Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
AKR1CL1	0	genome.wustl.edu	37	10	5200861	5200861	+	Missense_Mutation	SNP	C	C	A			TCGA-B6-A0RQ-01A-11D-A10Y-09	TCGA-B6-A0RQ-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f425edf3-0d08-49bf-94f6-f03343873a6c	fe1d77e9-f21d-4914-ae1a-2cc6dd6f8cba	10	5200861	5200861	C	A	SNP	AKR1CL1	ENST00000473890	human	ensembl	69_37n	-1	novel	missense	c.101	p.C34F	1.000	pfam_NADP_OxRdtase_dom,superfamily_NADP_OxRdtase_dom,prints_Aldo/keto_reductase_subgr	pfam_NADP_OxRdtase_dom,superfamily_NADP_OxRdtase_dom,prints_Aldo/keto_reductase_subgr	-	no_errors	AKR1CL1	HGNC	ENSG00000196326	9	0	0.00	19	9	32.14	-	-	-
CCNI2	0	genome.wustl.edu	37	5	132084048	132084048	+	Missense_Mutation	SNP	T	T	C			TCGA-B6-A0RQ-01A-11D-A10Y-09	TCGA-B6-A0RQ-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f425edf3-0d08-49bf-94f6-f03343873a6c	fe1d77e9-f21d-4914-ae1a-2cc6dd6f8cba	5	132084048	132084048	T	C	SNP	CCNI2	ENST00000378731	human	ensembl	69_37n	+1	novel	missense	c.439	p.C147R	0.036	superfamily_Cyclin-like,pirsf_Cyclin_A/B/D/E	pfam_Cyclin_N,superfamily_Cyclin-like,smart_Cyclin-like,pirsf_Cyclin_A/B/D/E	-	no_errors	CCNI2	HGNC	ENSG00000205089	113	0	0.00	126	17	11.81	-	-	-
CDH1	0	genome.wustl.edu	37	16	68772218	68772218	+	Nonsense_Mutation	SNP	C	C	T			TCGA-B6-A0RQ-01A-11D-A10Y-09	TCGA-B6-A0RQ-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f425edf3-0d08-49bf-94f6-f03343873a6c	fe1d77e9-f21d-4914-ae1a-2cc6dd6f8cba	16	68772218	68772218	C	T	SNP	CDH1	ENST00000261769	human	ensembl	69_37n	+1	known	nonsense	c.67	p.Q23*	0.982	superfamily_Cadherin-like	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH1	HGNC	ENSG00000039068	42	0	0.00	34	4	10.53	-	-	-
DEPDC1	0	genome.wustl.edu	37	1	68954121	68954121	+	Frame_Shift_Del	DEL	T	T	-			TCGA-B6-A0RQ-01A-11D-A10Y-09	TCGA-B6-A0RQ-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f425edf3-0d08-49bf-94f6-f03343873a6c	fe1d77e9-f21d-4914-ae1a-2cc6dd6f8cba	1	68954121	68954121	T	-	DEL	DEPDC1	ENST00000456315	human	ensembl	69_37n	-1	known	frame_shift_del	c.657	p.Q219fs	0.702	NULL	pfam_DEP_dom,superfamily_Rho_GTPase_activation_prot,smart_DEP_dom,pfscan_DEP_dom	-	no_errors	DEPDC1	HGNC	ENSG00000024526	377	0	0.00	558	64	10.24	-	-	-
GRID2IP	0	genome.wustl.edu	37	7	6545509	6545509	+	Silent	SNP	C	C	A			TCGA-B6-A0RQ-01A-11D-A10Y-09	TCGA-B6-A0RQ-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f425edf3-0d08-49bf-94f6-f03343873a6c	fe1d77e9-f21d-4914-ae1a-2cc6dd6f8cba	7	6545509	6545509	C	A	SNP	GRID2IP	ENST00000457091	human	ensembl	69_37n	-1	putative	silent	c.2574	p.L858	1.000	pfam_FH2_actin-bd,superfamily_FH2_actin-bd,smart_Actin-bd_FH2/DRF_autoreg	pfam_FH2_actin-bd,pfam_PDZ,superfamily_FH2_actin-bd,superfamily_PDZ,smart_PDZ,smart_Actin-bd_FH2/DRF_autoreg,pfscan_PDZ	-	no_errors	GRID2IP	HGNC	ENSG00000215045	86	0	0.00	96	11	10.19	-	-	-
