Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
ABLIM2	0	genome.wustl.edu	37	4	8089995	8089996	+	Frame_Shift_Ins	INS	-	-	G			TCGA-B6-A0IM-01A-11W-A050-09	TCGA-B6-A0IM-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e99a4753-10db-4823-953d-e878a90e6b01	c473b5c1-e471-4517-bdaf-6491c768f5c4	4	8089995	8089996	-	G	INS	ABLIM2	ENST00000447017	human	ensembl	69_37n	-1	known	frame_shift_ins	c.355_354	p.G118fs	1.000:0.001	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	pfam_Znf_LIM,pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Znf_LIM,smart_Villin_headpiece,pfscan_Villin_headpiece,pfscan_Znf_LIM	-	no_errors	ABLIM2	HGNC	ENSG00000163995	21	0	0.00	24	4	14.29	-	-	-
APC	0	genome.wustl.edu	37	5	112175144	112175144	+	Frame_Shift_Del	DEL	G	G	-			TCGA-B6-A0IM-01A-11W-A050-09	TCGA-B6-A0IM-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e99a4753-10db-4823-953d-e878a90e6b01	c473b5c1-e471-4517-bdaf-6491c768f5c4	5	112175144	112175144	G	-	DEL	APC	ENST00000257430	human	ensembl	69_37n	+1	known	frame_shift_del	c.3853	p.D1285fs	1.000	NULL	pfam_APC_basic_dom,pfam_EB1-bd,pfam_APC_Cys-rich_rpt,pfam_Armadillo,pfam_SAMP,pfam_APC_15aa_rpt,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	APC	HGNC	ENSG00000134982	150	0	0.00	113	58	33.33	-	-	-
C1QTNF4	0	genome.wustl.edu	37	11	47611487	47611487	+	Silent	SNP	G	G	A			TCGA-B6-A0IM-01A-11W-A050-09	TCGA-B6-A0IM-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e99a4753-10db-4823-953d-e878a90e6b01	c473b5c1-e471-4517-bdaf-6491c768f5c4	11	47611487	47611487	G	A	SNP	C1QTNF4	ENST00000302514	human	ensembl	69_37n	-1	known	silent	c.876	p.D292	0.962	pfam_C1q,superfamily_Tumour_necrosis_fac-like,smart_C1q,pfscan_C1q	pfam_C1q,superfamily_Tumour_necrosis_fac-like,smart_C1q,pfscan_C1q,prints_C1q	-	no_errors	C1QTNF4	HGNC	ENSG00000172247	54	0	0.00	32	14	30.43	-	-	-
C5orf42	0	genome.wustl.edu	37	5	37213798	37213798	+	Missense_Mutation	SNP	C	C	G			TCGA-B6-A0IM-01A-11W-A050-09	TCGA-B6-A0IM-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e99a4753-10db-4823-953d-e878a90e6b01	c473b5c1-e471-4517-bdaf-6491c768f5c4	5	37213798	37213798	C	G	SNP	C5orf42	ENST00000425232	human	ensembl	69_37n	-1	known	missense	c.2783	p.G928A	0.000	NULL	superfamily_Quino_amine_DH_bsu	-	no_errors	C5orf42	HGNC	ENSG00000197603	171	0	0.00	81	37	31.36	-	-	-
CELSR1	0	genome.wustl.edu	37	22	46795613	46795613	+	Splice_Site	SNP	C	C	A			TCGA-B6-A0IM-01A-11W-A050-09	TCGA-B6-A0IM-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e99a4753-10db-4823-953d-e878a90e6b01	c473b5c1-e471-4517-bdaf-6491c768f5c4	22	46795613	46795613	C	A	SNP	CELSR1	ENST00000262738	human	ensembl	69_37n	-1	known	splice_site	c.5412+1	e10+1	1.000	-	-	-	no_errors	CELSR1	HGNC	ENSG00000075275	119	0	0.00	43	22	33.85	-	-	-
