Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
ARHGEF6	0	genome.wustl.edu	37	X	135827435	135827435	+	Missense_Mutation	SNP	G	G	C			TCGA-AQ-A1H3-01A-31D-A13L-09	TCGA-AQ-A1H3-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fa2017e-ce08-4a16-bdf6-f9bf1296c834	0d4ff5c0-bbfc-46e3-bccf-30b130a954a1	X	135827435	135827435	G	C	SNP	ARHGEF6	ENST00000250617	human	ensembl	69_37n	-1	known	missense	c.406	p.Q136E	0.259	NULL	pfam_DH-domain,pfam_SH3_2,pfam_SH3_domain,pfam_CH-domain,pfam_Pleckstrin_homology,pfam_CAMSAP_CH,superfamily_DH-domain,superfamily_CH-domain,superfamily_SH3_domain,smart_CH-domain,smart_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_CH-domain,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain,prints_SH3_domain,prints_SM22_calponin	-	no_errors	ARHGEF6	HGNC	ENSG00000129675	95	0	0.00	183	79	30.15	-	-	-
C15orf59	0	genome.wustl.edu	37	15	74032293	74032293	+	Missense_Mutation	SNP	T	T	G			TCGA-AQ-A1H3-01A-31D-A13L-09	TCGA-AQ-A1H3-10A-01D-A188-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fa2017e-ce08-4a16-bdf6-f9bf1296c834	0d4ff5c0-bbfc-46e3-bccf-30b130a954a1	15	74032293	74032293	T	G	SNP	C15orf59	ENST00000379822	human	ensembl	69_37n	-1	known	missense	c.847	p.T283P	0.995	NULL	superfamily_Polyketide_synth_docking	-	no_errors	C15orf59	HGNC	ENSG00000205363	29	0	0.00	17	15	46.88	-	-	-
CBFB	0	genome.wustl.edu	37	16	67070640	67070643	+	Frame_Shift_Del	DEL	AGAA	AGAA	-			TCGA-AQ-A1H3-01A-31D-A13L-09	TCGA-AQ-A1H3-10A-01D-A188-09	AGAA	AGAA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fa2017e-ce08-4a16-bdf6-f9bf1296c834	0d4ff5c0-bbfc-46e3-bccf-30b130a954a1	16	67070640	67070643	AGAA	-	DEL	CBFB	ENST00000290858	human	ensembl	69_37n	+1	known	frame_shift_del	c.264_267	p.R90fs	1.000:1.000:1.000:1.000	pfam_CBF_beta,superfamily_CBF_beta	pfam_CBF_beta,superfamily_CBF_beta	-	no_errors	CBFB	HGNC	ENSG00000067955	41	0	0.00	44	26	37.14	-	-	-
CCDC135	0	genome.wustl.edu	37	16	57762336	57762336	+	Missense_Mutation	SNP	T	T	G			TCGA-AQ-A1H3-01A-31D-A13L-09	TCGA-AQ-A1H3-10A-01D-A188-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fa2017e-ce08-4a16-bdf6-f9bf1296c834	0d4ff5c0-bbfc-46e3-bccf-30b130a954a1	16	57762336	57762336	T	G	SNP	CCDC135	ENST00000360716	human	ensembl	69_37n	+1	known	missense	c.2231	p.V744G	0.992	NULL	NULL	-	no_errors	CCDC135	HGNC	ENSG00000159625	13	0	0.00	9	10	52.63	-	-	-
CD33	0	genome.wustl.edu	37	19	51729330	51729330	+	Silent	SNP	C	C	T			TCGA-AQ-A1H3-01A-31D-A13L-09	TCGA-AQ-A1H3-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fa2017e-ce08-4a16-bdf6-f9bf1296c834	0d4ff5c0-bbfc-46e3-bccf-30b130a954a1	19	51729330	51729330	C	T	SNP	CD33	ENST00000262262	human	ensembl	69_37n	+1	known	silent	c.690	p.N230	0.000	smart_Ig_sub	pfam_Ig_V-set,pfam_Immunoglobulin,pfam_CD80_C2-set,smart_Ig_sub,pfscan_Ig-like	-	no_errors	CD33	HGNC	ENSG00000105383	26	0	0.00	33	24	42.11	-	-	-
