Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
ACPP	0	genome.wustl.edu	37	3	132047117	132047117	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A24X-01A-11D-A167-09	TCGA-AR-A24X-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	53d55f5a-df86-44d7-a3a2-2dccc2557b7b	68357e67-adff-4cd3-a458-c6ed719032d2	3	132047117	132047117	C	T	SNP	ACPP	ENST00000351273	human	ensembl	69_37n	+1	known	missense	c.127	p.R43W	1.000	pfam_His_Pase_superF_clade-2	pfam_His_Pase_superF_clade-2	-	no_errors	ACPP	HGNC	ENSG00000014257	20	0	0.00	17	7	29.17	-	-	-
ALG13	0	genome.wustl.edu	37	X	110951473	110951473	+	Missense_Mutation	SNP	T	T	C			TCGA-AR-A24X-01A-11D-A167-09	TCGA-AR-A24X-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	53d55f5a-df86-44d7-a3a2-2dccc2557b7b	68357e67-adff-4cd3-a458-c6ed719032d2	X	110951473	110951473	T	C	SNP	ALG13	ENST00000251943	human	ensembl	69_37n	+1	known	missense	c.290	p.L97P	0.000	NULL	pfam_OTU,pfscan_OTU,pfscan_Tudor	-	no_errors	ALG13	HGNC	ENSG00000101901	74	0	0.00	46	29	38.67	-	-	-
AMY2A	0	genome.wustl.edu	37	1	104166496	104166496	+	Silent	SNP	T	T	C			TCGA-AR-A24X-01A-11D-A167-09	TCGA-AR-A24X-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	53d55f5a-df86-44d7-a3a2-2dccc2557b7b	68357e67-adff-4cd3-a458-c6ed719032d2	1	104166496	104166496	T	C	SNP	AMY2A	ENST00000414303	human	ensembl	69_37n	+1	known	silent	c.1110	p.N370	1.000	superfamily_Glycoside_hydrolase_SF,smart_Glyco_hydro_13_sub_cat_dom	pfam_Glyco_hydro_13_cat_dom,pfam_A-amylase_b_C,superfamily_Glycoside_hydrolase_SF,smart_Glyco_hydro_13_sub_cat_dom,smart_A-amylase_b_C,prints_Alpha_amylase	-	no_errors	AMY2A	HGNC	ENSG00000243480	60	0	0.00	45	6	11.76	-	-	-
B4GALT1	0	genome.wustl.edu	37	9	33135286	33135286	+	Silent	SNP	T	T	C			TCGA-AR-A24X-01A-11D-A167-09	TCGA-AR-A24X-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	53d55f5a-df86-44d7-a3a2-2dccc2557b7b	68357e67-adff-4cd3-a458-c6ed719032d2	9	33135286	33135286	T	C	SNP	B4GALT1	ENST00000379731	human	ensembl	69_37n	-1	known	silent	c.549	p.P183	0.990	pfam_Galactosyl_T_2_met	pfam_Galactosyl_T_2_met,prints_Galactosyl_T_2_met	-	no_errors	B4GALT1	HGNC	ENSG00000086062	55	0	0.00	34	12	26.09	-	-	-
CARD6	0	genome.wustl.edu	37	5	40841761	40841761	+	Silent	SNP	A	A	C			TCGA-AR-A24X-01A-11D-A167-09	TCGA-AR-A24X-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	53d55f5a-df86-44d7-a3a2-2dccc2557b7b	68357e67-adff-4cd3-a458-c6ed719032d2	5	40841761	40841761	A	C	SNP	CARD6	ENST00000254691	human	ensembl	69_37n	+1	known	silent	c.277	p.R93	0.003	superfamily_DEATH-like	pfam_CARD,superfamily_DEATH-like,smart_CARD,pfscan_CARD	-	no_errors	CARD6	HGNC	ENSG00000132357	63	0	0.00	48	23	32.39	-	-	-
