Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
ALX4	0	genome.wustl.edu	37	11	44296903	44296903	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A5QM-01A-11D-A27P-09	TCGA-AR-A5QM-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	be9c46db-f3c8-46d6-bb9e-b885a4c33e7e	bf63d4f2-a6df-4146-9ef6-5892fc21db95	11	44296903	44296903	C	T	SNP	ALX4	ENST00000329255	human	ensembl	69_37n	-1	known	missense	c.772	p.V258M	1.000	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	pfam_Homeodomain,pfam_OAR_dom,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_OAR_dom,pfscan_Homeodomain	-	no_errors	ALX4	HGNC	ENSG00000052850	26	0	0.00	22	5	18.52	-	-	-
ANKRD12	0	genome.wustl.edu	37	18	9221991	9221992	+	Frame_Shift_Ins	INS	-	-	A			TCGA-AR-A5QM-01A-11D-A27P-09	TCGA-AR-A5QM-10A-01D-A27P-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	be9c46db-f3c8-46d6-bb9e-b885a4c33e7e	bf63d4f2-a6df-4146-9ef6-5892fc21db95	18	9221991	9221992	-	A	INS	ANKRD12	ENST00000262126	human	ensembl	69_37n	+1	known	frame_shift_ins	c.937_938	p.Y313fs	1.000:0.999	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD12	HGNC	ENSG00000101745	42	0	0.00	25	10	28.57	-	-	-
ARPP21	0	genome.wustl.edu	37	3	35731564	35731564	+	Missense_Mutation	SNP	A	A	C			TCGA-AR-A5QM-01A-11D-A27P-09	TCGA-AR-A5QM-10A-01D-A27P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	be9c46db-f3c8-46d6-bb9e-b885a4c33e7e	bf63d4f2-a6df-4146-9ef6-5892fc21db95	3	35731564	35731564	A	C	SNP	ARPP21	ENST00000425289	human	ensembl	69_37n	+1	putative	missense	c.1	p.I1L	0.214	NULL	pfam_R3H_ss-bd,smart_R3H_ss-bd,pfscan_R3H_ss-bd	-	no_start_codon:pseudogene:bad_bp_length_for_coding_region	ARPP21	HGNC	ENSG00000172995	30	0	0.00	41	6	12.77	-	-	-
BRWD1	0	genome.wustl.edu	37	21	40568403	40568403	+	Missense_Mutation	SNP	T	T	C			TCGA-AR-A5QM-01A-11D-A27P-09	TCGA-AR-A5QM-10A-01D-A27P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	be9c46db-f3c8-46d6-bb9e-b885a4c33e7e	bf63d4f2-a6df-4146-9ef6-5892fc21db95	21	40568403	40568403	T	C	SNP	BRWD1	ENST00000342449	human	ensembl	69_37n	-1	known	missense	c.6592	p.I2198V	0.000	NULL	pfam_WD40_repeat,pfam_Bromodomain,superfamily_WD40_repeat_dom,superfamily_Bromodomain,smart_WD40_repeat,smart_Bromodomain,pfscan_Bromodomain,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Bromodomain	-	no_errors	BRWD1	HGNC	ENSG00000185658	46	0	0.00	68	9	11.69	-	-	-
C16orf11	0	genome.wustl.edu	37	16	613320	613320	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A5QM-01A-11D-A27P-09	TCGA-AR-A5QM-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	be9c46db-f3c8-46d6-bb9e-b885a4c33e7e	bf63d4f2-a6df-4146-9ef6-5892fc21db95	16	613320	613320	G	A	SNP	C16orf11	ENST00000409413	human	ensembl	69_37n	+1	known	missense	c.26	p.R9H	0.635	NULL	NULL	-	no_errors	C16orf11	HGNC	ENSG00000161992	46	0	0.00	91	12	11.65	-	-	-