KCNF1	0	genome.wustl.edu	37	2	11053551	11053551	+	Silent	SNP	G	G	A			TCGA-B6-A0RQ-01A-11D-A10Y-09	TCGA-B6-A0RQ-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f425edf3-0d08-49bf-94f6-f03343873a6c	fe1d77e9-f21d-4914-ae1a-2cc6dd6f8cba	2	11053551	11053551	G	A	SNP	KCNF1	ENST00000295082	human	ensembl	69_37n	+1	known	silent	c.999	p.V333	1.000	pfam_Ion_trans_dom,pfam_Ion_trans_2,pfam_PKD1_2_channel,prints_K_chnl,prints_K_chnl_volt-dep_Kv	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_Ion_trans_2,pfam_PKD1_2_channel,superfamily_BTB/POZ_fold,prints_K_chnl,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv6	-	no_errors	KCNF1	HGNC	ENSG00000162975	137	0	0.00	89	10	10.10	-	-	-
KIR3DL2	0	genome.wustl.edu	37	19	55363677	55363677	+	Missense_Mutation	SNP	C	C	T			TCGA-B6-A0RQ-01A-11D-A10Y-09	TCGA-B6-A0RQ-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f425edf3-0d08-49bf-94f6-f03343873a6c	fe1d77e9-f21d-4914-ae1a-2cc6dd6f8cba	19	55363677	55363677	C	T	SNP	KIR3DL2	ENST00000326321	human	ensembl	69_37n	+1	known	missense	c.295	p.R99C	0.000	smart_Ig_sub	pfam_Immunoglobulin,smart_Ig_sub	-	no_errors	KIR3DL2	HGNC	ENSG00000240403	58	0	0.00	74	23	23.71	-	-	-
MGMT	0	genome.wustl.edu	37	10	131565093	131565093	+	Silent	SNP	C	C	T			TCGA-B6-A0RQ-01A-11D-A10Y-09	TCGA-B6-A0RQ-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f425edf3-0d08-49bf-94f6-f03343873a6c	fe1d77e9-f21d-4914-ae1a-2cc6dd6f8cba	10	131565093	131565093	C	T	SNP	MGMT	ENST00000306010	human	ensembl	69_37n	+1	known	silent	c.549	p.S183	0.984	pfam_MethylDNA_cys_MeTrfase_DNA-bd,superfamily_MethylDNA_cys_MeTrfase_DNA-bd,tigrfam_MethylDNA_cys_MeTrfase_DNA-bd	pfam_MethylDNA_cys_MeTrfase_DNA-bd,pfam_MethylG_MeTrfase,superfamily_MethylDNA_cys_MeTrfase_DNA-bd,tigrfam_MethylDNA_cys_MeTrfase_DNA-bd	-	no_errors	MGMT	HGNC	ENSG00000170430	58	0	0.00	55	11	16.42	-	-	-
MYH7	0	genome.wustl.edu	37	14	23899017	23899017	+	Missense_Mutation	SNP	G	G	A			TCGA-B6-A0RQ-01A-11D-A10Y-09	TCGA-B6-A0RQ-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f425edf3-0d08-49bf-94f6-f03343873a6c	fe1d77e9-f21d-4914-ae1a-2cc6dd6f8cba	14	23899017	23899017	G	A	SNP	MYH7	ENST00000355349	human	ensembl	69_37n	-1	known	missense	c.1105	p.R369W	0.995	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_Prefoldin,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH7	HGNC	ENSG00000092054	241	0	0.00	209	27	11.34	-	-	-
OBSCN	0	genome.wustl.edu	37	1	228559663	228559663	+	Missense_Mutation	SNP	C	C	T			TCGA-B6-A0RQ-01A-11D-A10Y-09	TCGA-B6-A0RQ-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f425edf3-0d08-49bf-94f6-f03343873a6c	fe1d77e9-f21d-4914-ae1a-2cc6dd6f8cba	1	228559663	228559663	C	T	SNP	OBSCN	ENST00000422127	human	ensembl	69_37n	+1	known	missense	c.21184	p.P7062S	0.000	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_DH-domain,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_IQ_motif_EF-hand-BS,smart_DH-domain,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,pfscan_DH-domain	-	no_errors	OBSCN	HGNC	ENSG00000154358	66	0	0.00	51	9	15.00	-	-	-
PIK3CA	0	genome.wustl.edu	37	3	178936083	178936083	+	Missense_Mutation	SNP	A	A	G			TCGA-B6-A0RQ-01A-11D-A10Y-09	TCGA-B6-A0RQ-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f425edf3-0d08-49bf-94f6-f03343873a6c	fe1d77e9-f21d-4914-ae1a-2cc6dd6f8cba	3	178936083	178936083	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	+1	known	missense	c.1625	p.E542G	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	125	0	0.00	136	19	12.26	-	-	-
