Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
AARS	0	genome.wustl.edu	37	16	70296374	70296374	+	Missense_Mutation	SNP	C	C	A			TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c9253ecc-cfac-4cc5-8dab-1e502d34d103	5554cf4e-b4a0-4938-b5d4-852a5bca8de7	16	70296374	70296374	C	A	SNP	AARS	ENST00000261772	human	ensembl	69_37n	-1	known	missense	c.1546	p.V516L	0.999	pfam_Ala-tRNA-synth_IIc_N,pfscan_Ala-tRNA-synth_IIc_core,tigrfam_Ala-tRNA-synth_IIc	pfam_Ala-tRNA-synth_IIc_N,pfam_tRNA_SAD,pfam_Pesterase_DHHA1,superfamily_Ala-tRNA-synth_IIc_anticod-bd,superfamily_Thr/Ala-tRNA-synth_IIc_edit,smart_tRNA_SAD,prints_Ala-tRNA-synth_IIc,pfscan_Ala-tRNA-synth_IIc_core,tigrfam_Ala-tRNA-synth_IIc	-	no_errors	AARS	HGNC	ENSG00000090861	91	0	0.00	101	20	16.53	-	-	-
ADAM33	0	genome.wustl.edu	37	20	3649962	3649962	+	Silent	SNP	G	G	C			TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c9253ecc-cfac-4cc5-8dab-1e502d34d103	5554cf4e-b4a0-4938-b5d4-852a5bca8de7	20	3649962	3649962	G	C	SNP	ADAM33	ENST00000356518	human	ensembl	69_37n	-1	known	silent	c.2388	p.V796	0.009	NULL	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_EG-like_dom,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin	-	no_errors	ADAM33	HGNC	ENSG00000149451	143	0	0.00	135	18	11.76	-	-	-
AKR1C3	0	genome.wustl.edu	37	10	5141532	5141532	+	Missense_Mutation	SNP	G	G	T			TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c9253ecc-cfac-4cc5-8dab-1e502d34d103	5554cf4e-b4a0-4938-b5d4-852a5bca8de7	10	5141532	5141532	G	T	SNP	AKR1C3	ENST00000380554	human	ensembl	69_37n	+1	known	missense	c.461	p.C154F	0.999	pfam_NADP_OxRdtase_dom,superfamily_NADP_OxRdtase_dom,prints_Aldo/keto_reductase_subgr	pfam_NADP_OxRdtase_dom,superfamily_NADP_OxRdtase_dom,prints_Aldo/keto_reductase_subgr	-	no_errors	AKR1C3	HGNC	ENSG00000196139	226	0	0.00	175	49	21.88	-	-	-
AMPD1	0	genome.wustl.edu	37	1	115236070	115236070	+	Splice_Site	SNP	T	T	A			TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c9253ecc-cfac-4cc5-8dab-1e502d34d103	5554cf4e-b4a0-4938-b5d4-852a5bca8de7	1	115236070	115236070	T	A	SNP	AMPD1	ENST00000520113	human	ensembl	69_37n	-1	known	splice_site	c.122-2	e2-2	1.000	-	-	-	no_errors	AMPD1	HGNC	ENSG00000116748	161	1	0.62	104	13	11.11	-	-	-
ARHGAP29	0	genome.wustl.edu	37	1	94639535	94639535	+	Missense_Mutation	SNP	C	C	A			TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c9253ecc-cfac-4cc5-8dab-1e502d34d103	5554cf4e-b4a0-4938-b5d4-852a5bca8de7	1	94639535	94639535	C	A	SNP	ARHGAP29	ENST00000260526	human	ensembl	69_37n	-1	known	missense	c.3676	p.D1226Y	0.002	NULL	pfam_RhoGAP_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_Rho_GTPase_activation_prot,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_RhoGAP_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RhoGAP_dom	-	no_errors	ARHGAP29	HGNC	ENSG00000137962	102	1	0.97	84	13	13.40	-	-	-
