Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
AARS	0	genome.wustl.edu	37	16	70293052	70293052	+	Missense_Mutation	SNP	G	G	A			TCGA-AO-A03R-01A-21W-A050-09	TCGA-AO-A03R-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d2dc4e3-f1ed-4ef0-ae83-e09c87756d56	26a53735-9790-4d97-88e9-1c2bf24eb6cb	16	70293052	70293052	G	A	SNP	AARS	ENST00000261772	human	ensembl	69_37n	-1	known	missense	c.1823	p.T608M	1.000	superfamily_Thr/Ala-tRNA-synth_IIc_edit,pfscan_Ala-tRNA-synth_IIc_core,tigrfam_Ala-tRNA-synth_IIc	pfam_Ala-tRNA-synth_IIc_N,pfam_tRNA_SAD,pfam_Pesterase_DHHA1,superfamily_Ala-tRNA-synth_IIc_anticod-bd,superfamily_Thr/Ala-tRNA-synth_IIc_edit,smart_tRNA_SAD,prints_Ala-tRNA-synth_IIc,pfscan_Ala-tRNA-synth_IIc_core,tigrfam_Ala-tRNA-synth_IIc	-	no_errors	AARS	HGNC	ENSG00000090861	162	1	0.61	67	43	39.09	-	-	-
ADPRHL2	0	genome.wustl.edu	37	1	36557572	36557573	+	Frame_Shift_Ins	INS	-	-	A			TCGA-AO-A03R-01A-21W-A050-09	TCGA-AO-A03R-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d2dc4e3-f1ed-4ef0-ae83-e09c87756d56	26a53735-9790-4d97-88e9-1c2bf24eb6cb	1	36557572	36557573	-	A	INS	ADPRHL2	ENST00000373178	human	ensembl	69_37n	+1	known	frame_shift_ins	c.578_579	p.Q194fs	1.000:1.000	pfam_Ribosyl_crysJ1,superfamily_Ribosyl_crysJ1	pfam_Ribosyl_crysJ1,superfamily_Ribosyl_crysJ1	-	no_errors	ADPRHL2	HGNC	ENSG00000116863	141	0	0.00	74	33	30.84	-	-	-
BNC1	0	genome.wustl.edu	37	15	83926358	83926358	+	Missense_Mutation	SNP	C	C	T			TCGA-AO-A03R-01A-21W-A050-09	TCGA-AO-A03R-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d2dc4e3-f1ed-4ef0-ae83-e09c87756d56	26a53735-9790-4d97-88e9-1c2bf24eb6cb	15	83926358	83926358	C	T	SNP	BNC1	ENST00000345382	human	ensembl	69_37n	-1	known	missense	c.2821	p.G941R	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	BNC1	HGNC	ENSG00000169594	165	0	0.00	115	43	27.22	-	-	-
CACNA1E	0	genome.wustl.edu	37	1	181689373	181689373	+	Missense_Mutation	SNP	T	T	C			TCGA-AO-A03R-01A-21W-A050-09	TCGA-AO-A03R-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d2dc4e3-f1ed-4ef0-ae83-e09c87756d56	26a53735-9790-4d97-88e9-1c2bf24eb6cb	1	181689373	181689373	T	C	SNP	CACNA1E	ENST00000367573	human	ensembl	69_37n	+1	known	missense	c.1783	p.S595P	1.000	pfam_Ion_trans_dom,pfam_PKD1_2_channel	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,pfscan_EF_HAND_2,prints_VDCCAlpha1,prints_VDCC_R_a1su	-	no_errors	CACNA1E	HGNC	ENSG00000198216	398	0	0.00	371	113	23.25	-	-	-
CADM3	0	genome.wustl.edu	37	1	159170670	159170670	+	Silent	SNP	C	C	T			TCGA-AO-A03R-01A-21W-A050-09	TCGA-AO-A03R-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d2dc4e3-f1ed-4ef0-ae83-e09c87756d56	26a53735-9790-4d97-88e9-1c2bf24eb6cb	1	159170670	159170670	C	T	SNP	CADM3	ENST00000368124	human	ensembl	69_37n	+1	known	silent	c.1257	p.G419	1.000	NULL	pfam_Ig_I-set,pfam_CD80_C2-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Ig_C1-set,smart_Ig_sub,smart_Ig_sub2,smart_Neurexin-like,pfscan_Ig-like	-	no_errors	CADM3	HGNC	ENSG00000162706	134	0	0.00	115	26	18.31	-	-	-