CDKN1B	0	genome.wustl.edu	37	12	12871006	12871007	+	Frame_Shift_Ins	INS	-	-	GG			TCGA-AQ-A1H3-01A-31D-A13L-09	TCGA-AQ-A1H3-10A-01D-A188-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fa2017e-ce08-4a16-bdf6-f9bf1296c834	0d4ff5c0-bbfc-46e3-bccf-30b130a954a1	12	12871006	12871007	-	GG	INS	CDKN1B	ENST00000228872	human	ensembl	69_37n	+1	known	frame_shift_ins	c.233_234	p.V79fs	0.961:0.979	pfam_CDI	pfam_CDI	-	no_errors	CDKN1B	HGNC	ENSG00000111276	38	0	0.00	34	8	19.05	-	-	-
CHD4	0	genome.wustl.edu	37	12	6702279	6702279	+	Missense_Mutation	SNP	C	C	T			TCGA-AQ-A1H3-01A-31D-A13L-09	TCGA-AQ-A1H3-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fa2017e-ce08-4a16-bdf6-f9bf1296c834	0d4ff5c0-bbfc-46e3-bccf-30b130a954a1	12	6702279	6702279	C	T	SNP	CHD4	ENST00000309577	human	ensembl	69_37n	-1	known	missense	c.2630	p.R877Q	1.000	pfam_SNF2_N,pfam_Helicase/UvrB_dom,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_CHD_C2,pfam_DUF1086,pfam_SNF2_N,pfam_CHD_N,pfam_DUF1087,pfam_Znf_PHD-finger,pfam_Chromo_domain,pfam_Helicase_C,pfam_HDA_complex_subunit-2/3,pfam_Helicase/UvrB_dom,superfamily_Chromodomain-like,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,superfamily_Homeodomain-like,smart_Znf_PHD,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Znf_PHD-finger,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD4	HGNC	ENSG00000111642	29	0	0.00	44	28	38.89	-	-	-
CNTNAP3B	0	genome.wustl.edu	37	9	43822704	43822704	+	Missense_Mutation	SNP	G	G	A			TCGA-AQ-A1H3-01A-31D-A13L-09	TCGA-AQ-A1H3-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fa2017e-ce08-4a16-bdf6-f9bf1296c834	0d4ff5c0-bbfc-46e3-bccf-30b130a954a1	9	43822704	43822704	G	A	SNP	CNTNAP3B	ENST00000377564	human	ensembl	69_37n	+1	known	missense	c.1258	p.V420I	0.009	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,superfamily_ConA-like_lec_gl,superfamily_Fibrinogen_a/b/g_C,smart_Coagulation_fac_5/8-C_type_dom,smart_Laminin_G,smart_EGF-like,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Laminin_G	-	no_errors	CNTNAP3B	HGNC	ENSG00000154529	20	0	0.00	56	14	20.00	-	-	-
COL7A1	0	genome.wustl.edu	37	3	48630811	48630811	+	Silent	SNP	C	C	T			TCGA-AQ-A1H3-01A-31D-A13L-09	TCGA-AQ-A1H3-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fa2017e-ce08-4a16-bdf6-f9bf1296c834	0d4ff5c0-bbfc-46e3-bccf-30b130a954a1	3	48630811	48630811	C	T	SNP	COL7A1	ENST00000328333	human	ensembl	69_37n	-1	known	silent	c.498	p.Q166	0.992	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_Collagen,pfam_Fibronectin_type3,pfam_VWF_A,pfam_Prot_inh_Kunz-m,superfamily_Fibronectin_type3,superfamily_Prot_inh_Kunz-m,smart_VWF_A,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_VWF_A,pfscan_Prot_inh_Kunz-m,prints_Prot_inh_Kunz-m	-	no_errors	COL7A1	HGNC	ENSG00000114270	43	0	0.00	29	12	29.27	-	-	-
