Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
ACTA2	0	genome.wustl.edu	37	10	90701048	90701048	+	Missense_Mutation	SNP	C	C	T			TCGA-AO-A0JM-01A-21W-A071-09	TCGA-AO-A0JM-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f070142b-f44e-4264-8919-dde7d02ad835	e8905dd3-81d6-424c-8329-33aba5498151	10	90701048	90701048	C	T	SNP	ACTA2	ENST00000224784	human	ensembl	69_37n	-1	known	missense	c.554	p.R185Q	1.000	pfam_Actin-like,smart_Actin-like	pfam_Actin-like,smart_Actin-like,prints_Actin-like	-	no_errors	ACTA2	HGNC	ENSG00000107796	104	0	0.00	66	16	19.51	-	-	-
ADAMTS13	0	genome.wustl.edu	37	9	136319570	136319570	+	Silent	SNP	C	C	T			TCGA-AO-A0JM-01A-21W-A071-09	TCGA-AO-A0JM-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f070142b-f44e-4264-8919-dde7d02ad835	e8905dd3-81d6-424c-8329-33aba5498151	9	136319570	136319570	C	T	SNP	ADAMTS13	ENST00000371929	human	ensembl	69_37n	+1	known	silent	c.3078	p.A1026	1.000	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,superfamily_CUB,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS13	HGNC	ENSG00000160323	22	0	0.00	15	4	21.05	-	-	-
ADAMTS5	0	genome.wustl.edu	37	21	28337771	28337771	+	Missense_Mutation	SNP	C	C	G			TCGA-AO-A0JM-01A-21W-A071-09	TCGA-AO-A0JM-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f070142b-f44e-4264-8919-dde7d02ad835	e8905dd3-81d6-424c-8329-33aba5498151	21	28337771	28337771	C	G	SNP	ADAMTS5	ENST00000284987	human	ensembl	69_37n	-1	known	missense	c.940	p.A314P	1.000	pfam_Peptidase_M12B,pfscan_Peptidase_M12B	pfam_ADAM_spacer1,pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Pept_M12B_ADAM-TS5,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS5	HGNC	ENSG00000154736	98	0	0.00	63	11	14.86	-	-	-
ARHGAP36	0	genome.wustl.edu	37	X	130220600	130220600	+	Missense_Mutation	SNP	C	C	T			TCGA-AO-A0JM-01A-21W-A071-09	TCGA-AO-A0JM-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f070142b-f44e-4264-8919-dde7d02ad835	e8905dd3-81d6-424c-8329-33aba5498151	X	130220600	130220600	C	T	SNP	ARHGAP36	ENST00000276211	human	ensembl	69_37n	+1	known	missense	c.1447	p.R483W	0.001	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP36	HGNC	ENSG00000147256	294	1	0.34	100	18	15.25	-	-	-
ATM	0	genome.wustl.edu	37	11	108235935	108235935	+	Nonsense_Mutation	SNP	C	C	T			TCGA-AO-A0JM-01A-21W-A071-09	TCGA-AO-A0JM-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f070142b-f44e-4264-8919-dde7d02ad835	e8905dd3-81d6-424c-8329-33aba5498151	11	108235935	108235935	C	T	SNP	ATM	ENST00000278616	human	ensembl	69_37n	+1	known	nonsense	c.8977	p.R2993*	1.000	smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_TAN,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	ATM	HGNC	ENSG00000149311	305	0	0.00	82	139	62.90	-	-	-
BRPF3	0	genome.wustl.edu	37	6	36178148	36178148	+	Silent	SNP	T	T	A			TCGA-AO-A0JM-01A-21W-A071-09	TCGA-AO-A0JM-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f070142b-f44e-4264-8919-dde7d02ad835	e8905dd3-81d6-424c-8329-33aba5498151	6	36178148	36178148	T	A	SNP	BRPF3	ENST00000357641	human	ensembl	69_37n	+1	known	silent	c.2022	p.I674	1.000	pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	pfam_Enhancer_polycomb-like_N,pfam_Bromodomain,pfam_PWWP,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_Bromodomain,smart_PWWP,pfscan_PWWP,pfscan_Znf_PHD-finger,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BRPF3	HGNC	ENSG00000096070	87	0	0.00	26	20	43.48	-	-	-