CCDC114	0	genome.wustl.edu	37	19	48821779	48821779	+	Silent	SNP	G	G	A			TCGA-AR-A24X-01A-11D-A167-09	TCGA-AR-A24X-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	53d55f5a-df86-44d7-a3a2-2dccc2557b7b	68357e67-adff-4cd3-a458-c6ed719032d2	19	48821779	48821779	G	A	SNP	CCDC114	ENST00000315396	human	ensembl	69_37n	-1	known	silent	c.114	p.S38	0.000	NULL	NULL	-	no_errors	CCDC114	HGNC	ENSG00000105479	20	0	0.00	17	13	43.33	-	-	-
CDH1	0	genome.wustl.edu	37	16	68862076	68862076	+	Splice_Site	SNP	G	G	T			TCGA-AR-A24X-01A-11D-A167-09	TCGA-AR-A24X-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	53d55f5a-df86-44d7-a3a2-2dccc2557b7b	68357e67-adff-4cd3-a458-c6ed719032d2	16	68862076	68862076	G	T	SNP	CDH1	ENST00000261769	human	ensembl	69_37n	+1	known	splice_site	c.2165-1	e14-1	1.000	-	-	-	no_errors	CDH1	HGNC	ENSG00000039068	74	0	0.00	27	23	46.00	-	-	-
CRK	0	genome.wustl.edu	37	17	1340206	1340206	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A24X-01A-11D-A167-09	TCGA-AR-A24X-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	53d55f5a-df86-44d7-a3a2-2dccc2557b7b	68357e67-adff-4cd3-a458-c6ed719032d2	17	1340206	1340206	C	T	SNP	CRK	ENST00000300574	human	ensembl	69_37n	-1	known	missense	c.485	p.R162Q	1.000	pfam_SH3_2,pfam_SH3_domain,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,prints_SH3_domain	pfam_SH3_2,pfam_SH2,pfam_SH3_domain,superfamily_SH3_domain,smart_SH2,smart_SH3_domain,pfscan_SH2,pfscan_SH3_domain,prints_SH2,prints_SH3_domain	-	no_errors	CRK	HGNC	ENSG00000167193	52	0	0.00	22	20	47.62	-	-	-
CROCCP2	0	genome.wustl.edu	37	1	16950687	16950687	+	RNA	SNP	G	G	T			TCGA-AR-A24X-01A-11D-A167-09	TCGA-AR-A24X-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	53d55f5a-df86-44d7-a3a2-2dccc2557b7b	68357e67-adff-4cd3-a458-c6ed719032d2	1	16950687	16950687	G	T	SNP	CROCCP2	ENST00000421700	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	CROCCP2	HGNC	ENSG00000215908	9	0	0.00	17	5	22.73	-	-	-
ELF4	0	genome.wustl.edu	37	X	129201171	129201171	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A24X-01A-11D-A167-09	TCGA-AR-A24X-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	53d55f5a-df86-44d7-a3a2-2dccc2557b7b	68357e67-adff-4cd3-a458-c6ed719032d2	X	129201171	129201171	C	T	SNP	ELF4	ENST00000308167	human	ensembl	69_37n	-1	known	missense	c.1517	p.G506E	0.152	NULL	pfam_TF_Elf_N,pfam_Ets,smart_Ets,pfscan_Ets,prints_Ets	-	no_errors	ELF4	HGNC	ENSG00000102034	22	0	0.00	12	10	45.45	-	-	-