E2F4	0	genome.wustl.edu	37	16	67229793	67229794	+	In_Frame_Ins	INS	-	-	CAG			TCGA-B6-A0IM-01A-11W-A050-09	TCGA-B6-A0IM-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e99a4753-10db-4823-953d-e878a90e6b01	c473b5c1-e471-4517-bdaf-6491c768f5c4	16	67229793	67229794	-	CAG	INS	E2F4	ENST00000379378	human	ensembl	69_37n	+1	known	in_frame_ins	c.917_918	p.310in_frame_insS	1.000:0.995	NULL	pfam_E2F_TDP	-	no_errors	E2F4	HGNC	ENSG00000205250	35	0	0.00	25	10	28.57	-	-	-
EFHB	0	genome.wustl.edu	37	3	19975051	19975051	+	Missense_Mutation	SNP	C	C	T			TCGA-B6-A0IM-01A-11W-A050-09	TCGA-B6-A0IM-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e99a4753-10db-4823-953d-e878a90e6b01	c473b5c1-e471-4517-bdaf-6491c768f5c4	3	19975051	19975051	C	T	SNP	EFHB	ENST00000295824	human	ensembl	69_37n	-1	known	missense	c.460	p.V154I	0.000	NULL	pfam_SPARC/Testican_Ca-bd-dom,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	EFHB	HGNC	ENSG00000163576	136	0	0.00	63	45	41.67	-	-	-
FAM86C2P	0	genome.wustl.edu	37	11	67564238	67564238	+	RNA	SNP	C	C	T			TCGA-B6-A0IM-01A-11W-A050-09	TCGA-B6-A0IM-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e99a4753-10db-4823-953d-e878a90e6b01	c473b5c1-e471-4517-bdaf-6491c768f5c4	11	67564238	67564238	C	T	SNP	FAM86C2P	ENST00000525180	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	FAM86C2P	HGNC	ENSG00000160172	8	0	0.00	5	6	54.55	-	-	-
FAM86C2P	0	genome.wustl.edu	37	11	67564241	67564241	+	RNA	SNP	C	C	T			TCGA-B6-A0IM-01A-11W-A050-09	TCGA-B6-A0IM-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e99a4753-10db-4823-953d-e878a90e6b01	c473b5c1-e471-4517-bdaf-6491c768f5c4	11	67564241	67564241	C	T	SNP	FAM86C2P	ENST00000525180	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.219	-	-	-	no_errors	FAM86C2P	HGNC	ENSG00000160172	8	0	0.00	5	6	54.55	-	-	-
GATA3	0	genome.wustl.edu	37	10	8115873	8115874	+	Frame_Shift_Ins	INS	-	-	C			TCGA-B6-A0IM-01A-11W-A050-09	TCGA-B6-A0IM-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e99a4753-10db-4823-953d-e878a90e6b01	c473b5c1-e471-4517-bdaf-6491c768f5c4	10	8115873	8115874	-	C	INS	GATA3	ENST00000379328	human	ensembl	69_37n	+1	known	frame_shift_ins	c.1222_1223	p.P409fs	0.876:0.903	pirsf_TF_GATA-1/2/3	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	GATA3	HGNC	ENSG00000107485	74	0	0.00	95	30	24.00	-	-	-
GLI3	0	genome.wustl.edu	37	7	42007317	42007317	+	Missense_Mutation	SNP	C	C	G			TCGA-B6-A0IM-01A-11W-A050-09	TCGA-B6-A0IM-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e99a4753-10db-4823-953d-e878a90e6b01	c473b5c1-e471-4517-bdaf-6491c768f5c4	7	42007317	42007317	C	G	SNP	GLI3	ENST00000395925	human	ensembl	69_37n	-1	known	missense	c.2308	p.A770P	0.972	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	GLI3	HGNC	ENSG00000106571	385	0	0.00	144	160	52.46	-	-	-
GOLGA6L10	0	genome.wustl.edu	37	15	82635510	82635510	+	Missense_Mutation	SNP	C	C	A			TCGA-B6-A0IM-01A-11W-A050-09	TCGA-B6-A0IM-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e99a4753-10db-4823-953d-e878a90e6b01	c473b5c1-e471-4517-bdaf-6491c768f5c4	15	82635510	82635510	C	A	SNP	GOLGA6L10	ENST00000439287	human	ensembl	69_37n	-1	known	missense	c.1270	p.V424F	0.879	NULL	NULL	-	no_errors	GOLGA6L10	HGNC	ENSG00000205281	11	0	0.00	8	4	33.33	-	-	-