CDH1	0	genome.wustl.edu	37	16	68835629	68835629	+	Nonsense_Mutation	SNP	C	C	T			TCGA-AR-A5QM-01A-11D-A27P-09	TCGA-AR-A5QM-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	be9c46db-f3c8-46d6-bb9e-b885a4c33e7e	bf63d4f2-a6df-4146-9ef6-5892fc21db95	16	68835629	68835629	C	T	SNP	CDH1	ENST00000261769	human	ensembl	69_37n	+1	known	nonsense	c.220	p.R74*	0.998	pfam_Cadherin_pro_dom,superfamily_Cadherin-like	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH1	HGNC	ENSG00000039068	44	0	0.00	24	15	38.46	-	-	-
DPF3	0	genome.wustl.edu	37	14	73137344	73137345	+	RNA	DEL	TC	TC	-			TCGA-AR-A5QM-01A-11D-A27P-09	TCGA-AR-A5QM-10A-01D-A27P-09	TC	TC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	be9c46db-f3c8-46d6-bb9e-b885a4c33e7e	bf63d4f2-a6df-4146-9ef6-5892fc21db95	14	73137344	73137345	TC	-	DEL	DPF3	ENST00000557704	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.959:0.966	-	-	-	no_errors	DPF3	HGNC	ENSG00000205683	32	0	0.00	47	8	14.55	-	-	-
ERN2	0	genome.wustl.edu	37	16	23706081	23706081	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A5QM-01A-11D-A27P-09	TCGA-AR-A5QM-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	be9c46db-f3c8-46d6-bb9e-b885a4c33e7e	bf63d4f2-a6df-4146-9ef6-5892fc21db95	16	23706081	23706081	C	T	SNP	ERN2	ENST00000256797	human	ensembl	69_37n	-1	known	missense	c.2212	p.E738K	0.999	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_KEN_RNase_activator,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Quinonprotein_ADH-like,smart_PQQ_beta_propeller_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_PUG-dom,pfscan_Prot_kinase_cat_dom	-	no_errors	ERN2	HGNC	ENSG00000134398	52	0	0.00	75	19	20.21	-	-	-
FAM182B	0	genome.wustl.edu	37	20	25848605	25848605	+	RNA	SNP	C	C	T			TCGA-AR-A5QM-01A-11D-A27P-09	TCGA-AR-A5QM-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	be9c46db-f3c8-46d6-bb9e-b885a4c33e7e	bf63d4f2-a6df-4146-9ef6-5892fc21db95	20	25848605	25848605	C	T	SNP	FAM182B	ENST00000478164	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.028	-	-	-	no_errors	FAM182B	HGNC	ENSG00000175170	26	0	0.00	24	8	25.00	-	-	-
FAM84A	0	genome.wustl.edu	37	2	14775297	14775297	+	RNA	SNP	G	G	A			TCGA-AR-A5QM-01A-11D-A27P-09	TCGA-AR-A5QM-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	be9c46db-f3c8-46d6-bb9e-b885a4c33e7e	bf63d4f2-a6df-4146-9ef6-5892fc21db95	2	14775297	14775297	G	A	SNP	FAM84A	ENST00000497769	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	FAM84A	HGNC	ENSG00000162981	35	0	0.00	30	16	34.78	-	-	-
FBXO43	0	genome.wustl.edu	37	8	101146139	101146139	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A5QM-01A-11D-A27P-09	TCGA-AR-A5QM-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	be9c46db-f3c8-46d6-bb9e-b885a4c33e7e	bf63d4f2-a6df-4146-9ef6-5892fc21db95	8	101146139	101146139	C	T	SNP	FBXO43	ENST00000428847	human	ensembl	69_37n	-1	known	missense	c.2018	p.C673Y	1.000	pfam_Znf_C6HC,smart_Znf_C6HC	pfam_Znf_C6HC,superfamily_F-box_dom_cyclin-like,smart_Znf_C6HC	-	no_errors	FBXO43	HGNC	ENSG00000156509	20	0	0.00	18	16	47.06	-	-	-