EP400	0	genome.wustl.edu	37	12	132466866	132466866	+	Missense_Mutation	SNP	A	A	G			TCGA-AR-A24X-01A-11D-A167-09	TCGA-AR-A24X-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	53d55f5a-df86-44d7-a3a2-2dccc2557b7b	68357e67-adff-4cd3-a458-c6ed719032d2	12	132466866	132466866	A	G	SNP	EP400	ENST00000333577	human	ensembl	69_37n	+1	known	missense	c.1880	p.Q627R	0.996	NULL	pfam_SNF2_N,pfam_HSA,pfam_Helicase_C,superfamily_Homeodomain-like,smart_HAS_subgr,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Myb-like_dom,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	EP400	HGNC	ENSG00000183495	33	0	0.00	15	8	33.33	-	-	-
FAM188B	0	genome.wustl.edu	37	7	30825399	30825399	+	Missense_Mutation	SNP	T	T	A			TCGA-AR-A24X-01A-11D-A167-09	TCGA-AR-A24X-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	53d55f5a-df86-44d7-a3a2-2dccc2557b7b	68357e67-adff-4cd3-a458-c6ed719032d2	7	30825399	30825399	T	A	SNP	FAM188B	ENST00000265299	human	ensembl	69_37n	+1	known	missense	c.454	p.F152I	0.442	NULL	NULL	-	no_errors	FAM188B	HGNC	ENSG00000106125	54	0	0.00	39	22	36.07	-	-	-
GATA3	0	genome.wustl.edu	37	10	8111433	8111434	+	Splice_Site	DEL	CA	CA	-			TCGA-AR-A24X-01A-11D-A167-09	TCGA-AR-A24X-10A-01D-A167-09	CA	CA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	53d55f5a-df86-44d7-a3a2-2dccc2557b7b	68357e67-adff-4cd3-a458-c6ed719032d2	10	8111433	8111434	CA	-	DEL	GATA3	ENST00000379328	human	ensembl	69_37n	+1	known	splice_site_del	c.925-3_925-2	e4-2	1.000:1.000	-	-	-	no_errors	GATA3	HGNC	ENSG00000107485	38	0	0	26	5	16.13	-	-	-
GPR116	0	genome.wustl.edu	37	6	46826226	46826226	+	Silent	SNP	G	G	A			TCGA-AR-A24X-01A-11D-A167-09	TCGA-AR-A24X-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	53d55f5a-df86-44d7-a3a2-2dccc2557b7b	68357e67-adff-4cd3-a458-c6ed719032d2	6	46826226	46826226	G	A	SNP	GPR116	ENST00000265417	human	ensembl	69_37n	-1	known	silent	c.3414	p.C1138	1.000	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like	pfam_GPCR_2_secretin-like,pfam_SEA,pfam_GPS_dom,pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,pfscan_Ig-like,prints_GPCR_2_Ig-hepta_rcpt,prints_GPCR_2_secretin-like	-	no_errors	GPR116	HGNC	ENSG00000069122	24	0	0.00	14	7	33.33	-	-	-
HMGCS1	0	genome.wustl.edu	37	5	43294939	43294939	+	Nonsense_Mutation	SNP	G	G	T			TCGA-AR-A24X-01A-11D-A167-09	TCGA-AR-A24X-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	53d55f5a-df86-44d7-a3a2-2dccc2557b7b	68357e67-adff-4cd3-a458-c6ed719032d2	5	43294939	43294939	G	T	SNP	HMGCS1	ENST00000325110	human	ensembl	69_37n	-1	known	nonsense	c.930	p.Y310*	1.000	pfam_HMG_CoA_synt_C,superfamily_Thiolase-like,tigrfam_HMG_CoA_synthase_euk	pfam_HMG_CoA_synt_C,pfam_HMG_CoA_synth_N,superfamily_Thiolase-like,tigrfam_HMG_CoA_synthase_euk	-	no_errors	HMGCS1	HGNC	ENSG00000112972	75	0	0.00	58	9	13.43	-	-	-