CD83	0	genome.wustl.edu	37	6	14118244	14118244	+	Missense_Mutation	SNP	C	C	T			TCGA-AO-A03R-01A-21W-A050-09	TCGA-AO-A03R-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d2dc4e3-f1ed-4ef0-ae83-e09c87756d56	26a53735-9790-4d97-88e9-1c2bf24eb6cb	6	14118244	14118244	C	T	SNP	CD83	ENST00000379153	human	ensembl	69_37n	+1	known	missense	c.101	p.P34L	0.993	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,pfscan_Ig-like	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,pfscan_Ig-like	-	no_errors	CD83	HGNC	ENSG00000112149	85	0	0.00	43	9	16.98	-	-	-
F2R	0	genome.wustl.edu	37	5	76028303	76028303	+	Missense_Mutation	SNP	C	C	A			TCGA-AO-A03R-01A-21W-A050-09	TCGA-AO-A03R-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d2dc4e3-f1ed-4ef0-ae83-e09c87756d56	26a53735-9790-4d97-88e9-1c2bf24eb6cb	5	76028303	76028303	C	A	SNP	F2R	ENST00000319211	human	ensembl	69_37n	+1	known	missense	c.253	p.P85T	0.000	NULL	pfam_7TM_GPCR_Rhodpsn,prints_Thrmbn_rcpt,prints_7TM_GPCR_Rhodpsn,prints_Protea_act_rcpt,prints_P2_purnocptor,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	F2R	HGNC	ENSG00000181104	177	0	0.00	100	58	36.71	-	-	-
FAM102A	0	genome.wustl.edu	37	9	130716172	130716172	+	Missense_Mutation	SNP	C	C	A			TCGA-AO-A03R-01A-21W-A050-09	TCGA-AO-A03R-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d2dc4e3-f1ed-4ef0-ae83-e09c87756d56	26a53735-9790-4d97-88e9-1c2bf24eb6cb	9	130716172	130716172	C	A	SNP	FAM102A	ENST00000373095	human	ensembl	69_37n	-1	known	missense	c.179	p.R60L	1.000	pfam_NT-C2	pfam_NT-C2	-	no_errors	FAM102A	HGNC	ENSG00000167106	63	0	0.00	31	12	27.91	-	-	-
FAM9B	0	genome.wustl.edu	37	X	8997417	8997417	+	Silent	SNP	G	G	A			TCGA-AO-A03R-01A-21W-A050-09	TCGA-AO-A03R-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d2dc4e3-f1ed-4ef0-ae83-e09c87756d56	26a53735-9790-4d97-88e9-1c2bf24eb6cb	X	8997417	8997417	G	A	SNP	FAM9B	ENST00000327220	human	ensembl	69_37n	-1	known	silent	c.324	p.V108	0.001	pfam_Cor1/Xlr/Xmr	pfam_Cor1/Xlr/Xmr	-	no_errors	FAM9B	HGNC	ENSG00000177138	478	1	0.21	262	120	31.41	-	-	-
FLYWCH1	0	genome.wustl.edu	37	16	2987149	2987150	+	Frame_Shift_Ins	INS	-	-	G			TCGA-AO-A03R-01A-21W-A050-09	TCGA-AO-A03R-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d2dc4e3-f1ed-4ef0-ae83-e09c87756d56	26a53735-9790-4d97-88e9-1c2bf24eb6cb	16	2987149	2987150	-	G	INS	FLYWCH1	ENST00000399667	human	ensembl	69_37n	+1	known	frame_shift_ins	c.1688_1689	p.S566fs	0.922:0.924	pfam_Znf_FLYWCH	pfam_Znf_FLYWCH	-	no_errors	FLYWCH1	HGNC	ENSG00000059122	28	0	0.00	10	2	16.67	-	-	-
GPC5	0	genome.wustl.edu	37	13	92345580	92345580	+	Silent	SNP	G	G	A			TCGA-AO-A03R-01A-21W-A050-09	TCGA-AO-A03R-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d2dc4e3-f1ed-4ef0-ae83-e09c87756d56	26a53735-9790-4d97-88e9-1c2bf24eb6cb	13	92345580	92345580	G	A	SNP	GPC5	ENST00000377067	human	ensembl	69_37n	+1	known	silent	c.465	p.A155	0.055	pfam_Glypican	pfam_Glypican	-	no_errors	GPC5	HGNC	ENSG00000179399	329	0	0.00	123	72	36.73	-	-	-