ASH1L	0	genome.wustl.edu	37	1	155313175	155313175	+	Silent	SNP	G	G	A			TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c9253ecc-cfac-4cc5-8dab-1e502d34d103	5554cf4e-b4a0-4938-b5d4-852a5bca8de7	1	155313175	155313175	G	A	SNP	ASH1L	ENST00000368346	human	ensembl	69_37n	-1	known	silent	c.8238	p.L2746	0.818	pfam_BAH_dom,smart_BAH_dom,pfscan_BAH_dom	pfam_SET_dom,pfam_BAH_dom,pfam_Bromodomain,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_AT_hook_DNA-bd_motif,smart_AWS,smart_SET_dom,smart_Bromodomain,smart_Znf_PHD,smart_BAH_dom,pfscan_AWS,pfscan_BAH_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Bromodomain	-	no_errors	ASH1L	HGNC	ENSG00000116539	188	0	0.00	233	36	13.33	-	-	-
ASIC5	0	genome.wustl.edu	37	4	156764876	156764876	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c9253ecc-cfac-4cc5-8dab-1e502d34d103	5554cf4e-b4a0-4938-b5d4-852a5bca8de7	4	156764876	156764876	G	A	SNP	ASIC5	ENST00000537611	human	ensembl	69_37n	-1	known	missense	c.818	p.S273L	0.267	pfam_Na+channel_ASC	pfam_Na+channel_ASC,prints_Na+channel_ASC	-	no_errors	ASIC5	HGNC	ENSG00000256394	86	0	0.00	67	10	12.99	-	-	-
C8orf31	0	genome.wustl.edu	37	8	144126108	144126108	+	Missense_Mutation	SNP	G	G	C			TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c9253ecc-cfac-4cc5-8dab-1e502d34d103	5554cf4e-b4a0-4938-b5d4-852a5bca8de7	8	144126108	144126108	G	C	SNP	C8orf31	ENST00000395172	human	ensembl	69_37n	+1	known	missense	c.229	p.D77H	0.000	NULL	NULL	-	no_errors	C8orf31	HGNC	ENSG00000177335	33	0	0.00	72	11	13.25	-	-	-
CACNA1B	0	genome.wustl.edu	37	9	140970313	140970313	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c9253ecc-cfac-4cc5-8dab-1e502d34d103	5554cf4e-b4a0-4938-b5d4-852a5bca8de7	9	140970313	140970313	C	T	SNP	CACNA1B	ENST00000371355	human	ensembl	69_37n	+1	known	missense	c.4903	p.R1635C	1.000	pfam_Ion_trans_dom,pfam_PKD1_2_channel	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,pfscan_EF_HAND_2,prints_VDCCAlpha1,prints_VDCC_N_a1su,prints_PKD_2	-	no_errors	CACNA1B	HGNC	ENSG00000148408	116	1	0.85	56	19	25.33	-	-	-
CDCA2	0	genome.wustl.edu	37	8	25365051	25365051	+	Missense_Mutation	SNP	C	C	G			TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c9253ecc-cfac-4cc5-8dab-1e502d34d103	5554cf4e-b4a0-4938-b5d4-852a5bca8de7	8	25365051	25365051	C	G	SNP	CDCA2	ENST00000330560	human	ensembl	69_37n	+1	known	missense	c.2869	p.P957A	0.000	NULL	NULL	-	no_errors	CDCA2	HGNC	ENSG00000184661	116	0	0.00	59	9	13.24	-	-	-
CDKL5	0	genome.wustl.edu	37	X	18631363	18631363	+	Missense_Mutation	SNP	C	C	A			TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c9253ecc-cfac-4cc5-8dab-1e502d34d103	5554cf4e-b4a0-4938-b5d4-852a5bca8de7	X	18631363	18631363	C	A	SNP	CDKL5	ENST00000379989	human	ensembl	69_37n	+1	known	missense	c.2244	p.N748K	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CDKL5	HGNC	ENSG00000008086	246	0	0.00	155	28	15.30	-	-	-