HSCB	0	genome.wustl.edu	37	22	29141935	29141935	+	Missense_Mutation	SNP	T	T	A			TCGA-AR-A24X-01A-11D-A167-09	TCGA-AR-A24X-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	53d55f5a-df86-44d7-a3a2-2dccc2557b7b	68357e67-adff-4cd3-a458-c6ed719032d2	22	29141935	29141935	T	A	SNP	HSCB	ENST00000216027	human	ensembl	69_37n	+1	known	missense	c.507	p.N169K	1.000	pfam_Heat_shock_cognate_B_oligo_C,superfamily_Heat_shock_cognate_B_oligo_C,tigrfam_HscB	pfam_Heat_shock_cognate_B_oligo_C,pfam_DnaJ_N,superfamily_DnaJ_N,superfamily_Heat_shock_cognate_B_oligo_C,tigrfam_HscB	-	no_errors	HSCB	HGNC	ENSG00000100209	44	0	0.00	13	15	53.57	-	-	-
IQSEC2	0	genome.wustl.edu	37	X	53264131	53264133	+	In_Frame_Del	DEL	TGG	TGG	-			TCGA-AR-A24X-01A-11D-A167-09	TCGA-AR-A24X-10A-01D-A167-09	TGG	TGG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	53d55f5a-df86-44d7-a3a2-2dccc2557b7b	68357e67-adff-4cd3-a458-c6ed719032d2	X	53264131	53264133	TGG	-	DEL	IQSEC2	ENST00000396435	human	ensembl	69_37n	-1	known	in_frame_del	c.3737_3735	p.H1247in_frame_del	0.997:0.991:0.967	NULL	pfam_Sec7,superfamily_Sec7,smart_Sec7,smart_Pleckstrin_homology,pfscan_IQ_motif_EF-hand-BS,pfscan_Sec7	-	no_errors	IQSEC2	HGNC	ENSG00000124313	36	0	0.00	34	6	15.00	-	-	-
KIAA0754	0	genome.wustl.edu	37	1	39878515	39878515	+	Missense_Mutation	SNP	A	A	G			TCGA-AR-A24X-01A-11D-A167-09	TCGA-AR-A24X-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	53d55f5a-df86-44d7-a3a2-2dccc2557b7b	68357e67-adff-4cd3-a458-c6ed719032d2	1	39878515	39878515	A	G	SNP	KIAA0754	ENST00000530275	human	ensembl	69_37n	+1	known	missense	c.2170	p.I724V	0.000	NULL	NULL	-	no_errors	KIAA0754	HGNC	ENSG00000255103	34	0	0.00	25	13	34.21	-	-	-
KIAA1210	0	genome.wustl.edu	37	X	118222466	118222466	+	Silent	SNP	C	C	A			TCGA-AR-A24X-01A-11D-A167-09	TCGA-AR-A24X-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	53d55f5a-df86-44d7-a3a2-2dccc2557b7b	68357e67-adff-4cd3-a458-c6ed719032d2	X	118222466	118222466	C	A	SNP	KIAA1210	ENST00000402510	human	ensembl	69_37n	-1	known	silent	c.2727	p.L909	0.000	NULL	NULL	-	no_errors	KIAA1210	HGNC	ENSG00000250423	43	0	0.00	26	17	39.53	-	-	-
LRRC4B	0	genome.wustl.edu	37	19	51021711	51021711	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A24X-01A-11D-A167-09	TCGA-AR-A24X-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	53d55f5a-df86-44d7-a3a2-2dccc2557b7b	68357e67-adff-4cd3-a458-c6ed719032d2	19	51021711	51021711	G	A	SNP	LRRC4B	ENST00000389201	human	ensembl	69_37n	-1	known	missense	c.1259	p.T420M	1.000	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Leu-rich_rpt,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	LRRC4B	HGNC	ENSG00000131409	19	0	0.00	11	10	47.62	-	-	-