GPS2	0	genome.wustl.edu	37	17	7217398	7217398	+	Splice_Site	DEL	C	C	-			TCGA-B6-A0IM-01A-11W-A050-09	TCGA-B6-A0IM-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e99a4753-10db-4823-953d-e878a90e6b01	c473b5c1-e471-4517-bdaf-6491c768f5c4	17	7217398	7217398	C	-	DEL	GPS2	ENST00000380728	human	ensembl	69_37n	-1	known	splice_site_del	c.397+1	e4+1	1.000	-	-	-	no_errors	GPS2	HGNC	ENSG00000132522	340	0	0.00	34	50	56.82	-	-	-
INPPL1	0	genome.wustl.edu	37	11	71948208	71948209	+	Frame_Shift_Ins	INS	-	-	C			TCGA-B6-A0IM-01A-11W-A050-09	TCGA-B6-A0IM-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e99a4753-10db-4823-953d-e878a90e6b01	c473b5c1-e471-4517-bdaf-6491c768f5c4	11	71948208	71948209	-	C	INS	INPPL1	ENST00000298229	human	ensembl	69_37n	+1	known	frame_shift_ins	c.2920_2921	p.P977fs	0.025:0.066	NULL	pfam_Endo/exonuclease/phosphatase,pfam_SH2,pfam_SAM_2,pfam_SAM_type1,superfamily_Endo/exonuclease/phosphatase,superfamily_SAM/pointed,smart_SH2,smart_IPPc,smart_SAM,pfscan_SAM,pfscan_SH2,prints_SH2	-	no_errors	INPPL1	HGNC	ENSG00000165458	29	0	0.00	29	4	12.12	-	-	-
KCNH1	0	genome.wustl.edu	37	1	210857470	210857470	+	Missense_Mutation	SNP	C	C	T			TCGA-B6-A0IM-01A-11W-A050-09	TCGA-B6-A0IM-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e99a4753-10db-4823-953d-e878a90e6b01	c473b5c1-e471-4517-bdaf-6491c768f5c4	1	210857470	210857470	C	T	SNP	KCNH1	ENST00000271751	human	ensembl	69_37n	-1	known	missense	c.2123	p.R708Q	1.000	prints_K_chnl_volt-dep_EAG	pfam_Ion_trans_dom,pfam_cNMP-bd_dom,pfam_Ion_trans_2,pfam_PAS_fold,superfamily_cNMP-bd-like,smart_PAC,smart_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ERG,pfscan_cNMP-bd_dom,pfscan_PAS,pfscan_PAS-assoc_C,tigrfam_PAS	-	no_errors	KCNH1	HGNC	ENSG00000143473	150	1	0.66	58	27	31.76	-	-	-
LMBR1	0	genome.wustl.edu	37	7	156521383	156521383	+	Silent	SNP	T	T	C			TCGA-B6-A0IM-01A-11W-A050-09	TCGA-B6-A0IM-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e99a4753-10db-4823-953d-e878a90e6b01	c473b5c1-e471-4517-bdaf-6491c768f5c4	7	156521383	156521383	T	C	SNP	LMBR1	ENST00000354505	human	ensembl	69_37n	-1	known	silent	c.993	p.R331	1.000	pfam_LMBR1-like_membr_prot	pfam_LMBR1-like_membr_prot,prints_Lipcalin_1_rcpt	-	no_errors	LMBR1	HGNC	ENSG00000105983	414	0	0.00	284	81	22.13	-	-	-
MAN1B1	0	genome.wustl.edu	37	9	139995547	139995548	+	Frame_Shift_Ins	INS	-	-	G			TCGA-B6-A0IM-01A-11W-A050-09	TCGA-B6-A0IM-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e99a4753-10db-4823-953d-e878a90e6b01	c473b5c1-e471-4517-bdaf-6491c768f5c4	9	139995547	139995548	-	G	INS	MAN1B1	ENST00000371589	human	ensembl	69_37n	+1	known	frame_shift_ins	c.1007_1008	p.L339fs	1.000:0.999	pfam_Glyco_hydro_47,superfamily_Glyco_hydro_47,prints_Glyco_hydro_47	pfam_Glyco_hydro_47,superfamily_Glyco_hydro_47,prints_Glyco_hydro_47	-	no_errors	MAN1B1	HGNC	ENSG00000177239	50	0	0.00	30	5	14.29	-	-	-
