Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
AP1G2	0	genome.wustl.edu	37	14	24032653	24032654	+	Frame_Shift_Ins	INS	-	-	C			TCGA-A8-A08X-01A-21W-A019-09	TCGA-A8-A08X-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	67c7d350-5c82-49b0-a7eb-6ca829ffcbc9	263fb74b-c2f8-4ad7-8b3e-0e02749d167e	14	24032653	24032654	-	C	INS	AP1G2	ENST00000308724	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1346_1345	p.A449fs	1.000:0.996	pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_AP1_complex_gsu	pfam_Clathrin/coatomer_adapt-like_N,pfam_Clathrin_a/b/g-adaptin_app_Ig,superfamily_ARM-type_fold,superfamily_Coatomer/clathrin_app_Ig-like,smart_Clathrin_a/b/g-adaptin_app_Ig,pirsf_AP1_complex_gsu,pfscan_Clathrin_g-adaptin_app	-	no_errors	AP1G2	HGNC	ENSG00000213983	44	0	0.00	53	6	10.17	-	-	-
COX6C	0	genome.wustl.edu	37	8	100899792	100899792	+	Missense_Mutation	SNP	C	C	A			TCGA-A8-A08X-01A-21W-A019-09	TCGA-A8-A08X-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	67c7d350-5c82-49b0-a7eb-6ca829ffcbc9	263fb74b-c2f8-4ad7-8b3e-0e02749d167e	8	100899792	100899792	C	A	SNP	COX6C	ENST00000297564	human	ensembl	69_37n	-1	known	missense	c.169	p.D57Y	1.000	pfam_Cyt_c_oxidase_su6c,superfamily_Cyt_c_oxidase_su6c	pfam_Cyt_c_oxidase_su6c,superfamily_Cyt_c_oxidase_su6c	-	no_errors	COX6C	HGNC	ENSG00000164919	95	0	0.00	168	19	10.16	-	-	-
DLC1	0	genome.wustl.edu	37	8	12957977	12957977	+	Silent	SNP	G	G	A			TCGA-A8-A08X-01A-21W-A019-09	TCGA-A8-A08X-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	67c7d350-5c82-49b0-a7eb-6ca829ffcbc9	263fb74b-c2f8-4ad7-8b3e-0e02749d167e	8	12957977	12957977	G	A	SNP	DLC1	ENST00000276297	human	ensembl	69_37n	-1	known	silent	c.1869	p.S623	0.998	NULL	pfam_START_lipid-bd,pfam_RhoGAP_dom,pfam_SAM_2,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,smart_START_lipid-bd,pfscan_START_lipid-bd,pfscan_RhoGAP_dom	-	no_errors	DLC1	HGNC	ENSG00000164741	69	0	0.00	47	11	18.97	-	-	-
FCRL1	0	genome.wustl.edu	37	1	157773658	157773658	+	Missense_Mutation	SNP	C	C	T			TCGA-A8-A08X-01A-21W-A019-09	TCGA-A8-A08X-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	67c7d350-5c82-49b0-a7eb-6ca829ffcbc9	263fb74b-c2f8-4ad7-8b3e-0e02749d167e	1	157773658	157773658	C	T	SNP	FCRL1	ENST00000368176	human	ensembl	69_37n	-1	known	missense	c.296	p.R99K	0.000	smart_Ig_sub,pfscan_Ig-like	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	FCRL1	HGNC	ENSG00000163534	168	0	0.00	166	63	27.51	-	-	-
FNDC3A	0	genome.wustl.edu	37	13	49712942	49712945	+	Splice_Site	DEL	GTAA	GTAA	-			TCGA-A8-A08X-01A-21W-A019-09	TCGA-A8-A08X-10A-01W-A021-09	GTAA	GTAA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	67c7d350-5c82-49b0-a7eb-6ca829ffcbc9	263fb74b-c2f8-4ad7-8b3e-0e02749d167e	13	49712942	49712945	GTAA	-	DEL	FNDC3A	ENST00000492622	human	ensembl	69_37n	+1	known	splice_site_del	c.819+1_819+1	e6+1	1.000:1.000:1.000:1.000	-	-	-	no_errors	FNDC3A	HGNC	ENSG00000102531	97	0	0.00	48	9	15.79	-	-	-
IL12RB1	0	genome.wustl.edu	37	19	18186597	18186597	+	Missense_Mutation	SNP	G	G	A			TCGA-A8-A08X-01A-21W-A019-09	TCGA-A8-A08X-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	67c7d350-5c82-49b0-a7eb-6ca829ffcbc9	263fb74b-c2f8-4ad7-8b3e-0e02749d167e	19	18186597	18186597	G	A	SNP	IL12RB1	ENST00000430026	human	ensembl	69_37n	-1	known	missense	c.662	p.S221F	0.627	superfamily_Fibronectin_type3	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	IL12RB1	HGNC	ENSG00000096996	33	0	0.00	28	11	28.21	-	-	-