GPR128	0	genome.wustl.edu	37	3	100373700	100373700	+	Silent	SNP	A	A	C			TCGA-AO-A03R-01A-21W-A050-09	TCGA-AO-A03R-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d2dc4e3-f1ed-4ef0-ae83-e09c87756d56	26a53735-9790-4d97-88e9-1c2bf24eb6cb	3	100373700	100373700	A	C	SNP	GPR128	ENST00000273352	human	ensembl	69_37n	+1	known	silent	c.1401	p.V467	0.967	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like	pfam_GPCR_2_secretin-like,pfam_GPS_dom,smart_GPS_dom,prints_GPCR_2_secretin-like,pfscan_GPS_dom,pfscan_GPCR_2-like	-	no_errors	GPR128	HGNC	ENSG00000144820	236	0	0.00	183	67	26.80	-	-	-
HCFC2	0	genome.wustl.edu	37	12	104487163	104487163	+	Splice_Site	SNP	G	G	A			TCGA-AO-A03R-01A-21W-A050-09	TCGA-AO-A03R-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d2dc4e3-f1ed-4ef0-ae83-e09c87756d56	26a53735-9790-4d97-88e9-1c2bf24eb6cb	12	104487163	104487163	G	A	SNP	HCFC2	ENST00000229330	human	ensembl	69_37n	+1	known	splice_site	c.1285-1	e10-1	0.859	-	-	-	no_errors	HCFC2	HGNC	ENSG00000111727	151	0	0.00	104	16	13.22	-	-	-
HMCN1	0	genome.wustl.edu	37	1	185902884	185902884	+	Missense_Mutation	SNP	G	G	T			TCGA-AO-A03R-01A-21W-A050-09	TCGA-AO-A03R-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d2dc4e3-f1ed-4ef0-ae83-e09c87756d56	26a53735-9790-4d97-88e9-1c2bf24eb6cb	1	185902884	185902884	G	T	SNP	HMCN1	ENST00000271588	human	ensembl	69_37n	+1	known	missense	c.1756	p.A586S	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_G2_nidogen/fibulin_G2F,pfam_EGF-like_Ca-bd,pfam_Thrombospondin_1_rpt,superfamily_Green_fluorescent_prot-like,superfamily_Thrombospondin_1_rpt,superfamily_Growth_fac_rcpt,superfamily_Cadherin-like,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Thrombospondin_1_rpt,smart_G2_nidogen/fibulin_G2F,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like	-	no_errors	HMCN1	HGNC	ENSG00000143341	156	0	0.00	160	38	19.19	-	-	-
HRNR	0	genome.wustl.edu	37	1	152188994	152188994	+	Missense_Mutation	SNP	C	C	T			TCGA-AO-A03R-01A-21W-A050-09	TCGA-AO-A03R-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d2dc4e3-f1ed-4ef0-ae83-e09c87756d56	26a53735-9790-4d97-88e9-1c2bf24eb6cb	1	152188994	152188994	C	T	SNP	HRNR	ENST00000368801	human	ensembl	69_37n	-1	known	missense	c.5111	p.R1704Q	0.000	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2	-	no_errors	HRNR	HGNC	ENSG00000197915	34	0	0.00	12	3	20.00	-	-	-
HSPD1	0	genome.wustl.edu	37	2	198363534	198363534	+	Silent	SNP	C	C	T			TCGA-AO-A03R-01A-21W-A050-09	TCGA-AO-A03R-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d2dc4e3-f1ed-4ef0-ae83-e09c87756d56	26a53735-9790-4d97-88e9-1c2bf24eb6cb	2	198363534	198363534	C	T	SNP	HSPD1	ENST00000345042	human	ensembl	69_37n	-1	known	silent	c.39	p.P13	0.844	NULL	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,prints_Chaprnin_Cpn60,prints_Chaperone_TCP-1,tigrfam_Chaprnin_Cpn60	-	no_errors	HSPD1	HGNC	ENSG00000144381	49	0	0.00	39	7	15.22	-	-	-