MAP3K1	0	genome.wustl.edu	37	5	56176548	56176548	+	Nonsense_Mutation	SNP	C	C	T			TCGA-B6-A0IM-01A-11W-A050-09	TCGA-B6-A0IM-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e99a4753-10db-4823-953d-e878a90e6b01	c473b5c1-e471-4517-bdaf-6491c768f5c4	5	56176548	56176548	C	T	SNP	MAP3K1	ENST00000399503	human	ensembl	69_37n	+1	novel	nonsense	c.2098	p.Q700*	1.000	superfamily_ARM-type_fold	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_RING,pfscan_Znf_SWIM,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K1	HGNC	ENSG00000095015	215	1	0.46	120	51	29.82	-	-	-
MAP3K1	0	genome.wustl.edu	37	5	56189442	56189442	+	Frame_Shift_Del	DEL	C	C	-			TCGA-B6-A0IM-01A-11W-A050-09	TCGA-B6-A0IM-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e99a4753-10db-4823-953d-e878a90e6b01	c473b5c1-e471-4517-bdaf-6491c768f5c4	5	56189442	56189442	C	-	DEL	MAP3K1	ENST00000399503	human	ensembl	69_37n	+1	novel	frame_shift_del	c.4474	p.Q1492fs	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_RING,pfscan_Znf_SWIM,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K1	HGNC	ENSG00000095015	131	0	0.00	64	26	27.37	-	-	-
MAPK8IP3	0	genome.wustl.edu	37	16	1798259	1798259	+	Missense_Mutation	SNP	G	G	T			TCGA-B6-A0IM-01A-11W-A050-09	TCGA-B6-A0IM-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e99a4753-10db-4823-953d-e878a90e6b01	c473b5c1-e471-4517-bdaf-6491c768f5c4	16	1798259	1798259	G	T	SNP	MAPK8IP3	ENST00000250894	human	ensembl	69_37n	+1	known	missense	c.1006	p.D336Y	1.000	NULL	pfam_JNK/Rab-associated_protein-1_N,superfamily_WD40_repeat_dom	-	no_errors	MAPK8IP3	HGNC	ENSG00000138834	25	0	0.00	10	13	56.52	-	-	-
NLRP5	0	genome.wustl.edu	37	19	56538873	56538873	+	Missense_Mutation	SNP	G	G	A			TCGA-B6-A0IM-01A-11W-A050-09	TCGA-B6-A0IM-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e99a4753-10db-4823-953d-e878a90e6b01	c473b5c1-e471-4517-bdaf-6491c768f5c4	19	56538873	56538873	G	A	SNP	NLRP5	ENST00000390649	human	ensembl	69_37n	+1	known	missense	c.1274	p.R425H	0.019	NULL	pfam_DAPIN,superfamily_DEATH-like,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP5	HGNC	ENSG00000171487	59	0	0.00	30	13	30.23	-	-	-
NNT	0	genome.wustl.edu	37	5	43702838	43702838	+	Missense_Mutation	SNP	G	G	C			TCGA-B6-A0IM-01A-11W-A050-09	TCGA-B6-A0IM-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e99a4753-10db-4823-953d-e878a90e6b01	c473b5c1-e471-4517-bdaf-6491c768f5c4	5	43702838	43702838	G	C	SNP	NNT	ENST00000264663	human	ensembl	69_37n	+1	known	missense	c.3111	p.Q1037H	1.000	pfam_NADH_DH_b	pfam_NADH_DH_b,pfam_AlaDH/PNT_NAD(H)-bd,pfam_AlaDH/PNT_N,tigrfam_NADP_transhyd_a	-	no_errors	NNT	HGNC	ENSG00000112992	77	0	0.00	51	26	33.77	-	-	-
