Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
AFF1	0	genome.wustl.edu	37	4	88029432	88029432	+	Missense_Mutation	SNP	G	G	A			TCGA-AC-A3YI-01A-21D-A23C-09	TCGA-AC-A3YI-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52e2b434-5394-4a59-a62f-0e6de07c0539	dd822976-3f35-4194-8c2a-ddaf2408f4a3	4	88029432	88029432	G	A	SNP	AFF1	ENST00000395146	human	ensembl	69_37n	+1	known	missense	c.1498	p.E500K	1.000	pfam_TF_AF4/FMR2	pfam_TF_AF4/FMR2	-	no_errors	AFF1	HGNC	ENSG00000172493	23	0	0.00	24	4	14.29	-	-	-
AGAP4	0	genome.wustl.edu	37	10	46342649	46342649	+	Silent	SNP	T	T	C			TCGA-AC-A3YI-01A-21D-A23C-09	TCGA-AC-A3YI-10A-01D-A23C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52e2b434-5394-4a59-a62f-0e6de07c0539	dd822976-3f35-4194-8c2a-ddaf2408f4a3	10	46342649	46342649	T	C	SNP	AGAP4	ENST00000448048	human	ensembl	69_37n	-1	known	silent	c.147	p.V49	0.177	NULL	pfam_ArfGAP,pfam_Pleckstrin_homology,pfam_Ankyrin_rpt,superfamily_ArfGAP,superfamily_Ankyrin_rpt-contain_dom,smart_Pleckstrin_homology,smart_ArfGAP,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	AGAP4	HGNC	ENSG00000188234	12	0	0.00	10	9	47.37	-	-	-
C1QTNF5	0	genome.wustl.edu	37	11	119210295	119210295	+	Missense_Mutation	SNP	A	A	G			TCGA-AC-A3YI-01A-21D-A23C-09	TCGA-AC-A3YI-10A-01D-A23C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52e2b434-5394-4a59-a62f-0e6de07c0539	dd822976-3f35-4194-8c2a-ddaf2408f4a3	11	119210295	119210295	A	G	SNP	C1QTNF5	ENST00000445041	human	ensembl	69_37n	-1	known	missense	c.478	p.Y160H	1.000	pfam_C1q,superfamily_Tumour_necrosis_fac-like,smart_C1q,prints_C1q,pfscan_C1q	pfam_C1q,pfam_Collagen,superfamily_Tumour_necrosis_fac-like,smart_C1q,prints_C1q,pfscan_C1q	-	no_errors	C1QTNF5	HGNC	ENSG00000223953	114	0	0.00	111	22	16.54	-	-	-
CDH1	0	genome.wustl.edu	37	16	68862200	68862201	+	Frame_Shift_Ins	INS	-	-	G			TCGA-AC-A3YI-01A-21D-A23C-09	TCGA-AC-A3YI-10A-01D-A23C-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52e2b434-5394-4a59-a62f-0e6de07c0539	dd822976-3f35-4194-8c2a-ddaf2408f4a3	16	68862200	68862201	-	G	INS	CDH1	ENST00000261769	human	ensembl	69_37n	+1	known	frame_shift_ins	c.2288_2289	p.D764fs	1.000:0.883	pfam_Cadherin_cytoplasmic-dom	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH1	HGNC	ENSG00000039068	76	0	0.00	88	14	13.73	-	-	-
EP400	0	genome.wustl.edu	37	12	132547141	132547141	+	Silent	SNP	G	G	A			TCGA-AC-A3YI-01A-21D-A23C-09	TCGA-AC-A3YI-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52e2b434-5394-4a59-a62f-0e6de07c0539	dd822976-3f35-4194-8c2a-ddaf2408f4a3	12	132547141	132547141	G	A	SNP	EP400	ENST00000333577	human	ensembl	69_37n	+1	known	silent	c.8337	p.Q2779	0.737	NULL	pfam_SNF2_N,pfam_HSA,pfam_Helicase_C,superfamily_Homeodomain-like,smart_HAS_subgr,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Myb-like_dom,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	EP400	HGNC	ENSG00000183495	42	0	0.00	38	5	11.63	-	-	-
ERBB2	0	genome.wustl.edu	37	17	37880220	37880220	+	Missense_Mutation	SNP	T	T	C			TCGA-AC-A3YI-01A-21D-A23C-09	TCGA-AC-A3YI-10A-01D-A23C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52e2b434-5394-4a59-a62f-0e6de07c0539	dd822976-3f35-4194-8c2a-ddaf2408f4a3	17	37880220	37880220	T	C	SNP	ERBB2	ENST00000269571	human	ensembl	69_37n	+1	known	missense	c.2264	p.L755S	1.000	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_cat_dom,pfam_Furin-like_Cys-rich_dom,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt,smart_Furin_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	ERBB2	HGNC	ENSG00000141736	26	0	0.00	42	7	14.29	-	-	-