KLHL20	0	genome.wustl.edu	37	1	173703245	173703245	+	Missense_Mutation	SNP	G	G	T			TCGA-AO-A03R-01A-21W-A050-09	TCGA-AO-A03R-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d2dc4e3-f1ed-4ef0-ae83-e09c87756d56	26a53735-9790-4d97-88e9-1c2bf24eb6cb	1	173703245	173703245	G	T	SNP	KLHL20	ENST00000209884	human	ensembl	69_37n	+1	known	missense	c.417	p.Q139H	1.000	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL20	HGNC	ENSG00000076321	219	0	0.00	149	51	25.50	-	-	-
KLHL34	0	genome.wustl.edu	37	X	21675045	21675046	+	Frame_Shift_Ins	INS	-	-	C			TCGA-AO-A03R-01A-21W-A050-09	TCGA-AO-A03R-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d2dc4e3-f1ed-4ef0-ae83-e09c87756d56	26a53735-9790-4d97-88e9-1c2bf24eb6cb	X	21675045	21675046	-	C	INS	KLHL34	ENST00000379499	human	ensembl	69_37n	-1	known	frame_shift_ins	c.862_861	p.R287fs	0.005:0.005	pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL34	HGNC	ENSG00000185915	13	0	0.00	3	2	40.00	-	-	-
LRP1	0	genome.wustl.edu	37	12	57579378	57579379	+	Frame_Shift_Ins	INS	-	-	A			TCGA-AO-A03R-01A-21W-A050-09	TCGA-AO-A03R-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d2dc4e3-f1ed-4ef0-ae83-e09c87756d56	26a53735-9790-4d97-88e9-1c2bf24eb6cb	12	57579378	57579379	-	A	INS	LRP1	ENST00000243077	human	ensembl	69_37n	+1	known	frame_shift_ins	c.6528_6529	p.Q2176fs	0.882:0.965	smart_EGF-like	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like_Ca-bd,smart_EGF-like,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP1	HGNC	ENSG00000123384	31	0	0.00	10	5	33.33	-	-	-
LRP4	0	genome.wustl.edu	37	11	46894758	46894758	+	Silent	SNP	G	G	A			TCGA-AO-A03R-01A-21W-A050-09	TCGA-AO-A03R-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d2dc4e3-f1ed-4ef0-ae83-e09c87756d56	26a53735-9790-4d97-88e9-1c2bf24eb6cb	11	46894758	46894758	G	A	SNP	LRP4	ENST00000378623	human	ensembl	69_37n	-1	known	silent	c.4476	p.H1492	1.000	pfam_LDLR_classB_rpt,smart_LDLR_classB_rpt,pfscan_LDLR_classB_rpt	pfam_LDLR_classB_rpt,pfam_LDrepeatLR_classA_rpt,pfam_EGF-like_Ca-bd,superfamily_Growth_fac_rcpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like,smart_EGF-like_Ca-bd,smart_LDLR_classB_rpt,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP4	HGNC	ENSG00000134569	124	0	0.00	97	27	21.77	-	-	-
LRRTM1	0	genome.wustl.edu	37	2	80530339	80530340	+	Frame_Shift_Ins	INS	-	-	T			TCGA-AO-A03R-01A-21W-A050-09	TCGA-AO-A03R-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d2dc4e3-f1ed-4ef0-ae83-e09c87756d56	26a53735-9790-4d97-88e9-1c2bf24eb6cb	2	80530339	80530340	-	T	INS	LRRTM1	ENST00000295057	human	ensembl	69_37n	-1	known	frame_shift_ins	c.606_605	p.N203fs	1.000:1.000	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRTM1	HGNC	ENSG00000162951	81	0	0.00	46	57	55.34	-	-	-