OR2F1	0	genome.wustl.edu	37	7	143657386	143657386	+	Missense_Mutation	SNP	G	G	A			TCGA-B6-A0IM-01A-11W-A050-09	TCGA-B6-A0IM-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e99a4753-10db-4823-953d-e878a90e6b01	c473b5c1-e471-4517-bdaf-6491c768f5c4	7	143657386	143657386	G	A	SNP	OR2F1	ENST00000392899	human	ensembl	69_37n	+1	known	missense	c.323	p.G108D	0.690	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2F1	HGNC	ENSG00000213215	342	0	0.00	219	233	51.55	-	-	-
PNCK	0	genome.wustl.edu	37	X	152937334	152937334	+	Splice_Site	SNP	C	C	A			TCGA-B6-A0IM-01A-11W-A050-09	TCGA-B6-A0IM-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e99a4753-10db-4823-953d-e878a90e6b01	c473b5c1-e471-4517-bdaf-6491c768f5c4	X	152937334	152937334	C	A	SNP	PNCK	ENST00000447676	human	ensembl	69_37n	-1	known	splice_site	c.663+1	e5+1	1.000	-	-	-	no_errors	PNCK	HGNC	ENSG00000130822	29	0	0.00	38	14	26.92	-	-	-
PRND	0	genome.wustl.edu	37	20	4705266	4705266	+	Silent	SNP	G	G	A			TCGA-B6-A0IM-01A-11W-A050-09	TCGA-B6-A0IM-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e99a4753-10db-4823-953d-e878a90e6b01	c473b5c1-e471-4517-bdaf-6491c768f5c4	20	4705266	4705266	G	A	SNP	PRND	ENST00000305817	human	ensembl	69_37n	+1	known	silent	c.69	p.A23	0.000	pfam_Doppel	pfam_Prion/Doppel_prot_b-ribbon_dom,pfam_Doppel,superfamily_Prion/Doppel_prot_b-ribbon_dom	-	no_errors	PRND	HGNC	ENSG00000171864	35	0	0.00	29	13	30.95	-	-	-
RAD50	0	genome.wustl.edu	37	5	131926953	131926953	+	Missense_Mutation	SNP	T	T	C			TCGA-B6-A0IM-01A-11W-A050-09	TCGA-B6-A0IM-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e99a4753-10db-4823-953d-e878a90e6b01	c473b5c1-e471-4517-bdaf-6491c768f5c4	5	131926953	131926953	T	C	SNP	RAD50	ENST00000265335	human	ensembl	69_37n	+1	known	missense	c.1490	p.V497A	0.996	tigrfam_Rad50	pfam_Rad50_Zn_hook,superfamily_Prefoldin,pfscan_Zn_hook_Rad50,tigrfam_Rad50	-	no_errors	RAD50	HGNC	ENSG00000113522	112	0	0.00	70	37	34.58	-	-	-
RIN1	0	genome.wustl.edu	37	11	66100832	66100832	+	Frame_Shift_Del	DEL	C	C	-			TCGA-B6-A0IM-01A-11W-A050-09	TCGA-B6-A0IM-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e99a4753-10db-4823-953d-e878a90e6b01	c473b5c1-e471-4517-bdaf-6491c768f5c4	11	66100832	66100832	C	-	DEL	RIN1	ENST00000311320	human	ensembl	69_37n	-1	known	frame_shift_del	c.1772	p.G591fs	0.509	pfam_VPS9,smart_VPS9_subgr,pfscan_VPS9	pfam_VPS9,pfam_Ras-assoc,smart_SH2,smart_VPS9_subgr,smart_Ras-assoc,pfscan_Ras-assoc,pfscan_SH2,pfscan_VPS9	-	no_errors	RIN1	HGNC	ENSG00000174791	12	0	0.00	15	14	46.67	-	-	-
SAMD9	0	genome.wustl.edu	37	7	92733180	92733180	+	Missense_Mutation	SNP	G	G	C			TCGA-B6-A0IM-01A-11W-A050-09	TCGA-B6-A0IM-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e99a4753-10db-4823-953d-e878a90e6b01	c473b5c1-e471-4517-bdaf-6491c768f5c4	7	92733180	92733180	G	C	SNP	SAMD9	ENST00000379958	human	ensembl	69_37n	-1	known	missense	c.2231	p.T744S	1.000	NULL	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	SAMD9	HGNC	ENSG00000205413	151	0	0.00	45	24	34.78	-	-	-