PITPNM3	0	genome.wustl.edu	37	17	6380354	6380354	+	Silent	SNP	G	G	A			TCGA-B6-A0RQ-01A-11D-A10Y-09	TCGA-B6-A0RQ-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f425edf3-0d08-49bf-94f6-f03343873a6c	fe1d77e9-f21d-4914-ae1a-2cc6dd6f8cba	17	6380354	6380354	G	A	SNP	PITPNM3	ENST00000262483	human	ensembl	69_37n	-1	known	silent	c.1080	p.L360	0.992	NULL	pfam_DDHD,pfam_LNS2,superfamily_HAD-like_dom,smart_LNS2,pfscan_DDHD	-	no_errors	PITPNM3	HGNC	ENSG00000091622	115	0	0.00	122	16	11.59	-	-	-
PNMA2	0	genome.wustl.edu	37	8	26365666	26365666	+	Missense_Mutation	SNP	C	C	G			TCGA-B6-A0RQ-01A-11D-A10Y-09	TCGA-B6-A0RQ-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f425edf3-0d08-49bf-94f6-f03343873a6c	fe1d77e9-f21d-4914-ae1a-2cc6dd6f8cba	8	26365666	26365666	C	G	SNP	PNMA2	ENST00000522362	human	ensembl	69_37n	-1	known	missense	c.606	p.K202N	1.000	NULL	pfam_Retrotrans_gag	-	no_errors	PNMA2	HGNC	ENSG00000240694	54	0	0.00	59	8	11.94	-	-	-
PPP1R16B	0	genome.wustl.edu	37	20	37546989	37546989	+	Missense_Mutation	SNP	G	G	A			TCGA-B6-A0RQ-01A-11D-A10Y-09	TCGA-B6-A0RQ-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f425edf3-0d08-49bf-94f6-f03343873a6c	fe1d77e9-f21d-4914-ae1a-2cc6dd6f8cba	20	37546989	37546989	G	A	SNP	PPP1R16B	ENST00000299824	human	ensembl	69_37n	+1	known	missense	c.1384	p.V462M	0.000	pirsf_Pase-1_reg_su_16AB_euk	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pirsf_Pase-1_reg_su_16AB_euk,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	PPP1R16B	HGNC	ENSG00000101445	73	0	0.00	64	11	14.67	-	-	-
RIPK1	0	genome.wustl.edu	37	6	3077012	3077012	+	RNA	DEL	G	G	-			TCGA-B6-A0RQ-01A-11D-A10Y-09	TCGA-B6-A0RQ-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f425edf3-0d08-49bf-94f6-f03343873a6c	fe1d77e9-f21d-4914-ae1a-2cc6dd6f8cba	6	3077012	3077012	G	-	DEL	RIPK1	ENST00000490396	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RIPK1	HGNC	ENSG00000137275	36	0	0.00	46	6	11.54	-	-	-
TAGLN	0	genome.wustl.edu	37	11	117075033	117075033	+	Missense_Mutation	SNP	C	C	A			TCGA-B6-A0RQ-01A-11D-A10Y-09	TCGA-B6-A0RQ-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f425edf3-0d08-49bf-94f6-f03343873a6c	fe1d77e9-f21d-4914-ae1a-2cc6dd6f8cba	11	117075033	117075033	C	A	SNP	TAGLN	ENST00000529622	human	ensembl	69_37n	+1	putative	missense	c.413	p.P138Q	0.934	pfam_Calponin_repeat,pfscan_Calponin_repeat,prints_SM22_calponin	pfam_Calponin_repeat,pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain,pfscan_Calponin_repeat,prints_Transgelin,prints_SM22_calponin	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	TAGLN	HGNC	ENSG00000149591	84	0	0.00	116	16	11.94	-	-	-
TSC2	0	genome.wustl.edu	37	16	2134569	2134569	+	Missense_Mutation	SNP	C	C	G			TCGA-B6-A0RQ-01A-11D-A10Y-09	TCGA-B6-A0RQ-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f425edf3-0d08-49bf-94f6-f03343873a6c	fe1d77e9-f21d-4914-ae1a-2cc6dd6f8cba	16	2134569	2134569	C	G	SNP	TSC2	ENST00000219476	human	ensembl	69_37n	+1	known	missense	c.4346	p.S1449C	0.007	NULL	pfam_Tuberin-type_domain,pfam_Tuberin_N,pfam_Rap_GAP,superfamily_ARM-type_fold,prints_Tuberin,pfscan_Rap_GAP	-	no_errors	TSC2	HGNC	ENSG00000103197	19	0	0.00	27	7	20.59	-	-	-