BRPF3	0	genome.wustl.edu	37	6	36178149	36178149	+	Missense_Mutation	SNP	T	T	G			TCGA-AO-A0JM-01A-21W-A071-09	TCGA-AO-A0JM-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f070142b-f44e-4264-8919-dde7d02ad835	e8905dd3-81d6-424c-8329-33aba5498151	6	36178149	36178149	T	G	SNP	BRPF3	ENST00000357641	human	ensembl	69_37n	+1	known	missense	c.2023	p.F675V	1.000	pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	pfam_Enhancer_polycomb-like_N,pfam_Bromodomain,pfam_PWWP,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_Bromodomain,smart_PWWP,pfscan_PWWP,pfscan_Znf_PHD-finger,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BRPF3	HGNC	ENSG00000096070	89	0	0.00	26	19	42.22	-	-	-
C3orf20	0	genome.wustl.edu	37	3	14725873	14725873	+	Silent	SNP	C	C	T			TCGA-AO-A0JM-01A-21W-A071-09	TCGA-AO-A0JM-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f070142b-f44e-4264-8919-dde7d02ad835	e8905dd3-81d6-424c-8329-33aba5498151	3	14725873	14725873	C	T	SNP	C3orf20	ENST00000253697	human	ensembl	69_37n	+1	known	silent	c.609	p.S203	0.000	NULL	NULL	-	no_errors	C3orf20	HGNC	ENSG00000131379	106	1	0.93	72	8	10.00	-	-	-
C7orf53	0	genome.wustl.edu	37	7	112124906	112124906	+	Missense_Mutation	SNP	G	G	A			TCGA-AO-A0JM-01A-21W-A071-09	TCGA-AO-A0JM-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f070142b-f44e-4264-8919-dde7d02ad835	e8905dd3-81d6-424c-8329-33aba5498151	7	112124906	112124906	G	A	SNP	C7orf53	ENST00000312849	human	ensembl	69_37n	+1	known	missense	c.35	p.G12D	0.000	NULL	NULL	-	no_errors	C7orf53	HGNC	ENSG00000181016	240	0	0.00	117	30	20.41	-	-	-
C7orf60	0	genome.wustl.edu	37	7	112462138	112462138	+	Nonsense_Mutation	SNP	C	C	T			TCGA-AO-A0JM-01A-21W-A071-09	TCGA-AO-A0JM-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f070142b-f44e-4264-8919-dde7d02ad835	e8905dd3-81d6-424c-8329-33aba5498151	7	112462138	112462138	C	T	SNP	C7orf60	ENST00000297145	human	ensembl	69_37n	-1	known	nonsense	c.879	p.W293*	1.000	pfam_DUF3321	pfam_DUF3321	-	no_errors	C7orf60	HGNC	ENSG00000164603	138	0	0.00	91	23	20.18	-	-	-
CHST9	0	genome.wustl.edu	37	18	24496830	24496831	+	Frame_Shift_Ins	INS	-	-	A			TCGA-AO-A0JM-01A-21W-A071-09	TCGA-AO-A0JM-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f070142b-f44e-4264-8919-dde7d02ad835	e8905dd3-81d6-424c-8329-33aba5498151	18	24496830	24496831	-	A	INS	CHST9	ENST00000284224	human	ensembl	69_37n	-1	known	frame_shift_ins	c.725_724	p.Y242fs	0.218:0.145	pfam_Sulfotransferase	pfam_Sulfotransferase	-	no_errors	CHST9	HGNC	ENSG00000154080	343	0	0.00	281	72	20.40	-	-	-
DOCK7	0	genome.wustl.edu	37	1	62979249	62979249	+	Missense_Mutation	SNP	C	C	A			TCGA-AO-A0JM-01A-21W-A071-09	TCGA-AO-A0JM-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f070142b-f44e-4264-8919-dde7d02ad835	e8905dd3-81d6-424c-8329-33aba5498151	1	62979249	62979249	C	A	SNP	DOCK7	ENST00000251157	human	ensembl	69_37n	-1	known	missense	c.4148	p.S1383I	1.000	NULL	pfam_DOCK,pfam_DUF3398,superfamily_ARM-type_fold	-	no_errors	DOCK7	HGNC	ENSG00000116641	277	0	0.00	214	47	18.01	-	-	-