MEGF8	0	genome.wustl.edu	37	19	42875614	42875614	+	Nonsense_Mutation	SNP	C	C	T			TCGA-AR-A24X-01A-11D-A167-09	TCGA-AR-A24X-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	53d55f5a-df86-44d7-a3a2-2dccc2557b7b	68357e67-adff-4cd3-a458-c6ed719032d2	19	42875614	42875614	C	T	SNP	MEGF8	ENST00000251268	human	ensembl	69_37n	+1	known	nonsense	c.7249	p.R2417*	1.000	smart_EGF-like	pfam_CUB,pfam_EGF_laminin,pfam_Plexin_repeat,superfamily_Gal_Oxase/kelch_b-propeller,superfamily_CUB,superfamily_Plexin-like_fold,smart_CUB,smart_EGF-like,smart_Plexin-like,smart_EGF-like_Ca-bd,smart_EGF_laminin,pfscan_CUB,pfscan_EG-like_dom,pfscan_EGF_laminin	-	no_errors	MEGF8	HGNC	ENSG00000105429	24	0	0.00	14	9	39.13	-	-	-
MUC5B	0	genome.wustl.edu	37	11	1251759	1251759	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A24X-01A-11D-A167-09	TCGA-AR-A24X-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	53d55f5a-df86-44d7-a3a2-2dccc2557b7b	68357e67-adff-4cd3-a458-c6ed719032d2	11	1251759	1251759	C	T	SNP	MUC5B	ENST00000447027	human	ensembl	69_37n	+1	known	missense	c.1408	p.R470W	0.980	pfam_VWF_type-D,smart_VWF_type-D	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC5B	HGNC	ENSG00000117983	12	0	0.00	13	6	31.58	-	-	-
POLR2J	0	genome.wustl.edu	37	7	102116678	102116678	+	Silent	SNP	A	A	G			TCGA-AR-A24X-01A-11D-A167-09	TCGA-AR-A24X-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	53d55f5a-df86-44d7-a3a2-2dccc2557b7b	68357e67-adff-4cd3-a458-c6ed719032d2	7	102116678	102116678	A	G	SNP	POLR2J	ENST00000393794	human	ensembl	69_37n	-1	known	silent	c.93	p.C31	0.723	superfamily_DNA-dir_RNA_pol_RBP11-like	pfam_DNA-dir_RNA_pol_dimersation,superfamily_DNA-dir_RNA_pol_RBP11-like	-	no_errors	POLR2J	HGNC	ENSG00000005075	51	0	0.00	34	4	10.53	-	-	-
PRMT7	0	genome.wustl.edu	37	16	68379634	68379634	+	Silent	SNP	G	G	T			TCGA-AR-A24X-01A-11D-A167-09	TCGA-AR-A24X-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	53d55f5a-df86-44d7-a3a2-2dccc2557b7b	68357e67-adff-4cd3-a458-c6ed719032d2	16	68379634	68379634	G	T	SNP	PRMT7	ENST00000339507	human	ensembl	69_37n	+1	known	silent	c.984	p.V328	0.000	pirsf_Arg_MeTrfase_PRMT7	pfam_Ribosomal-L11_MeTrfase_PrmA,pirsf_Arg_MeTrfase_PRMT7	-	no_errors	PRMT7	HGNC	ENSG00000132600	21	0	0.00	7	7	50.00	-	-	-
RBM19	0	genome.wustl.edu	37	12	114395756	114395756	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A24X-01A-11D-A167-09	TCGA-AR-A24X-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	53d55f5a-df86-44d7-a3a2-2dccc2557b7b	68357e67-adff-4cd3-a458-c6ed719032d2	12	114395756	114395756	G	A	SNP	RBM19	ENST00000261741	human	ensembl	69_37n	-1	known	missense	c.671	p.S224L	0.000	NULL	pfam_RRM_dom,smart_RRM_dom,smart_RRM_dom_euk,pfscan_RRM_dom	-	no_errors	RBM19	HGNC	ENSG00000122965	41	0	0.00	33	14	29.79	-	-	-