CROCCP2	0	genome.wustl.edu	37	1	16950346	16950346	+	RNA	SNP	A	A	C			TCGA-AQ-A1H3-01A-31D-A13L-09	TCGA-AQ-A1H3-10A-01D-A188-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fa2017e-ce08-4a16-bdf6-f9bf1296c834	0d4ff5c0-bbfc-46e3-bccf-30b130a954a1	1	16950346	16950346	A	C	SNP	CROCCP2	ENST00000421700	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	CROCCP2	HGNC	ENSG00000215908	14	0	0.00	18	7	28.00	-	-	-
DUOX2	0	genome.wustl.edu	37	15	45388167	45388167	+	Silent	SNP	G	G	A			TCGA-AQ-A1H3-01A-31D-A13L-09	TCGA-AQ-A1H3-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fa2017e-ce08-4a16-bdf6-f9bf1296c834	0d4ff5c0-bbfc-46e3-bccf-30b130a954a1	15	45388167	45388167	G	A	SNP	DUOX2	ENST00000389039	human	ensembl	69_37n	-1	known	silent	c.3939	p.T1313	0.076	pfam_FAD-bd_8,superfamily_Riboflavin_synthase-like_b-brl	pfam_Haem_peroxidase_animal,pfam_Fe_red_NAD-bd_6,pfam_FAD-bd_8,pfam_Fe3_Rdtase_TM_dom,pfam_EF-hand,superfamily_Haem_peroxidase,superfamily_Riboflavin_synthase-like_b-brl,smart_EF_hand_Ca-bd,prints_Haem_peroxidase_animal_subgr,prints_Recoverin,pfscan_EF_HAND_2,pfscan_Haem_peroxidase_animal	-	no_errors	DUOX2	HGNC	ENSG00000140279	25	0	0.00	27	23	46.00	-	-	-
EXTL3	0	genome.wustl.edu	37	8	28595120	28595120	+	Nonsense_Mutation	SNP	C	C	G			TCGA-AQ-A1H3-01A-31D-A13L-09	TCGA-AQ-A1H3-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fa2017e-ce08-4a16-bdf6-f9bf1296c834	0d4ff5c0-bbfc-46e3-bccf-30b130a954a1	8	28595120	28595120	C	G	SNP	EXTL3	ENST00000220562	human	ensembl	69_37n	+1	known	nonsense	c.2361	p.Y787*	1.000	pfam_HexNAc_Trfase_a	pfam_HexNAc_Trfase_a,pfam_Exostosin	-	no_errors	EXTL3	HGNC	ENSG00000012232	58	0	0.00	98	59	37.34	-	-	-
FGFR1	0	genome.wustl.edu	37	8	38314914	38314914	+	Silent	SNP	T	T	C			TCGA-AQ-A1H3-01A-31D-A13L-09	TCGA-AQ-A1H3-10A-01D-A188-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fa2017e-ce08-4a16-bdf6-f9bf1296c834	0d4ff5c0-bbfc-46e3-bccf-30b130a954a1	8	38314914	38314914	T	C	SNP	FGFR1	ENST00000425967	human	ensembl	69_37n	-1	known	silent	c.150	p.T50	0.968	pirsf_Tyr_kinase_fibroblast_GF_rcpt	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_fibroblast_GF_rcpt,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	FGFR1	HGNC	ENSG00000077782	39	0	0.00	56	17	23.29	-	-	-
GATA2	0	genome.wustl.edu	37	3	128200691	128200691	+	Missense_Mutation	SNP	C	C	T			TCGA-AQ-A1H3-01A-31D-A13L-09	TCGA-AQ-A1H3-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fa2017e-ce08-4a16-bdf6-f9bf1296c834	0d4ff5c0-bbfc-46e3-bccf-30b130a954a1	3	128200691	128200691	C	T	SNP	GATA2	ENST00000341105	human	ensembl	69_37n	-1	known	missense	c.1114	p.A372T	1.000	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	GATA2	HGNC	ENSG00000179348	50	0	0.00	21	5	18.52	-	-	-