KIAA0556	0	genome.wustl.edu	37	16	27709761	27709761	+	Silent	SNP	C	C	T			TCGA-AR-A5QM-01A-11D-A27P-09	TCGA-AR-A5QM-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	be9c46db-f3c8-46d6-bb9e-b885a4c33e7e	bf63d4f2-a6df-4146-9ef6-5892fc21db95	16	27709761	27709761	C	T	SNP	KIAA0556	ENST00000261588	human	ensembl	69_37n	+1	known	silent	c.1053	p.N351	0.111	NULL	superfamily_Thaumatin	-	no_errors	KIAA0556	HGNC	ENSG00000047578	18	0	0.00	23	13	36.11	-	-	-
MAGEC3	0	genome.wustl.edu	37	X	140985322	140985322	+	Missense_Mutation	SNP	T	T	A			TCGA-AR-A5QM-01A-11D-A27P-09	TCGA-AR-A5QM-10A-01D-A27P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	be9c46db-f3c8-46d6-bb9e-b885a4c33e7e	bf63d4f2-a6df-4146-9ef6-5892fc21db95	X	140985322	140985322	T	A	SNP	MAGEC3	ENST00000536088	human	ensembl	69_37n	+1	known	missense	c.884	p.L295H	0.003	pfam_MAGE,pfscan_MAGE	pfam_MAGE,pfscan_MAGE	-	no_errors	MAGEC3	HGNC	ENSG00000165509	57	0	0.00	55	11	16.67	-	-	-
MGAM	0	genome.wustl.edu	37	7	141767141	141767141	+	Silent	SNP	G	G	A			TCGA-AR-A5QM-01A-11D-A27P-09	TCGA-AR-A5QM-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	be9c46db-f3c8-46d6-bb9e-b885a4c33e7e	bf63d4f2-a6df-4146-9ef6-5892fc21db95	7	141767141	141767141	G	A	SNP	MGAM	ENST00000475668	human	ensembl	69_37n	+1	putative	silent	c.4920	p.E1640	1.000	pfam_Glyco_hydro_31	pfam_Glyco_hydro_31,pfam_P_trefoil,superfamily_Glycoside_hydrolase_SF,superfamily_Glyco_hydro-type_carb-bd,smart_P_trefoil	-	no_errors	MGAM	HGNC	ENSG00000257335	89	0	0.00	133	21	13.55	-	-	-
MRGPRX1	0	genome.wustl.edu	37	11	18955397	18955397	+	Missense_Mutation	SNP	A	A	T			TCGA-AR-A5QM-01A-11D-A27P-09	TCGA-AR-A5QM-10A-01D-A27P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	be9c46db-f3c8-46d6-bb9e-b885a4c33e7e	bf63d4f2-a6df-4146-9ef6-5892fc21db95	11	18955397	18955397	A	T	SNP	MRGPRX1	ENST00000302797	human	ensembl	69_37n	-1	known	missense	c.935	p.I312N	0.285	NULL	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	-	no_errors	MRGPRX1	HGNC	ENSG00000170255	47	0	0.00	38	10	20.83	-	-	-
OGDH	0	genome.wustl.edu	37	7	44736635	44736635	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A5QM-01A-11D-A27P-09	TCGA-AR-A5QM-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	be9c46db-f3c8-46d6-bb9e-b885a4c33e7e	bf63d4f2-a6df-4146-9ef6-5892fc21db95	7	44736635	44736635	G	A	SNP	OGDH	ENST00000222673	human	ensembl	69_37n	+1	known	missense	c.2023	p.G675S	1.000	pfam_Transketolase-like_Pyr-bd,smart_Transketolase-like_Pyr-bd,pirsf_2oxoglutarate_DH_E1,tigrfam_2oxoglutarate_DH_E1	pfam_DH_E1,pfam_Transketolase-like_Pyr-bd,smart_Transketolase-like_Pyr-bd,pirsf_2oxoglutarate_DH_E1,tigrfam_2oxoglutarate_DH_E1	-	no_errors	OGDH	HGNC	ENSG00000105953	59	0	0.00	60	27	31.03	-	-	-
PER3	0	genome.wustl.edu	37	1	7890053	7890053	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A5QM-01A-11D-A27P-09	TCGA-AR-A5QM-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	be9c46db-f3c8-46d6-bb9e-b885a4c33e7e	bf63d4f2-a6df-4146-9ef6-5892fc21db95	1	7890053	7890053	G	A	SNP	PER3	ENST00000361923	human	ensembl	69_37n	+1	known	missense	c.3019	p.A1007T	0.080	pfam_Period_circadian-like_C	pfam_Period_circadian-like_C,pfam_PAS_fold_3,pfam_PAS_fold,smart_PAS,pfscan_PAS	-	no_errors	PER3	HGNC	ENSG00000049246	41	0	0.00	35	6	14.63	-	-	-