EVPLL	0	genome.wustl.edu	37	17	18292454	18292454	+	RNA	SNP	C	C	G			TCGA-AC-A3YI-01A-21D-A23C-09	TCGA-AC-A3YI-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52e2b434-5394-4a59-a62f-0e6de07c0539	dd822976-3f35-4194-8c2a-ddaf2408f4a3	17	18292454	18292454	C	G	SNP	EVPLL	ENST00000583003	human	ensembl	69_37n	+1	putative	rna	NULL	NULL	0.006	-	-	-	no_errors	EVPLL	HGNC	ENSG00000214860	9	0	0.00	6	4	40.00	-	-	-
EXOC4	0	genome.wustl.edu	37	7	132937919	132937919	+	Missense_Mutation	SNP	C	C	T			TCGA-AC-A3YI-01A-21D-A23C-09	TCGA-AC-A3YI-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52e2b434-5394-4a59-a62f-0e6de07c0539	dd822976-3f35-4194-8c2a-ddaf2408f4a3	7	132937919	132937919	C	T	SNP	EXOC4	ENST00000253861	human	ensembl	69_37n	+1	known	missense	c.62	p.S21L	1.000	NULL	pfam_Sec8_exocyst	-	no_errors	EXOC4	HGNC	ENSG00000131558	24	0	0.00	25	6	19.35	-	-	-
IL32	0	genome.wustl.edu	37	16	3131810	3131810	+	Silent	SNP	T	T	C			TCGA-AC-A3YI-01A-21D-A23C-09	TCGA-AC-A3YI-10A-01D-A23C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52e2b434-5394-4a59-a62f-0e6de07c0539	dd822976-3f35-4194-8c2a-ddaf2408f4a3	16	3131810	3131810	T	C	SNP	IL32	ENST00000525377	human	ensembl	69_37n	+1	putative	silent	c.516	p.V172	0.000	NULL	NULL	-	no_stop_codon:bad_bp_length_for_coding_region	IL32	HGNC	ENSG00000008517	25	0	0.00	22	7	24.14	-	-	-
LARP1B	0	genome.wustl.edu	37	4	129143606	129143606	+	RNA	SNP	C	C	T			TCGA-AC-A3YI-01A-21D-A23C-09	TCGA-AC-A3YI-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52e2b434-5394-4a59-a62f-0e6de07c0539	dd822976-3f35-4194-8c2a-ddaf2408f4a3	4	129143606	129143606	C	T	SNP	LARP1B	ENST00000503725	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	LARP1B	HGNC	ENSG00000138709	50	0	0.00	70	10	12.50	-	-	-
LILRB5	0	genome.wustl.edu	37	19	54759985	54759985	+	Missense_Mutation	SNP	C	C	A			TCGA-AC-A3YI-01A-21D-A23C-09	TCGA-AC-A3YI-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52e2b434-5394-4a59-a62f-0e6de07c0539	dd822976-3f35-4194-8c2a-ddaf2408f4a3	19	54759985	54759985	C	A	SNP	LILRB5	ENST00000450632	human	ensembl	69_37n	-1	known	missense	c.549	p.R183S	0.001	smart_Ig_sub	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	LILRB5	HGNC	ENSG00000105609	58	0	0.00	63	7	10.00	-	-	-
MUC16	0	genome.wustl.edu	37	19	9058918	9058918	+	Missense_Mutation	SNP	C	C	T			TCGA-AC-A3YI-01A-21D-A23C-09	TCGA-AC-A3YI-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52e2b434-5394-4a59-a62f-0e6de07c0539	dd822976-3f35-4194-8c2a-ddaf2408f4a3	19	9058918	9058918	C	T	SNP	MUC16	ENST00000397910	human	ensembl	69_37n	-1	known	missense	c.28528	p.E9510K	0.000	NULL	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC16	HGNC	ENSG00000181143	25	0	0.00	47	9	16.07	-	-	-
NAP1L4	0	genome.wustl.edu	37	11	2970465	2970465	+	RNA	SNP	G	G	T			TCGA-AC-A3YI-01A-21D-A23C-09	TCGA-AC-A3YI-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52e2b434-5394-4a59-a62f-0e6de07c0539	dd822976-3f35-4194-8c2a-ddaf2408f4a3	11	2970465	2970465	G	T	SNP	NAP1L4	ENST00000469089	human	ensembl	69_37n	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	NAP1L4	HGNC	ENSG00000205531	35	0	0.00	35	4	10.26	-	-	-