EHBP1L1	0	genome.wustl.edu	37	11	65350997	65350998	+	Frame_Shift_Ins	INS	-	-	G			TCGA-AO-A0JM-01A-21W-A071-09	TCGA-AO-A0JM-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f070142b-f44e-4264-8919-dde7d02ad835	e8905dd3-81d6-424c-8329-33aba5498151	11	65350997	65350998	-	G	INS	EHBP1L1	ENST00000309295	human	ensembl	69_37n	+1	known	frame_shift_ins	c.2854_2855	p.A954fs	0.003:0.028	NULL	pfam_DUF3585,pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	-	no_errors	EHBP1L1	HGNC	ENSG00000173442	18	0	0.00	14	2	12.50	-	-	-
FBXO24	0	genome.wustl.edu	37	7	100187289	100187289	+	Missense_Mutation	SNP	G	G	T			TCGA-AO-A0JM-01A-21W-A071-09	TCGA-AO-A0JM-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f070142b-f44e-4264-8919-dde7d02ad835	e8905dd3-81d6-424c-8329-33aba5498151	7	100187289	100187289	G	T	SNP	FBXO24	ENST00000427939	human	ensembl	69_37n	+1	known	missense	c.26	p.R9L	0.000	NULL	pfam_F-box_dom_cyclin-like,pfam_Reg_chr_condens,superfamily_Reg_csome_cond/b-lactamase_inh,superfamily_F-box_dom_cyclin-like,smart_F-box_dom_cyclin-like,pfscan_F-box_dom_cyclin-like,pfscan_Reg_chr_condens	-	no_errors	FBXO24	HGNC	ENSG00000106336	23	0	0.00	4	7	63.64	-	-	-
FBXO27	0	genome.wustl.edu	37	19	39517580	39517580	+	Missense_Mutation	SNP	T	T	C			TCGA-AO-A0JM-01A-21W-A071-09	TCGA-AO-A0JM-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f070142b-f44e-4264-8919-dde7d02ad835	e8905dd3-81d6-424c-8329-33aba5498151	19	39517580	39517580	T	C	SNP	FBXO27	ENST00000292853	human	ensembl	69_37n	-1	known	missense	c.638	p.Q213R	0.360	pfam_F-box-assoc_dom,superfamily_Galactose-bd-like,pfscan_F-box-assoc_dom	pfam_F-box-assoc_dom,pfam_F-box_dom_cyclin-like,superfamily_Galactose-bd-like,superfamily_F-box_dom_cyclin-like,smart_F-box_dom_cyclin-like,pfscan_F-box_dom_cyclin-like,pfscan_F-box-assoc_dom	-	no_errors	FBXO27	HGNC	ENSG00000161243	178	0	0.00	25	42	62.69	-	-	-
FSD1	0	genome.wustl.edu	37	19	4311943	4311943	+	Missense_Mutation	SNP	G	G	A			TCGA-AO-A0JM-01A-21W-A071-09	TCGA-AO-A0JM-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f070142b-f44e-4264-8919-dde7d02ad835	e8905dd3-81d6-424c-8329-33aba5498151	19	4311943	4311943	G	A	SNP	FSD1	ENST00000221856	human	ensembl	69_37n	+1	known	missense	c.595	p.V199M	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_SPRY_rcpt,pfam_Fibronectin_type3,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Bbox_C,smart_Fibronectin_type3,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3	-	no_errors	FSD1	HGNC	ENSG00000105255	20	0	0.00	4	4	50.00	-	-	-
GABRR3	0	genome.wustl.edu	37	3	97726675	97726675	+	Missense_Mutation	SNP	C	C	G			TCGA-AO-A0JM-01A-21W-A071-09	TCGA-AO-A0JM-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f070142b-f44e-4264-8919-dde7d02ad835	e8905dd3-81d6-424c-8329-33aba5498151	3	97726675	97726675	C	G	SNP	GABRR3	ENST00000472788	human	ensembl	69_37n	-1	known	missense	c.687	p.M229I	1.000	NULL	NULL	-	pseudogene	GABRR3	HGNC	ENSG00000183185	71	0	0.00	36	23	38.33	-	-	-