CENPE	0	genome.wustl.edu	37	4	104098112	104098112	+	Missense_Mutation	SNP	T	T	G			TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c9253ecc-cfac-4cc5-8dab-1e502d34d103	5554cf4e-b4a0-4938-b5d4-852a5bca8de7	4	104098112	104098112	T	G	SNP	CENPE	ENST00000265148	human	ensembl	69_37n	-1	known	missense	c.1334	p.N445T	0.000	NULL	pfam_Kinesin_motor_dom,superfamily_STAT_TF_coiled-coil,superfamily_Signal_recog_particl_SRP54_hlx,smart_Kinesin_motor_dom,prints_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	-	no_errors	CENPE	HGNC	ENSG00000138778	463	0	0.00	266	62	18.90	-	-	-
CHD9	0	genome.wustl.edu	37	16	53338403	53338403	+	Missense_Mutation	SNP	G	G	C			TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c9253ecc-cfac-4cc5-8dab-1e502d34d103	5554cf4e-b4a0-4938-b5d4-852a5bca8de7	16	53338403	53338403	G	C	SNP	CHD9	ENST00000398510	human	ensembl	69_37n	+1	known	missense	c.6485	p.G2162A	1.000	NULL	pfam_SNF2_N,pfam_BRK_domain,pfam_Chromo_domain,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD9	HGNC	ENSG00000177200	446	0	0.00	292	42	12.57	-	-	-
COL6A5	0	genome.wustl.edu	37	3	130098667	130098667	+	Silent	SNP	G	G	A			TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c9253ecc-cfac-4cc5-8dab-1e502d34d103	5554cf4e-b4a0-4938-b5d4-852a5bca8de7	3	130098667	130098667	G	A	SNP	COL6A5	ENST00000265379	human	ensembl	69_37n	+1	known	silent	c.1074	p.A358	0.000	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_Collagen,smart_VWF_A,pfscan_VWF_A	-	no_errors	COL6A5	HGNC	ENSG00000172752	91	0	0.00	49	13	20.97	-	-	-
DCHS2	0	genome.wustl.edu	37	4	155287566	155287566	+	Frame_Shift_Del	DEL	G	G	-			TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c9253ecc-cfac-4cc5-8dab-1e502d34d103	5554cf4e-b4a0-4938-b5d4-852a5bca8de7	4	155287566	155287566	G	-	DEL	DCHS2	ENST00000357232	human	ensembl	69_37n	-1	known	frame_shift_del	c.490	p.R164fs	1.000	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_HTH_CenpB_DNA-bd_dom,superfamily_Cadherin-like,superfamily_Homeodomain-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	DCHS2	HGNC	ENSG00000197410	92	0	0.00	103	22	17.05	-	-	-
ERI2	0	genome.wustl.edu	37	16	20812611	20812611	+	Missense_Mutation	SNP	T	T	A			TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c9253ecc-cfac-4cc5-8dab-1e502d34d103	5554cf4e-b4a0-4938-b5d4-852a5bca8de7	16	20812611	20812611	T	A	SNP	ERI2	ENST00000357967	human	ensembl	69_37n	-1	known	missense	c.374	p.Q125L	1.000	pfam_Exonuclease_RNaseT/DNA_pol3,superfamily_RNaseH-like_dom,smart_Exonuclease	pfam_Exonuclease_RNaseT/DNA_pol3,pfam_Znf_GRF,superfamily_RNaseH-like_dom,smart_Exonuclease	-	no_errors	ERI2	HGNC	ENSG00000196678	120	0	0.00	59	12	16.90	-	-	-
ERN2	0	genome.wustl.edu	37	16	23711935	23711935	+	Missense_Mutation	SNP	A	A	T			TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c9253ecc-cfac-4cc5-8dab-1e502d34d103	5554cf4e-b4a0-4938-b5d4-852a5bca8de7	16	23711935	23711935	A	T	SNP	ERN2	ENST00000256797	human	ensembl	69_37n	-1	known	missense	c.1594	p.S532T	0.002	NULL	pfam_KEN_RNase_activator,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Quinonprotein_ADH-like,smart_PQQ_beta_propeller_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_PUG-dom,pfscan_Prot_kinase_cat_dom	-	no_errors	ERN2	HGNC	ENSG00000134398	79	0	0.00	49	10	16.95	-	-	-
