca-dep,superfamily_Acyl_Trfase/lysoPLipase,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_LysoPLipase_cat_dom,pfscan_C2_membr_targeting,pfscan_LysoPLipase_cat_dom	-	no_errors	PLA2G4E	HGNC	ENSG00000188089	51	0	0.00	24	8	25.00	-	-	-
PSIP1	0	genome.wustl.edu	37	9	15474030	15474032	+	In_Frame_Del	DEL	CTT	CTT	-			TCGA-A8-A08A-01A-11W-A019-09	TCGA-A8-A08A-10A-01W-A021-09	CTT	CTT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0257d030-6d78-452c-9dcc-79fe50533543	47f8d355-c16e-49ea-919c-9924b1a9c375	9	15474030	15474032	CTT	-	DEL	PSIP1	ENST00000380733	human	ensembl	69_37n	-1	known	in_frame_del	c.835_833	p.E278in_frame_del	1.000:0.993:1.000	prints_Treacle-like_TCS	pfam_LEDGF,pfam_PWWP,smart_PWWP,prints_Treacle-like_TCS,pfscan_PWWP	-	no_errors	PSIP1	HGNC	ENSG00000164985	447	0	0.00	358	115	24.31	-	-	-
RTKN2	0	genome.wustl.edu	37	10	63964752	63964752	+	Missense_Mutation	SNP	A	A	T			TCGA-A8-A08A-01A-11W-A019-09	TCGA-A8-A08A-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0257d030-6d78-452c-9dcc-79fe50533543	47f8d355-c16e-49ea-919c-9924b1a9c375	10	63964752	63964752	A	T	SNP	RTKN2	ENST00000373789	human	ensembl	69_37n	-1	known	missense	c.1050	p.D350E	0.358	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Pleckstrin_homology,superfamily_HR1_rho-bd,smart_HR1_rho-bd,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	RTKN2	HGNC	ENSG00000182010	123	0	0.00	101	50	33.11	-	-	-
TBC1D2	0	genome.wustl.edu	37	9	100983164	100983164	+	Frame_Shift_Del	DEL	G	G	-			TCGA-A8-A08A-01A-11W-A019-09	TCGA-A8-A08A-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0257d030-6d78-452c-9dcc-79fe50533543	47f8d355-c16e-49ea-919c-9924b1a9c375	9	100983164	100983164	G	-	DEL	TBC1D2	ENST00000375066	human	ensembl	69_37n	-1	known	frame_shift_del	c.1325	p.A442fs	0.000	NULL	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Pleckstrin_homology,smart_Rab-GTPase-TBC_dom,pfscan_Pleckstrin_homology,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D2	HGNC	ENSG00000095383	25	0	0.00	16	7	30.43	-	-	-
THBS1	0	genome.wustl.edu	37	15	39883401	39883402	+	Frame_Shift_Ins	INS	-	-	CA			TCGA-A8-A08A-01A-11W-A019-09	TCGA-A8-A08A-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0257d030-6d78-452c-9dcc-79fe50533543	47f8d355-c16e-49ea-919c-9924b1a9c375	15	39883401	39883402	-	CA	INS	THBS1	ENST00000260356	human	ensembl	69_37n	+1	known	frame_shift_ins	c.2263_2264	p.F756fs	1.000:0.999	NULL	pfam_Thrombospondin_C,pfam_Thrombospondin_1_rpt,pfam_VWF_C,pfam_Thrombospondin_3-like_rpt,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl,superfamily_Thrombospondin_1_rpt,smart_Laminin_G,smart_VWF_C,smart_Thrombospondin_1_rpt,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom,pfscan_Thrombospondin_1_rpt,pfscan_VWF_C	-	no_errors	THBS1	HGNC	ENSG00000137801	146	0	0.00	82	21	20.39	-	-	-
TMEM161B	0	genome.wustl.edu	37	5	87494931	87494931	+	Missense_Mutation	SNP	C	C	A			TCGA-A8-A08A-01A-11W-A019-09	TCGA-A8-A08A-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0257d030-6d78-452c-9dcc-79fe50533543	47f8d355-c16e-49ea-919c-9924b1a9c375	5	87494931	87494931	C	A	SNP	TMEM161B	ENST00000296595	human	ensembl	69_37n	-1	known	missense	c.951	p.W317C	1.000	pfam_Transmembrane_161A/B	pfam_Transmembrane_161A/B	-	no_errors	TMEM161B	HGNC	ENSG00000164180	38	0	0.00	48	24	33.33	-	-	-
UPF3B	0	genome.wustl.edu	37	X	118986832	118986832	+	Silent	SNP	G	G	A			TCGA-A8-A08A-01A-11W-A019-09	TCGA-A8-A08A-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0257d030-6d78-452c-9dcc-79fe50533543	47f8d355-c16e-49ea-919c-9924b1a9c375	X	118986832	118986832	G	A	SNP	UPF3B	ENST00000276201	human	ensembl	69_37n	-1	known	silent	c.60	p.A20	0.000	NULL	pfam_Nonsense_mediated_decay_UPF3	-	no_errors	UPF3B	HGNC	ENSG00000125351	125	0	0.00	114	60	33.71	-	-	-
VSIG1	0	genome.wustl.edu	37	X	107320387	107320387	+	Missense_Mutation	SNP	A	A	G			TCGA-A8-A08A-01A-11W-A019-09	TCGA-A8-A08A-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0257d030-6d78-452c-9dcc-79fe50533543	47f8d355-c16e-49ea-919c-9924b1a9c375	X	107320387	107320387	A	G	SNP	VSIG1	ENST00000415430	human	ensembl	69_37n	+1	known	missense	c.1048	p.T350A	0.000	NULL	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like	-	no_errors	VSIG1	HGNC	ENSG00000101842	421	1	0.24	281	129	31.31	-	-	-
ZNF142	0	genome.wustl.edu	37	2	219514141	219514141	+	Missense_Mutation	SNP	T	T	C			TCGA-A8-A08A-01A-11W-A019-09	TCGA-A8-A08A-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0257d030-6d78-452c-9dcc-79fe50533543	47f8d355-c16e-49ea-919c-9924b1a9c375	2	219514141	219514141	T	C	SNP	ZNF142	ENST00000411696	human	ensembl	69_37n	-1	known	missense	c.490	p.M164V	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF142	HGNC	ENSG00000115568	26	0	0.00	16	10	38.46	-	-	-