HEATR4	0	genome.wustl.edu	37	14	73976100	73976100	+	Missense_Mutation	SNP	G	G	A			TCGA-AQ-A1H3-01A-31D-A13L-09	TCGA-AQ-A1H3-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fa2017e-ce08-4a16-bdf6-f9bf1296c834	0d4ff5c0-bbfc-46e3-bccf-30b130a954a1	14	73976100	73976100	G	A	SNP	HEATR4	ENST00000334988	human	ensembl	69_37n	-1	known	missense	c.1636	p.R546W	0.975	pfam_HEAT,superfamily_ARM-type_fold	pfam_HEAT,superfamily_ARM-type_fold	-	no_errors	HEATR4	HGNC	ENSG00000187105	40	0	0.00	58	28	32.56	-	-	-
INSRR	0	genome.wustl.edu	37	1	156823744	156823744	+	Missense_Mutation	SNP	T	T	A			TCGA-AQ-A1H3-01A-31D-A13L-09	TCGA-AQ-A1H3-10A-01D-A188-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fa2017e-ce08-4a16-bdf6-f9bf1296c834	0d4ff5c0-bbfc-46e3-bccf-30b130a954a1	1	156823744	156823744	T	A	SNP	INSRR	ENST00000368195	human	ensembl	69_37n	-1	known	missense	c.437	p.E146V	1.000	pirsf_Tyr_kinase_insulin-like_rcpt,pfam_EGF_rcpt_L	pirsf_Tyr_kinase_insulin-like_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_cat_dom,pfam_Furin-like_Cys-rich_dom,pfam_Fibronectin_type3,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Growth_fac_rcpt,smart_Furin_repeat,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	INSRR	HGNC	ENSG00000027644	17	0	0.00	6	18	75.00	-	-	-
KIAA2013	0	genome.wustl.edu	37	1	11982841	11982841	+	Missense_Mutation	SNP	T	T	C			TCGA-AQ-A1H3-01A-31D-A13L-09	TCGA-AQ-A1H3-10A-01D-A188-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fa2017e-ce08-4a16-bdf6-f9bf1296c834	0d4ff5c0-bbfc-46e3-bccf-30b130a954a1	1	11982841	11982841	T	C	SNP	KIAA2013	ENST00000376576	human	ensembl	69_37n	-1	known	missense	c.1739	p.D580G	1.000	pfam_DUF2152	pfam_DUF2152	-	no_errors	KIAA2013	HGNC	ENSG00000116685	43	0	0.00	51	10	16.39	-	-	-
LRP1B	0	genome.wustl.edu	37	2	141081609	141081609	+	Missense_Mutation	SNP	T	T	C			TCGA-AQ-A1H3-01A-31D-A13L-09	TCGA-AQ-A1H3-10A-01D-A188-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fa2017e-ce08-4a16-bdf6-f9bf1296c834	0d4ff5c0-bbfc-46e3-bccf-30b130a954a1	2	141081609	141081609	T	C	SNP	LRP1B	ENST00000389484	human	ensembl	69_37n	-1	known	missense	c.12367	p.I4123V	1.000	superfamily_Growth_fac_rcpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EGF-like_dom,superfamily_Growth_fac_rcpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like,smart_EGF-like_Ca-bd,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP1B	HGNC	ENSG00000168702	41	0	0.00	53	22	29.33	-	-	-
MECOM	0	genome.wustl.edu	37	3	168802736	168802736	+	Silent	SNP	C	C	T			TCGA-AQ-A1H3-01A-31D-A13L-09	TCGA-AQ-A1H3-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fa2017e-ce08-4a16-bdf6-f9bf1296c834	0d4ff5c0-bbfc-46e3-bccf-30b130a954a1	3	168802736	168802736	C	T	SNP	MECOM	ENST00000494292	human	ensembl	69_37n	-1	known	silent	c.3654	p.A1218	0.011	NULL	pfam_Znf_C2H2,pfam_Znf_BED_prd,smart_SET_dom,smart_Znf_C2H2-like,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	MECOM	HGNC	ENSG00000085276	63	0	0.00	55	27	32.93	-	-	-