HLA-A	0	genome.wustl.edu	37	6	29912153	29912153	+	Missense_Mutation	SNP	A	A	G			TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c9253ecc-cfac-4cc5-8dab-1e502d34d103	5554cf4e-b4a0-4938-b5d4-852a5bca8de7	6	29912153	29912153	A	G	SNP	HLA-A	ENST00000376806	human	ensembl	69_37n	+1	known	missense	c.874	p.K292E	0.213	pfam_Ig_C1-set,smart_Ig_C1-set,pfscan_Ig-like	pfam_MHC_I_a_a1/a2,pfam_Ig_C1-set,pfam_MHC_I_a_C,superfamily_MHC_I/II-like_Ag-recog,smart_Ig_C1-set,pfscan_Ig-like,prints_MHC_I_a_a1/a2	-	no_errors	HLA-A	HGNC	ENSG00000206503	32	0	0.00	53	8	13.11	-	-	-
HPS3	0	genome.wustl.edu	37	3	148875176	148875176	+	Missense_Mutation	SNP	A	A	C			TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c9253ecc-cfac-4cc5-8dab-1e502d34d103	5554cf4e-b4a0-4938-b5d4-852a5bca8de7	3	148875176	148875176	A	C	SNP	HPS3	ENST00000296051	human	ensembl	69_37n	+1	known	missense	c.1549	p.S517R	1.000	pirsf_BLOC-2_complex_Hps3_subunit	pirsf_BLOC-2_complex_Hps3_subunit	-	no_errors	HPS3	HGNC	ENSG00000163755	163	0	0.00	121	16	11.68	-	-	-
HSPA2	0	genome.wustl.edu	37	14	65007625	65007625	+	Missense_Mutation	SNP	G	G	T			TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c9253ecc-cfac-4cc5-8dab-1e502d34d103	5554cf4e-b4a0-4938-b5d4-852a5bca8de7	14	65007625	65007625	G	T	SNP	HSPA2	ENST00000247207	human	ensembl	69_37n	+1	known	missense	c.58	p.G20W	1.000	pfam_Hsp_70_fam	pfam_Hsp_70_fam,pfam_MreB_Mrl,prints_Hsp_70_fam	-	no_errors	HSPA2	HGNC	ENSG00000126803	38	0	0.00	30	5	14.29	-	-	-
LIPG	0	genome.wustl.edu	37	18	47093896	47093896	+	Missense_Mutation	SNP	G	G	C			TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c9253ecc-cfac-4cc5-8dab-1e502d34d103	5554cf4e-b4a0-4938-b5d4-852a5bca8de7	18	47093896	47093896	G	C	SNP	LIPG	ENST00000261292	human	ensembl	69_37n	+1	known	missense	c.364	p.D122H	1.000	pfam_Lipase_N,pirsf_Lipoprotein_lipase_LIPH,prints_Lipase	pfam_Lipase_N,pfam_LipOase_LH2,superfamily_Lipase_LipOase,smart_LipOase_LH2,pirsf_Lipoprotein_lipase_LIPH,prints_Lipase,prints_Lipo_Lipase,prints_Lipase_hep,pfscan_LipOase_LH2	-	no_errors	LIPG	HGNC	ENSG00000101670	94	0	0.00	73	11	13.10	-	-	-
NCR1	0	genome.wustl.edu	37	19	55417945	55417945	+	Silent	SNP	G	G	A			TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c9253ecc-cfac-4cc5-8dab-1e502d34d103	5554cf4e-b4a0-4938-b5d4-852a5bca8de7	19	55417945	55417945	G	A	SNP	NCR1	ENST00000291890	human	ensembl	69_37n	+1	known	silent	c.135	p.V45	0.000	smart_Ig_sub	smart_Ig_sub	-	no_errors	NCR1	HGNC	ENSG00000189430	76	0	0.00	59	9	13.24	-	-	-
PIGQ	0	genome.wustl.edu	37	16	625917	625917	+	Missense_Mutation	SNP	C	C	A			TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c9253ecc-cfac-4cc5-8dab-1e502d34d103	5554cf4e-b4a0-4938-b5d4-852a5bca8de7	16	625917	625917	C	A	SNP	PIGQ	ENST00000026218	human	ensembl	69_37n	+1	known	missense	c.768	p.H256Q	0.998	NULL	pfam_GlcNAc_Gpi1	-	no_errors	PIGQ	HGNC	ENSG00000007541	45	0	0.00	52	9	14.75	-	-	-