OGFR	0	genome.wustl.edu	37	20	61444600	61444600	+	Missense_Mutation	SNP	C	C	A			TCGA-AC-A3YI-01A-21D-A23C-09	TCGA-AC-A3YI-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52e2b434-5394-4a59-a62f-0e6de07c0539	dd822976-3f35-4194-8c2a-ddaf2408f4a3	20	61444600	61444600	C	A	SNP	OGFR	ENST00000290291	human	ensembl	69_37n	+1	known	missense	c.1633	p.R545S	0.000	pfam_OGF_rcpt_rpt	pfam_OGF_rcpt,pfam_OGF_rcpt_rpt	-	no_errors	OGFR	HGNC	ENSG00000060491	28	0	0.00	26	5	16.13	-	-	-
PLEKHH2	0	genome.wustl.edu	37	2	43927380	43927380	+	Missense_Mutation	SNP	C	C	A			TCGA-AC-A3YI-01A-21D-A23C-09	TCGA-AC-A3YI-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52e2b434-5394-4a59-a62f-0e6de07c0539	dd822976-3f35-4194-8c2a-ddaf2408f4a3	2	43927380	43927380	C	A	SNP	PLEKHH2	ENST00000282406	human	ensembl	69_37n	+1	known	missense	c.1283	p.T428K	0.003	NULL	pfam_Pleckstrin_homology,pfam_MyTH4_dom,pfam_FERM_central,superfamily_FERM_central,smart_Pleckstrin_homology,smart_MyTH4_dom,smart_Band_41_domain,pfscan_FERM_domain,pfscan_MyTH4_dom,pfscan_Pleckstrin_homology	-	no_errors	PLEKHH2	HGNC	ENSG00000152527	44	0	0.00	44	6	12.00	-	-	-
RGS22	0	genome.wustl.edu	37	8	101117734	101117734	+	RNA	SNP	A	A	G			TCGA-AC-A3YI-01A-21D-A23C-09	TCGA-AC-A3YI-10A-01D-A23C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52e2b434-5394-4a59-a62f-0e6de07c0539	dd822976-3f35-4194-8c2a-ddaf2408f4a3	8	101117734	101117734	A	G	SNP	RGS22	ENST00000522064	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RGS22	HGNC	ENSG00000132554	28	0	0.00	34	4	10.53	-	-	-
RPP30	0	genome.wustl.edu	37	10	92655664	92655664	+	Missense_Mutation	SNP	G	G	T			TCGA-AC-A3YI-01A-21D-A23C-09	TCGA-AC-A3YI-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52e2b434-5394-4a59-a62f-0e6de07c0539	dd822976-3f35-4194-8c2a-ddaf2408f4a3	10	92655664	92655664	G	T	SNP	RPP30	ENST00000413330	human	ensembl	69_37n	+1	known	missense	c.607	p.V203L	0.959	pfam_RNase_P_p30,superfamily_Pol/histidinol_Pase-like	pfam_RNase_P_p30,superfamily_Pol/histidinol_Pase-like	-	no_errors	RPP30	HGNC	ENSG00000148688	45	0	0.00	57	7	10.94	-	-	-
UBA6	0	genome.wustl.edu	37	4	68500227	68500227	+	Missense_Mutation	SNP	G	G	T			TCGA-AC-A3YI-01A-21D-A23C-09	TCGA-AC-A3YI-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52e2b434-5394-4a59-a62f-0e6de07c0539	dd822976-3f35-4194-8c2a-ddaf2408f4a3	4	68500227	68500227	G	T	SNP	UBA6	ENST00000322244	human	ensembl	69_37n	-1	known	missense	c.1852	p.P618T	1.000	pfam_Ubiquitin-activating_enzyme,superfamily_Molybdenum_cofac_synth_MoeB,tigrfam_UBQ-activ_enz_E1	pfam_ThiF_NAD_FAD-bd,pfam_Ub-activating_enz_e1_C,pfam_UBact_repeat,pfam_Ubiquitin-activating_enzyme,superfamily_Molybdenum_cofac_synth_MoeB,prints_UBQ/SUMO-activ_enz_E1-like,tigrfam_UBQ-activ_enz_E1	-	no_errors	UBA6	HGNC	ENSG00000033178	41	0	0.00	35	4	10.26	-	-	-
XKR5	0	genome.wustl.edu	37	8	6686791	6686791	+	RNA	SNP	C	C	T			TCGA-AC-A3YI-01A-21D-A23C-09	TCGA-AC-A3YI-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52e2b434-5394-4a59-a62f-0e6de07c0539	dd822976-3f35-4194-8c2a-ddaf2408f4a3	8	6686791	6686791	C	T	SNP	XKR5	ENST00000405979	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	XKR5	HGNC	ENSG00000186530	38	0	0.00	33	4	10.81	-	-	-
ZNF652	0	genome.wustl.edu	37	17	47375975	47375975	+	Missense_Mutation	SNP	G	G	A			TCGA-AC-A3YI-01A-21D-A23C-09	TCGA-AC-A3YI-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52e2b434-5394-4a59-a62f-0e6de07c0539	dd822976-3f35-4194-8c2a-ddaf2408f4a3	17	47375975	47375975	G	A	SNP	ZNF652	ENST00000362063	human	ensembl	69_37n	-1	known	missense	c.1621	p.R541W	0.915	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF652	HGNC	ENSG00000198740	22	0	0.00	13	4	23.53	-	-	-