MUC12	0	genome.wustl.edu	37	7	100637074	100637074	+	Missense_Mutation	SNP	G	G	A			TCGA-AQ-A1H3-01A-31D-A13L-09	TCGA-AQ-A1H3-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fa2017e-ce08-4a16-bdf6-f9bf1296c834	0d4ff5c0-bbfc-46e3-bccf-30b130a954a1	7	100637074	100637074	G	A	SNP	MUC12	ENST00000379442	human	ensembl	69_37n	+1	known	missense	c.3659	p.R1220H	0.000	NULL	pfam_SEA	-	no_errors	MUC12	HGNC	ENSG00000205277	12	0	0.00	99	28	22.05	-	-	-
NFIA	0	genome.wustl.edu	37	1	61848997	61848997	+	Silent	SNP	G	G	A			TCGA-AQ-A1H3-01A-31D-A13L-09	TCGA-AQ-A1H3-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fa2017e-ce08-4a16-bdf6-f9bf1296c834	0d4ff5c0-bbfc-46e3-bccf-30b130a954a1	1	61848997	61848997	G	A	SNP	NFIA	ENST00000371189	human	ensembl	69_37n	+1	known	silent	c.1170	p.A390	0.740	pfam_CTF/NFI	pfam_CTF/NFI,pfam_CTF/NFI_DNA-bd_N,pfam_MAD_homology1_Dwarfin-type,smart_MAD_homology1_Dwarfin-type,pfscan_CTF/NFI_DNA-bd-dom	-	no_errors	NFIA	HGNC	ENSG00000162599	61	0	0.00	55	21	27.63	-	-	-
PAPOLB	0	genome.wustl.edu	37	7	4900824	4900824	+	Silent	SNP	C	C	T			TCGA-AQ-A1H3-01A-31D-A13L-09	TCGA-AQ-A1H3-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fa2017e-ce08-4a16-bdf6-f9bf1296c834	0d4ff5c0-bbfc-46e3-bccf-30b130a954a1	7	4900824	4900824	C	T	SNP	PAPOLB	ENST00000404991	human	ensembl	69_37n	-1	known	silent	c.615	p.R205	1.000	pfam_PolA_pol_cen_dom,pirsf_PolyA_polymerase	pfam_PolA_pol_cen_dom,pfam_PolA_pol_RNA-bd_dom,pfam_Nucleotidyltransferase,superfamily_NuclTrfase_I_C,pirsf_PolyA_polymerase	-	no_errors	PAPOLB	HGNC	ENSG00000218823	49	0	0.00	156	104	40.00	-	-	-
PCDHA3	0	genome.wustl.edu	37	5	140180885	140180885	+	Missense_Mutation	SNP	G	G	A			TCGA-AQ-A1H3-01A-31D-A13L-09	TCGA-AQ-A1H3-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fa2017e-ce08-4a16-bdf6-f9bf1296c834	0d4ff5c0-bbfc-46e3-bccf-30b130a954a1	5	140180885	140180885	G	A	SNP	PCDHA3	ENST00000522353	human	ensembl	69_37n	+1	known	missense	c.103	p.V35I	0.046	pfam_Cadherin_N,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHA3	HGNC	ENSG00000255408	44	0	0.00	39	19	32.76	-	-	-
PCDHGA3	0	genome.wustl.edu	37	5	140725928	140725928	+	Silent	SNP	G	G	A			TCGA-AQ-A1H3-01A-31D-A13L-09	TCGA-AQ-A1H3-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fa2017e-ce08-4a16-bdf6-f9bf1296c834	0d4ff5c0-bbfc-46e3-bccf-30b130a954a1	5	140725928	140725928	G	A	SNP	PCDHGA3	ENST00000253812	human	ensembl	69_37n	+1	known	silent	c.2328	p.A776	0.000	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA3	HGNC	ENSG00000254245	65	0	0.00	96	33	25.58	-	-	-
RB1CC1	0	genome.wustl.edu	37	8	53596281	53596281	+	Splice_Site	SNP	T	T	G			TCGA-AQ-A1H3-01A-31D-A13L-09	TCGA-AQ-A1H3-10A-01D-A188-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fa2017e-ce08-4a16-bdf6-f9bf1296c834	0d4ff5c0-bbfc-46e3-bccf-30b130a954a1	8	53596281	53596281	T	G	SNP	RB1CC1	ENST00000025008	human	ensembl	69_37n	-1	known	splice_site	c.199-2	e3-2	1.000	-	-	-	no_errors	RB1CC1	HGNC	ENSG00000023287	18	0	0.00	22	9	29.03	-	-	-