PIK3C2B	0	genome.wustl.edu	37	1	204408104	204408104	+	Missense_Mutation	SNP	A	A	G			TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c9253ecc-cfac-4cc5-8dab-1e502d34d103	5554cf4e-b4a0-4938-b5d4-852a5bca8de7	1	204408104	204408104	A	G	SNP	PIK3C2B	ENST00000367187	human	ensembl	69_37n	-1	known	missense	c.3475	p.W1159R	1.000	pfam_PI3/4_kinase_cat_dom,superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PI3/4_kinase_cat_dom,pfam_PInositide-3_kin_accessory_dom,pfam_PI3K_C2_dom,pfam_PI3K_Ras-bd_dom,pfam_Phox,pfam_C2_Ca-dep,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_Phox,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,smart_Phox,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_Phox,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3C2B	HGNC	ENSG00000133056	80	0	0.00	64	16	20.00	-	-	-
RAB1A	0	genome.wustl.edu	37	2	65315732	65315732	+	Missense_Mutation	SNP	C	C	G			TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c9253ecc-cfac-4cc5-8dab-1e502d34d103	5554cf4e-b4a0-4938-b5d4-852a5bca8de7	2	65315732	65315732	C	G	SNP	RAB1A	ENST00000409784	human	ensembl	69_37n	-1	known	missense	c.513	p.E171D	1.000	pfam_Small_GTPase,smart_Small_GTPase_ARF,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,pfam_ProtSyn_GTP-bd,pfam_SRP_receptor_beta_su,smart_Small_GTPase_ARF,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB1A	HGNC	ENSG00000138069	153	0	0.00	81	20	19.80	-	-	-
RBM12B	0	genome.wustl.edu	37	8	94748065	94748065	+	Nonsense_Mutation	SNP	G	G	A			TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c9253ecc-cfac-4cc5-8dab-1e502d34d103	5554cf4e-b4a0-4938-b5d4-852a5bca8de7	8	94748065	94748065	G	A	SNP	RBM12B	ENST00000399300	human	ensembl	69_37n	-1	known	nonsense	c.574	p.R192*	0.998	smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM12B	HGNC	ENSG00000183808	162	0	0.00	124	17	12.06	-	-	-
RCAN3	0	genome.wustl.edu	37	1	24859683	24859683	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c9253ecc-cfac-4cc5-8dab-1e502d34d103	5554cf4e-b4a0-4938-b5d4-852a5bca8de7	1	24859683	24859683	C	T	SNP	RCAN3	ENST00000482807	human	ensembl	69_37n	+1	known	missense	c.80	p.A27V	0.082	pfam_Calcipressin	pfam_Calcipressin	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	RCAN3	HGNC	ENSG00000117602	139	0	0.00	117	17	12.69	-	-	-
RGS20	0	genome.wustl.edu	37	8	54791869	54791869	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c9253ecc-cfac-4cc5-8dab-1e502d34d103	5554cf4e-b4a0-4938-b5d4-852a5bca8de7	8	54791869	54791869	G	A	SNP	RGS20	ENST00000297313	human	ensembl	69_37n	+1	known	missense	c.217	p.G73S	0.001	NULL	pfam_Regulat_G_prot_signal,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal,prints_Regulat_G_prot_signal,pfscan_Regulat_G_prot_signal	-	no_errors	RGS20	HGNC	ENSG00000147509	51	0	0.00	21	7	25.00	-	-	-