MAN2A1	0	genome.wustl.edu	37	5	109091135	109091135	+	Silent	SNP	T	T	C			TCGA-A8-A08X-01A-21W-A019-09	TCGA-A8-A08X-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	67c7d350-5c82-49b0-a7eb-6ca829ffcbc9	263fb74b-c2f8-4ad7-8b3e-0e02749d167e	5	109091135	109091135	T	C	SNP	MAN2A1	ENST00000261483	human	ensembl	69_37n	+1	known	silent	c.813	p.H271	1.000	pfam_Glyco_hydro_38_core,superfamily_Glyco_hydro/deAcase_b/a-brl	pfam_Glyco_hydro_38_core,pfam_Glyco_hydro_38_C,pfam_Glyco_hydro_38_cen_dom,superfamily_Glyco_hydro-type_carb-bd,superfamily_Glyco_hydro/deAcase_b/a-brl,smart_Glyco_hydro_38_cen_dom	-	no_errors	MAN2A1	HGNC	ENSG00000112893	275	0	0.00	125	35	21.88	-	-	-
PDS5B	0	genome.wustl.edu	37	13	33233398	33233398	+	Missense_Mutation	SNP	A	A	T			TCGA-A8-A08X-01A-21W-A019-09	TCGA-A8-A08X-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	67c7d350-5c82-49b0-a7eb-6ca829ffcbc9	263fb74b-c2f8-4ad7-8b3e-0e02749d167e	13	33233398	33233398	A	T	SNP	PDS5B	ENST00000315596	human	ensembl	69_37n	+1	known	missense	c.605	p.N202I	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	PDS5B	HGNC	ENSG00000083642	222	0	0.00	164	53	24.42	-	-	-
PLEKHS1	0	genome.wustl.edu	37	10	115540376	115540376	+	Missense_Mutation	SNP	A	A	G			TCGA-A8-A08X-01A-21W-A019-09	TCGA-A8-A08X-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	67c7d350-5c82-49b0-a7eb-6ca829ffcbc9	263fb74b-c2f8-4ad7-8b3e-0e02749d167e	10	115540376	115540376	A	G	SNP	PLEKHS1	ENST00000369312	human	ensembl	69_37n	+1	known	missense	c.937	p.I313V	0.994	NULL	NULL	-	no_errors	PLEKHS1	HGNC	ENSG00000148735	133	0	0.00	140	24	14.63	-	-	-
PLXNA3	0	genome.wustl.edu	37	X	153688564	153688565	+	Frame_Shift_Ins	INS	-	-	G			TCGA-A8-A08X-01A-21W-A019-09	TCGA-A8-A08X-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	67c7d350-5c82-49b0-a7eb-6ca829ffcbc9	263fb74b-c2f8-4ad7-8b3e-0e02749d167e	X	153688564	153688565	-	G	INS	PLXNA3	ENST00000369682	human	ensembl	69_37n	+1	known	frame_shift_ins	c.41_42	p.A17fs	0.001:0.006	pfscan_Semaphorin/CD100_Ag	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semaphorin/CD100_Ag,pfam_IPT_TIG_rcpt,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_IPT_TIG_rcpt,pfscan_Semaphorin/CD100_Ag	-	no_errors	PLXNA3	HGNC	ENSG00000130827	16	0	0.00	6	3	33.33	-	-	-
POLE2	0	genome.wustl.edu	37	14	50122403	50122403	+	Missense_Mutation	SNP	C	C	T			TCGA-A8-A08X-01A-21W-A019-09	TCGA-A8-A08X-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	67c7d350-5c82-49b0-a7eb-6ca829ffcbc9	263fb74b-c2f8-4ad7-8b3e-0e02749d167e	14	50122403	50122403	C	T	SNP	POLE2	ENST00000216367	human	ensembl	69_37n	-1	known	missense	c.914	p.R305H	0.996	pfam_DNA_pol_alpha/epsilon_bsu,pirsf_DNA_pol_e_bsu	pfam_DNA_pol_alpha/epsilon_bsu,pfam_DNA_pol_e_bsu_N,pirsf_DNA_pol_e_bsu	-	no_errors	POLE2	HGNC	ENSG00000100479	455	0	0.00	281	49	14.85	-	-	-