PER3	0	genome.wustl.edu	37	1	7890055	7890055	+	Silent	SNP	T	T	A			TCGA-AR-A5QM-01A-11D-A27P-09	TCGA-AR-A5QM-10A-01D-A27P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	be9c46db-f3c8-46d6-bb9e-b885a4c33e7e	bf63d4f2-a6df-4146-9ef6-5892fc21db95	1	7890055	7890055	T	A	SNP	PER3	ENST00000361923	human	ensembl	69_37n	+1	known	silent	c.3021	p.A1007	0.063	pfam_Period_circadian-like_C	pfam_Period_circadian-like_C,pfam_PAS_fold_3,pfam_PAS_fold,smart_PAS,pfscan_PAS	-	no_errors	PER3	HGNC	ENSG00000049246	43	0	0.00	35	4	10.26	-	-	-
PIK3CA	0	genome.wustl.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G			TCGA-AR-A5QM-01A-11D-A27P-09	TCGA-AR-A5QM-10A-01D-A27P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	be9c46db-f3c8-46d6-bb9e-b885a4c33e7e	bf63d4f2-a6df-4146-9ef6-5892fc21db95	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	+1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	17	0	0.00	12	4	25.00	-	-	-
PTPRE	0	genome.wustl.edu	37	10	129883933	129883933	+	RNA	SNP	C	C	T			TCGA-AR-A5QM-01A-11D-A27P-09	TCGA-AR-A5QM-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	be9c46db-f3c8-46d6-bb9e-b885a4c33e7e	bf63d4f2-a6df-4146-9ef6-5892fc21db95	10	129883933	129883933	C	T	SNP	PTPRE	ENST00000479896	human	ensembl	69_37n	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	PTPRE	HGNC	ENSG00000132334	58	0	0.00	48	6	11.11	-	-	-
RASGRP4	0	genome.wustl.edu	37	19	38903584	38903584	+	Missense_Mutation	SNP	G	G	T			TCGA-AR-A5QM-01A-11D-A27P-09	TCGA-AR-A5QM-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	be9c46db-f3c8-46d6-bb9e-b885a4c33e7e	bf63d4f2-a6df-4146-9ef6-5892fc21db95	19	38903584	38903584	G	T	SNP	RASGRP4	ENST00000587738	human	ensembl	69_37n	-1	known	missense	c.1522	p.P508T	0.262	NULL	pfam_RasGRF_CDC25,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_Ras_GEF_dom,smart_RasGRF_CDC25,smart_Prot_Kinase_C-like_PE/DAG-bd,pfscan_EF_HAND_2,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N,prints_DAG/PE-bd	-	no_errors	RASGRP4	HGNC	ENSG00000171777	41	0	0.00	39	9	18.75	-	-	-
RNF32	0	genome.wustl.edu	37	7	156451374	156451374	+	RNA	SNP	G	G	C			TCGA-AR-A5QM-01A-11D-A27P-09	TCGA-AR-A5QM-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	be9c46db-f3c8-46d6-bb9e-b885a4c33e7e	bf63d4f2-a6df-4146-9ef6-5892fc21db95	7	156451374	156451374	G	C	SNP	RNF32	ENST00000463028	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	RNF32	HGNC	ENSG00000105982	10	0	0.00	10	4	28.57	-	-	-
SEMA4B	0	genome.wustl.edu	37	15	90771234	90771234	+	Missense_Mutation	SNP	A	A	C			TCGA-AR-A5QM-01A-11D-A27P-09	TCGA-AR-A5QM-10A-01D-A27P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	be9c46db-f3c8-46d6-bb9e-b885a4c33e7e	bf63d4f2-a6df-4146-9ef6-5892fc21db95	15	90771234	90771234	A	C	SNP	SEMA4B	ENST00000332496	human	ensembl	69_37n	+1	known	missense	c.1873	p.N625H	0.470	NULL	pfam_Semaphorin/CD100_Ag,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,pfscan_Semaphorin/CD100_Ag	-	no_errors	SEMA4B	HGNC	ENSG00000185033	80	0	0.00	59	10	14.49	-	-	-