SELL	0	genome.wustl.edu	37	1	169673765	169673765	+	Missense_Mutation	SNP	T	T	C			TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c9253ecc-cfac-4cc5-8dab-1e502d34d103	5554cf4e-b4a0-4938-b5d4-852a5bca8de7	1	169673765	169673765	T	C	SNP	SELL	ENST00000236147	human	ensembl	69_37n	-1	known	missense	c.749	p.E250G	0.000	pirsf_L-selectin,pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP,prints_Selectin_superfamily	pirsf_L-selectin,pfam_C-type_lectin,pfam_Sushi_SCR_CCP,pfam_EGF-like_dom,superfamily_C-type_lectin_fold,superfamily_Complement_control_module,smart_C-type_lectin,smart_EGF-like,smart_Sushi_SCR_CCP,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Sushi_SCR_CCP,prints_Selectin_superfamily	-	no_errors	SELL	HGNC	ENSG00000188404	131	0	0.00	98	21	17.65	-	-	-
SERINC1	0	genome.wustl.edu	37	6	122775305	122775305	+	Missense_Mutation	SNP	A	A	G			TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c9253ecc-cfac-4cc5-8dab-1e502d34d103	5554cf4e-b4a0-4938-b5d4-852a5bca8de7	6	122775305	122775305	A	G	SNP	SERINC1	ENST00000339697	human	ensembl	69_37n	-1	known	missense	c.442	p.F148L	1.000	pfam_TMS_TDE	pfam_TMS_TDE	-	no_errors	SERINC1	HGNC	ENSG00000111897	92	0	0.00	76	11	12.64	-	-	-
SLITRK1	0	genome.wustl.edu	37	13	84454496	84454496	+	Missense_Mutation	SNP	G	G	C			TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c9253ecc-cfac-4cc5-8dab-1e502d34d103	5554cf4e-b4a0-4938-b5d4-852a5bca8de7	13	84454496	84454496	G	C	SNP	SLITRK1	ENST00000377084	human	ensembl	69_37n	-1	known	missense	c.1147	p.R383G	0.996	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	SLITRK1	HGNC	ENSG00000178235	80	0	0.00	91	14	13.33	-	-	-
SMC6	0	genome.wustl.edu	37	2	17902510	17902510	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c9253ecc-cfac-4cc5-8dab-1e502d34d103	5554cf4e-b4a0-4938-b5d4-852a5bca8de7	2	17902510	17902510	G	A	SNP	SMC6	ENST00000381272	human	ensembl	69_37n	-1	known	missense	c.823	p.R275C	1.000	NULL	NULL	-	no_errors	SMC6	HGNC	ENSG00000163029	178	0	0.00	104	34	24.64	-	-	-
SUB1	0	genome.wustl.edu	37	5	32601185	32601185	+	Silent	SNP	C	C	T			TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c9253ecc-cfac-4cc5-8dab-1e502d34d103	5554cf4e-b4a0-4938-b5d4-852a5bca8de7	5	32601185	32601185	C	T	SNP	SUB1	ENST00000265073	human	ensembl	69_37n	+1	known	silent	c.379	p.L127	1.000	superfamily_ssDNA-bd_transcriptional_reg	pfam_PC4,superfamily_ssDNA-bd_transcriptional_reg	-	no_errors	SUB1	HGNC	ENSG00000113387	222	0	0.00	153	24	13.56	-	-	-
SYT9	0	genome.wustl.edu	37	11	7335088	7335088	+	Missense_Mutation	SNP	C	C	A			TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c9253ecc-cfac-4cc5-8dab-1e502d34d103	5554cf4e-b4a0-4938-b5d4-852a5bca8de7	11	7335088	7335088	C	A	SNP	SYT9	ENST00000524820	human	ensembl	69_37n	+1	known	missense	c.817	p.P273T	1.000	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,prints_Synaptotagmin,pfscan_C2_membr_targeting	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,prints_Synaptotagmin,prints_C2_dom,pfscan_C2_membr_targeting	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	SYT9	HGNC	ENSG00000170743	183	0	0.00	146	27	15.61	-	-	-
TP53	0	genome.wustl.edu	37	17	7578257	7578257	+	Nonsense_Mutation	SNP	C	C	A			TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c9253ecc-cfac-4cc5-8dab-1e502d34d103	5554cf4e-b4a0-4938-b5d4-852a5bca8de7	17	7578257	7578257	C	A	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	nonsense	c.592	p.E198*	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	156	0	0.00	119	36	23.23	-	-	-