GBE1	0	genome.wustl.edu	37	3	81698093	81698093	+	Missense_Mutation	SNP	G	G	C			TCGA-AO-A0JM-01A-21W-A071-09	TCGA-AO-A0JM-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f070142b-f44e-4264-8919-dde7d02ad835	e8905dd3-81d6-424c-8329-33aba5498151	3	81698093	81698093	G	C	SNP	GBE1	ENST00000429644	human	ensembl	69_37n	-1	known	missense	c.605	p.S202C	1.000	superfamily_Glycoside_hydrolase_SF	pfam_A-amylase_b_C,pfam_Glyco_hydro_13_cat_dom,pfam_Glyco_hydro_13_N,superfamily_Glycoside_hydrolase_SF,superfamily_Ig_E-set,smart_Glyco_hydro_13_sub_cat_dom	-	no_errors	GBE1	HGNC	ENSG00000114480	51	0	0.00	40	9	18.37	-	-	-
GOSR1	0	genome.wustl.edu	37	17	28817222	28817222	+	Nonsense_Mutation	SNP	C	C	T			TCGA-AO-A0JM-01A-21W-A071-09	TCGA-AO-A0JM-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f070142b-f44e-4264-8919-dde7d02ad835	e8905dd3-81d6-424c-8329-33aba5498151	17	28817222	28817222	C	T	SNP	GOSR1	ENST00000225724	human	ensembl	69_37n	+1	known	nonsense	c.427	p.R143*	1.000	NULL	NULL	-	no_errors	GOSR1	HGNC	ENSG00000108587	101	0	0.00	71	20	21.74	-	-	-
GTF3C3	0	genome.wustl.edu	37	2	197662581	197662581	+	Missense_Mutation	SNP	C	C	T			TCGA-AO-A0JM-01A-21W-A071-09	TCGA-AO-A0JM-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f070142b-f44e-4264-8919-dde7d02ad835	e8905dd3-81d6-424c-8329-33aba5498151	2	197662581	197662581	C	T	SNP	GTF3C3	ENST00000263956	human	ensembl	69_37n	-1	known	missense	c.154	p.E52K	0.995	NULL	smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	GTF3C3	HGNC	ENSG00000119041	68	0	0.00	34	14	29.17	-	-	-
GTSE1	0	genome.wustl.edu	37	22	46712078	46712078	+	Missense_Mutation	SNP	G	G	A			TCGA-AO-A0JM-01A-21W-A071-09	TCGA-AO-A0JM-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f070142b-f44e-4264-8919-dde7d02ad835	e8905dd3-81d6-424c-8329-33aba5498151	22	46712078	46712078	G	A	SNP	GTSE1	ENST00000454366	human	ensembl	69_37n	+1	known	missense	c.1201	p.D401N	0.000	NULL	NULL	-	no_errors	GTSE1	HGNC	ENSG00000075218	78	0	0.00	18	38	67.86	-	-	-
MALAT1	0	genome.wustl.edu	37	11	65272844	65272844	+	RNA	SNP	G	G	C			TCGA-AO-A0JM-01A-21W-A071-09	TCGA-AO-A0JM-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f070142b-f44e-4264-8919-dde7d02ad835	e8905dd3-81d6-424c-8329-33aba5498151	11	65272844	65272844	G	C	SNP	MALAT1	ENST00000534336	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.011	-	-	-	no_errors	MALAT1	HGNC	ENSG00000251562	80	0	0.00	153	33	17.74	-	-	-
MALAT1	0	genome.wustl.edu	37	11	65273176	65273176	+	RNA	SNP	G	G	A			TCGA-AO-A0JM-01A-21W-A071-09	TCGA-AO-A0JM-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f070142b-f44e-4264-8919-dde7d02ad835	e8905dd3-81d6-424c-8329-33aba5498151	11	65273176	65273176	G	A	SNP	MALAT1	ENST00000534336	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.274	-	-	-	no_errors	MALAT1	HGNC	ENSG00000251562	174	0	0.00	285	58	16.86	-	-	-