SREBF2	0	genome.wustl.edu	37	22	42281016	42281016	+	Splice_Site	SNP	G	G	A			TCGA-B6-A0IM-01A-11W-A050-09	TCGA-B6-A0IM-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e99a4753-10db-4823-953d-e878a90e6b01	c473b5c1-e471-4517-bdaf-6491c768f5c4	22	42281016	42281016	G	A	SNP	SREBF2	ENST00000361204	human	ensembl	69_37n	+1	known	splice_site	c.2208+1	e11+1	1.000	-	-	-	no_errors	SREBF2	HGNC	ENSG00000198911	292	0	0.00	149	97	39.43	-	-	-
STARD8	0	genome.wustl.edu	37	X	67938433	67938433	+	Silent	SNP	C	C	T			TCGA-B6-A0IM-01A-11W-A050-09	TCGA-B6-A0IM-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e99a4753-10db-4823-953d-e878a90e6b01	c473b5c1-e471-4517-bdaf-6491c768f5c4	X	67938433	67938433	C	T	SNP	STARD8	ENST00000374599	human	ensembl	69_37n	+1	known	silent	c.1677	p.R559	0.259	NULL	pfam_START_lipid-bd,pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,smart_START_lipid-bd,pfscan_START_lipid-bd,pfscan_RhoGAP_dom	-	no_errors	STARD8	HGNC	ENSG00000130052	87	0	0.00	43	19	30.65	-	-	-
STK25	0	genome.wustl.edu	37	2	242440175	242440175	+	Missense_Mutation	SNP	C	C	T			TCGA-B6-A0IM-01A-11W-A050-09	TCGA-B6-A0IM-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e99a4753-10db-4823-953d-e878a90e6b01	c473b5c1-e471-4517-bdaf-6491c768f5c4	2	242440175	242440175	C	T	SNP	STK25	ENST00000316586	human	ensembl	69_37n	-1	known	missense	c.298	p.G100S	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	STK25	HGNC	ENSG00000115694	33	0	0.00	11	10	47.62	-	-	-
TRIM71	0	genome.wustl.edu	37	3	32933156	32933156	+	Missense_Mutation	SNP	G	G	T			TCGA-B6-A0IM-01A-11W-A050-09	TCGA-B6-A0IM-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e99a4753-10db-4823-953d-e878a90e6b01	c473b5c1-e471-4517-bdaf-6491c768f5c4	3	32933156	32933156	G	T	SNP	TRIM71	ENST00000383763	human	ensembl	69_37n	+1	known	missense	c.2460	p.M820I	1.000	pfscan_NHL_repeat_subgr	pfam_NHL_repeat,pfam_Filamin/ABP280_repeat-like,pfam_Znf_B-box,superfamily_Ig_E-set,smart_Znf_RING,smart_Znf_B-box,smart_Filamin,pfscan_Filamin/ABP280_repeat-like,pfscan_NHL_repeat_subgr,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM71	HGNC	ENSG00000206557	36	0	0.00	26	8	23.53	-	-	-
TRIP4	0	genome.wustl.edu	37	15	64701983	64701983	+	Missense_Mutation	SNP	G	G	A			TCGA-B6-A0IM-01A-11W-A050-09	TCGA-B6-A0IM-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e99a4753-10db-4823-953d-e878a90e6b01	c473b5c1-e471-4517-bdaf-6491c768f5c4	15	64701983	64701983	G	A	SNP	TRIP4	ENST00000560475	human	ensembl	69_37n	+1	putative	missense	c.67	p.E23K	1.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	TRIP4	HGNC	ENSG00000103671	198	1	0.50	110	40	26.67	-	-	-
TRO	0	genome.wustl.edu	37	X	54955782	54955782	+	Silent	SNP	G	G	A			TCGA-B6-A0IM-01A-11W-A050-09	TCGA-B6-A0IM-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e99a4753-10db-4823-953d-e878a90e6b01	c473b5c1-e471-4517-bdaf-6491c768f5c4	X	54955782	54955782	G	A	SNP	TRO	ENST00000173898	human	ensembl	69_37n	+1	known	silent	c.2625	p.T875	0.000	NULL	pfam_MAGE,pfscan_MAGE	-	no_errors	TRO	HGNC	ENSG00000067445	47	0	0.00	37	12	24.49	-	-	-