RPGR	0	genome.wustl.edu	37	X	38146402	38146402	+	Missense_Mutation	SNP	C	C	A			TCGA-AR-A24X-01A-11D-A167-09	TCGA-AR-A24X-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	53d55f5a-df86-44d7-a3a2-2dccc2557b7b	68357e67-adff-4cd3-a458-c6ed719032d2	X	38146402	38146402	C	A	SNP	RPGR	ENST00000378505	human	ensembl	69_37n	-1	known	missense	c.1850	p.G617V	0.002	NULL	pfam_Reg_chr_condens,superfamily_Reg_csome_cond/b-lactamase_inh,pfscan_Reg_chr_condens,prints_Reg_chr_condens	-	no_errors	RPGR	HGNC	ENSG00000156313	64	0	0.00	50	8	13.79	-	-	-
RRP7B	0	genome.wustl.edu	37	22	42972614	42972614	+	RNA	SNP	T	T	C			TCGA-AR-A24X-01A-11D-A167-09	TCGA-AR-A24X-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	53d55f5a-df86-44d7-a3a2-2dccc2557b7b	68357e67-adff-4cd3-a458-c6ed719032d2	22	42972614	42972614	T	C	SNP	RRP7B	ENST00000357802	human	ensembl	69_37n	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RRP7B	HGNC	ENSG00000182841	16	0	0.00	7	7	50.00	-	-	-
SAMD4A	0	genome.wustl.edu	37	14	55251070	55251070	+	Missense_Mutation	SNP	A	A	G			TCGA-AR-A24X-01A-11D-A167-09	TCGA-AR-A24X-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	53d55f5a-df86-44d7-a3a2-2dccc2557b7b	68357e67-adff-4cd3-a458-c6ed719032d2	14	55251070	55251070	A	G	SNP	SAMD4A	ENST00000555192	human	ensembl	69_37n	+1	novel	missense	c.830	p.H277R	0.000	NULL	NULL	-	no_errors	SAMD4A	HGNC	ENSG00000020577	49	0	0.00	46	22	32.35	-	-	-
SDHAP1	0	genome.wustl.edu	37	3	195701310	195701311	+	Splice_Site	INS	-	-	AA			TCGA-AR-A24X-01A-11D-A167-09	TCGA-AR-A24X-10A-01D-A167-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	53d55f5a-df86-44d7-a3a2-2dccc2557b7b	68357e67-adff-4cd3-a458-c6ed719032d2	3	195701310	195701311	-	AA	INS	SDHAP1	ENST00000354937	human	ensembl	69_37n	-1	known	splice_site_ins	c.NULL	NULL	1.000:0.999	-	-	-	no_coding_region:pseudogene	SDHAP1	HGNC	ENSG00000185485	47	0	0.00	36	5	12.20	-	-	-
TMEM132C	0	genome.wustl.edu	37	12	129180412	129180412	+	Silent	SNP	C	C	A			TCGA-AR-A24X-01A-11D-A167-09	TCGA-AR-A24X-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	53d55f5a-df86-44d7-a3a2-2dccc2557b7b	68357e67-adff-4cd3-a458-c6ed719032d2	12	129180412	129180412	C	A	SNP	TMEM132C	ENST00000435159	human	ensembl	69_37n	+1	known	silent	c.1693	p.R565	0.828	NULL	NULL	-	no_errors	TMEM132C	HGNC	ENSG00000181234	17	0	0.00	12	5	29.41	-	-	-
TRBV5-1	0	genome.wustl.edu	37	7	142021145	142021145	+	Missense_Mutation	SNP	G	G	T			TCGA-AR-A24X-01A-11D-A167-09	TCGA-AR-A24X-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	53d55f5a-df86-44d7-a3a2-2dccc2557b7b	68357e67-adff-4cd3-a458-c6ed719032d2	7	142021145	142021145	G	T	SNP	TRBV5-1	ENST00000390381	human	ensembl	69_37n	+1	known	missense	c.125	p.C42F	0.003	pfam_Ig_V-set,smart_Ig_V-set_subgr,pfscan_Ig-like	pfam_Ig_V-set,smart_Ig_V-set_subgr,pfscan_Ig-like	-	no_stop_codon:bad_bp_length_for_coding_region	TRBV5-1	HGNC	ENSG00000211734	49	0	0.00	34	15	30.61	-	-	-