SLC4A1	0	genome.wustl.edu	37	17	42328557	42328557	+	Silent	SNP	C	C	T			TCGA-AR-A5QM-01A-11D-A27P-09	TCGA-AR-A5QM-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	be9c46db-f3c8-46d6-bb9e-b885a4c33e7e	bf63d4f2-a6df-4146-9ef6-5892fc21db95	17	42328557	42328557	C	T	SNP	SLC4A1	ENST00000262418	human	ensembl	69_37n	-1	known	silent	c.2625	p.P875	0.004	tigrfam_HCO3_transpt_euk	pfam_HCO3_transpt_C,pfam_HCO3_transpt_cyt,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,prints_Anion_exchange,prints_Anion_exchange_1,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A1	HGNC	ENSG00000004939	63	0	0.00	65	8	10.96	-	-	-
SLITRK2	0	genome.wustl.edu	37	X	144905276	144905276	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A5QM-01A-11D-A27P-09	TCGA-AR-A5QM-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	be9c46db-f3c8-46d6-bb9e-b885a4c33e7e	bf63d4f2-a6df-4146-9ef6-5892fc21db95	X	144905276	144905276	G	A	SNP	SLITRK2	ENST00000370490	human	ensembl	69_37n	+1	known	missense	c.1333	p.G445R	1.000	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	SLITRK2	HGNC	ENSG00000185985	57	0	0.00	71	9	11.25	-	-	-
SPATA8	0	genome.wustl.edu	37	15	97328267	97328267	+	Nonsense_Mutation	SNP	C	C	T			TCGA-AR-A5QM-01A-11D-A27P-09	TCGA-AR-A5QM-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	be9c46db-f3c8-46d6-bb9e-b885a4c33e7e	bf63d4f2-a6df-4146-9ef6-5892fc21db95	15	97328267	97328267	C	T	SNP	SPATA8	ENST00000328504	human	ensembl	69_37n	+1	known	nonsense	c.238	p.R80*	0.000	NULL	NULL	-	no_errors	SPATA8	HGNC	ENSG00000185594	57	0	0.00	41	24	36.92	-	-	-
TEX15	0	genome.wustl.edu	37	8	30704914	30704914	+	Missense_Mutation	SNP	G	G	T			TCGA-AR-A5QM-01A-11D-A27P-09	TCGA-AR-A5QM-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	be9c46db-f3c8-46d6-bb9e-b885a4c33e7e	bf63d4f2-a6df-4146-9ef6-5892fc21db95	8	30704914	30704914	G	T	SNP	TEX15	ENST00000256246	human	ensembl	69_37n	-1	known	missense	c.1620	p.N540K	0.017	NULL	NULL	-	no_errors	TEX15	HGNC	ENSG00000133863	15	0	0.00	13	7	35.00	-	-	-
TFAP2D	0	genome.wustl.edu	37	6	50683206	50683206	+	Silent	SNP	C	C	A			TCGA-AR-A5QM-01A-11D-A27P-09	TCGA-AR-A5QM-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	be9c46db-f3c8-46d6-bb9e-b885a4c33e7e	bf63d4f2-a6df-4146-9ef6-5892fc21db95	6	50683206	50683206	C	A	SNP	TFAP2D	ENST00000008391	human	ensembl	69_37n	+1	known	silent	c.417	p.A139	1.000	NULL	pfam_TF_AP2_C,prints_TF_AP2_C	-	no_errors	TFAP2D	HGNC	ENSG00000008197	67	0	0.00	53	9	14.52	-	-	-
THSD7B	0	genome.wustl.edu	37	2	138425431	138425431	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A5QM-01A-11D-A27P-09	TCGA-AR-A5QM-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	be9c46db-f3c8-46d6-bb9e-b885a4c33e7e	bf63d4f2-a6df-4146-9ef6-5892fc21db95	2	138425431	138425431	G	A	SNP	THSD7B	ENST00000272643	human	ensembl	69_37n	+1	known	missense	c.4748	p.C1583Y	1.000	NULL	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	-	no_errors	THSD7B	HGNC	ENSG00000144229	85	0	0.00	67	19	21.84	-	-	-