TSC2	0	genome.wustl.edu	37	16	2136343	2136343	+	Missense_Mutation	SNP	C	C	A			TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c9253ecc-cfac-4cc5-8dab-1e502d34d103	5554cf4e-b4a0-4938-b5d4-852a5bca8de7	16	2136343	2136343	C	A	SNP	TSC2	ENST00000569110	human	ensembl	69_37n	+1	novel	missense	c.994	p.P332T	0.994	pfam_Rap_GAP,pfscan_Rap_GAP	pfam_Rap_GAP,pfscan_Rap_GAP	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	TSC2	HGNC	ENSG00000103197	43	0	0.00	28	9	24.32	-	-	-
TUBBP5	0	genome.wustl.edu	37	9	141069885	141069885	+	RNA	SNP	A	A	C			TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c9253ecc-cfac-4cc5-8dab-1e502d34d103	5554cf4e-b4a0-4938-b5d4-852a5bca8de7	9	141069885	141069885	A	C	SNP	TUBBP5	ENST00000290377	human	ensembl	69_37n	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	TUBBP5	HGNC	ENSG00000159247	23	0	0.00	19	7	26.92	-	-	-
UBR2	0	genome.wustl.edu	37	6	42629951	42629951	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c9253ecc-cfac-4cc5-8dab-1e502d34d103	5554cf4e-b4a0-4938-b5d4-852a5bca8de7	6	42629951	42629951	G	A	SNP	UBR2	ENST00000372899	human	ensembl	69_37n	+1	known	missense	c.3472	p.D1158N	0.994	NULL	pfam_ClpS_core,pfam_Znf_N-recognin,superfamily_Ribosomal_L7/12_C/ClpS-like,smart_Znf_N-recognin_met,pfscan_Znf_N-recognin	-	no_errors	UBR2	HGNC	ENSG00000024048	226	0	0.00	213	33	13.41	-	-	-
USP21	0	genome.wustl.edu	37	1	161134356	161134356	+	Frame_Shift_Del	DEL	T	T	-			TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c9253ecc-cfac-4cc5-8dab-1e502d34d103	5554cf4e-b4a0-4938-b5d4-852a5bca8de7	1	161134356	161134356	T	-	DEL	USP21	ENST00000289865	human	ensembl	69_37n	+1	known	frame_shift_del	c.1338	p.S446fs	1.000	pfam_Peptidase_C19,pfscan_Peptidase_C19	pfam_Peptidase_C19,pfscan_Peptidase_C19	-	no_errors	USP21	HGNC	ENSG00000143258	82	0	0.00	57	17	22.37	-	-	-
WWP2	0	genome.wustl.edu	37	16	69922069	69922069	+	Silent	SNP	A	A	C			TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c9253ecc-cfac-4cc5-8dab-1e502d34d103	5554cf4e-b4a0-4938-b5d4-852a5bca8de7	16	69922069	69922069	A	C	SNP	WWP2	ENST00000356003	human	ensembl	69_37n	+1	known	silent	c.831	p.T277	0.016	NULL	pfam_HECT,pfam_WW_Rsp5_WWP,superfamily_HECT,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_WW_Rsp5_WWP,smart_C2_Ca-dep,smart_WW_Rsp5_WWP,smart_HECT,pfscan_HECT,pfscan_WW_Rsp5_WWP	-	no_errors	WWP2	HGNC	ENSG00000198373	44	0	0.00	51	11	17.46	-	-	-
ZNF473	0	genome.wustl.edu	37	19	50548416	50548416	+	Missense_Mutation	SNP	A	A	T			TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c9253ecc-cfac-4cc5-8dab-1e502d34d103	5554cf4e-b4a0-4938-b5d4-852a5bca8de7	19	50548416	50548416	A	T	SNP	ZNF473	ENST00000270617	human	ensembl	69_37n	+1	known	missense	c.716	p.H239L	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF473	HGNC	ENSG00000142528	72	0	0.00	58	19	24.36	-	-	-