MAP3K8	0	genome.wustl.edu	37	10	30747137	30747138	+	Frame_Shift_Ins	INS	-	-	C			TCGA-AO-A03R-01A-21W-A050-09	TCGA-AO-A03R-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d2dc4e3-f1ed-4ef0-ae83-e09c87756d56	26a53735-9790-4d97-88e9-1c2bf24eb6cb	10	30747137	30747138	-	C	INS	MAP3K8	ENST00000263056	human	ensembl	69_37n	+1	known	frame_shift_ins	c.998_999	p.S334fs	1.000:0.982	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K8	HGNC	ENSG00000107968	80	0	0.00	45	11	19.64	-	-	-
MRC2	0	genome.wustl.edu	37	17	60743534	60743534	+	Silent	SNP	C	C	T			TCGA-AO-A03R-01A-21W-A050-09	TCGA-AO-A03R-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d2dc4e3-f1ed-4ef0-ae83-e09c87756d56	26a53735-9790-4d97-88e9-1c2bf24eb6cb	17	60743534	60743534	C	T	SNP	MRC2	ENST00000303375	human	ensembl	69_37n	+1	known	silent	c.600	p.G200	0.998	pfam_FN_type2_col-bd,superfamily_Kringle-like,smart_FN_type2_col-bd,pfscan_FN_type2_col-bd	pfam_C-type_lectin,pfam_FN_type2_col-bd,pfam_Herpes_UL45-like,superfamily_C-type_lectin_fold,superfamily_Ricin_B_lectin,superfamily_Kringle-like,smart_Ricin_B_lectin,smart_FN_type2_col-bd,smart_C-type_lectin,prints_AntifreezeII,pfscan_FN_type2_col-bd,pfscan_C-type_lectin,pfscan_Ricin_B_lectin	-	no_errors	MRC2	HGNC	ENSG00000011028	45	0	0.00	18	13	41.94	-	-	-
MUC4	0	genome.wustl.edu	37	3	195510990	195510990	+	Silent	SNP	C	C	T			TCGA-AO-A03R-01A-21W-A050-09	TCGA-AO-A03R-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d2dc4e3-f1ed-4ef0-ae83-e09c87756d56	26a53735-9790-4d97-88e9-1c2bf24eb6cb	3	195510990	195510990	C	T	SNP	MUC4	ENST00000463781	human	ensembl	69_37n	-1	known	silent	c.7461	p.S2487	0.007	NULL	pfam_Nidogen_extracell_dom,pfam_AMOP,pfam_VWF_type-D,smart_Nidogen_extracell_dom,smart_AMOP,smart_VWF_type-D,smart_EGF-like,pfscan_AMOP,pfscan_EG-like_dom	-	no_errors	MUC4	HGNC	ENSG00000145113	38	0	0.00	38	10	17.54	-	-	-
NAV1	0	genome.wustl.edu	37	1	201755667	201755667	+	Missense_Mutation	SNP	C	C	T			TCGA-AO-A03R-01A-21W-A050-09	TCGA-AO-A03R-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d2dc4e3-f1ed-4ef0-ae83-e09c87756d56	26a53735-9790-4d97-88e9-1c2bf24eb6cb	1	201755667	201755667	C	T	SNP	NAV1	ENST00000367296	human	ensembl	69_37n	+1	known	missense	c.2957	p.P986L	1.000	NULL	smart_AAA+_ATPase	-	no_errors	NAV1	HGNC	ENSG00000134369	408	1	0.24	338	47	12.18	-	-	-
NUP133	0	genome.wustl.edu	37	1	229619833	229619833	+	Silent	SNP	C	C	T			TCGA-AO-A03R-01A-21W-A050-09	TCGA-AO-A03R-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d2dc4e3-f1ed-4ef0-ae83-e09c87756d56	26a53735-9790-4d97-88e9-1c2bf24eb6cb	1	229619833	229619833	C	T	SNP	NUP133	ENST00000261396	human	ensembl	69_37n	-1	known	silent	c.1560	p.K520	0.104	NULL	pfam_Nucleoporin_Nup133/Nup155_C,pfam_Nucleoporin_Nup133/Nup155_N	-	no_errors	NUP133	HGNC	ENSG00000069248	588	0	0.00	415	116	21.76	-	-	-
OR10H5	0	genome.wustl.edu	37	19	15905356	15905356	+	Silent	SNP	C	C	T			TCGA-AO-A03R-01A-21W-A050-09	TCGA-AO-A03R-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d2dc4e3-f1ed-4ef0-ae83-e09c87756d56	26a53735-9790-4d97-88e9-1c2bf24eb6cb	19	15905356	15905356	C	T	SNP	OR10H5	ENST00000308940	human	ensembl	69_37n	+1	known	silent	c.498	p.L166	0.342	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR10H5	HGNC	ENSG00000172519	369	0	0.00	302	124	28.97	-	-	-