UNC13B	0	genome.wustl.edu	37	9	35376118	35376118	+	Missense_Mutation	SNP	C	C	G			TCGA-B6-A0IM-01A-11W-A050-09	TCGA-B6-A0IM-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e99a4753-10db-4823-953d-e878a90e6b01	c473b5c1-e471-4517-bdaf-6491c768f5c4	9	35376118	35376118	C	G	SNP	UNC13B	ENST00000396787	human	ensembl	69_37n	+1	known	missense	c.1498	p.P500A	1.000	pfam_Prot_Kinase_C-like_PE/DAG-bd,smart_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_Kinase_C-like_PE/DAG-bd	pfam_Munc13_subgr_dom-2,pfam_Ca-dep_secretion_activator,pfam_C2_Ca-dep,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_Prot_Kinase_C-like_PE/DAG-bd,pfscan_C2_membr_targeting,pfscan_Prot_Kinase_C-like_PE/DAG-bd,prints_C2_dom	-	no_errors	UNC13B	HGNC	ENSG00000198722	56	0	0.00	26	9	25.00	-	-	-
USP42	0	genome.wustl.edu	37	7	6194543	6194546	+	Frame_Shift_Del	DEL	GGCG	GGCG	-			TCGA-B6-A0IM-01A-11W-A050-09	TCGA-B6-A0IM-10A-01W-A055-09	GGCG	GGCG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e99a4753-10db-4823-953d-e878a90e6b01	c473b5c1-e471-4517-bdaf-6491c768f5c4	7	6194543	6194546	GGCG	-	DEL	USP42	ENST00000306177	human	ensembl	69_37n	+1	known	frame_shift_del	c.3358_3361	p.G1120fs	0.004:0.002:0.001:0.000	NULL	pfam_Peptidase_C19,pfscan_Peptidase_C19	-	no_errors	USP42	HGNC	ENSG00000106346	19	0	0.00	11	4	26.67	-	-	-
VEZF1	0	genome.wustl.edu	37	17	56056604	56056605	+	In_Frame_Ins	INS	-	-	TGC			TCGA-B6-A0IM-01A-11W-A050-09	TCGA-B6-A0IM-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e99a4753-10db-4823-953d-e878a90e6b01	c473b5c1-e471-4517-bdaf-6491c768f5c4	17	56056604	56056605	-	TGC	INS	VEZF1	ENST00000581208	human	ensembl	69_37n	-1	known	in_frame_ins	c.1047_1046	p.353in_frame_insQ	0.934:0.940	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	VEZF1	HGNC	ENSG00000136451	55	0	0.00	61	7	10.29	-	-	-
ZNF277	0	genome.wustl.edu	37	7	111982649	111982649	+	Silent	SNP	C	C	G			TCGA-B6-A0IM-01A-11W-A050-09	TCGA-B6-A0IM-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e99a4753-10db-4823-953d-e878a90e6b01	c473b5c1-e471-4517-bdaf-6491c768f5c4	7	111982649	111982649	C	G	SNP	ZNF277	ENST00000361822	human	ensembl	69_37n	+1	known	silent	c.1218	p.L406	0.983	NULL	pfam_Znf_C2H2_jaz,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF277	HGNC	ENSG00000198839	66	0	0.00	47	42	47.19	-	-	-
ZNF416	0	genome.wustl.edu	37	19	58083540	58083540	+	Missense_Mutation	SNP	G	G	A			TCGA-B6-A0IM-01A-11W-A050-09	TCGA-B6-A0IM-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e99a4753-10db-4823-953d-e878a90e6b01	c473b5c1-e471-4517-bdaf-6491c768f5c4	19	58083540	58083540	G	A	SNP	ZNF416	ENST00000196489	human	ensembl	69_37n	-1	known	missense	c.1732	p.R578C	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF416	HGNC	ENSG00000083817	165	0	0.00	67	30	30.93	-	-	-