TMEM132E	0	genome.wustl.edu	37	17	32961833	32961833	+	Missense_Mutation	SNP	C	C	A			TCGA-AR-A5QM-01A-11D-A27P-09	TCGA-AR-A5QM-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	be9c46db-f3c8-46d6-bb9e-b885a4c33e7e	bf63d4f2-a6df-4146-9ef6-5892fc21db95	17	32961833	32961833	C	A	SNP	TMEM132E	ENST00000321639	human	ensembl	69_37n	+1	known	missense	c.1434	p.S478R	1.000	NULL	NULL	-	no_errors	TMEM132E	HGNC	ENSG00000181291	46	0	0.00	44	5	10.20	-	-	-
TMEM185A	0	genome.wustl.edu	37	X	148685667	148685667	+	Missense_Mutation	SNP	G	G	T			TCGA-AR-A5QM-01A-11D-A27P-09	TCGA-AR-A5QM-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	be9c46db-f3c8-46d6-bb9e-b885a4c33e7e	bf63d4f2-a6df-4146-9ef6-5892fc21db95	X	148685667	148685667	G	T	SNP	TMEM185A	ENST00000316916	human	ensembl	69_37n	-1	known	missense	c.493	p.H165N	1.000	pfam_TM_Fragile-X-F-assoc	pfam_TM_Fragile-X-F-assoc	-	no_errors	TMEM185A	HGNC	ENSG00000155984	58	0	0.00	72	13	15.29	-	-	-
TNS4	0	genome.wustl.edu	37	17	38643348	38643348	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A5QM-01A-11D-A27P-09	TCGA-AR-A5QM-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	be9c46db-f3c8-46d6-bb9e-b885a4c33e7e	bf63d4f2-a6df-4146-9ef6-5892fc21db95	17	38643348	38643348	G	A	SNP	TNS4	ENST00000254051	human	ensembl	69_37n	-1	known	missense	c.1228	p.P410S	0.005	NULL	pfam_PTB,pfam_SH2,smart_SH2,smart_PTyr_interaction_dom,pfscan_SH2	-	no_errors	TNS4	HGNC	ENSG00000131746	83	0	0.00	57	16	21.92	-	-	-
WDR24	0	genome.wustl.edu	37	16	740055	740055	+	Missense_Mutation	SNP	C	C	A			TCGA-AR-A5QM-01A-11D-A27P-09	TCGA-AR-A5QM-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	be9c46db-f3c8-46d6-bb9e-b885a4c33e7e	bf63d4f2-a6df-4146-9ef6-5892fc21db95	16	740055	740055	C	A	SNP	WDR24	ENST00000248142	human	ensembl	69_37n	-1	known	missense	c.106	p.D36Y	0.002	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR24	HGNC	ENSG00000127580	20	0	0.00	31	6	16.22	-	-	-
ZNF280C	0	genome.wustl.edu	37	X	129370196	129370196	+	Missense_Mutation	SNP	G	G	T			TCGA-AR-A5QM-01A-11D-A27P-09	TCGA-AR-A5QM-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	be9c46db-f3c8-46d6-bb9e-b885a4c33e7e	bf63d4f2-a6df-4146-9ef6-5892fc21db95	X	129370196	129370196	G	T	SNP	ZNF280C	ENST00000370978	human	ensembl	69_37n	-1	known	missense	c.763	p.H255N	0.995	smart_Znf_C2H2-like	smart_Znf_C2H2-like	-	no_errors	ZNF280C	HGNC	ENSG00000056277	47	0	0.00	38	12	24.00	-	-	-
ZNF99	0	genome.wustl.edu	37	19	22940675	22940675	+	Missense_Mutation	SNP	C	C	A			TCGA-AR-A5QM-01A-11D-A27P-09	TCGA-AR-A5QM-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	be9c46db-f3c8-46d6-bb9e-b885a4c33e7e	bf63d4f2-a6df-4146-9ef6-5892fc21db95	19	22940675	22940675	C	A	SNP	ZNF99	ENST00000397104	human	ensembl	69_37n	-1	known	missense	c.1763	p.C588F	0.781	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF99	HGNC	ENSG00000213973	26	0	0.00	23	6	20.69	-	-	-