PCDHGA9	0	genome.wustl.edu	37	5	140783298	140783298	+	Frame_Shift_Del	DEL	G	G	-			TCGA-AO-A03R-01A-21W-A050-09	TCGA-AO-A03R-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d2dc4e3-f1ed-4ef0-ae83-e09c87756d56	26a53735-9790-4d97-88e9-1c2bf24eb6cb	5	140783298	140783298	G	-	DEL	PCDHGA9	ENST00000573521	human	ensembl	69_37n	+1	known	frame_shift_del	c.779	p.W260fs	0.000	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA9	HGNC	ENSG00000261934	32	0	0.00	25	7	21.88	-	-	-
PET112	0	genome.wustl.edu	37	4	152679994	152679994	+	Missense_Mutation	SNP	T	T	G			TCGA-AO-A03R-01A-21W-A050-09	TCGA-AO-A03R-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d2dc4e3-f1ed-4ef0-ae83-e09c87756d56	26a53735-9790-4d97-88e9-1c2bf24eb6cb	4	152679994	152679994	T	G	SNP	PET112	ENST00000263985	human	ensembl	69_37n	-1	known	missense	c.257	p.Q86P	1.000	pfam_Asn/Gln-tRNA_Trfase_suB/E_cat,tigrfam_Gln-tRNA_amidoTrfase_bsu	pfam_Asn/Gln-tRNA_Trfase_suB/E_cat,pfam_Asn/Gln_amidotransferase,superfamily_Asn/Gln_tRNA_amidoTrfrase-rel,smart_Asn/Gln_amidotransferase,tigrfam_Gln-tRNA_amidoTrfase_bsu	-	no_errors	PET112	HGNC	ENSG00000059691	201	0	0.00	151	68	31.05	-	-	-
PI4KB	0	genome.wustl.edu	37	1	151266606	151266606	+	Missense_Mutation	SNP	G	G	A			TCGA-AO-A03R-01A-21W-A050-09	TCGA-AO-A03R-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d2dc4e3-f1ed-4ef0-ae83-e09c87756d56	26a53735-9790-4d97-88e9-1c2bf24eb6cb	1	151266606	151266606	G	A	SNP	PI4KB	ENST00000446339	human	ensembl	69_37n	-1	putative	missense	c.74	p.A25V	0.014	superfamily_Kinase-like_dom	superfamily_Kinase-like_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	PI4KB	HGNC	ENSG00000143393	96	0	0.00	80	24	22.86	-	-	-
PTCD3	0	genome.wustl.edu	37	2	86344259	86344259	+	Missense_Mutation	SNP	G	G	A			TCGA-AO-A03R-01A-21W-A050-09	TCGA-AO-A03R-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d2dc4e3-f1ed-4ef0-ae83-e09c87756d56	26a53735-9790-4d97-88e9-1c2bf24eb6cb	2	86344259	86344259	G	A	SNP	PTCD3	ENST00000254630	human	ensembl	69_37n	+1	known	missense	c.391	p.D131N	1.000	NULL	NULL	-	no_errors	PTCD3	HGNC	ENSG00000132300	188	0	0.00	118	59	33.33	-	-	-
RABEP1	0	genome.wustl.edu	37	17	5238487	5238487	+	Missense_Mutation	SNP	C	C	T			TCGA-AO-A03R-01A-21W-A050-09	TCGA-AO-A03R-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d2dc4e3-f1ed-4ef0-ae83-e09c87756d56	26a53735-9790-4d97-88e9-1c2bf24eb6cb	17	5238487	5238487	C	T	SNP	RABEP1	ENST00000262477	human	ensembl	69_37n	+1	known	missense	c.376	p.R126C	1.000	pfam_Rabaptin_coiled-coil	pfam_Rabaptin_coiled-coil,pfam_Rabaptin_Rab5-bd_dom,prints_Rabaptin	-	no_errors	RABEP1	HGNC	ENSG00000029725	153	0	0.00	53	39	42.39	-	-	-