SIX6	0	genome.wustl.edu	37	14	60976319	60976319	+	Missense_Mutation	SNP	G	G	A			TCGA-AQ-A1H3-01A-31D-A13L-09	TCGA-AQ-A1H3-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fa2017e-ce08-4a16-bdf6-f9bf1296c834	0d4ff5c0-bbfc-46e3-bccf-30b130a954a1	14	60976319	60976319	G	A	SNP	SIX6	ENST00000327720	human	ensembl	69_37n	+1	known	missense	c.203	p.R68H	1.000	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	-	no_errors	SIX6	HGNC	ENSG00000184302	27	0	0.00	25	18	41.86	-	-	-
SNX17	0	genome.wustl.edu	37	2	27598768	27598768	+	Missense_Mutation	SNP	G	G	A			TCGA-AQ-A1H3-01A-31D-A13L-09	TCGA-AQ-A1H3-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fa2017e-ce08-4a16-bdf6-f9bf1296c834	0d4ff5c0-bbfc-46e3-bccf-30b130a954a1	2	27598768	27598768	G	A	SNP	SNX17	ENST00000233575	human	ensembl	69_37n	+1	known	missense	c.1034	p.R345H	1.000	NULL	pfam_Phox,superfamily_Phox,superfamily_FERM_central,smart_Phox,pfscan_Phox,pfscan_Ras-assoc	-	no_errors	SNX17	HGNC	ENSG00000115234	42	0	0.00	22	11	33.33	-	-	-
STARD8	0	genome.wustl.edu	37	X	67938428	67938428	+	Missense_Mutation	SNP	C	C	T			TCGA-AQ-A1H3-01A-31D-A13L-09	TCGA-AQ-A1H3-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fa2017e-ce08-4a16-bdf6-f9bf1296c834	0d4ff5c0-bbfc-46e3-bccf-30b130a954a1	X	67938428	67938428	C	T	SNP	STARD8	ENST00000374599	human	ensembl	69_37n	+1	known	missense	c.1672	p.R558W	1.000	NULL	pfam_START_lipid-bd,pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,smart_START_lipid-bd,pfscan_START_lipid-bd,pfscan_RhoGAP_dom	-	no_errors	STARD8	HGNC	ENSG00000130052	30	0	0.00	25	13	34.21	-	-	-
TBX3	0	genome.wustl.edu	37	12	115115438	115115439	+	Frame_Shift_Ins	INS	-	-	T			TCGA-AQ-A1H3-01A-31D-A13L-09	TCGA-AQ-A1H3-10A-01D-A188-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fa2017e-ce08-4a16-bdf6-f9bf1296c834	0d4ff5c0-bbfc-46e3-bccf-30b130a954a1	12	115115438	115115439	-	T	INS	TBX3	ENST00000257566	human	ensembl	69_37n	-1	known	frame_shift_ins	c.888_887	p.N296fs	1.000:1.000	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box	pfam_TF_T-box,pfam_TBX,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box	-	no_errors	TBX3	HGNC	ENSG00000135111	78	0	0.00	169	41	19.52	-	-	-
TCTN1	0	genome.wustl.edu	37	12	111085646	111085646	+	Missense_Mutation	SNP	A	A	C			TCGA-AQ-A1H3-01A-31D-A13L-09	TCGA-AQ-A1H3-10A-01D-A188-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fa2017e-ce08-4a16-bdf6-f9bf1296c834	0d4ff5c0-bbfc-46e3-bccf-30b130a954a1	12	111085646	111085646	A	C	SNP	TCTN1	ENST00000481093	human	ensembl	69_37n	+1	putative	missense	c.167	p.H56P	0.226	NULL	NULL	-	no_stop_codon	TCTN1	HGNC	ENSG00000204852	76	0	0.00	57	25	30.49	-	-	-