MDM4	0	genome.wustl.edu	37	1	204513770	204513770	+	Silent	SNP	T	T	G			TCGA-AO-A0JM-01A-21W-A071-09	TCGA-AO-A0JM-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f070142b-f44e-4264-8919-dde7d02ad835	e8905dd3-81d6-424c-8329-33aba5498151	1	204513770	204513770	T	G	SNP	MDM4	ENST00000367182	human	ensembl	69_37n	+1	known	silent	c.780	p.T260	0.788	pirsf_p53_neg-reg_MDM_2/4	pfam_SWIB_MDM2_domain,superfamily_SWIB_MDM2_domain,pirsf_p53_neg-reg_MDM_2/4,pfscan_Znf_RanBP2,pfscan_Znf_RING	-	no_errors	MDM4	HGNC	ENSG00000198625	93	0	0.00	75	18	19.35	-	-	-
MTF2	0	genome.wustl.edu	37	1	93594865	93594865	+	Missense_Mutation	SNP	G	G	C			TCGA-AO-A0JM-01A-21W-A071-09	TCGA-AO-A0JM-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f070142b-f44e-4264-8919-dde7d02ad835	e8905dd3-81d6-424c-8329-33aba5498151	1	93594865	93594865	G	C	SNP	MTF2	ENST00000370298	human	ensembl	69_37n	+1	known	missense	c.1020	p.K340N	1.000	NULL	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Tudor,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	MTF2	HGNC	ENSG00000143033	162	0	0.00	140	34	19.54	-	-	-
PHLPP2	0	genome.wustl.edu	37	16	71697861	71697862	+	Frame_Shift_Del	DEL	CC	CC	-			TCGA-AO-A0JM-01A-21W-A071-09	TCGA-AO-A0JM-10A-01W-A071-09	CC	CC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f070142b-f44e-4264-8919-dde7d02ad835	e8905dd3-81d6-424c-8329-33aba5498151	16	71697861	71697862	CC	-	DEL	PHLPP2	ENST00000356272	human	ensembl	69_37n	-1	known	frame_shift_del	c.1926_1925	p.G642fs	0.959:1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_PP2C-like,pfam_Leu-rich_rpt,superfamily_PP2C-like,smart_Leu-rich_rpt_typical-subtyp,smart_PP2C-like	-	no_errors	PHLPP2	HGNC	ENSG00000040199	100	0	0.00	54	7	11.48	-	-	-
PPP1R9A	0	genome.wustl.edu	37	7	94915619	94915619	+	Missense_Mutation	SNP	A	A	C			TCGA-AO-A0JM-01A-21W-A071-09	TCGA-AO-A0JM-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f070142b-f44e-4264-8919-dde7d02ad835	e8905dd3-81d6-424c-8329-33aba5498151	7	94915619	94915619	A	C	SNP	PPP1R9A	ENST00000289495	human	ensembl	69_37n	+1	known	missense	c.3477	p.L1159F	0.091	NULL	pfam_SAM_2,pfam_SAM_type1,pfam_PDZ,superfamily_PDZ,superfamily_SAM/pointed,superfamily_Smac_DIABLO-like,smart_PDZ,smart_SAM,pfscan_PDZ,pfscan_SAM	-	no_errors	PPP1R9A	HGNC	ENSG00000158528	148	0	0.00	93	25	21.19	-	-	-
PRKDC	0	genome.wustl.edu	37	8	48761994	48761994	+	Missense_Mutation	SNP	T	T	G			TCGA-AO-A0JM-01A-21W-A071-09	TCGA-AO-A0JM-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f070142b-f44e-4264-8919-dde7d02ad835	e8905dd3-81d6-424c-8329-33aba5498151	8	48761994	48761994	T	G	SNP	PRKDC	ENST00000314191	human	ensembl	69_37n	-1	known	missense	c.7073	p.K2358T	1.000	superfamily_ARM-type_fold	pfam_NUC194,pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PRKDC	HGNC	ENSG00000253729	252	0	0.00	73	96	56.80	-	-	-
RASSF2	0	genome.wustl.edu	37	20	4776604	4776604	+	Silent	SNP	G	G	A			TCGA-AO-A0JM-01A-21W-A071-09	TCGA-AO-A0JM-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f070142b-f44e-4264-8919-dde7d02ad835	e8905dd3-81d6-424c-8329-33aba5498151	20	4776604	4776604	G	A	SNP	RASSF2	ENST00000379376	human	ensembl	69_37n	-1	known	silent	c.144	p.D48	0.938	NULL	pfam_Ras-assoc,smart_Ras-assoc,pfscan_Ras-assoc,pfscan_SARAH	-	no_errors	RASSF2	HGNC	ENSG00000101265	118	0	0.00	72	16	18.18	-	-	-