RYR1	0	genome.wustl.edu	37	19	38946102	38946102	+	Missense_Mutation	SNP	C	C	T			TCGA-AO-A03R-01A-21W-A050-09	TCGA-AO-A03R-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d2dc4e3-f1ed-4ef0-ae83-e09c87756d56	26a53735-9790-4d97-88e9-1c2bf24eb6cb	19	38946102	38946102	C	T	SNP	RYR1	ENST00000359596	human	ensembl	69_37n	+1	known	missense	c.1588	p.R530C	1.000	pfam_Ca-rel_channel	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,superfamily_MG_RAP_rcpt_1,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_MIR_motif	-	no_errors	RYR1	HGNC	ENSG00000196218	1048	0	0.00	691	293	29.66	-	-	-
SLC9A8	0	genome.wustl.edu	37	20	48431650	48431650	+	Silent	SNP	C	C	T			TCGA-AO-A03R-01A-21W-A050-09	TCGA-AO-A03R-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d2dc4e3-f1ed-4ef0-ae83-e09c87756d56	26a53735-9790-4d97-88e9-1c2bf24eb6cb	20	48431650	48431650	C	T	SNP	SLC9A8	ENST00000417961	human	ensembl	69_37n	+1	known	silent	c.132	p.P44	0.000	NULL	pfam_Cation/H_exchanger,prints_NaH_exchanger,tigrfam_NaH_exchanger	-	no_errors	SLC9A8	HGNC	ENSG00000197818	148	0	0.00	78	49	37.98	-	-	-
SORT1	0	genome.wustl.edu	37	1	109888491	109888491	+	Missense_Mutation	SNP	C	C	T			TCGA-AO-A03R-01A-21W-A050-09	TCGA-AO-A03R-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d2dc4e3-f1ed-4ef0-ae83-e09c87756d56	26a53735-9790-4d97-88e9-1c2bf24eb6cb	1	109888491	109888491	C	T	SNP	SORT1	ENST00000256637	human	ensembl	69_37n	-1	known	missense	c.845	p.G282E	1.000	smart_VPS10	pfam_BNR_rpt,smart_VPS10	-	no_errors	SORT1	HGNC	ENSG00000134243	168	0	0.00	121	15	11.03	-	-	-
TCF25	0	genome.wustl.edu	37	16	89964995	89964995	+	Frame_Shift_Del	DEL	G	G	-			TCGA-AO-A03R-01A-21W-A050-09	TCGA-AO-A03R-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d2dc4e3-f1ed-4ef0-ae83-e09c87756d56	26a53735-9790-4d97-88e9-1c2bf24eb6cb	16	89964995	89964995	G	-	DEL	TCF25	ENST00000263346	human	ensembl	69_37n	+1	known	frame_shift_del	c.1053	p.M351fs	1.000	pfam_TCF25	pfam_TCF25	-	no_errors	TCF25	HGNC	ENSG00000141002	13	0	0.00	15	15	50.00	-	-	-
TMEM57	0	genome.wustl.edu	37	1	25824793	25824793	+	Missense_Mutation	SNP	A	A	G			TCGA-AO-A03R-01A-21W-A050-09	TCGA-AO-A03R-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d2dc4e3-f1ed-4ef0-ae83-e09c87756d56	26a53735-9790-4d97-88e9-1c2bf24eb6cb	1	25824793	25824793	A	G	SNP	TMEM57	ENST00000374343	human	ensembl	69_37n	+1	known	missense	c.1831	p.K611E	0.997	pfam_Macoilin	pfam_Macoilin,superfamily_Prefoldin	-	no_errors	TMEM57	HGNC	ENSG00000204178	207	0	0.00	94	58	38.16	-	-	-
TP53	0	genome.wustl.edu	37	17	7577144	7577144	+	Missense_Mutation	SNP	A	A	C			TCGA-AO-A03R-01A-21W-A050-09	TCGA-AO-A03R-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d2dc4e3-f1ed-4ef0-ae83-e09c87756d56	26a53735-9790-4d97-88e9-1c2bf24eb6cb	17	7577144	7577144	A	C	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.794	p.L265R	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	234	0	0.00	104	59	36.20	-	-	-