SERPINE1	0	genome.wustl.edu	37	7	100776989	100776989	+	Silent	SNP	G	G	A			TCGA-A8-A08X-01A-21W-A019-09	TCGA-A8-A08X-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	67c7d350-5c82-49b0-a7eb-6ca829ffcbc9	263fb74b-c2f8-4ad7-8b3e-0e02749d167e	7	100776989	100776989	G	A	SNP	SERPINE1	ENST00000223095	human	ensembl	69_37n	+1	known	silent	c.714	p.T238	0.706	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	-	no_errors	SERPINE1	HGNC	ENSG00000106366	143	0	0.00	232	28	10.77	-	-	-
STAP1	0	genome.wustl.edu	37	4	68449419	68449419	+	Missense_Mutation	SNP	G	G	C			TCGA-A8-A08X-01A-21W-A019-09	TCGA-A8-A08X-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	67c7d350-5c82-49b0-a7eb-6ca829ffcbc9	263fb74b-c2f8-4ad7-8b3e-0e02749d167e	4	68449419	68449419	G	C	SNP	STAP1	ENST00000265404	human	ensembl	69_37n	+1	known	missense	c.658	p.D220H	1.000	pfam_SH2,smart_SH2,pfscan_SH2	pfam_SH2,smart_Pleckstrin_homology,smart_SH2,pfscan_Pleckstrin_homology,pfscan_SH2	-	no_errors	STAP1	HGNC	ENSG00000035720	59	0	0.00	20	8	28.57	-	-	-
SVIL	0	genome.wustl.edu	37	10	29813441	29813441	+	Missense_Mutation	SNP	C	C	T			TCGA-A8-A08X-01A-21W-A019-09	TCGA-A8-A08X-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	67c7d350-5c82-49b0-a7eb-6ca829ffcbc9	263fb74b-c2f8-4ad7-8b3e-0e02749d167e	10	29813441	29813441	C	T	SNP	SVIL	ENST00000355867	human	ensembl	69_37n	-1	known	missense	c.2546	p.R849H	1.000	NULL	pfam_Gelsolin_dom,pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Gelsolin,smart_Villin_headpiece,pfscan_Villin_headpiece,prints_Gelsolin	-	no_errors	SVIL	HGNC	ENSG00000197321	147	0	0.00	166	41	19.81	-	-	-
TET3	0	genome.wustl.edu	37	2	74275539	74275539	+	Splice_Site	SNP	G	G	A			TCGA-A8-A08X-01A-21W-A019-09	TCGA-A8-A08X-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	67c7d350-5c82-49b0-a7eb-6ca829ffcbc9	263fb74b-c2f8-4ad7-8b3e-0e02749d167e	2	74275539	74275539	G	A	SNP	TET3	ENST00000409262	human	ensembl	69_37n	+1	known	splice_site	c.2089+1	e1+1	1.000	-	-	-	no_errors	TET3	HGNC	ENSG00000187605	39	0	0.00	40	6	13.04	-	-	-
TEX13B	0	genome.wustl.edu	37	X	107224730	107224730	+	Silent	SNP	G	G	A			TCGA-A8-A08X-01A-21W-A019-09	TCGA-A8-A08X-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	67c7d350-5c82-49b0-a7eb-6ca829ffcbc9	263fb74b-c2f8-4ad7-8b3e-0e02749d167e	X	107224730	107224730	G	A	SNP	TEX13B	ENST00000302917	human	ensembl	69_37n	-1	known	silent	c.519	p.A173	0.000	NULL	NULL	-	no_errors	TEX13B	HGNC	ENSG00000170925	128	0	0.00	125	28	18.18	-	-	-
TP53	0	genome.wustl.edu	37	17	7578403	7578403	+	Missense_Mutation	SNP	C	C	A			TCGA-A8-A08X-01A-21W-A019-09	TCGA-A8-A08X-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	67c7d350-5c82-49b0-a7eb-6ca829ffcbc9	263fb74b-c2f8-4ad7-8b3e-0e02749d167e	17	7578403	7578403	C	A	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.527	p.C176F	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	82	0	0.00	72	36	33.33	-	-	-
VRTN	0	genome.wustl.edu	37	14	74824804	74824804	+	Missense_Mutation	SNP	C	C	T			TCGA-A8-A08X-01A-21W-A019-09	TCGA-A8-A08X-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	67c7d350-5c82-49b0-a7eb-6ca829ffcbc9	263fb74b-c2f8-4ad7-8b3e-0e02749d167e	14	74824804	74824804	C	T	SNP	VRTN	ENST00000256362	human	ensembl	69_37n	+1	known	missense	c.1318	p.R440W	1.000	NULL	pfam_Transposase_8	-	no_errors	VRTN	HGNC	ENSG00000133980	62	0	0.00	42	16	27.59	-	-	-