SNX6	0	genome.wustl.edu	37	14	35045013	35045013	+	Silent	SNP	G	G	C			TCGA-AO-A0JM-01A-21W-A071-09	TCGA-AO-A0JM-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f070142b-f44e-4264-8919-dde7d02ad835	e8905dd3-81d6-424c-8329-33aba5498151	14	35045013	35045013	G	C	SNP	SNX6	ENST00000362031	human	ensembl	69_37n	-1	known	silent	c.906	p.L302	1.000	pfam_Vps5_C,pfam_BAR_dom,pirsf_Snx5_Snx6	pfam_Phox,pfam_Vps5_C,pfam_BAR_dom,superfamily_Phox,pirsf_Snx5_Snx6,pfscan_Phox	-	no_errors	SNX6	HGNC	ENSG00000129515	71	0	0.00	23	29	55.77	-	-	-
SRCAP	0	genome.wustl.edu	37	16	30718895	30718895	+	Silent	SNP	G	G	A			TCGA-AO-A0JM-01A-21W-A071-09	TCGA-AO-A0JM-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f070142b-f44e-4264-8919-dde7d02ad835	e8905dd3-81d6-424c-8329-33aba5498151	16	30718895	30718895	G	A	SNP	SRCAP	ENST00000262518	human	ensembl	69_37n	+1	known	silent	c.495	p.V165	0.980	pfam_HSA,smart_HAS_subgr,pfscan_Helicase/SANT-assoc_DNA-bd	pfam_SNF2_N,pfam_HSA,pfam_Helicase_C,smart_HAS_subgr,smart_Helicase_ATP-bd,smart_Helicase_C,smart_AT_hook_DNA-bd_motif,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,prints_AT_hook-like	-	no_errors	SRCAP	HGNC	ENSG00000080603	54	0	0.00	37	13	26.00	-	-	-
SRSF5	0	genome.wustl.edu	37	14	70235927	70235927	+	Missense_Mutation	SNP	C	C	T			TCGA-AO-A0JM-01A-21W-A071-09	TCGA-AO-A0JM-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f070142b-f44e-4264-8919-dde7d02ad835	e8905dd3-81d6-424c-8329-33aba5498151	14	70235927	70235927	C	T	SNP	SRSF5	ENST00000451983	human	ensembl	69_37n	+1	known	missense	c.325	p.R109C	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	SRSF5	HGNC	ENSG00000100650	71	0	0.00	59	17	22.37	-	-	-
SYNE2	0	genome.wustl.edu	37	14	64428284	64428284	+	Missense_Mutation	SNP	T	T	A			TCGA-AO-A0JM-01A-21W-A071-09	TCGA-AO-A0JM-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f070142b-f44e-4264-8919-dde7d02ad835	e8905dd3-81d6-424c-8329-33aba5498151	14	64428284	64428284	T	A	SNP	SYNE2	ENST00000358025	human	ensembl	69_37n	+1	known	missense	c.829	p.Y277N	0.994	pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	pfam_CH-domain,pfam_KASH,pfam_Spectrin_repeat,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE2	HGNC	ENSG00000054654	72	0	0.00	45	14	23.73	-	-	-
TFAP2A	0	genome.wustl.edu	37	6	10398921	10398921	+	Missense_Mutation	SNP	A	A	C			TCGA-AO-A0JM-01A-21W-A071-09	TCGA-AO-A0JM-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f070142b-f44e-4264-8919-dde7d02ad835	e8905dd3-81d6-424c-8329-33aba5498151	6	10398921	10398921	A	C	SNP	TFAP2A	ENST00000379604	human	ensembl	69_37n	-1	known	missense	c.1043	p.F348C	1.000	pfam_TF_AP2_C	pfam_TF_AP2_C,prints_TF_AP2_C,prints_TF_AP2_alpha_N	-	no_errors	TFAP2A	HGNC	ENSG00000137203	116	0	0.00	131	20	13.25	-	-	-
WDR69	0	genome.wustl.edu	37	2	228769656	228769656	+	Silent	SNP	C	C	T			TCGA-AO-A0JM-01A-21W-A071-09	TCGA-AO-A0JM-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f070142b-f44e-4264-8919-dde7d02ad835	e8905dd3-81d6-424c-8329-33aba5498151	2	228769656	228769656	C	T	SNP	WDR69	ENST00000309931	human	ensembl	69_37n	+1	known	silent	c.660	p.A220	0.886	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	WDR69	HGNC	ENSG00000123977	265	0	0.00	129	33	20.25	-	-	-