TPTE2	0	genome.wustl.edu	37	13	20041461	20041461	+	Missense_Mutation	SNP	A	A	G			TCGA-AO-A03R-01A-21W-A050-09	TCGA-AO-A03R-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d2dc4e3-f1ed-4ef0-ae83-e09c87756d56	26a53735-9790-4d97-88e9-1c2bf24eb6cb	13	20041461	20041461	A	G	SNP	TPTE2	ENST00000382977	human	ensembl	69_37n	-1	known	missense	c.416	p.L139S	0.000	pfam_Ion_trans_dom	pfam_Tensin_phosphatase_C2-dom,pfam_Ion_trans_dom,pfam_Dual-sp_phosphatase_cat-dom,superfamily_C2_Ca/lipid-bd_dom_CaLB,pfscan_Tyr/Dual-specificity_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	TPTE2	HGNC	ENSG00000132958	120	0	0.00	40	20	33.33	-	-	-
TRERF1	0	genome.wustl.edu	37	6	42222647	42222647	+	Silent	SNP	C	C	T			TCGA-AO-A03R-01A-21W-A050-09	TCGA-AO-A03R-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d2dc4e3-f1ed-4ef0-ae83-e09c87756d56	26a53735-9790-4d97-88e9-1c2bf24eb6cb	6	42222647	42222647	C	T	SNP	TRERF1	ENST00000541110	human	ensembl	69_37n	-1	known	silent	c.2658	p.L886	1.000	pfscan_ELM2_dom	pfam_ELM2_dom,superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_SANT/Myb,pfscan_ELM2_dom,pfscan_Znf_C2H2	-	no_errors	TRERF1	HGNC	ENSG00000124496	46	0	0.00	63	16	20.25	-	-	-
TTC23L	0	genome.wustl.edu	37	5	34867065	34867065	+	Missense_Mutation	SNP	T	T	A			TCGA-AO-A03R-01A-21W-A050-09	TCGA-AO-A03R-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d2dc4e3-f1ed-4ef0-ae83-e09c87756d56	26a53735-9790-4d97-88e9-1c2bf24eb6cb	5	34867065	34867065	T	A	SNP	TTC23L	ENST00000505624	human	ensembl	69_37n	+1	known	missense	c.731	p.I244N	0.148	NULL	NULL	-	no_errors	TTC23L	HGNC	ENSG00000205838	187	0	0.00	115	52	31.14	-	-	-
URI1	0	genome.wustl.edu	37	19	30500053	30500053	+	Missense_Mutation	SNP	A	A	T			TCGA-AO-A03R-01A-21W-A050-09	TCGA-AO-A03R-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d2dc4e3-f1ed-4ef0-ae83-e09c87756d56	26a53735-9790-4d97-88e9-1c2bf24eb6cb	19	30500053	30500053	A	T	SNP	URI1	ENST00000542441	human	ensembl	69_37n	+1	known	missense	c.828	p.E276D	0.896	NULL	pfam_Prefoldin_subunit,superfamily_Prefoldin	-	no_errors	URI1	HGNC	ENSG00000105176	201	0	0.00	124	38	23.31	-	-	-
ZFP106	0	genome.wustl.edu	37	15	42743536	42743536	+	Missense_Mutation	SNP	C	C	T			TCGA-AO-A03R-01A-21W-A050-09	TCGA-AO-A03R-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d2dc4e3-f1ed-4ef0-ae83-e09c87756d56	26a53735-9790-4d97-88e9-1c2bf24eb6cb	15	42743536	42743536	C	T	SNP	ZFP106	ENST00000263805	human	ensembl	69_37n	-1	known	missense	c.865	p.G289S	0.001	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_Znf_C2H2-like,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	ZFP106	HGNC	ENSG00000103994	302	0	0.00	366	54	12.86	-	-	-
ZNF200	0	genome.wustl.edu	37	16	3274067	3274067	+	Missense_Mutation	SNP	C	C	T			TCGA-AO-A03R-01A-21W-A050-09	TCGA-AO-A03R-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d2dc4e3-f1ed-4ef0-ae83-e09c87756d56	26a53735-9790-4d97-88e9-1c2bf24eb6cb	16	3274067	3274067	C	T	SNP	ZNF200	ENST00000414144	human	ensembl	69_37n	-1	known	missense	c.1013	p.C338Y	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF200	HGNC	ENSG00000010539	80	0	0.00	56	28	33.33	-	-	-
